CRANberries

Tue, 20 May 2008

Package rjags updated to version 1.0.2-3 with previous version 1.0.2-2 dated 2008-05-14

Author: Martyn Plummer
Title: Bayesian graphical models using MCMC
Description: Interface to the JAGS MCMC library

Diff between rjags versions 1.0.2-2 dated 2008-05-14 and 1.0.2-3 dated 2008-05-20

 DESCRIPTION        |    8 ++++----
 R/windows/zzz.R.in |   51 ++++++++++++++++++++++++---------------------------
 configure          |   12 +++++++++++-
 configure.ac       |   10 +++++++++-
 configure.ac.keep  |only
 configure.ac.test  |only
 configure.win      |    3 ---
 7 files changed, 48 insertions(+), 36 deletions(-)

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posted at: 13:18 | path: /cran/updated | permanent link to this entry

Package adimpro updated to version 0.6.2 with previous version 0.6.1 dated 2008-05-19

Author: Karsten Tabelow , Joerg Polzehl
Title: Adaptive Smoothing of Digital Images
Description: This package implements tools for manipulationg digital images and the Propagation Separation approach by Polzehl and Spokoiny (2006) for smoothing digital images.

Diff between adimpro versions 0.6.1 dated 2008-05-19 and 0.6.2 dated 2008-05-20

 DESCRIPTION        |    4 ++--
 man/adimpro.Rd     |   12 +-----------
 man/develop.raw.Rd |    9 +--------
 3 files changed, 4 insertions(+), 21 deletions(-)

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posted at: 13:18 | path: /cran/updated | permanent link to this entry

Package MMG updated to version 1.2.2 with previous version 1.2.1 dated 2008-05-16

Author: Josselin Noirel and Guido Sanguinetti
Title: Mixture Model on Graphs
Description: This package implements the Mixture Model on Graphs developed in Sanguinetti et al., Bioinformatics 2008. The graph structure is used to infer quantities that were not measured, based on the neighbours' measurements. This approach was developed to address problems typical of Quantitative Proteomics but could be applicable to many other domains.

Diff between MMG versions 1.2.1 dated 2008-05-16 and 1.2.2 dated 2008-05-20

 CHANGES             |    6 
 DESCRIPTION         |    5 
 R/MMG.compute.R     |    2 
 R/MMG.cut.graph.R   |    2 
 R/MMG.make.dot.R    |    2 
 inst/.DS_Store      |only
 inst/doc/MMG.Rnw    |   22 +-
 inst/doc/MMG.pdf    |  455 +++++++++++++++++++++++++---------------------------
 inst/doc/nostoc.dot |   16 -
 inst/doc/test1.dot  |    4 
 inst/doc/test2.dot  |    8 
 man/MMG-package.Rd  |    4 
 src/MMG_compute.c   |    2 
 src/MMG_cut_graph.c |    2 
 src/MMG_make_dot.c  |    2 
 15 files changed, 266 insertions(+), 266 deletions(-)

More information about MMG at CRAN

posted at: 13:18 | path: /cran/updated | permanent link to this entry

Package stab updated to version 0.0.2 with previous version 0.0.1 dated 2008-05-02

Author: Hsin-ya Lee , Yung-jin Lee
Title: data analysis of drug stability
Description: A menu-driven package for data analysis of drug stability based on ICH guideline(such as estimation of shelf-life from a 3-batch profile.)

Diff between stab versions 0.0.1 dated 2008-05-02 and 0.0.2 dated 2008-05-20

 DESCRIPTION         |    6 ++--
 R/MultipleAnalyze.r |   63 +++++++++++++++++++++++-----------------------------
 R/zzz.R             |    2 -
 3 files changed, 32 insertions(+), 39 deletions(-)

More information about stab at CRAN

posted at: 05:18 | path: /cran/updated | permanent link to this entry

New package sdtalt with initial version 0.1-0
Package: sdtalt
Title: Signal detection theory measures and alternatives
Version: 0.1-0
Date: 2008-05-18
Author: Daniel B. Wright
Maintainer: Daniel B. Wright
Description: Two functions, sdt and mlmsdt, for calculating statistics from signal detection theory. sdt calculates several measures where each individual's data form a 2x2 table. Statistics for each individual and for the sample are calculated. mlmsdt using Bates' (2008) lme4 to run multilevel generalized linear models for this situation. Deatails in Wright, D.B., Horry, R., & Skagerberg, E.M. (in press). Functions for traditional and multilevel approaches to signal detection theory. Behavior Research Methods.
Depends: lme4, boot
License: GPL
Packaged: Tue May 20 07:52:23 2008; danw

More information about sdtalt at CRAN

posted at: 05:18 | path: /cran/new | permanent link to this entry

New package rPorta with initial version 0.1-5
Package: rPorta
Version: 0.1-5
Date: 2008-05-19
Title: R/PORTA interface
Author: Robin Nunkesser , Silke Straatmann, Simone Wenzel
Maintainer: Robin Nunkesser
Depends: R (>= 2.6.0)
Imports: methods
Description: An R interface to a modified version of PORTA.
License: GPL (>= 2)
Packaged: Mon May 19 17:25:00 2008; nunkesser

More information about rPorta at CRAN

posted at: 05:18 | path: /cran/new | permanent link to this entry

Package optmatch updated to version 0.4-0 with previous version 0.3-9 dated 2008-05-14

Author: Ben B. Hansen , with embedded Fortran code due to Dimitri P. Bertsekas and Paul Tseng.
Title: Functions for optimal matching
Description: Functions to perform optimal matching, particularly full matching

Diff between optmatch versions 0.3-9 dated 2008-05-14 and 0.4-0 dated 2008-05-20

 ChangeLog                                  |    5 +-
 DESCRIPTION                                |    6 +-
 NAMESPACE                                  |    1 
 R/moremethods.optmatch.R                   |only
 R/stratumStructure.R                       |    6 ++
 inst/doc/optmatch.pdf                      |binary
 man/stratumStructure.Rd                    |   63 +++++++++++++++++++++++++++--
 tests/moremethods.optmatch-tests.R         |only
 tests/moremethods.optmatch-tests.Rout.save |only
 tests/stratumStructure-tests.R             |only
 tests/stratumStructure-tests.Rout.save     |only
 11 files changed, 74 insertions(+), 7 deletions(-)

More information about optmatch at CRAN

posted at: 05:18 | path: /cran/updated | permanent link to this entry

Package mra updated to version 1.2 with previous version 1.1 dated 2007-11-20

Author: Trent McDonald
Title: Analysis of Mark-Recapture data
Description: Analysis of mark-recapture (capture-recapture) data using individual, time, and individual-time varying covariates. Version 1.X contains functions to estimate live-capture Cormack-Jolly-Seber open population models.

Diff between mra versions 1.1 dated 2007-11-20 and 1.2 dated 2008-05-20

 DESCRIPTION         |    6 +++---
 R/residuals.cjs.R   |    2 +-
 man/F.cjs.covars.Rd |   13 +++++++------
 man/F.cjs.estim.Rd  |   13 +++++++------
 4 files changed, 18 insertions(+), 16 deletions(-)

More information about mra at CRAN

posted at: 05:18 | path: /cran/updated | permanent link to this entry

Package chron updated to version 2.3-23 with previous version 2.3-22 dated 2008-03-04

Author: S original by David James , R port by Kurt Hornik .
Title: Chronological objects which can handle dates and times
Description: Chronological objects which can handle dates and times

Diff between chron versions 2.3-22 dated 2008-03-04 and 2.3-23 dated 2008-05-20

 ChangeLog     |   11 +++++++++++
 DESCRIPTION   |    6 +++---
 R/dates.R     |    6 +++++-
 inst/CITATION |    3 ++-
 4 files changed, 21 insertions(+), 5 deletions(-)

More information about chron at CRAN

posted at: 05:18 | path: /cran/updated | permanent link to this entry

New package compoisson with initial version 0.3
Package: compoisson
Type: Package
Title: Conway-Maxwell-Poisson Distribution
Version: 0.3
Date: 2008-05-07
Author: Jeffrey Dunn
Maintainer: Jeffrey Dunn
Description: Provides routines for density and moments of the Conway-Maxwell-Poisson distribution as well as functions for fitting the COM-Poisson model for over/under-dispersed count data.
License: BSD
Depends: stats, MASS
Packaged: Mon May 19 18:28:46 2008; jsd115

More information about compoisson at CRAN

posted at: 05:18 | path: /cran/new | permanent link to this entry

Package bayesmix updated to version 0.6-0 with previous version 0.5-4 dated 2007-04-11

Author: Bettina Gruen
Title: Bayesian Mixture Models with JAGS
Description: Bayesian mixture models of univariate Gaussian distributions using JAGS

Diff between bayesmix versions 0.5-4 dated 2007-04-11 and 0.6-0 dated 2008-05-20

 DESCRIPTION           |   16 ++++++++--------
 NEWS                  |    8 ++++++--
 R/AAA.R               |    2 +-
 R/BMMmodel.R          |   11 ++++++-----
 R/BMMpriors.R         |   16 ++++++++--------
 R/Inits.R             |    8 ++++----
 R/JAGScall.R          |   35 ++++++++++-------------------------
 R/JAGScontrol.R       |   18 +++++++++++-------
 R/JAGSrun.R           |   12 ++++++------
 R/Sort.R              |    4 ++--
 R/plots.R             |   12 ++++++------
 R/randomPermutation.R |    2 +-
 man/BMMpriors.Rd      |    3 ++-
 man/JAGScontrol.Rd    |    5 ++++-
 man/darwin.Rd         |    2 +-
 man/priors.Rd         |    5 +++--
 16 files changed, 79 insertions(+), 80 deletions(-)

More information about bayesmix at CRAN

posted at: 05:18 | path: /cran/updated | permanent link to this entry