Thu, 08 May 2008

Package vcd updated to version 1.0-8 with previous version 1.0-6 dated 2007-10-16

Author: David Meyer, Achim Zeileis, Kurt Hornik
Title: Visualizing Categorical Data
Description: Visualization techniques, data sets, summary and inference procedures aimed particularly at categorical data. Special emphasis is given to highly extensible grid graphics. The package was inspired by the book "Visualizing Categorical Data" by Michael Friendly.

Diff between vcd versions 1.0-6 dated 2007-10-16 and 1.0-8 dated 2008-05-08

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Package tseries updated to version 0.10-15 with previous version 0.10-14 dated 2008-02-26

Author: Compiled by Adrian Trapletti
Title: Time series analysis and computational finance
Description: Package for time series analysis and computational finance

Diff between tseries versions 0.10-14 dated 2008-02-26 and 0.10-15 dated 2008-05-08

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Package scatterplot3d updated to version 0.3-27 with previous version 0.3-26 dated 2008-05-02

Author: Uwe Ligges
Title: 3D Scatter Plot
Description: Plots a three dimensional (3D) point cloud.

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Package RFreak updated to version 0.2-1 with previous version 0.2-0 dated 2007-12-24

Author: Robin Nunkesser
Title: R/FrEAK interface
Description: An R interface to a modified version of the Free Evolutionary Algorithm Kit FrEAK. FrEAK is a toolkit written in Java to design and analyze evolutionary algorithms. Both the R interface and an extended version of FrEAK are contained in the RFreak package. For more information on FrEAK see http://sourceforge.net/projects/freak427/.

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New package BCE with initial version 1.1
Package: BCE
Version: 1.1
Title: Bayesian composition estimator: estimating sample (taxonomic) composition from biomarker data
Author: Karel Van den Meersche , Karline Soetaert
Maintainer: Karel Van den Meersche
Depends: R (>= 2.01), quadprog
Description: Function to estimates taxonomic compositions from biomarker data, using a Bayesian approach.
License: GPL
LazyData: yes
Packaged: Thu May 8 04:31:09 2008; theussl

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New package tframePlus with initial version 2008.5-1
Package: tframePlus
Title: Time Frame coding kernel extensions
Description: Extensions and additional tframe utilities.
Depends: R (>= 2.5.0), tframe
Imports: tframe
Suggests: zoo, its
Version: 2008.5-1
Date: 2008-05-02
LazyLoad: yes
License: GPL-2 | file LICENSE
Author: Paul Gilbert
Maintainer: Paul Gilbert
URL: http://www.bank-banque-canada.ca/pgilbert
Packaged: Fri May 2 10:24:00 2008; paul

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Package tframe updated to version 2008.5-1 with previous version 2007.5-3 dated 2007-07-13

Author: Paul Gilbert
Title: Time Frame coding kernel
Description: Functions for writing code that is independent of the way time is represented. See ?tframe.Intro for more details.

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Package ljr updated to version 1.2-0 with previous version 1.1-0 dated 2008-02-24

Author: Michal Czajkowski, Ryan Gill, Greg Rempala
Title: Logistic Joinpoint Regression
Description: Fits and tests logistic joinpoint models.

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Package epiR updated to version 0.9-6 with previous version 0.9-5 dated 2008-04-29

Author: Mark Stevenson with contributions from Telmo Nunes, Javier Sanchez, and Ron Thornton.
Title: Functions for analysing epidemiological data
Description: A package for analysing epidemiological data. Contains functions for directly and indirectly adjusting measures of disease frequency, quantifying measures of association on the basis of single or multiple strata of count data presented in a contingency table, and computing confidence intervals around incidence risk and incidence rate estimates. Miscellaneous functions for use in meta-analysis, diagnostic test interpretation, and sample size calculations.

Diff between epiR versions 0.9-5 dated 2008-04-29 and 0.9-6 dated 2008-05-08

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Package ape updated to version 2.2 with previous version 2.1-3 dated 2008-03-21

Author: Emmanuel Paradis, Ben Bolker, Julien Claude, Hoa Sien Cuong, Richard Desper, Benoit Durand, Julien Dutheil, Olivier Gascuel, Gangolf Jobb, Christoph Heibl, Vincent Lefort, Jim Lemon, Yvonnick Noel, Johan Nylander, Rainer Opgen-Rhein, Korbinian Strimmer, Damien de Vienne
Title: Analyses of Phylogenetics and Evolution
Description: ape provides functions for reading, writing, plotting, and manipulating phylogenetic trees, analyses of comparative data in a phylogenetic framework, analyses of diversification and macroevolution, computing distances from allelic and nucleotide data, reading nucleotide sequences, and several tools such as Mantel's test, computation of minimum spanning tree, the population parameter theta based on various approaches, nucleotide diversity, generalized skyline plots, estimation of absolute evolutionary rates and clock-like trees using mean path lengths, non-parametric rate smoothing and penalized likelihood, classifying genes in trees using the Klastorin-Misawa-Tajima approach. Phylogeny estimation can be done with the NJ, BIONJ, ME, and ML methods.

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Package TSpadi updated to version 2008.5-1 with previous version 2007.10-1 dated 2007-11-03

Author: Paul Gilbert
Title: TSdbi Interface to PADI Time Series Server (for e.g. Fame)
Description: Provides methods for generics in the TSdbi package to connect through a protocol for application database interface (PADI) to a time series database (e.g. Fame).

Diff between TSpadi versions 2007.10-1 dated 2007-11-03 and 2008.5-1 dated 2008-05-08

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Package TSdbi updated to version 2008.5-1 with previous version 2007.10-1 dated 2007-10-27

Author: Paul Gilbert
Title: Time Series Database Interface
Description: TSdbi provides an common interface to time series databases.

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Package TSSQLite updated to version 2008.5-1 with previous version 2007.10-1 dated 2007-11-03

Author: Paul Gilbert
Title: Time Series Database Interface extentions for SQLite
Description: TSSQLite provides a SQLite interface for TSdbi.

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Package TSMySQL updated to version 2008.5-1 with previous version 2007.10-1 dated 2007-11-05

Author: Paul Gilbert
Title: Time Series Database Interface extensions for MySQL
Description: TSMySQL provides a MySQL interface for TSdbi.

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New package RCurl with initial version 0.9-2
Package: RCurl
Version: 0.9-2
Title: HTTP request interface
Author: Duncan Temple Lang
SystemRequirements: curl (version 7.12.0 or higher) http://curl.haxx.se
Maintainer: Duncan Temple Lang
Description: The package allows one to compose HTTP requests to fetch URIs, post forms, etc. and process the results returned by the Web server. This provides a great deal of control over the HTTP connection and the form of the request while providing a higher-level interface than is available just using R socket connections. Additionally, the underlying implementation is robust and extensive, supporting SSL/HTTPS, cookies, redirects, authentication, etc.
License: BSD
LazyLoad: true
Depends: methods
URL: http://www.omegahat.org/RCurl
Limitations: One doesn't yet have full control over the contents of a POST form such as specifying files, content type. Error handling uses a single global variable at present.
Note: This will be used generally to communicate with HTTP servers and specifically in the SOAP package, HTML forms and for accessing data on Web sites that require more state information than simply URL access (e.g. cookies).
Check: To run R CMD check, one really needs network access. It is an HTTP client! This can be problematic as a Web site may be down when you run but the real tests are important.
Packaged: Thu May 8 02:28:19 2008; duncan

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Package GPArotation updated to version 2008.05-1 with previous version 2007.06-1 dated 2007-06-10

Author: Coen Bernaards and Robert Jennrich
Title: GPA Factor Rotation
Description: Gradient Projection Algorithm Rotation for Factor Analysis. See ?GPArotation.Intro for more details.

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Package EMD updated to version 1.1.0 with previous version 1.0.0 dated 2008-03-29

Author: Donghoh Kim , Hee-Seok Oh
Title: Empirical Mode Decomposition and Hilbert Spectral Analysis
Description: This package carries out empirical mode decompostion and Hilbert spectral analysis.

Diff between EMD versions 1.0.0 dated 2008-03-29 and 1.1.0 dated 2008-05-08

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