Author: Andrea Spano' and Giorgio Spedicato
Title: Variables and Attributes Control Charts
Description: qAnalyst performs: control charts for variables and attributes according to Douglas C. Montgomery Introduction to Statistical Quality Control book, Capability analysis for normal and non - normal distributions and Distributions Identification
Diff between qAnalyst versions 0.5.1 dated 2008-02-19 and 0.5.2 dated 2008-05-07
DESCRIPTION | 8 ++++---- R/capabilityNormal.R | 10 +++++----- R/getParameterFun.R | 4 ++-- R/spc.R | 2 +- README | 4 ++++ man/capabilityNormal.Rd | 34 +++++++++++++++++++--------------- man/spc.Rd | 5 ++--- 7 files changed, 37 insertions(+), 30 deletions(-)
Author: Stefan Fritsch
Diff between neuralnet versions 1.0 dated 2008-04-15 and 1.1 dated 2008-05-07
Title: Training of neural networks
Description: Training of neural networks using the Resilient Backpropagation with (Riedmiller, 1994) or without Weightbacktracking (Riedmiller, 1993) or the modified globally convergent version by Anastasiadis et. al. (2005). The package allows flexible settings through custom-choice of error- and activation-function. Furthermore the calculation of generalized weights (Intrator O & Intrator N, 1993) is implemented.
DESCRIPTION | 8 ++++----
R/plot.nn.r | 2 +-
man/neuralnet-package.Rd | 4 ++--
3 files changed, 7 insertions(+), 7 deletions(-)
Author: Heather Turner and David Firth
Title: Generalized Nonlinear Models
Description: Functions to specify and fit generalized nonlinear models, including models with multiplicative interaction terms such as the UNIDIFF model from sociology and the AMMI model from crop science, and many others. Over-parameterized representations of models are used throughout; functions are provided for inference on estimable parameter combinations, as well as standard methods for diagnostics etc.
Diff between gnm versions 0.9-3 dated 2007-09-10 and 0.9-4 dated 2008-05-07
gnm-0.9-3/gnm/R/DrefVariables.R |only gnm-0.9-3/gnm/inst/CHANGES |only gnm-0.9-3/gnm/inst/doc/gnmOverview.Rnw |only gnm-0.9-3/gnm/man/Log.Rd |only gnm-0.9-3/gnm/man/Logit.Rd |only gnm-0.9-3/gnm/man/Raise.Rd |only gnm-0.9-4/gnm/.directory |only gnm-0.9-4/gnm/DESCRIPTION | 28 gnm-0.9-4/gnm/NAMESPACE | 13 gnm-0.9-4/gnm/R/Const.R | 10 gnm-0.9-4/gnm/R/Diag.R | 11 gnm-0.9-4/gnm/R/Exp.R | 3 gnm-0.9-4/gnm/R/Inv.R | 17 gnm-0.9-4/gnm/R/Log.R | 17 gnm-0.9-4/gnm/R/Logit.R | 17 gnm-0.9-4/gnm/R/Mult.R | 6 gnm-0.9-4/gnm/R/MultHomog.R | 21 gnm-0.9-4/gnm/R/Nonlin.R | 6 gnm-0.9-4/gnm/R/Raise.R | 17 gnm-0.9-4/gnm/R/Symm.R | 17 gnm-0.9-4/gnm/R/anova.gnm.R | 40 gnm-0.9-4/gnm/R/asGnm.glm.R | 1 gnm-0.9-4/gnm/R/asGnm.lm.R | 1 gnm-0.9-4/gnm/R/checkCall.R | 12 gnm-0.9-4/gnm/R/cholInv.R | 156 - gnm-0.9-4/gnm/R/cholInv1.R | 68 gnm-0.9-4/gnm/R/confint.gnm.R | 26 gnm-0.9-4/gnm/R/confint.profile.gnm.R | 50 gnm-0.9-4/gnm/R/fitted.gnm.R |only gnm-0.9-4/gnm/R/getData.R | 12 gnm-0.9-4/gnm/R/gnm.R | 75 gnm-0.9-4/gnm/R/gnmStart.R | 8 gnm-0.9-4/gnm/R/gnmTerms.R | 25 gnm-0.9-4/gnm/R/gnmTools.R | 23 gnm-0.9-4/gnm/R/hashSplit.R | 42 gnm-0.9-4/gnm/R/hatvalues.gnm.R | 4 gnm-0.9-4/gnm/R/instances.R | 22 gnm-0.9-4/gnm/R/nonlinTerms.R | 421 +-- gnm-0.9-4/gnm/R/ofInterest.R | 6 gnm-0.9-4/gnm/R/ofInterestReplacement.R | 22 gnm-0.9-4/gnm/R/parameters.R | 4 gnm-0.9-4/gnm/R/pickCoef.R | 48 gnm-0.9-4/gnm/R/plot.gnm.R | 96 gnm-0.9-4/gnm/R/plot.profile.gnm.R | 42 gnm-0.9-4/gnm/R/predict.gnm.R | 94 gnm-0.9-4/gnm/R/print.gnm.R | 7 gnm-0.9-4/gnm/R/print.profile.gnm.R | 29 gnm-0.9-4/gnm/R/print.summary.gnm.R | 18 gnm-0.9-4/gnm/R/profile.gnm.R | 276 +- gnm-0.9-4/gnm/R/qrSolve.R | 78 gnm-0.9-4/gnm/R/residuals.gnm.R | 12 gnm-0.9-4/gnm/R/rstandard.gnm.R | 2 gnm-0.9-4/gnm/R/sumExpression.R | 14 gnm-0.9-4/gnm/R/termPredictors.gnm.R | 11 gnm-0.9-4/gnm/R/weighted.MM.R | 22 gnm-0.9-4/gnm/R/weights.gnm.R |only gnm-0.9-4/gnm/R/zzz.R | 6 gnm-0.9-4/gnm/demo/gnm.R | 64 gnm-0.9-4/gnm/inst/.directory |only gnm-0.9-4/gnm/inst/CITATION | 32 gnm-0.9-4/gnm/inst/NEWS |only gnm-0.9-4/gnm/inst/doc/.directory |only gnm-0.9-4/gnm/inst/doc/gnmOverview.pdf | 3630 ++++++++++++++---------------- gnm-0.9-4/gnm/man/Const.Rd | 78 gnm-0.9-4/gnm/man/Exp.Rd | 94 gnm-0.9-4/gnm/man/Inv.Rd | 100 gnm-0.9-4/gnm/man/confint.gnm.Rd | 212 - gnm-0.9-4/gnm/man/gnm.Rd | 20 gnm-0.9-4/gnm/man/instances.Rd | 90 gnm-0.9-4/gnm/man/model.matrix.gnm.Rd | 64 gnm-0.9-4/gnm/man/nonlin.function.Rd | 353 +- gnm-0.9-4/gnm/man/ofInterest.Rd | 130 - gnm-0.9-4/gnm/man/parameters.Rd | 66 gnm-0.9-4/gnm/man/pickCoef.Rd | 122 - gnm-0.9-4/gnm/man/predict.gnm.Rd |only gnm-0.9-4/gnm/man/profile.gnm.Rd | 362 +- gnm-0.9-4/gnm/man/qrSolve.Rd | 122 - gnm-0.9-4/gnm/tests/RC.Rout.save | 94 gnm-0.9-4/gnm/tests/RChomog.Rout.save | 96 gnm-0.9-4/gnm/tests/biplot.Rout.save | 70 gnm-0.9-4/gnm/tests/diagonalRef.Rout.save | 100 gnm-0.9-4/gnm/tests/gammi.Rout.save | 76 gnm-0.9-4/gnm/tests/nls.R | 18 gnm-0.9-4/gnm/tests/stereotype.Rout.save | 96 gnm-0.9-4/gnm/tests/unidiff.Rout.save | 84 85 files changed, 4118 insertions(+), 4011 deletions(-)
Author: Søren Højsgaard
Diff between gRc versions 0.2.0 dated 2008-04-25 and 0.2.1 dated 2008-05-07
Title: Inference in Graphical Gaussian Models with Edge and Vertex Symmetries
Description: Estimation, model selection and other aspects of statistical inference in Graphical Gaussian models with edge and vertex symmetries (Graphical Gaussian models with colours)
gRc-0.2.0/gRc/src/rconipm.c |only
gRc-0.2.1/gRc/ChangeLog | 6 +
gRc-0.2.1/gRc/DESCRIPTION | 4
gRc-0.2.1/gRc/R/getScoreAndInformation4.R | 1
gRc-0.2.1/gRc/R/rcox-Scoring.R | 7 +
gRc-0.2.1/gRc/R/sets-SetOp-Lists.R | 44 -------
gRc-0.2.1/gRc/R/switchThetaK4.R | 84 +++++++++++++++
gRc-0.2.1/gRc/R/xxx2yyy.R | 20 +--
gRc-0.2.1/gRc/src/clevertrace.c | 118 ++++++++++-----------
gRc-0.2.1/gRc/src/rconipm2.c |only
gRc-0.2.1/gRc/src/shd_utils.c | 167 +++++++++++++++++++++++-------
gRc-0.2.1/gRc/src/shd_utils.h | 5
12 files changed, 304 insertions(+), 152 deletions(-)
Author: Søren Højsgaard
Diff between gRain versions 0.3.1 dated 2008-05-02 and 0.3.2 dated 2008-05-07
Title: Graphical Independence Networks
Description: A package for probability propagation in graphical independence networks, also known as probabilistic expert systems (which includes Bayesian networks as a special case).
ChangeLog | 6 ++++++
DESCRIPTION | 4 ++--
inst/doc/gRain-intro.pdf |binary
3 files changed, 8 insertions(+), 2 deletions(-)
More information about empiricalBayes at CRAN
Permanent link
Author: Duncan Temple Lang (duncan@wald.ucdavis.edu)
Title: Tools for parsing and generating XML within R and S-Plus.
Description: Parsing facilities for arbitrary XML files, DTDs and HTML, offering both
event and tree based parsers which are customizable with R functions.
Diff between XML versions 1.93-2 dated 2007-10-03 and 1.95-1 dated 2008-05-07
XML-1.93-2/XML/inst/Docs/MathML.pdf |only XML-1.93-2/XML/inst/Docs/Outline.pdf |only XML-1.93-2/XML/inst/Docs/Tour.pdf |only XML-1.93-2/XML/inst/Docs/WritingXML.html |only XML-1.93-2/XML/inst/Docs/description.pdf |only XML-1.93-2/XML/inst/Docs/manual.pdf |only XML-1.93-2/XML/inst/examples/obis.R |only XML-1.95-1/XML/Changes | 101 XML-1.95-1/XML/DESCRIPTION | 4 XML-1.95-1/XML/INSTALL | 2 XML-1.95-1/XML/NAMESPACE | 39 XML-1.95-1/XML/R/XMLClasses.R | 232 + XML-1.95-1/XML/R/accessors.R | 123 XML-1.95-1/XML/R/catalog.R | 74 XML-1.95-1/XML/R/createNode.R | 11 XML-1.95-1/XML/R/error.R |only XML-1.95-1/XML/R/hashTree.R | 15 XML-1.95-1/XML/R/htmlParse.R | 11 XML-1.95-1/XML/R/parseDTD.R | 10 XML-1.95-1/XML/R/tree.R | 2 XML-1.95-1/XML/R/xmlErrorEnums.R |only XML-1.95-1/XML/R/xmlEventParse.R | 24 XML-1.95-1/XML/R/xmlInternalSource.R | 104 XML-1.95-1/XML/R/xmlNodes.R | 337 + XML-1.95-1/XML/R/xmlTree.R | 44 XML-1.95-1/XML/R/xmlTreeParse.R | 94 XML-1.95-1/XML/R/zzz.R | 2 XML-1.95-1/XML/configure | 4956 ++++++++++---------------- XML-1.95-1/XML/configure.in | 12 XML-1.95-1/XML/inst/exampleData/Rsource.xml | 7 XML-1.95-1/XML/inst/exampleData/entity.xml- |only XML-1.95-1/XML/inst/exampleData/iTunes.plist |only XML-1.95-1/XML/inst/exampleData/largeText.xml |only XML-1.95-1/XML/inst/exampleData/same.xml |only XML-1.95-1/XML/inst/exampleData/utf.xml |only XML-1.95-1/XML/inst/examples/CIS.R |only XML-1.95-1/XML/inst/examples/DiGIR.R |only XML-1.95-1/XML/inst/examples/catalog.R |only XML-1.95-1/XML/inst/examples/event.R | 6 XML-1.95-1/XML/inst/examples/itunesSax.R |only XML-1.95-1/XML/inst/examples/mi1.R |only XML-1.95-1/XML/man/XMLInternalDocument.Rd | 2 XML-1.95-1/XML/man/addChildren.Rd | 49 XML-1.95-1/XML/man/addSibling.Rd |only XML-1.95-1/XML/man/catalogResolve.Rd | 24 XML-1.95-1/XML/man/catalogs.Rd |only XML-1.95-1/XML/man/docName.Rd |only XML-1.95-1/XML/man/dtdIsAttribute.Rd | 4 XML-1.95-1/XML/man/free.Rd | 4 XML-1.95-1/XML/man/getNodeSet.Rd | 59 XML-1.95-1/XML/man/getXMLErrors.Rd |only XML-1.95-1/XML/man/newXMLDoc.Rd | 63 XML-1.95-1/XML/man/parseDTD.Rd | 5 XML-1.95-1/XML/man/processXInclude.Rd |only XML-1.95-1/XML/man/saveXML.Rd | 10 XML-1.95-1/XML/man/xmlAttributeType.Rd | 2 XML-1.95-1/XML/man/xmlAttrs.Rd | 5 XML-1.95-1/XML/man/xmlChildren.Rd | 8 XML-1.95-1/XML/man/xmlEventParse.Rd | 58 XML-1.95-1/XML/man/xmlFlatListTree.Rd | 2 XML-1.95-1/XML/man/xmlGetAttr.Rd | 15 XML-1.95-1/XML/man/xmlNamespace.Rd | 10 XML-1.95-1/XML/man/xmlNamespaceDefinitions.Rd | 16 XML-1.95-1/XML/man/xmlNode.Rd | 7 XML-1.95-1/XML/man/xmlSource.Rd | 53 XML-1.95-1/XML/man/xmlStopParser.Rd |only XML-1.95-1/XML/man/xmlStructuredStop.Rd |only XML-1.95-1/XML/man/xmlTreeParse.Rd | 165 XML-1.95-1/XML/src/DocParse.c | 373 + XML-1.95-1/XML/src/DocParse.h | 2 XML-1.95-1/XML/src/EventParse.c | 98 XML-1.95-1/XML/src/EventParse.h | 7 XML-1.95-1/XML/src/HTMLParse.c | 3 XML-1.95-1/XML/src/RSDTD.c | 17 XML-1.95-1/XML/src/RSDTD.h | 2 XML-1.95-1/XML/src/RS_XML.h | 1 XML-1.95-1/XML/src/RUtils.c | 139 XML-1.95-1/XML/src/Utils.c | 168 XML-1.95-1/XML/src/Utils.h | 63 XML-1.95-1/XML/src/XMLEventParse.c | 161 XML-1.95-1/XML/src/XMLTree.c | 244 + XML-1.95-1/XML/src/catalog.c | 97 XML-1.95-1/XML/src/xpath.c | 37 83 files changed, 4612 insertions(+), 3571 deletions(-)
Author: Yurii Aulchenko, Maksim Struchalin, with contributions from
Stephan Ripke and Toby Johnson
Title: genome-wide SNP association analysis
Description: a package for genome-wide association analysis between
quantitative or binary traits and single-nucleiotide
polymorphisms (SNPs).
Diff between GenABEL versions 1.3-7 dated 2008-04-17 and 1.3-9 dated 2008-05-07
CHANGES.LOG | 8 DESCRIPTION | 10 NAMESPACE | 4 R/GASurv.R |only R/convert.snp.affymetrix.R |only R/merge.snp.data.R | 20 R/mlreg.R |only TODO | 25 inst/doc/GenABEL-tutorial.pdf | 3453 +++++++++++++++++++------------------- man/GASurv.Rd |only man/GenABEL-package.Rd | 22 man/HWE.show.Rd | 3 man/Xfix.Rd | 2 man/add.plot.Rd | 1 man/as.character.gwaa.data.Rd | 10 man/as.character.snp.coding.Rd | 10 man/as.character.snp.data.Rd | 10 man/as.character.snp.strand.Rd | 10 man/as.data.frame.gwaa.data.Rd | 6 man/as.double.gwaa.data.Rd | 10 man/as.double.snp.data.Rd | 10 man/as.genotype.Rd | 10 man/as.genotype.gwaa.data.Rd | 10 man/as.genotype.snp.data.Rd | 10 man/as.hsgeno.Rd | 10 man/as.hsgeno.gwaa.data.Rd | 10 man/as.hsgeno.snp.data.Rd | 10 man/catable.Rd | 10 man/convert.snp.affymetrix.Rd |only man/crnames.Rd | 12 man/descriptives.marker.Rd | 14 man/descriptives.scan.Rd | 14 man/descriptives.trait.Rd | 14 man/emp.ccfast.Rd | 5 man/emp.qtscore.Rd | 7 man/formetascore.Rd | 1 man/gwaa.data-class.Rd | 4 man/hom.Rd | 6 man/merge.snp.data.Rd | 2 man/mlreg.Rd |only man/qtscore.Rd | 3 man/qvaluebh95.Rd | 8 man/scan.glm.2D.Rd | 4 man/scan.glm.Rd | 4 man/show.ncbi.Rd | 18 man/snp.names.Rd | 2 man/srdta.Rd | 18 man/sset.Rd | 12 src/Chip.cpp |only src/Chip.h |only src/chinv2.cpp |only src/cholesky2.cpp |only src/chsolve2.cpp |only src/convert.snp.affymetrix.cpp |only src/convert_snp_merlin.cpp | 2 src/convert_snp_merlin_wslash.cpp | 6 src/coxfit2.cpp |only src/dmatrix.cpp |only src/gtps_container.cpp | 37 src/gtps_container.h | 16 src/gwaa.c | 1 src/lm_gwaa.cpp |only src/mematri1.h |only src/mematriR.h |only src/mematrix.h |only src/merge.snp.data.cpp | 96 - src/reg1.h |only src/reg1data.h |only src/survS.h |only src/survproto.h |only 70 files changed, 2013 insertions(+), 1977 deletions(-)
Author: Michel Berkelaar and others
Title: Interface to Lp_solve v. 5.5 to solve linear/integer programs
Description: Lp_solve is freely available (under LGPL 2) software for
solving linear, integer and mixed integer programs. In this implementation
we supply a "wrapper" function in C and some R functions that solve
general linear/integer problems, assignment problems, and transportation
problems. This version calls lp_solve version 5.5.
Diff between lpSolve versions 5.6.1 dated 2008-04-28 and 5.6.2 dated 2008-05-07
DESCRIPTION | 6 +++--- src/lpslink56.c | 1 - 2 files changed, 3 insertions(+), 4 deletions(-)
Author: Sam Buttrey
Title: Nearest-neighbor classification with categorical variables
Description: This program scales categorical variables in such a way as to
make NN classification as accurate as possible. It also handles continuous
variables and prior probabilities, and does intelligent variable selection
and estimation of error rates and the right number of NN's.
Diff between knncat versions 1.1.10 dated 2006-05-29 and 1.1.11 dated 2008-05-07
DESCRIPTION | 24 ++++++++++++------------ src/matrix.c | 2 +- src/utilsR.c | 1 - 3 files changed, 13 insertions(+), 14 deletions(-)
Author: Sam Buttrey
Diff between knnTree versions 1.2.3 dated 2004-11-16 and 1.2.4 dated 2008-05-07
Title: k-nn classification with variable selection inside leaves of a tree
Description: Construct or predict with k-nearest-neighbor classifiers,
using cross-validation to select k, choose variables (by forward
or backwards selection), and choose scaling (from among no scaling,
scaling each column by its SD, or scaling each column by its MAD).
The finished classifier will consist of a classification tree with
one such k-nn classifier in each leaf.
DESCRIPTION | 27 ++++++++++++++-------------
src/knnTree.c | 1 -
src/matrix.c | 2 +-
src/utils.c | 1 -
4 files changed, 15 insertions(+), 16 deletions(-)
Author: Eric M. Thompson
Diff between Rsac versions 0.1-5 dated 2007-10-14 and 0.1-6 dated 2008-05-07
Title: Seismic analysis tools in R
Description: The functions in this package are mostly designed to
reproduce the most commonly used functions in the LLNL software
Seismic Analysis Code (SAC, http://www.llnl.gov/sac/). This includes
reading standard binary SAC (and also SEGY) files, plotting
arrays of seismic recordings (the "SAC" plotting style), filtering
(highpass, lowpass, and bandpass IIR filters), integration, and
differentiation.
DESCRIPTION | 13 +++++++------
R/GET.seis.R | 2 +-
R/NumCalculus.R | 4 ++--
R/firstlib.r | 4 ++--
R/gcp.R | 4 ++--
R/getunits.R | 2 +-
R/iir.R | 16 ++++++++--------
R/mul.R | 6 +++---
R/plot.rsac.R | 22 +++++++++++++++-------
R/rotate.R | 2 +-
R/rsac.R | 2 +-
R/rtrend.R | 7 ++-----
R/section.R |only
R/spect.R | 2 +-
R/sync.R | 2 +-
R/taper.R | 4 ++--
data/sumatra.rda |binary
man/section.Rd |only
man/spect.Rd | 2 +-
man/sumatra.Rd | 4 ++--
src/LLNfilt.c | 3 ++-
src/get_seis.c | 2 +-
22 files changed, 55 insertions(+), 48 deletions(-)