Author: Ki-Yeol Kim and Gwan-Su Yi, CSBio lab., Information and
Communications University
Title: Sequential KNN imputation method
Description: This function estimates missing values sequentially from
the gene that had least missing rate in microarray data
Diff between SeqKnn versions 1.0.0 dated 2006-02-08 and 1.0.1 dated 2008-05-09
SeqKnn-1.0.0/SeqKnn/R/SeqKNN.R |only SeqKnn-1.0.0/SeqKnn/R/nnmiss.R |only SeqKnn-1.0.0/SeqKnn/README |only SeqKnn-1.0.0/SeqKnn/man/SeqKNN.Rd |only SeqKnn-1.0.1/SeqKnn/CONTENTS |only SeqKnn-1.0.1/SeqKnn/DESCRIPTION | 20 ++++++++++---------- SeqKnn-1.0.1/SeqKnn/INDEX |only SeqKnn-1.0.1/SeqKnn/MD5 |only SeqKnn-1.0.1/SeqKnn/R/SeqKnn.R |only SeqKnn-1.0.1/SeqKnn/man/SeqKnn.Rd |only SeqKnn-1.0.1/SeqKnn/man/khan05.Rd | 17 +++-------------- SeqKnn-1.0.1/SeqKnn/man/nnmiss.Rd | 19 ------------------- 12 files changed, 13 insertions(+), 43 deletions(-)
Author: PBAT: Christoph Lange, pbatR: Thomas Hoffmann
Title: P2BAT
Description: This package provides data analysis via the pbat program, and an alternative internal implementation of the power calculations via simulation only. For analysis, this package provides a frontend to the PBAT software, automatically reading in the output from the pbat program and displaying the corresponding figure when appropriate (i.e. PBAT-logrank). It includes support for multiple processes and clusters. For analysis, users must download PBAT and accept it's license, available on the PBAT webpage. Both the data analysis and power calculations have command line and graphical interfaces using tcltk.
Diff between pbatR versions 2.0.2 dated 2007-09-27 and 2.1.1 dated 2008-05-09
DESCRIPTION | 6 +- NAMESPACE | 21 ++++--- R/cped.R |only R/createCommandfile.R | 30 +++++++--- R/pbat.R | 30 +++++++--- R/pbat.dir.R | 42 +++++++------- R/pbat.m.R | 32 ++++++---- R/pbatGUI.R | 61 ++++++++++++++++---- R/ped.R | 23 +++++-- R/phe.R | 18 ++++-- R/power.R | 58 +++++++++++++------ R/powerConversions.R | 4 - R/powerGUI.R | 66 +++++++++++++++------- R/version.R | 15 +++-- man/cped.Rd |only man/pbat.Rd | 149 ++++++++++++++++++++++++++------------------------ man/ped.Rd | 25 ++++---- man/phe.Rd | 14 ++-- man/power.Rd | 14 ++-- src/data.cpp | 29 +++++++++ src/kludge.cpp | 16 +++-- src/powerSim.cpp | 54 +++++++++++++----- src/wait.cpp | 20 +++--- 23 files changed, 469 insertions(+), 258 deletions(-)
Author: Max Kuhn, Steve Weaston
Title: Sweave processing of Open Document Format (ODF) files
Description: Sweave processing of Open Document Format (ODF) files
Diff between odfWeave versions 0.7.4 dated 2008-05-05 and 0.7.5 dated 2008-05-09
._odfWeave |only odfWeave/._DESCRIPTION |only odfWeave/._NAMESPACE |only odfWeave/._R |only odfWeave/._ToDo |only odfWeave/._inst |only odfWeave/._man |only odfWeave/DESCRIPTION | 6 +++--- odfWeave/R/._RweaveOdf.R |only odfWeave/R/._addFontDecs.R |only odfWeave/R/._addStyleDefs.R |only odfWeave/R/._adjustImageSize.R |only odfWeave/R/._figGen.R |only odfWeave/R/._getExt.R |only odfWeave/R/._getStyles.R |only odfWeave/R/._listString.R |only odfWeave/R/._matrixPaste.R |only odfWeave/R/._odfCat.R |only odfWeave/R/._odfDataType.R |only odfWeave/R/._odfEnv.R |only odfWeave/R/._odfFigureCaption.R |only odfWeave/R/._odfInsertPlot.R |only odfWeave/R/._odfItemize.R |only odfWeave/R/._odfPageBreak.R |only odfWeave/R/._odfSetPageStyle.R |only odfWeave/R/._odfStyleGen.R |only odfWeave/R/._odfTable.R |only odfWeave/R/._odfTable.character.R |only odfWeave/R/._odfTable.data.frame.R |only odfWeave/R/._odfTable.matrix.R |only odfWeave/R/._odfTable.numeric.R |only odfWeave/R/._odfTableCaption.R |only odfWeave/R/._odfTableGen.R |only odfWeave/R/._odfTmpDir.R |only odfWeave/R/._odfTranslate.R |only odfWeave/R/._odfWeave.R |only odfWeave/R/._odfWeaveControl.R |only odfWeave/R/._pkgVersions.R |only odfWeave/R/._postproc.R |only odfWeave/R/._preproc.R |only odfWeave/R/._procstyles.R |only odfWeave/R/._tableStyles.R |only odfWeave/R/._xmlUtils.R |only odfWeave/R/odfWeave.R | 22 +++++++++++----------- odfWeave/inst/._doc |only odfWeave/inst/._examples |only odfWeave/inst/doc/._RnewsExample.pdf |only odfWeave/inst/doc/._RnewsOut.pdf |only odfWeave/inst/doc/._odfWeave.Rnw |only odfWeave/inst/doc/._odfWeave.pdf |only odfWeave/inst/doc/._odfWeave.tex |only odfWeave/inst/doc/odfWeave.pdf |binary odfWeave/inst/doc/odfWeave.tex | 8 ++++---- odfWeave/inst/examples/._Frink.png |only odfWeave/inst/examples/._RunFormatting.R |only odfWeave/inst/examples/._examples.odt |only odfWeave/inst/examples/._formatting.odt |only odfWeave/inst/examples/._formattingOut.odt |only odfWeave/inst/examples/._simple.odt |only odfWeave/inst/examples/._testCases.odt |only odfWeave/man/._PreProc.Rd |only odfWeave/man/._RweaveOdf.Rd |only odfWeave/man/._adjustImageSize.Rd |only odfWeave/man/._announce.Rd |only odfWeave/man/._listString.Rd |only odfWeave/man/._matrixPaste.Rd |only odfWeave/man/._odfCat.Rd |only odfWeave/man/._odfFigureCaption.Rd |only odfWeave/man/._odfInsertPlot.Rd |only odfWeave/man/._odfItemize.Rd |only odfWeave/man/._odfPageBreak.Rd |only odfWeave/man/._odfSetPageStyle.Rd |only odfWeave/man/._odfTable.Rd |only odfWeave/man/._odfTableCaption.Rd |only odfWeave/man/._odfTmpDir.Rd |only odfWeave/man/._odfWeave.Rd |only odfWeave/man/._odfWeaveControl.Rd |only odfWeave/man/._pkgVersions.Rd |only odfWeave/man/._styles.Rd |only odfWeave/man/._tableStyles.Rd |only 80 files changed, 18 insertions(+), 18 deletions(-)
Author: Jonathan Rougier
Diff between Oarray versions 1.4 dated 2007-10-03 and 1.4-2 dated 2008-05-09
Title: Arrays with arbitrary offsets
Description: Generalise the starting point of the array index
DESCRIPTION | 4 ++--
R/Oarray.R | 52 ++++++++++++++++++++++++++++++++++++++++++----------
man/Oarray.Rd | 28 +++++++++++++++++++++++-----
man/internal.Rd | 10 ++++------
4 files changed, 71 insertions(+), 23 deletions(-)
Author: Robin K. S. Hankin
Title: multivariate polynomials
Description: Various utilities to manipulate multivariate polynomials
Diff between multipol versions 1.0-1 dated 2008-04-22 and 1.0-2 dated 2008-05-09
DESCRIPTION | 4 ++-- R/multipol.R | 11 +++++------ man/Ops.multipol.Rd | 18 ++++++++++++------ man/as.array.Rd | 3 ++- man/trim.Rd | 9 ++++----- 5 files changed, 25 insertions(+), 20 deletions(-)
Author: Torsten Hothorn, Friedrich Leisch, Achim Zeileis
Title: Tools and Classes for Statistical Models
Description: A collection of tools to deal with statistical models.
The functionality is experimental and the user interface is likely to
change in the future. The documentation is rather terse, but packages `coin'
and `party' have some working examples. However, if you find the
implemented ideas interesting we would be very interested in a discussion
of this proposal. Contributions are more than welcome!
Diff between modeltools versions 0.2-14 dated 2007-09-26 and 0.2-15 dated 2008-05-09
CHANGES | 12 ++++++++++++ DESCRIPTION | 6 +++--- NAMESPACE | 4 ++-- R/Generics.R | 4 ++-- R/Methods.R | 27 ++++++++++++++++++++++----- R/NAhandling.R | 6 +++--- inst/CHANGES | 12 ++++++++++++ man/Generics.Rd | 6 +++--- man/ModelEnv-class.Rd | 16 +++++++++++++--- tests/regtest.R | 6 ++++++ 10 files changed, 78 insertions(+), 21 deletions(-)
Author: Friedrich Leisch and Bettina Gruen
Title: Flexible Mixture Modeling
Description: FlexMix implements a general framework for finite
mixtures of regression models using the EM algorithm.
FlexMix provides the E-step and all data handling, while the M-step can be
supplied by the user to easily define new models. Existing drivers
implement mixtures of standard linear models, generalized linear
models and model-based clustering.
Diff between flexmix versions 2.0-2 dated 2008-03-26 and 2.1-0 dated 2008-05-09
DESCRIPTION | 8 NAMESPACE | 2 NEWS | 10 R/allGenerics.R | 6 R/flexmix.R | 6 R/infocrit.R | 4 R/plot-flexmix.R | 4 R/plot.R | 4 R/refit.R | 9 inst/NEWS | 10 inst/doc/flexmix-intro.Rnw | 4 inst/doc/flexmix-intro.pdf | 1619 +++---- inst/doc/regression-examples.Rnw | 14 inst/doc/regression-examples.pdf | 8007 +++++++++++++++++++-------------------- man/FLXmclust.Rd | 6 man/flexmix.Rd | 6 man/patent.Rd | 4 man/plot-methods.Rd | 2 man/posterior.Rd | 10 man/salmonellaTA98.Rd | 4 tests/binomial.R | 4 tests/binomial.Rout.save | 4 tests/restart.R | 4 23 files changed, 4886 insertions(+), 4865 deletions(-)
Author: Friedrich Leisch
Title: Flexible Cluster Algorithms
Description: The main function kcca implements a general framework for
k-centroids cluster analysis supporting arbitrary
distance/similarity measures and centroid computation. Further
cluster methods include hard competitive learning, neural gas and QT
clustering.
Diff between flexclust versions 0.9-1 dated 2007-05-03 and 0.99-0 dated 2008-05-09
DESCRIPTION | 10 ++--- NAMESPACE | 11 ++++-- NEWS | 43 +++++++++++++++++++++++++ R/barplot.R | 55 +++++++++++++++++++++++++------- R/cclust.R | 22 ++++++++----- R/info.R | 7 ++-- R/kcca.R | 53 +++++++++++++++++++++++-------- R/plot.R | 79 ++++++++++++++++++++++++++++++++++++++--------- R/predict.R | 6 +-- R/projAxes.R | 14 ++++---- R/qtclust.R | 56 ++++++++++++++++++++++++--------- R/tour.R |only R/utils.R | 82 ++++++++++++++++++++++++++++++++++++++----------- data/dentitio.txt | 4 +- inst/CITATION | 68 ++++++++++++++++++++++++++++++++++++++-- inst/NEWS | 43 +++++++++++++++++++++++++ man/barplot-methods.Rd | 16 ++++----- man/cclust.Rd | 10 +++-- man/conversion.Rd | 6 +-- man/flxColors.Rd |only man/info.Rd | 2 - man/kcca.Rd | 47 +++++++++++++++++++++++----- man/plot-methods.Rd | 35 +++++++++++--------- man/predict-methods.Rd | 16 ++++----- man/projAxes.Rd | 4 +- man/qtclust.Rd | 39 ++++++++++++++++++----- man/randomTour.Rd |only man/stepFlexclust.Rd | 6 ++- tests/randomTour.R |only 29 files changed, 570 insertions(+), 164 deletions(-)