Fri, 06 Jun 2008

New package uncompress with initial version 1.0
Package: uncompress
Version: 1.0
Date: 2008-06-05
Title: Uncompress
Author: Nicholas Vinen
Maintainer: Nicholas Vinen
Description: This R Add-On provides the function uncompress::uncompress(raw) for decompressing .Z files. It returns the decompressed data as a raw (binary) string. The compressed data is passed in in the same format. It returns NULL if the input data is invalid.
License: Unlimited
Packaged: Thu Jun 5 21:18:16 2008; hb

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Package sampleSelection updated to version 0.5-5 with previous version 0.5-3 dated 2008-02-27

Author: Arne Henningsen , Ott Toomet
Title: Sample Selection Models
Description: Estimation of Sample Selection Models

Diff between sampleSelection versions 0.5-3 dated 2008-02-27 and 0.5-5 dated 2008-06-06

 DESCRIPTION                     |    6 
 INDEX                           |   11 
 R/coef.probit.R                 |only
 R/coef.selection.R              |    2 
 R/fitted.probit.R               |only
 R/fitted.selection.R            |only
 R/heckit2fit.R                  |    7 
 R/heckit5fit.R                  |   17 
 R/model.frame.probit.R          |   15 
 R/model.frame.selection.R       |only
 R/model.matrix.selection.R      |only
 R/print.coef.selection.R        |    5 
 R/probit.R                      |    4 
 R/residuals.probit.R            |only
 R/residuals.selection.R         |only
 R/selection.R                   |   25 
 R/summary.selection.R           |   12 
 R/tobit5fit.R                   |   10 
 man/coef.probit.Rd              |only
 man/fitted.probit.Rd            |only
 man/fitted.selection.Rd         |only
 man/model.frame.probit.Rd       |only
 man/model.frame.selection.Rd    |only
 man/model.matrix.probit.Rd      |only
 man/model.matrix.selection.Rd   |only
 man/residuals.probit.Rd         |only
 man/residuals.selection.Rd      |only
 man/sampleSelection-internal.Rd |   13 
 man/selection.Rd                |    5 
 man/summary.probit.Rd           |only
 tests/heckit.R                  |   33 
 tests/heckit.Rout.save          |11835 ++++++++++
 tests/probit.R                  |   13 
 tests/probit.Rout.save          | 1915 +
 tests/selection.R               |   93 
 tests/selection.Rout.save       |45064 +++++++++++++++++++++++++++++++++++++++-
 36 files changed, 58933 insertions(+), 152 deletions(-)

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Package relimp updated to version 0.9-9 with previous version 0.9-8 dated 2008-03-27

Author: David Firth with contributions from Heather Turner
Title: Relative Contribution of Effects in a Regression Model
Description: Functions to facilitate inference on the relative importance of predictors in a linear or generalized linear model, and a couple of useful Tcl/Tk widgets.

Diff between relimp versions 0.9-8 dated 2008-03-27 and 0.9-9 dated 2008-06-06

 DESCRIPTION     |   11 -
 NAMESPACE       |    2 
 R/pickFrom.R    |  479 +++++++++++++++++++++++++++++++-------------------------
 R/showData.R    |    2 
 man/pickFrom.Rd |   38 ++--
 5 files changed, 301 insertions(+), 231 deletions(-)

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Package plotrix updated to version 2.4-3 with previous version 2.4-2 dated 2008-05-21

Author: Jim Lemon , Ben Bolker , Sander Oom , Eduardo Klein , Barry Rowlingson , Hadley Wickham , Anupam Tyagi , Olivier Eterradossi , Gabor Grothendieck , Michael Toews John Kane
Title: Various plotting functions
Description: Lots of plots, various labeling, axis and color scaling functions.

Diff between plotrix versions 2.4-2 dated 2008-05-21 and 2.4-3 dated 2008-06-06

 DESCRIPTION        |    6 +++---
 R/barhier.R        |    5 +++--
 R/gantt.R          |    1 -
 R/stackpoly.R      |    3 ++-
 R/vectorField.R    |    6 ++++--
 man/barhier.Rd     |    6 ++++--
 man/stackpoly.Rd   |   15 +++++++++++----
 man/vectorField.Rd |   34 +++++++++++++++++++++++++++++-----
 8 files changed, 56 insertions(+), 20 deletions(-)

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Package lpSolve updated to version 5.6.3 with previous version 5.6.2 dated 2008-05-07

Author: Michel Berkelaar and others
Title: Interface to Lp_solve v. 5.5 to solve linear/integer programs
Description: Lp_solve is freely available (under LGPL 2) software for solving linear, integer and mixed integer programs. In this implementation we supply a "wrapper" function in C and some R functions that solve general linear/integer problems, assignment problems, and transportation problems. This version calls lp_solve version 5.5.

Diff between lpSolve versions 5.6.2 dated 2008-05-07 and 5.6.3 dated 2008-06-06

 DESCRIPTION |    4 ++--
 R/lp.R      |   10 +++++-----
 2 files changed, 7 insertions(+), 7 deletions(-)

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Package gamlss.tr updated to version 1.9-0 with previous version 1.7-0 dated 2007-10-03

Author: Mikis Stasinopoulos , Bob Rigby
Title: Generating and fitting truncated (gamlss.family) distributions
Description: This is an add on package to GAMLSS. The purpose of this package is to allow users to defined truncated distributions in GAMLSS models. The main function gen.trun() generates truncated version of an existing GAMLSS family distribution.

Diff between gamlss.tr versions 1.7-0 dated 2007-10-03 and 1.9-0 dated 2008-06-06

 DESCRIPTION              |    6 +--
 R/gen.trun.R             |   10 +++---
 R/trun.R                 |   71 +++++++++++++++++++++++++++++++----------------
 man/gamlss.tr.package.Rd |    2 -
 man/gen.trun.Rd          |    2 -
 man/trun.Rd              |    6 +--
 man/trun.d.Rd            |    2 -
 man/trun.p.Rd            |    2 -
 man/trun.q.Rd            |    2 -
 man/trun.r.Rd            |    2 -
 10 files changed, 66 insertions(+), 39 deletions(-)

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Package gamlss.nl updated to version 1.9-0 with previous version 1.7-0 dated 2007-10-03

Author: Mikis Stasinopoulos , Bob Rigby with contributions from Philippe Lambert.
Title: Fitting non linear parametric GAMLSS models
Description: This is an add on package to GAMLSS. It allows one extra method for fitting GAMLSS models. The main function nlgamlss() can fit any parametric (up to four parameter) GAMLSS distribution.

Diff between gamlss.nl versions 1.7-0 dated 2007-10-03 and 1.9-0 dated 2008-06-06

 DESCRIPTION         |    6 +++---
 R/finterp.default.R |   20 ++++++++++----------
 R/fmobj.R           |   14 +++++++-------
 R/nlgamlss.R        |    2 +-
 4 files changed, 21 insertions(+), 21 deletions(-)

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Package gamlss.mx updated to version 1.9-0 with previous version 1.7-0 dated 2007-10-03

Author: Mikis Stasinopoulos , Bob Rigby
Title: A GAMLSS add on package for fitting mixture distributions
Description: The main purpose of this package is to allow fitting of mixture distributions with GAMLSS models.

Diff between gamlss.mx versions 1.7-0 dated 2007-10-03 and 1.9-0 dated 2008-06-06

 gamlss.mx-1.7-0/gamlss.mx/R/gamlssMX-10-4-07.R  |only
 gamlss.mx-1.9-0/gamlss.mx/DESCRIPTION           |    8 ++--
 gamlss.mx-1.9-0/gamlss.mx/NAMESPACE             |   18 +++++----
 gamlss.mx-1.9-0/gamlss.mx/R/gamlssMX-10-11-07.R |only
 gamlss.mx-1.9-0/gamlss.mx/R/gamlssNP.R          |   44 +++++++++++++-----------
 5 files changed, 39 insertions(+), 31 deletions(-)

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Package gamlss.dist updated to version 1.9-0 with previous version 1.8-0 dated 2008-01-16

Author: Mikis Stasinopoulos , Bob Rigby with contributions from Calliope Akantziliotou, Raydonal Ospina and Nicoletta Motpan.
Title: Extra distributions to be used for GAMLSS modelling.
Description: This package contains few extra distributions for GAMLSS modelling.

Diff between gamlss.dist versions 1.8-0 dated 2008-01-16 and 1.9-0 dated 2008-06-06

 gamlss.dist-1.8-0/gamlss.dist/src/tofy.f       |only
 gamlss.dist-1.8-0/gamlss.dist/src/tofys.f      |only
 gamlss.dist-1.9-0/gamlss.dist/DESCRIPTION      |    6 
 gamlss.dist-1.9-0/gamlss.dist/NAMESPACE        |    2 
 gamlss.dist-1.9-0/gamlss.dist/R/BEOI.r         |  130 +++++++----------
 gamlss.dist-1.9-0/gamlss.dist/R/BEZI.r         |  112 ++++++--------
 gamlss.dist-1.9-0/gamlss.dist/R/DELAPORT.R     |  191 +++++++++++++++----------
 gamlss.dist-1.9-0/gamlss.dist/R/EGB2.R         |   95 +++++++-----
 gamlss.dist-1.9-0/gamlss.dist/R/EXP.R          |    4 
 gamlss.dist-1.9-0/gamlss.dist/R/GB1.R          |  154 ++++++++++----------
 gamlss.dist-1.9-0/gamlss.dist/R/GB2.R          |  144 ++++++++++--------
 gamlss.dist-1.9-0/gamlss.dist/R/GG.R           |   32 ++--
 gamlss.dist-1.9-0/gamlss.dist/R/GIG.R          |   47 +++---
 gamlss.dist-1.9-0/gamlss.dist/R/GT.R           |   44 +++--
 gamlss.dist-1.9-0/gamlss.dist/R/NOF.R          |   32 ++--
 gamlss.dist-1.9-0/gamlss.dist/R/RGE.R          |   21 +-
 gamlss.dist-1.9-0/gamlss.dist/R/SEP1.R         |   54 ++++---
 gamlss.dist-1.9-0/gamlss.dist/R/SEP2.R         |   47 +++---
 gamlss.dist-1.9-0/gamlss.dist/R/SEP3.R         |   42 +++--
 gamlss.dist-1.9-0/gamlss.dist/R/SEP4.R         |   43 +++--
 gamlss.dist-1.9-0/gamlss.dist/R/SHASH.R        |   46 +++---
 gamlss.dist-1.9-0/gamlss.dist/R/SICHEL.R       |  151 +++++++++++--------
 gamlss.dist-1.9-0/gamlss.dist/R/ST1.R          |   43 +++--
 gamlss.dist-1.9-0/gamlss.dist/R/ST2.R          |   44 +++--
 gamlss.dist-1.9-0/gamlss.dist/R/ST3.R          |   73 +++++----
 gamlss.dist-1.9-0/gamlss.dist/R/ST4.R          |   44 +++--
 gamlss.dist-1.9-0/gamlss.dist/R/ST5.R          |   40 +++--
 gamlss.dist-1.9-0/gamlss.dist/R/WEI3.R         |   10 -
 gamlss.dist-1.9-0/gamlss.dist/R/ZIP2.R         |   13 -
 gamlss.dist-1.9-0/gamlss.dist/R/exGAUS.R       |   47 +++---
 gamlss.dist-1.9-0/gamlss.dist/data/stylo.r     |only
 gamlss.dist-1.9-0/gamlss.dist/man/CD4.Rd       |only
 gamlss.dist-1.9-0/gamlss.dist/man/LGAclaims.Rd |only
 gamlss.dist-1.9-0/gamlss.dist/man/RGE.Rd       |    9 -
 gamlss.dist-1.9-0/gamlss.dist/man/SICHEL.Rd    |    5 
 gamlss.dist-1.9-0/gamlss.dist/man/alveolar.Rd  |only
 gamlss.dist-1.9-0/gamlss.dist/man/computer.Rd  |only
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 gamlss.dist-1.9-0/gamlss.dist/man/lice.Rd      |only
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 gamlss.dist-1.9-0/gamlss.dist/man/parzen.Rd    |  144 ------------------
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 gamlss.dist-1.9-0/gamlss.dist/src/cdfSICHEL.f  |only
 gamlss.dist-1.9-0/gamlss.dist/src/tofydel.f    |only
 gamlss.dist-1.9-0/gamlss.dist/src/tofysin.f    |    4 
 47 files changed, 978 insertions(+), 895 deletions(-)

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Package gamlss.cens updated to version 1.9.0 with previous version 1.7.0 dated 2007-10-03

Author: Mikis Stasinopoulos , Bob Rigby , Nicoleta Mortan
Title: Fitting an interval response variable using gamlss.family distributions
Description: This is an add on package to GAMLSS. The purpose of this package is to allow users to fit interval response variables in GAMLSS models. The main function gen.cens() generates a censored version of an existing GAMLSS family distribution.

Diff between gamlss.cens versions 1.7.0 dated 2007-10-03 and 1.9.0 dated 2008-06-06

 DESCRIPTION                |   12 ++---
 NAMESPACE                  |    4 -
 R/cens.R                   |   83 ++++++++++++++++++++++------------
 R/cens.d.R                 |    5 --
 R/cens.p.R                 |    3 -
 R/gen.cens.R               |   10 ++--
 man/cens.Rd                |  108 ++++++++++++++++++++++++++++++++++-----------
 man/cens.d.Rd              |   19 ++++---
 man/cens.p.Rd              |   16 ++++--
 man/cens.q.Rd              |   25 +++++++---
 man/gamlss.cens-package.Rd |   30 +++++++-----
 man/gen.cens.Rd            |   26 +++++++---
 man/lip.Rd                 |   53 +++++++++++-----------
 13 files changed, 254 insertions(+), 140 deletions(-)

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Package gamlss updated to version 1.9-0 with previous version 1.8-0 dated 2008-01-16

Author: Mikis Stasinopoulos , Bob Rigby with contributions from Calliope Akantziliotou.
Title: Generalized Additive Models for Location Scale and Shape.
Description: The main GAMLSS library and datasets.

Diff between gamlss versions 1.8-0 dated 2008-01-16 and 1.9-0 dated 2008-06-06

 gamlss-1.8-0/gamlss/tests                    |only
 gamlss-1.9-0/gamlss/DESCRIPTION              |    6 
 gamlss-1.9-0/gamlss/NAMESPACE                |    9 
 gamlss-1.9-0/gamlss/R/BB.R                   |   17 -
 gamlss-1.9-0/gamlss/R/BCCG.R                 |   36 +--
 gamlss-1.9-0/gamlss/R/BCPE.R                 |   70 +++----
 gamlss-1.9-0/gamlss/R/BCT.R                  |   65 +++---
 gamlss-1.9-0/gamlss/R/BE.R                   |   14 -
 gamlss-1.9-0/gamlss/R/BEINF.R                |   41 ++--
 gamlss-1.9-0/gamlss/R/BEo.R                  |only
 gamlss-1.9-0/gamlss/R/BI.R                   |    7 
 gamlss-1.9-0/gamlss/R/GA.R                   |   10 -
 gamlss-1.9-0/gamlss/R/GU.R                   |   10 -
 gamlss-1.9-0/gamlss/R/HistDist.R             |    8 
 gamlss-1.9-0/gamlss/R/IG.R                   |   12 -
 gamlss-1.9-0/gamlss/R/JSU.R                  |   46 ++--
 gamlss-1.9-0/gamlss/R/JSUo.R                 |   46 ++--
 gamlss-1.9-0/gamlss/R/LNO.R                  |   10 -
 gamlss-1.9-0/gamlss/R/Logistic.R             |   10 -
 gamlss-1.9-0/gamlss/R/NBI.R                  |   13 -
 gamlss-1.9-0/gamlss/R/NBII.R                 |   17 +
 gamlss-1.9-0/gamlss/R/NET.R                  |   22 +-
 gamlss-1.9-0/gamlss/R/NO.r                   |   23 +-
 gamlss-1.9-0/gamlss/R/PE.R                   |   26 +-
 gamlss-1.9-0/gamlss/R/PE2.R                  |   28 +-
 gamlss-1.9-0/gamlss/R/PIG.R                  |   10 -
 gamlss-1.9-0/gamlss/R/PROFILE.R              |    6 
 gamlss-1.9-0/gamlss/R/RG.R                   |   10 -
 gamlss-1.9-0/gamlss/R/SEP.R                  |   52 +++--
 gamlss-1.9-0/gamlss/R/SI.R                   |   26 +-
 gamlss-1.9-0/gamlss/R/TF.R                   |   23 +-
 gamlss-1.9-0/gamlss/R/VGD.R                  |  122 ++++++++++++
 gamlss-1.9-0/gamlss/R/WEI.R                  |   10 -
 gamlss-1.9-0/gamlss/R/WEI2.R                 |   10 -
 gamlss-1.9-0/gamlss/R/ZAIG.R                 |   22 +-
 gamlss-1.9-0/gamlss/R/ZIP.R                  |   15 -
 gamlss-1.9-0/gamlss/R/cs.R                   |   73 ++++---
 gamlss-1.9-0/gamlss/R/cubicSplinesNewS.R     |only
 gamlss-1.9-0/gamlss/R/extra.R                |  128 ++++++++----
 gamlss-1.9-0/gamlss/R/findhyper.R            |   25 +-
 gamlss-1.9-0/gamlss/R/gamlss.R               |    2 
 gamlss-1.9-0/gamlss/R/logNO.R                |   10 -
 gamlss-1.9-0/gamlss/R/lpred.R                |    4 
 gamlss-1.9-0/gamlss/R/make-link-gamlss-new.R |  143 ++++++++------
 gamlss-1.9-0/gamlss/R/par_plot.R             |  211 +++++++++++++--------
 gamlss-1.9-0/gamlss/R/po.r                   |    4 
 gamlss-1.9-0/gamlss/R/predict-gamlss.R       |   81 +++++++-
 gamlss-1.9-0/gamlss/R/profterm.R             |   20 +-
 gamlss-1.9-0/gamlss/R/ra.R                   |    8 
 gamlss-1.9-0/gamlss/R/random.R               |    2 
 gamlss-1.9-0/gamlss/R/rc.R                   |    2 
 gamlss-1.9-0/gamlss/R/rqresplot.R            |   31 +--
 gamlss-1.9-0/gamlss/R/term-plot.R            |    2 
 gamlss-1.9-0/gamlss/R/vcov_gamlss.R          |  267 ++++++++++++++++++++++++---
 gamlss-1.9-0/gamlss/R/wp.R                   |    2 
 gamlss-1.9-0/gamlss/inst/doc/NEWS.txt        |   33 +++
 gamlss-1.9-0/gamlss/man/BE.Rd                |   41 ++--
 gamlss-1.9-0/gamlss/man/VGD.Rd               |   55 ++++-
 gamlss-1.9-0/gamlss/man/checklink.Rd         |    5 
 gamlss-1.9-0/gamlss/man/cs.Rd                |   35 ++-
 gamlss-1.9-0/gamlss/man/findhyper.Rd         |    8 
 gamlss-1.9-0/gamlss/man/gamlss.cs.Rd         |    6 
 gamlss-1.9-0/gamlss/man/gamlss.ra.Rd         |    2 
 gamlss-1.9-0/gamlss/man/gamlss.random.Rd     |    2 
 gamlss-1.9-0/gamlss/man/gamlss.rc.Rd         |    2 
 gamlss-1.9-0/gamlss/man/make.link.gamlss.Rd  |  116 ++++++++---
 gamlss-1.9-0/gamlss/man/predict.gamlss.Rd    |    9 
 67 files changed, 1470 insertions(+), 711 deletions(-)

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Package SparseM updated to version 0.78 with previous version 0.77 dated 2008-03-31

Author: Roger Koenker and Pin Ng
Title: Sparse Linear Algebra
Description: Basic linear algebra for sparse matrices

Diff between SparseM versions 0.77 dated 2008-03-31 and 0.78 dated 2008-06-06

 DESCRIPTION          |    4 ++--
 R/SparseM.R          |    8 +++++---
 REVISIONS            |    4 ++++
 inst/doc/SparseM.pdf |binary
 4 files changed, 11 insertions(+), 5 deletions(-)

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