Author: David Meyer, Achim Zeileis, Kurt Hornik
Title: Visualizing Categorical Data
Description: Visualization techniques, data sets, summary and inference
procedures aimed particularly at categorical data. Special
emphasis is given to highly extensible grid graphics. The
package was inspired by the book "Visualizing Categorical Data"
by Michael Friendly.
Diff between vcd versions 1.0-6 dated 2007-10-16 and 1.0-8 dated 2008-05-08
DESCRIPTION | 6 R/Ord_plot.R | 2 R/assoc.R | 2 R/cd_plot.R | 2 R/cotabplot.R | 58 R/distplot.R | 8 R/doubledeckerplot.R | 2 R/fourfold.R | 26 R/goodfit.R | 21 R/labeling.R | 50 R/legends.R | 26 R/mosaic.R | 2 R/rootogram.R | 2 R/sieve.R | 2 R/spacings.R | 2 R/spine.R | 2 R/strucplot.R | 34 R/structable.R | 14 R/ternaryplot.R | 14 demo/mondrian.R | 3 inst/CITATION | 3 inst/doc/Rplots.ps |39208 +++++++++++----------- inst/doc/Z.cls |only inst/doc/bkde.png |binary inst/doc/bkde2.png |binary inst/doc/class.png |binary inst/doc/hcl-colors-arthritis1.pdf | 96 inst/doc/hcl-colors-pal-d1.pdf | 6 inst/doc/hcl-colors-pal-q1.pdf | 6 inst/doc/hcl-colors-pal-s1.pdf | 6 inst/doc/hcl-colors-seats1.pdf | 6 inst/doc/hcl-colors-votes1.pdf | 6 inst/doc/hcl-colors.aux | 18 inst/doc/hcl-colors.log | 282 inst/doc/hcl-colors.pdf | 3684 +- inst/doc/jss.bst |only inst/doc/residual-shadings-Arthritis-classic1.pdf | 6 inst/doc/residual-shadings-Punishment-assoc1.pdf | 346 inst/doc/residual-shadings-Punishment-mosaic1.pdf | 202 inst/doc/residual-shadings-alzheimer-plot1.pdf | 106 inst/doc/residual-shadings-shadings.pdf | 6 inst/doc/residual-shadings.aux | 10 inst/doc/residual-shadings.blg | 2 inst/doc/residual-shadings.log | 277 inst/doc/residual-shadings.pdf | 3609 +- inst/doc/strucplot-Arthritis.eps | 72 inst/doc/strucplot-Arthritis.pdf | 94 inst/doc/strucplot-Conditioningfig.eps | 74 inst/doc/strucplot-Conditioningfig.pdf | 100 inst/doc/strucplot-Expectedfig.eps | 98 inst/doc/strucplot-Expectedfig.pdf | 120 inst/doc/strucplot-Observedfig.eps | 98 inst/doc/strucplot-Observedfig.pdf | 104 inst/doc/strucplot-PreSex.eps | 104 inst/doc/strucplot-PreSex.pdf | 126 inst/doc/strucplot-Residualsfig.eps | 226 inst/doc/strucplot-Residualsfig.pdf | 248 inst/doc/strucplot-Titanic.pdf | 6 inst/doc/strucplot-UCBAdmissions.eps | 216 inst/doc/strucplot-UCBAdmissions.pdf | 238 inst/doc/strucplot-Variablesfig.pdf | 6 inst/doc/strucplot-arthritisfig.eps | 74 inst/doc/strucplot-arthritisfig.pdf | 96 inst/doc/strucplot-artspinefig.eps | 26 inst/doc/strucplot-artspinefig.pdf | 32 inst/doc/strucplot-bundesligafig.pdf | 6 inst/doc/strucplot-changeplotfig.eps | 116 inst/doc/strucplot-changeplotfig.pdf | 122 inst/doc/strucplot-cotabplotfig.eps | 76 inst/doc/strucplot-cotabplotfig.pdf | 86 inst/doc/strucplot-haireyefig1.pdf | 6 inst/doc/strucplot-haireyefig2.pdf | 6 inst/doc/strucplot-haireyefig3.pdf | 6 inst/doc/strucplot-interpolatefig.pdf | 6 inst/doc/strucplot-label1fig.pdf | 6 inst/doc/strucplot-label2fig.eps | 348 inst/doc/strucplot-label2fig.pdf | 394 inst/doc/strucplot-label3fig.eps | 352 inst/doc/strucplot-label3fig.pdf | 386 inst/doc/strucplot-listfig.pdf | 6 inst/doc/strucplot-ocdoubledecker.pdf | 6 inst/doc/strucplot-ocmosaicnull.eps | 119 inst/doc/strucplot-ocmosaicnull.pdf | 141 inst/doc/strucplot-ocmosaicstage.eps | 95 inst/doc/strucplot-ocmosaicstage.pdf | 117 inst/doc/strucplot-ocpairs.pdf | 6 inst/doc/strucplot-pairsfig.pdf | 6 inst/doc/strucplot-recyclingfig.eps | 136 inst/doc/strucplot-recyclingfig.pdf | 166 inst/doc/strucplot-shading1fig.eps | 20 inst/doc/strucplot-shading1fig.pdf | 26 inst/doc/strucplot-sievefig.eps | 1330 inst/doc/strucplot-sievefig.pdf | 736 inst/doc/strucplot-spacingfig.eps | 104 inst/doc/strucplot-spacingfig.pdf | 126 inst/doc/strucplot-splitfig.eps | 98 inst/doc/strucplot-splitfig.pdf | 120 inst/doc/strucplot-ucbfig.eps | 20 inst/doc/strucplot-ucbfig.pdf | 26 inst/doc/strucplot-vcdlayout.pdf | 6 inst/doc/strucplot-viewportnamesfig.eps | 56 inst/doc/strucplot-viewportnamesfig.pdf | 70 inst/doc/strucplot.aux | 74 inst/doc/strucplot.log | 346 inst/doc/strucplot.pdf |binary inst/doc/vcd.bib |only man/MSPatients.Rd | 3 man/agreementplot.Rd | 3 man/assocstats.Rd | 2 man/labeling_border.Rd | 3 man/oddsratio.Rd | 2 man/strucplot.Rd | 2 112 files changed, 28106 insertions(+), 28102 deletions(-)
Author: Compiled by Adrian Trapletti
Diff between tseries versions 0.10-14 dated 2008-02-26 and 0.10-15 dated 2008-05-08
Title: Time series analysis and computational finance
Description: Package for time series analysis and computational finance
ChangeLog | 7 +++++++
DESCRIPTION | 6 +++---
R/finance.R | 2 +-
inst/CITATION | 3 ++-
4 files changed, 13 insertions(+), 5 deletions(-)
Author: Uwe Ligges
Diff between scatterplot3d versions 0.3-26 dated 2008-05-02 and 0.3-27 dated 2008-05-08
Title: 3D Scatter Plot
Description: Plots a three dimensional (3D) point cloud.
CHANGES | 1 +
DESCRIPTION | 7 ++++---
inst/CITATION | 2 +-
inst/doc/s3d.pdf | 6 +++---
4 files changed, 9 insertions(+), 7 deletions(-)
Author: Robin Nunkesser
Diff between RFreak versions 0.2-0 dated 2007-12-24 and 0.2-1 dated 2008-05-08
Title: R/FrEAK interface
Description: An R interface to a modified version of the Free Evolutionary Algorithm Kit FrEAK. FrEAK is a toolkit written in Java to design and analyze evolutionary algorithms. Both the R interface and an extended version of FrEAK are contained in the RFreak package. For more information on FrEAK see http://sourceforge.net/projects/freak427/.
DESCRIPTION | 13
inst/java/resource/freak/gui/help/footnode.html | 2
inst/java/resource/freak/gui/help/index.html | 482 +++++++++++-----------
inst/java/resource/freak/gui/help/node1.html | 4
inst/java/resource/freak/gui/help/node3.html | 268 ++++++------
inst/java/resource/freak/gui/help/node4.html | 284 ++++++------
inst/java/resource/freak/gui/help/node5.html | 186 ++++----
inst/java/resource/freak/gui/help/node6.html | 375 ++++++++---------
inst/java/resource/freak/gui/help/node7.html | 3
inst/java/resource/freak/gui/help/node8.html | 3
inst/java/resource/freak/gui/help/usersguide.html | 38 -
inst/java/run.cmd | 2
man/RFreak-package.Rd | 9
13 files changed, 834 insertions(+), 835 deletions(-)
Author: Paul Gilbert
Diff between tframe versions 2007.5-3 dated 2007-07-13 and 2008.5-1 dated 2008-05-08
Title: Time Frame coding kernel
Description: Functions for writing code that is independent of the way time is represented. See ?tframe.Intro for more details.
tframe-2007.5-3/tframe/INDEX |only
tframe-2007.5-3/tframe/R/its.R |only
tframe-2007.5-3/tframe/R/zoo.R |only
tframe-2007.5-3/tframe/help |only
tframe-2007.5-3/tframe/tests/zoo.R |only
tframe-2007.5-3/tframe/tframe-manual.pdf |only
tframe-2008.5-1/tframe/DESCRIPTION | 8
tframe-2008.5-1/tframe/NAMESPACE | 21 -
tframe-2008.5-1/tframe/NEWS | 9
tframe-2008.5-1/tframe/R/tframe.R | 6
tframe-2008.5-1/tframe/inst/doc/tframe.pdf | 398 ++++++++++++++---------------
tframe-2008.5-1/tframe/man/tframe.Rd | 8
tframe-2008.5-1/tframe/man/tfstart.Rd | 24 -
tframe-2008.5-1/tframe/man/tfwindow.Rd | 4
tframe-2008.5-1/tframe/tests/utils.R | 24 +
15 files changed, 240 insertions(+), 262 deletions(-)
Author: Michal Czajkowski, Ryan Gill, Greg Rempala
Title: Logistic Joinpoint Regression
Description: Fits and tests logistic joinpoint models.
Diff between ljr versions 1.1-0 dated 2008-02-24 and 1.2-0 dated 2008-05-08
ljr-1.1-0/ljr/R/ljr02.R |only ljr-1.1-0/ljr/R/ljr12.R |only ljr-1.1-0/ljr/R/ljr2.R |only ljr-1.1-0/ljr/R/ljr22.R |only ljr-1.1-0/ljr/R/ljrb2.R |only ljr-1.1-0/ljr/R/ljrf2.R |only ljr-1.1-0/ljr/man/ljr02.rd |only ljr-1.1-0/ljr/man/ljr12.rd |only ljr-1.1-0/ljr/man/ljr2.rd |only ljr-1.1-0/ljr/man/ljr22.rd |only ljr-1.1-0/ljr/man/ljrb2.rd |only ljr-1.1-0/ljr/man/ljrf2.rd |only ljr-1.1-0/ljr/src/backward2.c |only ljr-1.1-0/ljr/src/fillfreeint.c |only ljr-1.1-0/ljr/src/forward2.c |only ljr-1.1-0/ljr/src/ljr2.c |only ljr-1.1-0/ljr/src/ljr22.c |only ljr-1.1-0/ljr/src/ljr2rmint.c |only ljr-1.1-0/ljr/src/ljr2rmtm.c |only ljr-1.1-0/ljr/src/test02.c |only ljr-1.1-0/ljr/src/test12.c |only ljr-1.2-0/ljr/DESCRIPTION | 18 +++++++++--------- ljr-1.2-0/ljr/R/firstlib.R | 2 +- ljr-1.2-0/ljr/R/ljr0.R | 3 ++- ljr-1.2-0/ljr/R/ljr01.R | 3 ++- ljr-1.2-0/ljr/R/ljr1.R | 14 +++++++------- ljr-1.2-0/ljr/R/ljr11.R | 3 ++- ljr-1.2-0/ljr/R/ljrb.R | 3 ++- ljr-1.2-0/ljr/R/ljrf.R | 3 ++- ljr-1.2-0/ljr/R/ljrjk.R | 5 +++-- ljr-1.2-0/ljr/R/ljrk.R | 3 ++- ljr-1.2-0/ljr/R/ljrkk.R | 3 ++- ljr-1.2-0/ljr/data |only ljr-1.2-0/ljr/man/kcm.rd |only ljr-1.2-0/ljr/man/ljr0.rd | 28 ++++++---------------------- ljr-1.2-0/ljr/man/ljr01.rd | 28 ++++++---------------------- ljr-1.2-0/ljr/man/ljr1.rd | 29 ++++++----------------------- ljr-1.2-0/ljr/man/ljr11.rd | 30 +++++++----------------------- ljr-1.2-0/ljr/man/ljrb.rd | 29 +++++++---------------------- ljr-1.2-0/ljr/man/ljrf.rd | 29 +++++++---------------------- ljr-1.2-0/ljr/man/ljrjk.rd | 27 ++++++--------------------- ljr-1.2-0/ljr/man/ljrk.rd | 27 +++++---------------------- ljr-1.2-0/ljr/man/ljrkk.rd | 28 ++++++---------------------- ljr-1.2-0/ljr/src/fillfixed.c | 2 ++ ljr-1.2-0/ljr/src/fillfixedrm.c | 2 ++ ljr-1.2-0/ljr/src/fillfreermint.c |only ljr-1.2-0/ljr/src/rgi.c | 3 ++- 47 files changed, 96 insertions(+), 226 deletions(-)
Author: Mark Stevenson
Diff between epiR versions 0.9-5 dated 2008-04-29 and 0.9-6 dated 2008-05-08
Title: Functions for analysing epidemiological data
Description: A package for analysing epidemiological data. Contains functions
for directly and indirectly adjusting measures of disease frequency,
quantifying measures of association on the basis of single or multiple
strata of count data presented in a contingency table, and computing
confidence intervals around incidence risk and incidence rate estimates.
Miscellaneous functions for use in meta-analysis, diagnostic test
interpretation, and sample size calculations.
DESCRIPTION | 6
R/epi.ccc.r | 2
doc/epiR.pdf | 5775 ++++++++++++++++++++++++++++-----------------------------
man/epi.ccc.Rd | 32
4 files changed, 2903 insertions(+), 2912 deletions(-)
Author: Emmanuel Paradis, Ben Bolker, Julien Claude, Hoa Sien Cuong,
Richard Desper, Benoit Durand, Julien Dutheil, Olivier Gascuel,
Gangolf Jobb, Christoph Heibl, Vincent Lefort, Jim Lemon,
Yvonnick Noel, Johan Nylander, Rainer Opgen-Rhein, Korbinian Strimmer,
Damien de Vienne
Title: Analyses of Phylogenetics and Evolution
Description: ape provides functions for reading, writing, plotting,
and manipulating phylogenetic trees, analyses of comparative data
in a phylogenetic framework, analyses of diversification and
macroevolution, computing distances from allelic and nucleotide
data, reading nucleotide sequences, and several tools such as
Mantel's test, computation of minimum spanning tree, the population
parameter theta based on various approaches, nucleotide diversity,
generalized skyline plots, estimation of absolute evolutionary rates
and clock-like trees using mean path lengths, non-parametric rate
smoothing and penalized likelihood, classifying genes in trees using
the Klastorin-Misawa-Tajima approach. Phylogeny estimation can be done
with the NJ, BIONJ, ME, and ML methods.
Diff between ape versions 2.1-3 dated 2008-03-21 and 2.2 dated 2008-05-08
Changes | 48 ++++++++ DESCRIPTION | 13 +- R/DNA.R | 9 - R/PGLS.R | 84 +++++++++++++++ R/chronopl.R | 265 ++++++++++++++++++++++++++++++++++--------------- R/cophyloplot.R |only R/dist.topo.R | 168 ++++++++++++++++++------------- R/drop.tip.R | 22 ++-- R/multi2di.R | 4 R/plot.phylo.R | 9 - R/plotPhyloCoor.R |only R/read.dna.R | 8 - R/rtree.R | 41 +++---- R/subtreeplot.R |only R/subtrees.R |only R/summary.phylo.R | 3 R/zoom.R | 8 - Thanks | 22 ++-- inst/doc/MoranI.pdf |binary man/ape-internal.Rd | 2 man/boot.phylo.Rd | 9 + man/chronopl.Rd | 57 ++++++++-- man/compar.cheverud.Rd | 2 man/consensus.Rd | 13 ++ man/cophyloplot.Rd |only man/corBlomberg.Rd |only man/corClasses.Rd | 29 +++-- man/corPagel.Rd |only man/plot.phylo.Rd | 10 + man/subtreeplot.Rd |only man/subtrees.Rd |only 31 files changed, 579 insertions(+), 247 deletions(-)
Author: Paul Gilbert
Diff between TSpadi versions 2007.10-1 dated 2007-11-03 and 2008.5-1 dated 2008-05-08
Title: TSdbi Interface to PADI Time Series Server (for e.g. Fame)
Description: Provides methods for generics in the TSdbi package to
connect through a protocol for application database interface (PADI)
to a time series database (e.g. Fame).
DESCRIPTION | 9 +++++----
NEWS | 5 +++++
inst/doc/TSpadiFame.pdf |binary
3 files changed, 10 insertions(+), 4 deletions(-)
Author: Paul Gilbert
Diff between TSdbi versions 2007.10-1 dated 2007-10-27 and 2008.5-1 dated 2008-05-08
Title: Time Series Database Interface
Description: TSdbi provides an common interface to time series databases.
DESCRIPTION | 8 ++++----
NAMESPACE | 3 ++-
NEWS | 10 +++++++++-
R/TSdbi.R | 14 ++++++++------
R/TSquery.R |only
S4checks.R.tex |only
inst/doc/TSdbi.pdf |binary
man/TSquery.Rd |only
tests/S4checks.R |only
9 files changed, 23 insertions(+), 12 deletions(-)
Author: Paul Gilbert
Diff between TSSQLite versions 2007.10-1 dated 2007-11-03 and 2008.5-1 dated 2008-05-08
Title: Time Series Database Interface extentions for SQLite
Description: TSSQLite provides a SQLite interface for TSdbi.
DESCRIPTION | 10 +++++-----
Rplots.pdf |only
inst/doc/TSSQLite.pdf |binary
test |binary
4 files changed, 5 insertions(+), 5 deletions(-)
Author: Paul Gilbert
Diff between TSMySQL versions 2007.10-1 dated 2007-11-05 and 2008.5-1 dated 2008-05-08
Title: Time Series Database Interface extensions for MySQL
Description: TSMySQL provides a MySQL interface for TSdbi.
DESCRIPTION | 10 +++++-----
Rplots.pdf |only
S4checks.R.tex |only
inst/doc/TSMySQL.pdf |binary
4 files changed, 5 insertions(+), 5 deletions(-)
Author: Coen Bernaards and Robert Jennrich
Title: GPA Factor Rotation
Description: Gradient Projection Algorithm Rotation for Factor Analysis. See ?GPArotation.Intro for more details.
Diff between GPArotation versions 2007.06-1 dated 2007-06-10 and 2008.05-1 dated 2008-05-08
GPArotation-2007.06-1/GPArotation/GPArotation-manual.pdf |only GPArotation-2007.06-1/GPArotation/INDEX |only GPArotation-2007.06-1/GPArotation/help |only GPArotation-2008.05-1/GPArotation/DESCRIPTION | 8 ++++---- GPArotation-2008.05-1/GPArotation/LICENSE | 2 +- GPArotation-2008.05-1/GPArotation/NAMESPACE | 9 ++++++--- GPArotation-2008.05-1/GPArotation/NEWS | 9 +++++++++ GPArotation-2008.05-1/GPArotation/R/GPArotation.R | 4 ++-- GPArotation-2008.05-1/GPArotation/R/echelon.R |only GPArotation-2008.05-1/GPArotation/R/eiv.R | 4 ++-- GPArotation-2008.05-1/GPArotation/Rplots.pdf |only GPArotation-2008.05-1/GPArotation/inst/doc/GPArotation.pdf |binary GPArotation-2008.05-1/GPArotation/man/GPA.Rd | 2 +- GPArotation-2008.05-1/GPArotation/man/echelon.Rd |only GPArotation-2008.05-1/GPArotation/man/eiv.Rd | 5 +++-- GPArotation-2008.05-1/GPArotation/man/rotations.Rd | 9 ++++++--- 16 files changed, 34 insertions(+), 18 deletions(-)
Author: Donghoh Kim
Diff between EMD versions 1.0.0 dated 2008-03-29 and 1.1.0 dated 2008-05-08
Title: Empirical Mode Decomposition and Hilbert Spectral Analysis
Description: This package carries out empirical mode decompostion and Hilbert spectral
analysis.
DESCRIPTION | 8 ++++----
R/EMD1d.R | 6 +++++-
man/emd2d.Rd | 2 +-
man/extrema.Rd | 6 +++---
4 files changed, 13 insertions(+), 9 deletions(-)