Tue, 03 Jun 2008

Package stepwise updated to version 0.2-2 with previous version 0.2-1 dated 2007-10-28

Author: Jinko Graham , Brad McNeney , Francoise Seillier-Moiseiwitsch , R interface by Sigal Blay
Title: Stepwise detection of recombination breakpoints
Description: A stepwise approach to identifying recombination breakpoints in a sequence alignment.

Diff between stepwise versions 0.2-1 dated 2007-10-28 and 0.2-2 dated 2008-06-03

 DESCRIPTION    |    4 ++--
 src/stepwise.c |    2 +-
 2 files changed, 3 insertions(+), 3 deletions(-)

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Package GeneCycle updated to version 1.0.4 with previous version 1.0.3 dated 2008-02-06

Author: Miika Ahdesmaki, Konstantinos Fokianos, and Korbinian Strimmer.
Title: Identification of Periodically Expressed Genes
Description: The GeneCycle package implements the approaches of Wichert et al. (2004) and Ahdesmaki et al. (2005) for detecting periodically expressed genes from gene expression time series data.

Diff between GeneCycle versions 1.0.3 dated 2008-02-06 and 1.0.4 dated 2008-06-03

 CHANGES                   |   17 ++++++++++
 DESCRIPTION               |    8 ++---
 R/fisher.g.test.R         |   20 +++++++++---
 R/robust.g.test.R         |   13 +++++---
 inst/doc/caulobacter.R    |    7 +---
 inst/doc/wichert-table2.R |   73 +++++++++++++++++++++++++---------------------
 6 files changed, 87 insertions(+), 51 deletions(-)

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Package rgl updated to version 0.79 with previous version 0.78.671 dated 2008-05-13

Author: Daniel Adler , Duncan Murdoch
Title: 3D visualization device system (OpenGL)
Description: 3D visualization device (OpenGL)

Diff between rgl versions 0.78.671 dated 2008-05-13 and 0.79 dated 2008-06-03

 DESCRIPTION           |    6 +++---
 R/animate.R           |    7 ++++---
 R/device.R            |    6 +++---
 R/matrices.R          |    2 ++
 README                |    5 +----
 demo/00Index          |    1 +
 demo/mouseCallbacks.R |only
 inst/NEWS             |    8 +++++++-
 man/par3dinterp.Rd    |   12 +++++++-----
 man/rgl-package.Rd    |    3 ++-
 src/DeviceManager.hpp |    4 ++--
 src/api.cpp           |    5 +++--
 src/device.cpp        |    8 ++++++--
 src/devicemanager.cpp |   12 +++++++-----
 14 files changed, 48 insertions(+), 31 deletions(-)

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Package fCalendar updated to version 270.75 with previous version 270.74 dated 2008-05-13

Author: Diethelm Wuertz and many others, see the SOURCE file
Title: Rmetrics - Chronological and Calendarical Objects
Description: Environment for teaching "Financial Engineering and Computational Finance"

Diff between fCalendar versions 270.74 dated 2008-05-13 and 270.75 dated 2008-06-03

 fCalendar-270.74/fCalendar/inst/unitTests/runi.Coercion.R            |only
 fCalendar-270.75/fCalendar/DESCRIPTION                               |    6 
 fCalendar-270.75/fCalendar/R/DaylightSavingTime.R                    | 9069 +++++-----
 fCalendar-270.75/fCalendar/R/genDaylightSavingTime.R                 |    5 
 fCalendar-270.75/fCalendar/R/listFinCenter.R                         |   12 
 fCalendar-270.75/fCalendar/inst/unitTests/runit.Coercion.R           |only
 fCalendar-270.75/fCalendar/inst/unitTests/runit.DaylightSavingTime.R |   32 
 7 files changed, 4685 insertions(+), 4439 deletions(-)

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Package adimpro updated to version 0.6.3.1 with previous version 0.6.3 dated 2008-05-21

Author: Karsten Tabelow , Joerg Polzehl
Title: Adaptive Smoothing of Digital Images
Description: This package implements tools for manipulationg digital images and the Propagation Separation approach by Polzehl and Spokoiny (2006) for smoothing digital images.

Diff between adimpro versions 0.6.3 dated 2008-05-21 and 0.6.3.1 dated 2008-06-03

 DESCRIPTION |    6 +++---
 R/io.R      |    2 +-
 README      |    9 +++++++++
 demo/io.r   |    5 ++++-
 4 files changed, 17 insertions(+), 5 deletions(-)

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Package qAnalyst updated to version 0.5.3 with previous version 0.5.2 dated 2008-05-07

Author: Andrea Spano'
Title: Variables and Attributes Control Charts
Description: qAnalyst performs: control charts for variables and attributes according to Douglas C. Montgomery Introduction to Statistical Quality Control book, Capability analysis for normal and non - normal distributions and Distributions Identification

Diff between qAnalyst versions 0.5.2 dated 2008-05-07 and 0.5.3 dated 2008-06-03

 DESCRIPTION         |    8 ++++----
 R/getParameterFun.R |    2 +-
 R/spc.R             |    7 +++----
 README              |    3 +++
 4 files changed, 11 insertions(+), 9 deletions(-)

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New package bayesGARCH with initial version 1-00.01
Package: bayesGARCH
Version: 1-00.01
Date: 2008-06-03
Title: Bayesian Estimation of the GARCH(1,1) Model with Student's t Innovations
Author: David Ardia
Maintainer: David Ardia
Depends: mvtnorm, coda
Description: This package provides the bayesGARCH function which performs the Bayesian estimation of the GARCH(1,1) model with Student's t innovations.
License: GPL (>=2)
URL: http://perso.unifr.ch/david.ardia
Packaged: Tue Jun 3 13:10:19 2008; David Ardia

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New package picante with initial version 0.1-2
Package: picante
Type: Package
Title: Tools for integrating phylogenies and ecology
Version: 0.1-2
Date: 2008-5-30
Author: Steve Kembel , David Ackerly , Simon Blomberg , Peter Cowan , Cam Webb
Maintainer: Steve Kembel
Depends: ape, vegan
Suggests: circular
Description: Phylocom integration, community analyses, null-models, traits and evolution in R
License: GPL-2
Packaged: Tue Jun 3 08:36:18 2008; hornik

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Package PolynomF updated to version 0.93 with previous version 0.92 dated 2008-06-01

Author: Bill Venables
Title: Polynomials in R
Description: Implements univariate polynomial operations in R

Diff between PolynomF versions 0.92 dated 2008-06-01 and 0.93 dated 2008-06-03

 DESCRIPTION            |    4 ++--
 man/integral.Rd        |    2 +-
 man/plot.polynom.Rd    |    2 +-
 man/poly.calc.Rd       |    2 +-
 man/solve.polynom.Rd   |    2 +-
 man/summary.polynom.Rd |    2 +-
 src/poly_mult.c        |    2 +-
 7 files changed, 8 insertions(+), 8 deletions(-)

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