Sun, 01 Jun 2008

Package ramps updated to version 0.6-4 with previous version 0.6-3 dated 2008-05-19

Author: Brian J. Smith , Jun Yan , and Mary Kathryn Cowles
Title: Bayesian Geostatistical Modeling with RAMPS
Description: Bayesian geostatistical modeling of Gaussian processes using a reparameterized and marginalized posterior sampling (RAMPS) algorithm designed to lower autocorrelation in MCMC samples. Package performance is tuned for large spatial datasets.

Diff between ramps versions 0.6-3 dated 2008-05-19 and 0.6-4 dated 2008-06-01

 DESCRIPTION          |    6 +++---
 R/graphics.R         |    2 +-
 R/mpdensity.R        |    7 ++++---
 R/predict.R          |   30 ++++++++++++++++--------------
 R/utils.R            |    4 ++--
 man/georamps.Rd      |    4 ++--
 man/plot.Rd          |    4 ++--
 man/predict.ramps.Rd |    4 ++--
 8 files changed, 32 insertions(+), 29 deletions(-)

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Package jit updated to version 0.0-7 with previous version 0.0-6 dated 2008-04-24

Author: Stephen Milborrow
Title: Just-in-time compiler for the R language
Description: Enable just-in-time (JIT) compilation. The functions in this package are useful only under Ra and have no effect under R. See \url{http://www.milbo.users.sonic.net/ra/index.html}. This version of the jit package is for Ra 1.1.0 and higher.

Diff between jit versions 0.0-6 dated 2008-04-24 and 0.0-7 dated 2008-06-01

 DESCRIPTION |    8 ++++----
 NEWS        |    3 +++
 man/jit.Rd  |   24 ++++++++++++++++++------
 3 files changed, 25 insertions(+), 10 deletions(-)

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New package msProstate with initial version 1.0.1
Package: msProstate
Type: Package
Title: Protein Mass Spectra Dataset from a Breast Cancer Study
Version: 1.0.1
Date: 2008-06-01
Author: Lixin Gong, William Constantine, and Alex Chen
Maintainer: Lixin Gong
Depends: R (>= 2.5.0), RSQLite
DependsSplus:
Suggests: msProcess
Description: This package provides a dataset of protein mass spectra generated from patients with prostate cancer, benign prostatic hypertrophy, and normal controls.
License: GNU General Public License Version 2
Copyright: 2007-2008 Insightful Corporation. All rights reserved.
Packaged: Fri May 30 10:14:15 2008; lgong

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Package glmmML updated to version 0.81-2 with previous version 0.81-1 dated 2008-05-26

Author: Göran Broström
Title: Generalized linear models with clustering
Description: A Maximum Likelihood and bootstrap approach to mixed models

Diff between glmmML versions 0.81-1 dated 2008-05-26 and 0.81-2 dated 2008-06-01

 DESCRIPTION       |    6 +++---
 man/glmmML.Rd     |   14 +++++++-------
 man/glmmML.fit.Rd |    7 +++++--
 3 files changed, 15 insertions(+), 12 deletions(-)

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Package dlm updated to version 0.9-1 with previous version 0.8-1 dated 2007-11-20

Author: Giovanni Petris
Title: Bayesian and Likelihood Analysis of Dynamic Linear Models
Description: Maximum likelihood, Kalman filtering and smoothing, and Bayesian analysis of Normal linear State Space models, also known as Dynamic Linear Models

Diff between dlm versions 0.8-1 dated 2007-11-20 and 0.9-1 dated 2008-06-01

 dlm-0.8-1/dlm/README            |only
 dlm-0.9-1/dlm/DESCRIPTION       |    8 -
 dlm-0.9-1/dlm/NAMESPACE         |   28 ++++-
 dlm-0.9-1/dlm/R/DLM.R           |  210 ++++++++++++++++++++++++++++++++--------
 dlm-0.9-1/dlm/inst/doc/dlm.Rnw  |    2 
 dlm-0.9-1/dlm/inst/doc/dlm.pdf  |binary
 dlm-0.9-1/dlm/man/FF.Rd         |   81 ++++++++++++---
 dlm-0.9-1/dlm/man/NelPlo.Rd     |    1 
 dlm-0.9-1/dlm/man/USecon.Rd     |    1 
 dlm-0.9-1/dlm/man/bdiag.Rd      |    2 
 dlm-0.9-1/dlm/man/dlmBSample.Rd |    1 
 dlm-0.9-1/dlm/man/dlmMLE.Rd     |    1 
 dlm-0.9-1/dlm/man/dlmRandom.Rd  |    2 
 dlm-0.9-1/dlm/man/rwishart.Rd   |    2 
 14 files changed, 264 insertions(+), 75 deletions(-)

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New package deSolve with initial version 1.1
Package: deSolve
Version: 1.1
Title: General solvers for ordinary differential equations (ODE) and for differential algebraic equations (DAE)
Author: Karline Soetaert , Thomas Petzoldt , R. Woodrow Setzer
Maintainer: R. Woodrow Setzer
Depends: R (>= 2.01)
Description: Functions that solve a system of first-order ordinary differential equations (ODE) and of differential algebraic equations (DAE). The functions provide an interface to the fortran functions \code{lsoda}, \code{lsodar}, \code{lsode}, \code{lsodes}, \code{dvode} and \code{daspk}. The package also contains routines designed for solving uni-and multicomponent 1-D and 2-D reactive transport models.
License: GPL
LazyData: yes
Packaged: Fri May 30 04:45:45 2008; theussl

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New package bise with initial version 1.0
Package: bise
Title: Auxiliary functions for phenological data analysis
Version: 1.0
Date: 16.08.2007
Author: Daniel Doktor
Description: Provides some easy-to-use functions for spatial analyses of (plant-) phenological data sets and satellite observations of vegetation.
Maintainer: Daniel Doktor
Depends: R (>= 1.9)
License: GPL (>=2)
Packaged: Fri May 30 16:07:54 2008; doktor

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Package brlr updated to version 0.9-1 with previous version 0.8-9 dated 2007-10-09

Author: David Firth
Title: Bias-reduced logistic regression
Description: Logistic regression models by maximum penalized likelihood. Now superseded by the brglm package.

Diff between brlr versions 0.8-9 dated 2007-10-09 and 0.9-1 dated 2008-06-01

 DESCRIPTION |    9 +++++----
 R/brlr.R    |    2 ++
 man/brlr.Rd |   17 +++++++++++++++--
 3 files changed, 22 insertions(+), 6 deletions(-)

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Package bcp updated to version 2.0 with previous version 1.8.5 dated 2008-05-16

Author: Chandra Erdman and John W. emerson
Title: A Package for Performing a Bayesian Analysis of Change Point Problems
Description: An implementation of the Barry and Hartigan (1993) product partition model for the standard change point problem using Markov Chain Monte Carlo.

Diff between bcp versions 1.8.5 dated 2008-05-16 and 2.0 dated 2008-06-01

 DESCRIPTION          |    6 
 R/bcp.R              |   66 ++--
 R/output.R           |   15 -
 man/RealInt.Rd       |    2 
 man/bcp.Rd           |    7 
 man/fitted.bcp.Rd    |    5 
 man/plot.bcp.Rd      |    5 
 man/print.bcp.Rd     |    5 
 man/residuals.bcp.Rd |    5 
 man/summary.bcp.Rd   |    5 
 src/Cbcp.cpp         |  749 ++++++++++++++++++++++++++++++++-------------------
 11 files changed, 532 insertions(+), 338 deletions(-)

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New package Pomic with initial version 0.9.0
Package: Pomic
Type: Package
Title: Pattern Oriented Modelling Information Criterion
Version: 0.9.0
Date: 2008-30-05
Author: Cyril Piou
Maintainer: Cyril Piou
Description: This package propose calculations of a non-parsimonious based information criterion to check the quality of simulations results of ABM/IBM or other non-linear rule-based models. The POMIC is based on the KL divergence and likelihood theory. This method is still under development and further work are needed for the incorporation of model complexity measurement in the information criterion.
Depends: stats
License: GPL-2
Packaged: Fri May 30 15:46:52 2008; cyrilpiou

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Package PolynomF updated to version 0.92 with previous version 0.9 dated 2008-05-13

Author: Bill Venables
Title: Polynomials in R
Description: Implements univariate polynomial operations in R

Diff between PolynomF versions 0.9 dated 2008-05-13 and 0.92 dated 2008-06-01

 DESCRIPTION         |    6 ++--
 NAMESPACE           |    5 ++++
 R/PolynomF.R        |   65 ++++++++++++++++++++++++++++++++++++----------------
 man/Math.polynom.Rd |    6 +++-
 man/plot.polynom.Rd |    7 ++++-
 src                 |only
 6 files changed, 64 insertions(+), 25 deletions(-)

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