Package: singlecase
Type: Package
Title: statistical tests for single case studies in neuropsychology
Version: 0.1
Date: 2008-05-07
Author: Matthieu Dubois
Maintainer: Matthieu Dubois
Description: The singlecase package implements various functions for the single-case research in neuropsychology. Currently, the functions that are implemented were all originally developed by John Crawford, Paul Garthwaite and colleagues. These functions mainly deal with the comparison of a patient's test score (or score difference) to a control or normative sample. These methods also provide a point estimate of the percentage of the population that would obtain a more extreme score (or score difference) and, for some problems, an accompanying interval estimate (i.e., confidence limits) on this percentage.
License: GPL version 2 or newer
URL: http://www.code.ucl.ac.be/MatthieuDubois/r_code.html
Packaged: Wed May 7 16:55:50 2008; hornik
More information about singlecase at CRAN
posted at: 13:19 | path: /cran/new | permanent link to this entry
Package neuralnet updated to version 1.1 with previous version 1.0 dated 2008-04-15
Author: Stefan Fritsch
Diff between neuralnet versions 1.0 dated 2008-04-15 and 1.1 dated 2008-05-07
More information about neuralnet at CRAN
Package gnm updated to version 0.9-4 with previous version 0.9-3 dated 2007-09-10 Author: Heather Turner and David Firth
Diff between gnm versions 0.9-3 dated 2007-09-10 and 0.9-4 dated 2008-05-07
More information about gnm at CRAN
Package gRc updated to version 0.2.1 with previous version 0.2.0 dated 2008-04-25 Author: Søren Højsgaard
Diff between gRc versions 0.2.0 dated 2008-04-25 and 0.2.1 dated 2008-05-07
More information about gRc at CRAN
Package gRain updated to version 0.3.2 with previous version 0.3.1 dated 2008-05-02 Author: Søren Højsgaard
Diff between gRain versions 0.3.1 dated 2008-05-02 and 0.3.2 dated 2008-05-07
More information about gRain at CRAN
New package empiricalBayes with initial version 2.0
More information about empiricalBayes at CRAN
Package XML updated to version 1.95-1 with previous version 1.93-2 dated 2007-10-03 Author: Duncan Temple Lang (duncan@wald.ucdavis.edu)
Diff between XML versions 1.93-2 dated 2007-10-03 and 1.95-1 dated 2008-05-07
More information about XML at CRAN
Package GenABEL updated to version 1.3-9 with previous version 1.3-7 dated 2008-04-17 Author: Yurii Aulchenko, Maksim Struchalin, with contributions from
Stephan Ripke and Toby Johnson
Diff between GenABEL versions 1.3-7 dated 2008-04-17 and 1.3-9 dated 2008-05-07
More information about GenABEL at CRAN
Package lpSolve updated to version 5.6.2 with previous version 5.6.1 dated 2008-04-28 Author: Michel Berkelaar and others
Diff between lpSolve versions 5.6.1 dated 2008-04-28 and 5.6.2 dated 2008-05-07
More information about lpSolve at CRAN
Package knncat updated to version 1.1.11 with previous version 1.1.10 dated 2006-05-29 Author: Sam Buttrey
Diff between knncat versions 1.1.10 dated 2006-05-29 and 1.1.11 dated 2008-05-07
More information about knncat at CRAN
Package knnTree updated to version 1.2.4 with previous version 1.2.3 dated 2004-11-16 Author: Sam Buttrey
Diff between knnTree versions 1.2.3 dated 2004-11-16 and 1.2.4 dated 2008-05-07
More information about knnTree at CRAN
Package Rsac updated to version 0.1-6 with previous version 0.1-5 dated 2007-10-14 Author: Eric M. Thompson
Diff between Rsac versions 0.1-5 dated 2007-10-14 and 0.1-6 dated 2008-05-07
More information about Rsac at CRAN
Title: Training of neural networks
Description: Training of neural networks using the Resilient Backpropagation with (Riedmiller, 1994) or without Weightbacktracking (Riedmiller, 1993) or the modified globally convergent version by Anastasiadis et. al. (2005). The package allows flexible settings through custom-choice of error- and activation-function. Furthermore the calculation of generalized weights (Intrator O & Intrator N, 1993) is implemented.
DESCRIPTION | 8 ++++----
R/plot.nn.r | 2 +-
man/neuralnet-package.Rd | 4 ++--
3 files changed, 7 insertions(+), 7 deletions(-)
posted at: 13:19 | path: /cran/updated | permanent link to this entry
Title: Generalized Nonlinear Models
Description: Functions to specify and fit generalized nonlinear models, including models with multiplicative interaction terms such as the UNIDIFF model from sociology and the AMMI model from crop science, and many others. Over-parameterized representations of models are used throughout; functions are provided for inference on estimable parameter combinations, as well as standard methods for diagnostics etc.
gnm-0.9-3/gnm/R/DrefVariables.R |only
gnm-0.9-3/gnm/inst/CHANGES |only
gnm-0.9-3/gnm/inst/doc/gnmOverview.Rnw |only
gnm-0.9-3/gnm/man/Log.Rd |only
gnm-0.9-3/gnm/man/Logit.Rd |only
gnm-0.9-3/gnm/man/Raise.Rd |only
gnm-0.9-4/gnm/.directory |only
gnm-0.9-4/gnm/DESCRIPTION | 28
gnm-0.9-4/gnm/NAMESPACE | 13
gnm-0.9-4/gnm/R/Const.R | 10
gnm-0.9-4/gnm/R/Diag.R | 11
gnm-0.9-4/gnm/R/Exp.R | 3
gnm-0.9-4/gnm/R/Inv.R | 17
gnm-0.9-4/gnm/R/Log.R | 17
gnm-0.9-4/gnm/R/Logit.R | 17
gnm-0.9-4/gnm/R/Mult.R | 6
gnm-0.9-4/gnm/R/MultHomog.R | 21
gnm-0.9-4/gnm/R/Nonlin.R | 6
gnm-0.9-4/gnm/R/Raise.R | 17
gnm-0.9-4/gnm/R/Symm.R | 17
gnm-0.9-4/gnm/R/anova.gnm.R | 40
gnm-0.9-4/gnm/R/asGnm.glm.R | 1
gnm-0.9-4/gnm/R/asGnm.lm.R | 1
gnm-0.9-4/gnm/R/checkCall.R | 12
gnm-0.9-4/gnm/R/cholInv.R | 156 -
gnm-0.9-4/gnm/R/cholInv1.R | 68
gnm-0.9-4/gnm/R/confint.gnm.R | 26
gnm-0.9-4/gnm/R/confint.profile.gnm.R | 50
gnm-0.9-4/gnm/R/fitted.gnm.R |only
gnm-0.9-4/gnm/R/getData.R | 12
gnm-0.9-4/gnm/R/gnm.R | 75
gnm-0.9-4/gnm/R/gnmStart.R | 8
gnm-0.9-4/gnm/R/gnmTerms.R | 25
gnm-0.9-4/gnm/R/gnmTools.R | 23
gnm-0.9-4/gnm/R/hashSplit.R | 42
gnm-0.9-4/gnm/R/hatvalues.gnm.R | 4
gnm-0.9-4/gnm/R/instances.R | 22
gnm-0.9-4/gnm/R/nonlinTerms.R | 421 +--
gnm-0.9-4/gnm/R/ofInterest.R | 6
gnm-0.9-4/gnm/R/ofInterestReplacement.R | 22
gnm-0.9-4/gnm/R/parameters.R | 4
gnm-0.9-4/gnm/R/pickCoef.R | 48
gnm-0.9-4/gnm/R/plot.gnm.R | 96
gnm-0.9-4/gnm/R/plot.profile.gnm.R | 42
gnm-0.9-4/gnm/R/predict.gnm.R | 94
gnm-0.9-4/gnm/R/print.gnm.R | 7
gnm-0.9-4/gnm/R/print.profile.gnm.R | 29
gnm-0.9-4/gnm/R/print.summary.gnm.R | 18
gnm-0.9-4/gnm/R/profile.gnm.R | 276 +-
gnm-0.9-4/gnm/R/qrSolve.R | 78
gnm-0.9-4/gnm/R/residuals.gnm.R | 12
gnm-0.9-4/gnm/R/rstandard.gnm.R | 2
gnm-0.9-4/gnm/R/sumExpression.R | 14
gnm-0.9-4/gnm/R/termPredictors.gnm.R | 11
gnm-0.9-4/gnm/R/weighted.MM.R | 22
gnm-0.9-4/gnm/R/weights.gnm.R |only
gnm-0.9-4/gnm/R/zzz.R | 6
gnm-0.9-4/gnm/demo/gnm.R | 64
gnm-0.9-4/gnm/inst/.directory |only
gnm-0.9-4/gnm/inst/CITATION | 32
gnm-0.9-4/gnm/inst/NEWS |only
gnm-0.9-4/gnm/inst/doc/.directory |only
gnm-0.9-4/gnm/inst/doc/gnmOverview.pdf | 3630 ++++++++++++++----------------
gnm-0.9-4/gnm/man/Const.Rd | 78
gnm-0.9-4/gnm/man/Exp.Rd | 94
gnm-0.9-4/gnm/man/Inv.Rd | 100
gnm-0.9-4/gnm/man/confint.gnm.Rd | 212 -
gnm-0.9-4/gnm/man/gnm.Rd | 20
gnm-0.9-4/gnm/man/instances.Rd | 90
gnm-0.9-4/gnm/man/model.matrix.gnm.Rd | 64
gnm-0.9-4/gnm/man/nonlin.function.Rd | 353 +-
gnm-0.9-4/gnm/man/ofInterest.Rd | 130 -
gnm-0.9-4/gnm/man/parameters.Rd | 66
gnm-0.9-4/gnm/man/pickCoef.Rd | 122 -
gnm-0.9-4/gnm/man/predict.gnm.Rd |only
gnm-0.9-4/gnm/man/profile.gnm.Rd | 362 +-
gnm-0.9-4/gnm/man/qrSolve.Rd | 122 -
gnm-0.9-4/gnm/tests/RC.Rout.save | 94
gnm-0.9-4/gnm/tests/RChomog.Rout.save | 96
gnm-0.9-4/gnm/tests/biplot.Rout.save | 70
gnm-0.9-4/gnm/tests/diagonalRef.Rout.save | 100
gnm-0.9-4/gnm/tests/gammi.Rout.save | 76
gnm-0.9-4/gnm/tests/nls.R | 18
gnm-0.9-4/gnm/tests/stereotype.Rout.save | 96
gnm-0.9-4/gnm/tests/unidiff.Rout.save | 84
85 files changed, 4118 insertions(+), 4011 deletions(-)
posted at: 13:18 | path: /cran/updated | permanent link to this entry
Title: Inference in Graphical Gaussian Models with Edge and Vertex Symmetries
Description: Estimation, model selection and other aspects of statistical inference in Graphical Gaussian models with edge and vertex symmetries (Graphical Gaussian models with colours)
gRc-0.2.0/gRc/src/rconipm.c |only
gRc-0.2.1/gRc/ChangeLog | 6 +
gRc-0.2.1/gRc/DESCRIPTION | 4
gRc-0.2.1/gRc/R/getScoreAndInformation4.R | 1
gRc-0.2.1/gRc/R/rcox-Scoring.R | 7 +
gRc-0.2.1/gRc/R/sets-SetOp-Lists.R | 44 -------
gRc-0.2.1/gRc/R/switchThetaK4.R | 84 +++++++++++++++
gRc-0.2.1/gRc/R/xxx2yyy.R | 20 +--
gRc-0.2.1/gRc/src/clevertrace.c | 118 ++++++++++-----------
gRc-0.2.1/gRc/src/rconipm2.c |only
gRc-0.2.1/gRc/src/shd_utils.c | 167 +++++++++++++++++++++++-------
gRc-0.2.1/gRc/src/shd_utils.h | 5
12 files changed, 304 insertions(+), 152 deletions(-)
posted at: 13:18 | path: /cran/updated | permanent link to this entry
Title: Graphical Independence Networks
Description: A package for probability propagation in graphical independence networks, also known as probabilistic expert systems (which includes Bayesian networks as a special case).
ChangeLog | 6 ++++++
DESCRIPTION | 4 ++--
inst/doc/gRain-intro.pdf |binary
3 files changed, 8 insertions(+), 2 deletions(-)
posted at: 13:18 | path: /cran/updated | permanent link to this entry
Bundle: empiricalBayes
Contains: HighProbability localFDR
Version: 2.0
Date: 2008-03-05
Author: David R. Bickel , Zahra Montazeri
Maintainer: David. R. Bickel
BundleDescription: EmpiricalBayes provides a simple solution to the extreme multiple testing problem by estimating local false
discovery rates. It contains two packages, localFDR and HighProbability. Given a vector of p- values, localFDR estimates local false discovery rates and HighProbability determines which p-values are low enough that their alternative hypotheses can be considered highly probable .
License: Mozilla Public License 1.1
Packaged: Wed May 7 16:51:03 2008; hornik
posted at: 13:18 | path: /cran/new | permanent link to this entry
Title: Tools for parsing and generating XML within R and S-Plus.
Description: Parsing facilities for arbitrary XML files, DTDs and HTML, offering both
event and tree based parsers which are customizable with R functions.
XML-1.93-2/XML/inst/Docs/MathML.pdf |only
XML-1.93-2/XML/inst/Docs/Outline.pdf |only
XML-1.93-2/XML/inst/Docs/Tour.pdf |only
XML-1.93-2/XML/inst/Docs/WritingXML.html |only
XML-1.93-2/XML/inst/Docs/description.pdf |only
XML-1.93-2/XML/inst/Docs/manual.pdf |only
XML-1.93-2/XML/inst/examples/obis.R |only
XML-1.95-1/XML/Changes | 101
XML-1.95-1/XML/DESCRIPTION | 4
XML-1.95-1/XML/INSTALL | 2
XML-1.95-1/XML/NAMESPACE | 39
XML-1.95-1/XML/R/XMLClasses.R | 232 +
XML-1.95-1/XML/R/accessors.R | 123
XML-1.95-1/XML/R/catalog.R | 74
XML-1.95-1/XML/R/createNode.R | 11
XML-1.95-1/XML/R/error.R |only
XML-1.95-1/XML/R/hashTree.R | 15
XML-1.95-1/XML/R/htmlParse.R | 11
XML-1.95-1/XML/R/parseDTD.R | 10
XML-1.95-1/XML/R/tree.R | 2
XML-1.95-1/XML/R/xmlErrorEnums.R |only
XML-1.95-1/XML/R/xmlEventParse.R | 24
XML-1.95-1/XML/R/xmlInternalSource.R | 104
XML-1.95-1/XML/R/xmlNodes.R | 337 +
XML-1.95-1/XML/R/xmlTree.R | 44
XML-1.95-1/XML/R/xmlTreeParse.R | 94
XML-1.95-1/XML/R/zzz.R | 2
XML-1.95-1/XML/configure | 4956 ++++++++++----------------
XML-1.95-1/XML/configure.in | 12
XML-1.95-1/XML/inst/exampleData/Rsource.xml | 7
XML-1.95-1/XML/inst/exampleData/entity.xml- |only
XML-1.95-1/XML/inst/exampleData/iTunes.plist |only
XML-1.95-1/XML/inst/exampleData/largeText.xml |only
XML-1.95-1/XML/inst/exampleData/same.xml |only
XML-1.95-1/XML/inst/exampleData/utf.xml |only
XML-1.95-1/XML/inst/examples/CIS.R |only
XML-1.95-1/XML/inst/examples/DiGIR.R |only
XML-1.95-1/XML/inst/examples/catalog.R |only
XML-1.95-1/XML/inst/examples/event.R | 6
XML-1.95-1/XML/inst/examples/itunesSax.R |only
XML-1.95-1/XML/inst/examples/mi1.R |only
XML-1.95-1/XML/man/XMLInternalDocument.Rd | 2
XML-1.95-1/XML/man/addChildren.Rd | 49
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XML-1.95-1/XML/man/catalogResolve.Rd | 24
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XML-1.95-1/XML/man/dtdIsAttribute.Rd | 4
XML-1.95-1/XML/man/free.Rd | 4
XML-1.95-1/XML/man/getNodeSet.Rd | 59
XML-1.95-1/XML/man/getXMLErrors.Rd |only
XML-1.95-1/XML/man/newXMLDoc.Rd | 63
XML-1.95-1/XML/man/parseDTD.Rd | 5
XML-1.95-1/XML/man/processXInclude.Rd |only
XML-1.95-1/XML/man/saveXML.Rd | 10
XML-1.95-1/XML/man/xmlAttributeType.Rd | 2
XML-1.95-1/XML/man/xmlAttrs.Rd | 5
XML-1.95-1/XML/man/xmlChildren.Rd | 8
XML-1.95-1/XML/man/xmlEventParse.Rd | 58
XML-1.95-1/XML/man/xmlFlatListTree.Rd | 2
XML-1.95-1/XML/man/xmlGetAttr.Rd | 15
XML-1.95-1/XML/man/xmlNamespace.Rd | 10
XML-1.95-1/XML/man/xmlNamespaceDefinitions.Rd | 16
XML-1.95-1/XML/man/xmlNode.Rd | 7
XML-1.95-1/XML/man/xmlSource.Rd | 53
XML-1.95-1/XML/man/xmlStopParser.Rd |only
XML-1.95-1/XML/man/xmlStructuredStop.Rd |only
XML-1.95-1/XML/man/xmlTreeParse.Rd | 165
XML-1.95-1/XML/src/DocParse.c | 373 +
XML-1.95-1/XML/src/DocParse.h | 2
XML-1.95-1/XML/src/EventParse.c | 98
XML-1.95-1/XML/src/EventParse.h | 7
XML-1.95-1/XML/src/HTMLParse.c | 3
XML-1.95-1/XML/src/RSDTD.c | 17
XML-1.95-1/XML/src/RSDTD.h | 2
XML-1.95-1/XML/src/RS_XML.h | 1
XML-1.95-1/XML/src/RUtils.c | 139
XML-1.95-1/XML/src/Utils.c | 168
XML-1.95-1/XML/src/Utils.h | 63
XML-1.95-1/XML/src/XMLEventParse.c | 161
XML-1.95-1/XML/src/XMLTree.c | 244 +
XML-1.95-1/XML/src/catalog.c | 97
XML-1.95-1/XML/src/xpath.c | 37
83 files changed, 4612 insertions(+), 3571 deletions(-)
posted at: 13:18 | path: /cran/updated | permanent link to this entry
Title: genome-wide SNP association analysis
Description: a package for genome-wide association analysis between
quantitative or binary traits and single-nucleiotide
polymorphisms (SNPs).
CHANGES.LOG | 8
DESCRIPTION | 10
NAMESPACE | 4
R/GASurv.R |only
R/convert.snp.affymetrix.R |only
R/merge.snp.data.R | 20
R/mlreg.R |only
TODO | 25
inst/doc/GenABEL-tutorial.pdf | 3453 +++++++++++++++++++-------------------
man/GASurv.Rd |only
man/GenABEL-package.Rd | 22
man/HWE.show.Rd | 3
man/Xfix.Rd | 2
man/add.plot.Rd | 1
man/as.character.gwaa.data.Rd | 10
man/as.character.snp.coding.Rd | 10
man/as.character.snp.data.Rd | 10
man/as.character.snp.strand.Rd | 10
man/as.data.frame.gwaa.data.Rd | 6
man/as.double.gwaa.data.Rd | 10
man/as.double.snp.data.Rd | 10
man/as.genotype.Rd | 10
man/as.genotype.gwaa.data.Rd | 10
man/as.genotype.snp.data.Rd | 10
man/as.hsgeno.Rd | 10
man/as.hsgeno.gwaa.data.Rd | 10
man/as.hsgeno.snp.data.Rd | 10
man/catable.Rd | 10
man/convert.snp.affymetrix.Rd |only
man/crnames.Rd | 12
man/descriptives.marker.Rd | 14
man/descriptives.scan.Rd | 14
man/descriptives.trait.Rd | 14
man/emp.ccfast.Rd | 5
man/emp.qtscore.Rd | 7
man/formetascore.Rd | 1
man/gwaa.data-class.Rd | 4
man/hom.Rd | 6
man/merge.snp.data.Rd | 2
man/mlreg.Rd |only
man/qtscore.Rd | 3
man/qvaluebh95.Rd | 8
man/scan.glm.2D.Rd | 4
man/scan.glm.Rd | 4
man/show.ncbi.Rd | 18
man/snp.names.Rd | 2
man/srdta.Rd | 18
man/sset.Rd | 12
src/Chip.cpp |only
src/Chip.h |only
src/chinv2.cpp |only
src/cholesky2.cpp |only
src/chsolve2.cpp |only
src/convert.snp.affymetrix.cpp |only
src/convert_snp_merlin.cpp | 2
src/convert_snp_merlin_wslash.cpp | 6
src/coxfit2.cpp |only
src/dmatrix.cpp |only
src/gtps_container.cpp | 37
src/gtps_container.h | 16
src/gwaa.c | 1
src/lm_gwaa.cpp |only
src/mematri1.h |only
src/mematriR.h |only
src/mematrix.h |only
src/merge.snp.data.cpp | 96 -
src/reg1.h |only
src/reg1data.h |only
src/survS.h |only
src/survproto.h |only
70 files changed, 2013 insertions(+), 1977 deletions(-)
posted at: 13:18 | path: /cran/updated | permanent link to this entry
Title: Interface to Lp_solve v. 5.5 to solve linear/integer programs
Description: Lp_solve is freely available (under LGPL 2) software for
solving linear, integer and mixed integer programs. In this implementation
we supply a "wrapper" function in C and some R functions that solve
general linear/integer problems, assignment problems, and transportation
problems. This version calls lp_solve version 5.5.
DESCRIPTION | 6 +++---
src/lpslink56.c | 1 -
2 files changed, 3 insertions(+), 4 deletions(-)
posted at: 05:18 | path: /cran/updated | permanent link to this entry
Title: Nearest-neighbor classification with categorical variables
Description: This program scales categorical variables in such a way as to
make NN classification as accurate as possible. It also handles continuous
variables and prior probabilities, and does intelligent variable selection
and estimation of error rates and the right number of NN's.
DESCRIPTION | 24 ++++++++++++------------
src/matrix.c | 2 +-
src/utilsR.c | 1 -
3 files changed, 13 insertions(+), 14 deletions(-)
posted at: 05:18 | path: /cran/updated | permanent link to this entry
Title: k-nn classification with variable selection inside leaves of a tree
Description: Construct or predict with k-nearest-neighbor classifiers,
using cross-validation to select k, choose variables (by forward
or backwards selection), and choose scaling (from among no scaling,
scaling each column by its SD, or scaling each column by its MAD).
The finished classifier will consist of a classification tree with
one such k-nn classifier in each leaf.
DESCRIPTION | 27 ++++++++++++++-------------
src/knnTree.c | 1 -
src/matrix.c | 2 +-
src/utils.c | 1 -
4 files changed, 15 insertions(+), 16 deletions(-)
posted at: 05:18 | path: /cran/updated | permanent link to this entry
Title: Seismic analysis tools in R
Description: The functions in this package are mostly designed to
reproduce the most commonly used functions in the LLNL software
Seismic Analysis Code (SAC, http://www.llnl.gov/sac/). This includes
reading standard binary SAC (and also SEGY) files, plotting
arrays of seismic recordings (the "SAC" plotting style), filtering
(highpass, lowpass, and bandpass IIR filters), integration, and
differentiation.
DESCRIPTION | 13 +++++++------
R/GET.seis.R | 2 +-
R/NumCalculus.R | 4 ++--
R/firstlib.r | 4 ++--
R/gcp.R | 4 ++--
R/getunits.R | 2 +-
R/iir.R | 16 ++++++++--------
R/mul.R | 6 +++---
R/plot.rsac.R | 22 +++++++++++++++-------
R/rotate.R | 2 +-
R/rsac.R | 2 +-
R/rtrend.R | 7 ++-----
R/section.R |only
R/spect.R | 2 +-
R/sync.R | 2 +-
R/taper.R | 4 ++--
data/sumatra.rda |binary
man/section.Rd |only
man/spect.Rd | 2 +-
man/sumatra.Rd | 4 ++--
src/LLNfilt.c | 3 ++-
src/get_seis.c | 2 +-
22 files changed, 55 insertions(+), 48 deletions(-)
posted at: 05:18 | path: /cran/updated | permanent link to this entry