Author: Hadley Wickham
Diff between profr versions 0.1 dated 2008-05-02 and 0.1.1 dated 2008-05-02
Title: An alternative display for profiling information
Description: profr provides an alternative data structure and visual rendering for the profiling information generated by Rprof.
ANNOUNCE |only
DESCRIPTION | 6 +++---
R/profile.r | 3 ++-
3 files changed, 5 insertions(+), 4 deletions(-)
Author: Aaron A. King, Edward L. Ionides, Carles Martinez Breto
Title: Partially-observed Markov processes
Description: Inference methods for partially-observed Markov processes
Diff between pomp versions 0.17-3 dated 2007-07-24 and 0.18-1 dated 2008-05-02
pomp-0.17-3/pomp/GPL |only pomp-0.17-3/pomp/R/zzz.R |only pomp-0.18-1/pomp/DESCRIPTION | 12 pomp-0.18-1/pomp/NAMESPACE | 18 - pomp-0.18-1/pomp/R/aaa.R | 5 pomp-0.18-1/pomp/R/bsplines.R | 12 pomp-0.18-1/pomp/R/euler.R |only pomp-0.18-1/pomp/R/eulermultinom.R |only pomp-0.18-1/pomp/R/init.state-pomp.R |only pomp-0.18-1/pomp/R/mif.R | 52 ++-- pomp-0.18-1/pomp/R/particles-mif.R | 66 ++--- pomp-0.18-1/pomp/R/pfilter-mif.R | 47 ++- pomp-0.18-1/pomp/R/pfilter.R | 381 ++++++++++++++++-------------- pomp-0.18-1/pomp/R/pomp.R | 30 ++ pomp-0.18-1/pomp/R/simulate-mif.R | 5 pomp-0.18-1/pomp/R/simulate-pomp.R | 31 +- pomp-0.18-1/pomp/R/sobol.R |only pomp-0.18-1/pomp/data/ou2.rda |binary pomp-0.18-1/pomp/inst/GPL |only pomp-0.18-1/pomp/inst/LICENSE |only pomp-0.18-1/pomp/inst/doc/random_walk.Rnw | 238 ++++++++++-------- pomp-0.18-1/pomp/inst/doc/random_walk.pdf |binary pomp-0.18-1/pomp/inst/examples |only pomp-0.18-1/pomp/inst/include |only pomp-0.18-1/pomp/man/bsplines.Rd | 18 - pomp-0.18-1/pomp/man/dmeasure-pomp.Rd | 50 ++- pomp-0.18-1/pomp/man/dprocess-pomp.Rd | 45 +-- pomp-0.18-1/pomp/man/euler.Rd |only pomp-0.18-1/pomp/man/eulermultinom.Rd |only pomp-0.18-1/pomp/man/init.state-pomp.Rd |only pomp-0.18-1/pomp/man/mif-class.Rd | 1 pomp-0.18-1/pomp/man/mif.Rd | 142 +++++------ pomp-0.18-1/pomp/man/ou2.Rd | 27 -- pomp-0.18-1/pomp/man/pfilter.Rd | 124 +++++---- pomp-0.18-1/pomp/man/pomp-class.Rd | 6 pomp-0.18-1/pomp/man/pomp-package.Rd | 43 +-- pomp-0.18-1/pomp/man/pomp.Rd | 210 ++++++++-------- pomp-0.18-1/pomp/man/rmeasure-pomp.Rd | 9 pomp-0.18-1/pomp/man/rprocess-pomp.Rd | 45 ++- pomp-0.18-1/pomp/man/simulate-pomp.Rd | 55 +--- pomp-0.18-1/pomp/man/sobol.Rd |only pomp-0.18-1/pomp/src/dsobol.c |only pomp-0.18-1/pomp/src/euler.c |only pomp-0.18-1/pomp/src/euler.h |only pomp-0.18-1/pomp/src/eulermultinom.c |only pomp-0.18-1/pomp/src/interp.c |only pomp-0.18-1/pomp/src/interp.h |only pomp-0.18-1/pomp/src/ou2.c | 26 +- pomp-0.18-1/pomp/src/pomp.h | 16 - pomp-0.18-1/pomp/src/sobol.f |only pomp-0.18-1/pomp/tests |only 51 files changed, 936 insertions(+), 778 deletions(-)
Author: John Verzani with contributions by Yvonnick Noel
Title: Poor Man's GUI
Description: Simple GUI for R using gWidgets.
Diff between pmg versions 0.9-37 dated 2008-01-11 and 0.9-38 dated 2008-05-02
pmg-0.9-37/pmg/inst/doc/pmg-dataviewer.eps |only pmg-0.9-37/pmg/inst/doc/pmg-plotnotebook.eps |only pmg-0.9-37/pmg/inst/doc/pmg-sample-dialog.eps |only pmg-0.9-38/pmg/DESCRIPTION | 12 ++++++------ pmg-0.9-38/pmg/NAMESPACE | 1 + pmg-0.9-38/pmg/NEWS |only pmg-0.9-38/pmg/R/BasicWidgets.R | 3 ++- pmg-0.9-38/pmg/R/WindowCollector.R | 2 +- pmg-0.9-38/pmg/R/aaa.pmg.gw.R | 1 + pmg-0.9-38/pmg/R/dSummaryDialog.R | 6 +++--- pmg-0.9-38/pmg/R/pmg.R | 5 +++-- pmg-0.9-38/pmg/R/pmg.datamenu.R | 2 +- pmg-0.9-38/pmg/R/pmg.plotmenu.R | 3 +-- pmg-0.9-38/pmg/R/pmg.teachingDemos.R | 10 +++++----- pmg-0.9-38/pmg/R/pmg.viewDataSets.R | 2 +- pmg-0.9-38/pmg/inst/doc/pmg.pdf |binary pmg-0.9-38/pmg/man/pmg-undocumented.Rd | 1 + pmg-0.9-38/pmg/man/pmg.Rd | 7 ++++++- 18 files changed, 32 insertions(+), 23 deletions(-)
Author: Brian J. Smith
Title: Bayesian Output Analysis Program (BOA) for MCMC
Description: A menu-driven program and library of functions for carrying out
convergence diagnostics and statistical and graphical analysis of Markov
chain Monte Carlo sampling output.
Diff between boa versions 1.1.7-1 dated 2007-12-06 and 1.1.7-2 dated 2008-05-02
DESCRIPTION | 8 +- R/boa.core.R | 209 +++++++++++++++++++++++++----------------------------- R/boa.menu.file.R | 7 + R/boa.plot.open.R | 2 R/spectrum0.R | 2 man/boa.save.Rd | 4 - 6 files changed, 113 insertions(+), 119 deletions(-)
Author: S original by Rene Carmona
Diff between Rwave versions 1.24 dated 2006-12-05 and 1.24-1 dated 2008-05-02
Title: Time-Frequency analysis of 1-D signals
Description: Rwave is a library of R functions which provide an
environment for the Time-Frequency analysis of 1-D signals (and
especially for the wavelet and Gabor transforms of noisy signals).
It was originally written for Splus by Rene Carmona, Bruno Torresani,
and Wen L. Hwang, first at the University of California at Irvine and
then at Princeton University. Credit should also be given to Andrea
Wang whose functions on the dyadic wavelet transform are included.
Rwave is based on the book:
"Practical Time-Frequency Analysis: Gabor and Wavelet Transforms with
an Implementation in S", by Rene Carmona, Wen L. Hwang and Bruno
Torresani, Academic Press, 1998.
Rwave-1.24-1/Rwave/DESCRIPTION | 47 ++++++-------
Rwave-1.24-1/Rwave/R/Cwt_Morlet.R | 2
Rwave-1.24-1/Rwave/R/Hessian_Climbers.R | 4 -
Rwave-1.24-1/Rwave/R/Pca_Climbers.R | 2
Rwave-1.24-1/Rwave/R/Pca_Climbers1.R | 2
Rwave-1.24-1/Rwave/R/Snake_Annealing.R | 15 ++--
Rwave-1.24-1/Rwave/R/gRidge_Irregular.R | 2
Rwave-1.24-1/Rwave/R/gRidge_Recons.R | 2
Rwave-1.24-1/Rwave/R/pca_rec.r | 4 -
Rwave-1.24-1/Rwave/R/radar.r | 10 +-
Rwave-1.24-1/Rwave/R/recon2d.r | 14 ++--
Rwave-1.24-1/Rwave/R/robust.r | 5 +
Rwave-1.24-1/Rwave/data/Ekg.R |only
Rwave-1.24-1/Rwave/data/YN.R |only
Rwave-1.24-1/Rwave/data/YNdiff.R |only
Rwave-1.24-1/Rwave/man/Ekg.rd |only
Rwave-1.24-1/Rwave/man/YN.rd |only
Rwave-1.24-1/Rwave/man/YNdiff.rd |only
Rwave-1.24-1/Rwave/man/cwtp.rd | 112 ++++++++++++++++----------------
Rwave-1.24-1/Rwave/src/crazy_family.c | 35 +++++++---
Rwave-1.24/Rwave/data/ekg.R |only
Rwave-1.24/Rwave/data/yn.R |only
Rwave-1.24/Rwave/data/yndiff.R |only
Rwave-1.24/Rwave/man/ekg.rd |only
Rwave-1.24/Rwave/man/yn.rd |only
Rwave-1.24/Rwave/man/yndiff.rd |only
26 files changed, 138 insertions(+), 118 deletions(-)
Author: Uwe Ligges
Diff between RWinEdt versions 1.7-9 dated 2007-11-04 and 1.8-0 dated 2008-05-02
Title: R-WinEdt
Description: A plug in for using WinEdt as an editor for R
RWinEdt-1.7-9/RWinEdt/PasteToR |only
RWinEdt-1.7-9/RWinEdt/R/classes.S |only
RWinEdt-1.7-9/RWinEdt/R/path.S |only
RWinEdt-1.7-9/RWinEdt/R/registry.S |only
RWinEdt-1.7-9/RWinEdt/R/utilities.S |only
RWinEdt-1.7-9/RWinEdt/R/walk.S |only
RWinEdt-1.7-9/RWinEdt/man/createRegistryPath.Rd |only
RWinEdt-1.7-9/RWinEdt/src/RSCommon.h |only
RWinEdt-1.7-9/RWinEdt/src/getRegistry.c |only
RWinEdt-1.8-0/RWinEdt/DESCRIPTION | 15
RWinEdt-1.8-0/RWinEdt/NAMESPACE | 3
RWinEdt-1.8-0/RWinEdt/R/getWinEdt.R | 13
RWinEdt-1.8-0/RWinEdt/R/zzz.R | 2
RWinEdt-1.8-0/RWinEdt/inst/CHANGES | 29
RWinEdt-1.8-0/RWinEdt/inst/PlugIn/R.ini | 4787 ++++++++++++------------
RWinEdt-1.8-0/RWinEdt/inst/PlugIn/R.lst | 4619 ++++++++++++-----------
RWinEdt-1.8-0/RWinEdt/inst/PlugIn/R.ver | 2
RWinEdt-1.8-0/RWinEdt/inst/ReadMe.txt | 17
RWinEdt-1.8-0/RWinEdt/inst/doc/RWinEdt.pdf | 2503 ++++++------
RWinEdt-1.8-0/RWinEdt/man/WinEdt.Rd | 3
RWinEdt-1.8-0/RWinEdt/src/Makevars.win | 1
21 files changed, 6286 insertions(+), 5708 deletions(-)
Author: Uwe Ligges
Diff between scatterplot3d versions 0.3-25 dated 2007-09-14 and 0.3-26 dated 2008-05-02
Title: 3D Scatter Plot
Description: Plots a three dimensional (3D) point cloud.
CHANGES | 9
DESCRIPTION | 14
R/scatterplot3d.R | 14
inst/CITATION | 2
inst/doc/ligges.bib | 8
inst/doc/s3d.pdf | 2509 ++++++++++++++++++++--------------------
inst/doc/scatterplot3d-help.tex | 4
man/scatterplot3d.Rd | 8
po/R-de.po | 2
po/R-en.po | 2
10 files changed, 1326 insertions(+), 1246 deletions(-)
Author: Ingo Feinerer
Title: WordNet Interface
Description: An interface to WordNet using the Jawbone Java API to WordNet.
WordNet is an on-line lexical reference system developed by the Cognitive
Science Laboratory at Princeton University. Its design is inspired by current
psycholinguistic theories of human lexical memory. English nouns, verbs,
adjectives and adverbs are organized into synonym sets, each representing one
underlying lexical concept. Different relations link the synonym sets.
Diff between wordnet versions 0.1-2 dated 2008-02-07 and 0.1-3 dated 2008-05-02
wordnet-0.1-2/wordnet/inst/doc/wordnet.tex |only wordnet-0.1-3/wordnet/DESCRIPTION | 15 ++++++++---- wordnet-0.1-3/wordnet/R/dictionary.R | 15 +++++++----- wordnet-0.1-3/wordnet/R/onload.R | 2 - wordnet-0.1-3/wordnet/inst/CITATION | 8 +++++- wordnet-0.1-3/wordnet/inst/doc/wordnet.Rnw | 29 ++++++++++++++++++------- wordnet-0.1-3/wordnet/inst/doc/wordnet.pdf |binary wordnet-0.1-3/wordnet/man/getDict.Rd | 3 +- wordnet-0.1-3/wordnet/man/getDictInstance.Rd | 2 - wordnet-0.1-3/wordnet/man/getFilterTypes.Rd | 2 - wordnet-0.1-3/wordnet/man/getIndexTerms.Rd | 8 ++++-- wordnet-0.1-3/wordnet/man/getLemma.Rd | 10 +++++--- wordnet-0.1-3/wordnet/man/getRelatedSynsets.Rd | 14 ++++++------ wordnet-0.1-3/wordnet/man/getSynonyms.Rd | 10 +++++--- wordnet-0.1-3/wordnet/man/getSynsets.Rd | 10 +++++--- wordnet-0.1-3/wordnet/man/getTermFilter.Rd | 5 ++-- wordnet-0.1-3/wordnet/man/getWord.Rd | 14 ++++++------ wordnet-0.1-3/wordnet/man/initDict.Rd | 6 ++--- wordnet-0.1-3/wordnet/man/setDict.Rd | 2 - wordnet-0.1-3/wordnet/man/synonyms.Rd | 5 ++-- 20 files changed, 101 insertions(+), 59 deletions(-)
Author: Mark S. Handcock
Diff between statnet versions 2.0-7 dated 2008-04-18 and 2.1 dated 2008-05-02
Title: Software tools for the Statistical Modeling of Network Data
Description: An integrated set of tools for the representation, visualization, analysis and simulation of network data. This package For an introduction type: help(package='statnet')
statnet-2.0-7/statnet/R/install.statnet.R |only
statnet-2.0-7/statnet/man/install.statnet.Rd |only
statnet-2.1/statnet/DESCRIPTION | 8 ++---
statnet-2.1/statnet/R/zzz.R | 12 +++----
statnet-2.1/statnet/inst/CITATION | 43 +++++++++++++++------------
statnet-2.1/statnet/inst/CITATION.1 |only
statnet-2.1/statnet/inst/aaa |only
7 files changed, 34 insertions(+), 29 deletions(-)
Author: Sandy Eckel, Roger D. Peng
Title: A Set of Tools for Administering SHared Repositories
Description: A Set of Tools for Administering SHared Repositories
Diff between stashR versions 0.3-1 dated 2007-05-15 and 0.3-2 dated 2008-05-02
DESCRIPTION | 12 +++++--- NAMESPACE | 22 +++++++++++++-- R/init.R | 70 +++++++++++++++++++++++++------------------------- R/zzz.R | 42 +++++++++++++++--------------- tests/tests.Rout.save | 30 ++++++++++++--------- 5 files changed, 100 insertions(+), 76 deletions(-)
Author: Roger D. Peng
Diff between simpleboot versions 1.1-2 dated 2007-03-15 and 1.1-3 dated 2008-05-02
Title: Simple Bootstrap Routines
Description: Simple bootstrap routines
simpleboot-1.1-2/simpleboot/man/simpleboot-internal.Rd |only
simpleboot-1.1-3/simpleboot/DESCRIPTION | 12 +++++-------
simpleboot-1.1-3/simpleboot/R/zzz.R | 2 +-
simpleboot-1.1-3/simpleboot/tests/reg-tests.Rout.save | 6 +++---
4 files changed, 9 insertions(+), 11 deletions(-)
Author: Duncan Temple Lang
Diff between rggobi versions 2.1.8-4 dated 2008-04-04 and 2.1.9 dated 2008-05-02
Title: Interface between R and GGobi
Description: The rggobi package provides a command-line interface to GGobi, an interactive and dynamic graphics package. Rggobi complements GGobi's graphical user interface, providing a way to fluidly transition between analysis and exploration, as well as automating common tasks.
DESCRIPTION | 8 ++++----
R/data.r | 2 --
src/display.c | 5 +++--
3 files changed, 7 insertions(+), 8 deletions(-)
Author: Tristen Hayfield
Diff between np versions 0.14-2 dated 2008-01-11 and 0.14-3 dated 2008-05-02
Title: Nonparametric kernel smoothing methods for mixed datatypes
Description: This package provides a variety of nonparametric (and semiparametric) kernel methods that seamlessly handle a mix of continuous, unordered, and ordered factor datatypes. We would like to gratefully acknowledge support from the Natural Sciences and Engineering Research Council of Canada (NSERC:www.nserc.ca), the Social Sciences and Humanities Research Council of Canada (SSHRC:www.sshrc.ca), and the Shared Hierarchical Academic Research Computing Network (SHARCNET:www.sharcnet.ca).
CHANGELOG | 13 +++----------
DESCRIPTION | 6 +++---
R/zzz.R | 2 +-
man/np.cmstest.Rd | 8 ++++----
man/np.regression.Rd | 7 +++----
man/np.regression.bw.Rd | 7 +++----
man/np.smoothcoef.Rd | 6 +++---
man/np.smoothcoef.bw.Rd | 6 +++---
src/headers.h | 2 +-
src/kernelcv.c | 7 +++++++
src/statmods.c | 39 +++++++++++++++++++++++++++++++++++++++
11 files changed, 70 insertions(+), 33 deletions(-)
Author: Alexis Dinno
Diff between paran versions 1.3.5 dated 2008-04-09 and 1.3.6 dated 2008-05-02
Title: Horn's Test of Principal Components/Factors
Description: paran is an implementation of Horn's technique for numerically and graphically evaluating the components or factors retained in a principle components analysis (PCA) or common factor analysis (FA). Horn's method contrasts eigenvalues produced through a PCA or FA on a number of random data sets of uncorrelated variables with the same number of variables and observations as the experimental or observational data set to produce eigenvalues for components or factors that are adjusted for the sample error-induced inflation. Components with adjusted eigenvalues greater than one are retained. paran may also be used to conduct parallel analysis following Glorfeld's (1995) suggestions to reduce the likelihood of over-retention.
DESCRIPTION | 10 +++----
R/paran.R | 80 +++++++++++++++++++++++------------------------------------
man/paran.Rd | 10 ++-----
3 files changed, 41 insertions(+), 59 deletions(-)
Author: William Constantine (Insightful Corporation)
Title: Insightful Research Tools
Description: Insightful Research Tools.
Diff between ifultools versions 1.0-5 dated 2008-03-06 and 1.0-6 dated 2008-05-02
ifultools-1.0-5/ifultools/.Data |only ifultools-1.0-5/ifultools/Makefile.temp |only ifultools-1.0-5/ifultools/inst/bookexams |only ifultools-1.0-5/ifultools/inst/doc |only ifultools-1.0-6/ifultools/DESCRIPTION | 24 ++++++++++----------- ifultools-1.0-6/ifultools/R/it_util.q | 2 - ifultools-1.0-6/ifultools/inst/include/fra_dim.h | 2 - ifultools-1.0-6/ifultools/inst/include/fra_fdp.h | 2 - ifultools-1.0-6/ifultools/inst/include/fra_filt.h | 2 - ifultools-1.0-6/ifultools/inst/include/fra_kde.h | 2 - ifultools-1.0-6/ifultools/inst/include/fra_lyap.h | 2 - ifultools-1.0-6/ifultools/inst/include/fra_mac.h | 2 - ifultools-1.0-6/ifultools/inst/include/fra_modl.h | 2 - ifultools-1.0-6/ifultools/inst/include/fra_neig.h | 2 - ifultools-1.0-6/ifultools/inst/include/fra_scale.h | 2 - ifultools-1.0-6/ifultools/inst/include/fra_sdf.h | 2 - ifultools-1.0-6/ifultools/inst/include/fra_stat.h | 2 - ifultools-1.0-6/ifultools/inst/include/fra_surr.h | 2 - ifultools-1.0-6/ifultools/inst/include/fra_tdmi.h | 2 - ifultools-1.0-6/ifultools/inst/include/fra_type.h | 2 - ifultools-1.0-6/ifultools/inst/include/img_type.h | 2 - ifultools-1.0-6/ifultools/inst/include/mat_any.h | 2 - ifultools-1.0-6/ifultools/inst/include/mat_arit.h | 2 - ifultools-1.0-6/ifultools/inst/include/mat_assn.h | 2 - ifultools-1.0-6/ifultools/inst/include/mat_bits.h | 2 - ifultools-1.0-6/ifultools/inst/include/mat_cast.h | 2 - ifultools-1.0-6/ifultools/inst/include/mat_comp.h | 2 - ifultools-1.0-6/ifultools/inst/include/mat_intp.h | 2 - ifultools-1.0-6/ifultools/inst/include/mat_intr.h | 2 - ifultools-1.0-6/ifultools/inst/include/mat_io.h | 2 - ifultools-1.0-6/ifultools/inst/include/mat_iter.h | 2 - ifultools-1.0-6/ifultools/inst/include/mat_log.h | 2 - ifultools-1.0-6/ifultools/inst/include/mat_nnls.h | 2 - ifultools-1.0-6/ifultools/inst/include/mat_num.h | 2 - ifultools-1.0-6/ifultools/inst/include/mat_pca.h | 2 - ifultools-1.0-6/ifultools/inst/include/mat_rand.h | 2 - ifultools-1.0-6/ifultools/inst/include/mat_set.h | 2 - ifultools-1.0-6/ifultools/inst/include/mat_snr.h | 2 - ifultools-1.0-6/ifultools/inst/include/mat_sort.h | 2 - ifultools-1.0-6/ifultools/inst/include/mat_stat.h | 2 - ifultools-1.0-6/ifultools/inst/include/mat_summ.h | 2 - ifultools-1.0-6/ifultools/inst/include/mat_thr.h | 2 - ifultools-1.0-6/ifultools/inst/include/mat_tile.h | 2 - ifultools-1.0-6/ifultools/inst/include/mat_type.h | 2 - ifultools-1.0-6/ifultools/inst/include/mat_umat.h | 2 - ifultools-1.0-6/ifultools/inst/include/mat_univ.h | 2 - ifultools-1.0-6/ifultools/inst/include/mat_usca.h | 2 - ifultools-1.0-6/ifultools/inst/include/mth_dist.h | 2 - ifultools-1.0-6/ifultools/inst/include/mth_mac.h | 2 - ifultools-1.0-6/ifultools/inst/include/mth_stat.h | 2 - ifultools-1.0-6/ifultools/inst/include/mth_var.h | 2 - ifultools-1.0-6/ifultools/inst/include/sig_conv.h | 2 - ifultools-1.0-6/ifultools/inst/include/sig_tran.h | 2 - ifultools-1.0-6/ifultools/inst/include/sig_type.h | 2 - ifultools-1.0-6/ifultools/inst/include/sig_win.h | 2 - ifultools-1.0-6/ifultools/inst/include/str_type.h | 2 - ifultools-1.0-6/ifultools/inst/include/ut_RS.h | 2 - ifultools-1.0-6/ifultools/inst/include/ut_alloc.h | 2 - ifultools-1.0-6/ifultools/inst/include/ut_debug.h | 2 - ifultools-1.0-6/ifultools/inst/include/ut_err.h | 2 - ifultools-1.0-6/ifultools/inst/include/ut_intrn.h | 2 - ifultools-1.0-6/ifultools/inst/include/ut_intrp.h | 2 - ifultools-1.0-6/ifultools/inst/include/ut_io.h | 2 - ifultools-1.0-6/ifultools/inst/include/ut_kdtr.h | 2 - ifultools-1.0-6/ifultools/inst/include/ut_limit.h | 2 - ifultools-1.0-6/ifultools/inst/include/ut_math.h | 2 - ifultools-1.0-6/ifultools/inst/include/ut_mem.h | 2 - ifultools-1.0-6/ifultools/inst/include/ut_mtlb6.h | 2 - ifultools-1.0-6/ifultools/inst/include/ut_plat.h | 2 - ifultools-1.0-6/ifultools/inst/include/ut_rand.h | 2 - ifultools-1.0-6/ifultools/inst/include/ut_spls5.h | 2 - ifultools-1.0-6/ifultools/inst/include/ut_type.h | 2 - ifultools-1.0-6/ifultools/inst/include/wav_boot.h | 2 - ifultools-1.0-6/ifultools/inst/include/wav_cwt.h | 2 - ifultools-1.0-6/ifultools/inst/include/wav_dwt.h | 2 - ifultools-1.0-6/ifultools/inst/include/wav_dwtc.h | 2 - ifultools-1.0-6/ifultools/inst/include/wav_fdp.h | 2 - ifultools-1.0-6/ifultools/inst/include/wav_filt.h | 2 - ifultools-1.0-6/ifultools/inst/include/wav_gbr.h | 2 - ifultools-1.0-6/ifultools/inst/include/wav_hmt.h | 2 - ifultools-1.0-6/ifultools/inst/include/wav_mac.h | 2 - ifultools-1.0-6/ifultools/inst/include/wav_modw.h | 2 - ifultools-1.0-6/ifultools/inst/include/wav_shrk.h | 2 - ifultools-1.0-6/ifultools/inst/include/wav_type.h | 2 - ifultools-1.0-6/ifultools/inst/include/wav_var.h | 2 - ifultools-1.0-6/ifultools/inst/include/wav_wtmm.h | 2 - ifultools-1.0-6/ifultools/src/RS_fra_dim.c | 2 - ifultools-1.0-6/ifultools/src/RS_fra_fdp.c | 2 - ifultools-1.0-6/ifultools/src/RS_fra_filt.c | 2 - ifultools-1.0-6/ifultools/src/RS_fra_kde.c | 2 - ifultools-1.0-6/ifultools/src/RS_fra_lyap.c | 2 - ifultools-1.0-6/ifultools/src/RS_fra_modl.c | 2 - ifultools-1.0-6/ifultools/src/RS_fra_neig.c | 2 - ifultools-1.0-6/ifultools/src/RS_fra_scale.c | 2 - ifultools-1.0-6/ifultools/src/RS_fra_sdf.c | 2 - ifultools-1.0-6/ifultools/src/RS_fra_stat.c | 2 - ifultools-1.0-6/ifultools/src/RS_fra_surr.c | 2 - ifultools-1.0-6/ifultools/src/RS_fra_tdmi.c | 2 - ifultools-1.0-6/ifultools/src/RS_mac.h | 2 - ifultools-1.0-6/ifultools/src/RS_math_acvs.c | 2 - ifultools-1.0-6/ifultools/src/RS_sig_conv.c | 2 - ifultools-1.0-6/ifultools/src/RS_sig_win.c | 2 - ifultools-1.0-6/ifultools/src/RS_wav_boot.c | 2 - ifultools-1.0-6/ifultools/src/RS_wav_fdp.c | 2 - ifultools-1.0-6/ifultools/src/RS_wav_filt.c | 2 - ifultools-1.0-6/ifultools/src/RS_wav_mrd.c | 2 - ifultools-1.0-6/ifultools/src/RS_wav_shrk.c | 2 - ifultools-1.0-6/ifultools/src/RS_wav_var.c | 2 - ifultools-1.0-6/ifultools/src/RS_wav_wtmm.c | 2 - ifultools-1.0-6/ifultools/src/RS_wav_xform.c | 2 - ifultools-1.0-6/ifultools/src/fra_dim.c | 2 - ifultools-1.0-6/ifultools/src/fra_fdp.c | 2 - ifultools-1.0-6/ifultools/src/fra_filt.c | 2 - ifultools-1.0-6/ifultools/src/fra_kde.c | 2 - ifultools-1.0-6/ifultools/src/fra_lyap.c | 2 - ifultools-1.0-6/ifultools/src/fra_modl.c | 2 - ifultools-1.0-6/ifultools/src/fra_neig.c | 2 - ifultools-1.0-6/ifultools/src/fra_scale.c | 2 - ifultools-1.0-6/ifultools/src/fra_sdf.c | 2 - ifultools-1.0-6/ifultools/src/fra_stat.c | 2 - ifultools-1.0-6/ifultools/src/fra_surr.c | 2 - ifultools-1.0-6/ifultools/src/fra_tdmi.c | 2 - ifultools-1.0-6/ifultools/src/fra_util.c | 2 - ifultools-1.0-6/ifultools/src/fra_util.h | 2 - ifultools-1.0-6/ifultools/src/mat_arit.c | 2 - ifultools-1.0-6/ifultools/src/mat_assn.c | 2 - ifultools-1.0-6/ifultools/src/mat_cast.c | 2 - ifultools-1.0-6/ifultools/src/mat_comp.c | 2 - ifultools-1.0-6/ifultools/src/mat_num.c | 2 - ifultools-1.0-6/ifultools/src/mat_rand.c | 2 - ifultools-1.0-6/ifultools/src/mat_set.c | 2 - ifultools-1.0-6/ifultools/src/mat_sort.c | 2 - ifultools-1.0-6/ifultools/src/mat_stat.c | 2 - ifultools-1.0-6/ifultools/src/mat_summ.c | 2 - ifultools-1.0-6/ifultools/src/mat_tmpl.h | 2 - ifultools-1.0-6/ifultools/src/mat_univ.c | 2 - ifultools-1.0-6/ifultools/src/mth_dist.c | 2 - ifultools-1.0-6/ifultools/src/mth_stat.c | 2 - ifultools-1.0-6/ifultools/src/mth_var.c | 2 - ifultools-1.0-6/ifultools/src/sig_conv.c | 2 - ifultools-1.0-6/ifultools/src/sig_tran.c | 2 - ifultools-1.0-6/ifultools/src/sig_win.c | 2 - ifultools-1.0-6/ifultools/src/ut_RS.c | 2 - ifultools-1.0-6/ifultools/src/ut_alloc.c | 2 - ifultools-1.0-6/ifultools/src/ut_debug.c | 2 - ifultools-1.0-6/ifultools/src/ut_err.c | 2 - ifultools-1.0-6/ifultools/src/ut_intrp.c | 2 - ifultools-1.0-6/ifultools/src/ut_kdtr.c | 2 - ifultools-1.0-6/ifultools/src/ut_mem.c | 2 - ifultools-1.0-6/ifultools/src/ut_rand.c | 2 - ifultools-1.0-6/ifultools/src/wav_boot.c | 2 - ifultools-1.0-6/ifultools/src/wav_cwt.c | 2 - ifultools-1.0-6/ifultools/src/wav_dwtc.c | 2 - ifultools-1.0-6/ifultools/src/wav_fdp.c | 2 - ifultools-1.0-6/ifultools/src/wav_filt.c | 2 - ifultools-1.0-6/ifultools/src/wav_look.c | 2 - ifultools-1.0-6/ifultools/src/wav_look.h | 2 - ifultools-1.0-6/ifultools/src/wav_math.c | 2 - ifultools-1.0-6/ifultools/src/wav_math.h | 2 - ifultools-1.0-6/ifultools/src/wav_modw.c | 2 - ifultools-1.0-6/ifultools/src/wav_shrk.c | 2 - ifultools-1.0-6/ifultools/src/wav_var.c | 2 - ifultools-1.0-6/ifultools/src/wav_wtmm.c | 2 - 163 files changed, 170 insertions(+), 170 deletions(-)
Author: Roger D. Peng
Diff between gpclib versions 1.4-1 dated 2007-02-28 and 1.4-2 dated 2008-05-02
Title: General Polygon Clipping Library for R
Description: General polygon clipping routines for R based on Alan Murta's C library
DESCRIPTION | 8 ++++----
tests/reg-tests.Rout.save | 6 +++---
2 files changed, 7 insertions(+), 7 deletions(-)
Author: Søren Højsgaard
Diff between gRbase versions 0.4.0 dated 2008-04-27 and 0.4.1 dated 2008-05-02
Title: A package for graphical modelling in R
Description: This package defines S3-classes gmData (graphical meta data), gModel (graphical model). Several other graphical modelling packages rely on these fundamental constructs. gRbase illustrates how hierarchical log-linear models (hllm) may be implemented.
gRbase-0.4.0/gRbase/inst/doc/gRbase.aux |only
gRbase-0.4.0/gRbase/inst/doc/gRbase.bbl |only
gRbase-0.4.0/gRbase/inst/doc/gRbase.blg |only
gRbase-0.4.0/gRbase/inst/doc/gRbase.log |only
gRbase-0.4.0/gRbase/inst/doc/gRbase.tex |only
gRbase-0.4.1/gRbase/ChangeLog | 7 +++++++
gRbase-0.4.1/gRbase/DESCRIPTION | 4 ++--
gRbase-0.4.1/gRbase/inst/doc/gRbase.pdf |binary
8 files changed, 9 insertions(+), 2 deletions(-)
Author: Søren Højsgaard
Diff between gRain versions 0.3.0 dated 2008-03-28 and 0.3.1 dated 2008-05-02
Title: Graphical Independence Networks
Description: A package for probability propagation in graphical independence networks, also known as probabilistic expert systems (which includes Bayesian networks as a special case).
ChangeLog | 12 ++++++++
DESCRIPTION | 4 +-
NAMESPACE | 1
R/Graphsh-GraphConversion.R | 10 ++++---
R/Graphsh-mcs-moral-rip.R | 8 ++---
R/Graphsh-triangulate.R | 7 +++++
R/TabOpArray.R | 26 +++++++++++++++++++
R/allClasses-Graphsh.R | 11 ++++----
R/gmInstance.R | 3 +-
R/xxx2yyy.R | 60 ++++++++++++++++++++++----------------------
Wishlist.txt | 7 -----
inst/doc/fig |only
inst/doc/gRain-intro.R |only
inst/doc/gRain-intro.Rnw |only
inst/doc/gRain-intro.pdf |only
inst/doc/gRain.bib |only
inst/doc/gRain.pdf |binary
inst/doc/gRash.pdf |binary
inst/doc/gRpotential.pdf |binary
man/internal-gRain.Rd | 1
man/predict.Rd | 1
21 files changed, 96 insertions(+), 55 deletions(-)
Author: Roger D. Peng
Diff between filehash versions 1.0-1 dated 2007-08-13 and 1.1 dated 2008-05-02
Title: Simple key-value database
Description: Simple key-value database
DESCRIPTION | 11
R/filehash-DB1.R | 539 ++++++++++++++-------------
R/filehash-RDS.R | 148 ++++---
R/zzz.R | 2
inst/NEWS | 3
inst/doc/filehash.pdf |binary
man/filehash-class.Rd | 6
tests/reg-tests.R | 88 ----
tests/reg-tests.Rout.save | 892 +---------------------------------------------
9 files changed, 409 insertions(+), 1280 deletions(-)
Author: Jeff Hallman
Diff between fame versions 1.10 dated 2008-04-29 and 1.11 dated 2008-05-02
Title: Interface for FAME time series database
Description: Includes FAME storage and retrieval function, as well as functions and S3 classes for time indexes and time indexed series, which are compatible with FAME frequencies.
DESCRIPTION | 4 ++--
NAMESPACE | 6 +++---
2 files changed, 5 insertions(+), 5 deletions(-)
Author: Virasakdi Chongsuvivatwong
Diff between epicalc versions 2.7.0.1 dated 2008-04-27 and 2.7.0.2 dated 2008-05-02
Title: Epidemiological calculator
Description: Functions making R easy for epidemiological calculation.
DESCRIPTION | 6
R/epicalc.R | 307 ++++++++++++++++++++++++++++----------------------
man/aggregate.plot.rd | 33 +++--
man/followup.plot.rd | 11 +
4 files changed, 211 insertions(+), 146 deletions(-)
Author: Micah Altman, Akio Sone
Title: utilities supporting the VDC system
Description: The VDC system is an open source digital library system for
quantitative data. This is a package to support on-line analysis using
VDC and Zelig, accuracy, and R2HTML
Diff between VDCutil versions 1.14 dated 2007-10-02 and 1.15 dated 2008-05-02
CHANGELOG | 2 +- DESCRIPTION | 8 ++++---- R/genAn.R | 8 ++++++-- inst/CITATION | 4 ++-- man/printVDCxtabs.Rd | 2 +- 5 files changed, 14 insertions(+), 10 deletions(-)
Author: Didier Leibovici
Diff between PTAk versions 1.1-16 dated 2007-09-21 and 1.1-17 dated 2008-05-02
Title: Principal Tensor Analysis on k modes
Description: A multiway method to decompose a tensor (array) of any order,
as a generalisation of SVD also supporting non-identity metrics and penalisations.
2-way SVD with these extensions is also available. The package includes also some other multiway
methods: PCAn (Tucker-n) and PARAFAC/CANDECOMP with these extensions.
DESCRIPTION | 12 +-
LICENSE | 56 ++++--------
R/PTAk.R | 224 +++++++++++++++++++++++++++++++++++----------------
data/crimerate.RData |binary
data/timage12.RData |binary
inst |only
man/CANDPARA.Rd | 2
man/CauRuimet.Rd | 30 ++++--
man/FCAk.Rd | 19 ++--
man/FCAmet.Rd | 3
man/PROJOT.Rd | 18 ++--
man/PTA3.Rd | 9 --
man/PTAk.Rd | 45 +++++++---
man/SINGVA.Rd | 18 ++--
man/SVDgen.Rd | 12 +-
man/howtoPTAk.Rd | 2
16 files changed, 280 insertions(+), 170 deletions(-)
Author: Bendix Carstensen, Martyn Plummer, Esa Laara, Michael Hills et. al.
Title: A package for statistical analysis in epidemiology.
Description: Functions for demographic and epidemiological
analysis in the Lexis diagram, i.e. register and cohort follow-up
data, including interval censored data and representation of
multistate data. Also some useful functions for tabulation and
plotting. Contains some epidemiological datasets.
Diff between Epi versions 1.0.7 dated 2008-01-11 and 1.0.8 dated 2008-05-02
Epi-1.0.7/Epi/R/tab.Lexis.r |only Epi-1.0.7/Epi/README |only Epi-1.0.7/Epi/man/tab.Lexis.Rd |only Epi-1.0.8/Epi/CHANGES | 12 ++++++ Epi-1.0.8/Epi/DESCRIPTION | 6 +-- Epi-1.0.8/Epi/NAMESPACE | 7 ++- Epi-1.0.8/Epi/R/ci.pd.R | 2 - Epi-1.0.8/Epi/R/lexis.R | 7 +++ Epi-1.0.8/Epi/R/stattable.R | 4 +- Epi-1.0.8/Epi/R/summary.Lexis.r |only Epi-1.0.8/Epi/man/Lexis.Rd | 14 +++---- Epi-1.0.8/Epi/man/ci.cum.Rd | 4 +- Epi-1.0.8/Epi/man/cutLexis.Rd | 4 +- Epi-1.0.8/Epi/man/float.Rd | 70 +++++++++++++++++++------------------ Epi-1.0.8/Epi/man/splitLexis.Rd | 4 +- Epi-1.0.8/Epi/man/summary.Lexis.rd |only 16 files changed, 79 insertions(+), 55 deletions(-)
Author: Ravi Varadhan
Title: Solving and optimizing large-scale nonlinear systems
Description: Barzilai-Borwein Spectral Methods for solving nonlinear system of
equations, and for optimizing nonlinear objective functions subject to simple
constraints.
Diff between BB versions 2008.4-1 dated 2008-04-22 and 2008.5-1 dated 2008-05-02
DESCRIPTION | 8 ++++---- NEWS |only R/spg.R | 9 +++++++-- inst/CITATION |only inst/doc/BB.pdf |binary man/dfsane.Rd | 10 ++++++++-- man/sane.Rd | 10 ++++++++-- man/spg.Rd | 26 ++++++++++++++++++-------- tests/sc2.R | 28 ++++++++++++++++++++++++++++ 9 files changed, 73 insertions(+), 18 deletions(-)
Author: Ramon Diaz-Uriarte
Diff between ADaCGH versions 1.3-4 dated 2007-10-04 and 1.3-7 dated 2008-05-02
Title: Analysis of data from aCGH experiments
Description: Analysis and plotting of array CGH data. Allows usage of
Circular Binary Segementation, wavelet-based smoothing, ACE
method (CGH Explorer), HMM, BioHMM, GLAD, CGHseg, and Price's modification of Smith &
Waterman's algorith. Most computations are
parallelized. Figures are imagemaps with links to IDClight
(http://idclight.bioinfo.cnio.es).
ADaCGH-1.3-4/ADaCGH/inst/Python/semantic.cache |only
ADaCGH-1.3-7/ADaCGH/Changes | 14 +
ADaCGH-1.3-7/ADaCGH/DESCRIPTION | 8 -
ADaCGH-1.3-7/ADaCGH/R/ADaCGH.R | 182 ++++++++++++++++---------
ADaCGH-1.3-7/ADaCGH/README.INSTALL | 11 -
ADaCGH-1.3-7/ADaCGH/man/mpiInit.Rd | 8 -
6 files changed, 148 insertions(+), 75 deletions(-)