Title: Software for constructing genetic maps in outcrossing species
Description: Analysis of molecular marker data from non-model systems to simultaneously estimate linkage and linkage phases (genetic map construction)
Diff between onemap versions 0.1-0 dated 2008-06-08 and 0.1-1 dated 2008-06-10
DESCRIPTION | 6 +++--- inst/doc/Tutorial_OneMap.pdf |binary man/onemap-package.Rd | 4 ++-- src/Makevars.win |only src/threepts.c | 4 ++-- src/threepts.h | 2 +- src/twopts.c | 6 +++--- src/twopts.h | 4 ++-- 8 files changed, 13 insertions(+), 13 deletions(-)
More information about onemap at CRAN
posted at: 05:18 | path: /cran/updated | permanent link to this entry
Package mratios updated to version 1.3.8 with previous version 1.3.7 dated 2008-04-14
Author: Gemechis Dilba, Mario Hasler, Frank Schaarschmidt
Title: Inferences for ratios of coefficients in the general linear model
Description: With this package, it is possible to perform (simultaneous) inferences for ratios of linear combinations of coefficients in the
general linear model. In particular, tests and confidence interval estimations for ratios of
treatment means in the normal one-way layout and confidence interval estimations like in (multiple) slope ratio
and parallel line assays can be carried out. Moreover, it is possible to calculate the sample sizes required in comparisons
with a control based on relative margins. For the simple two-sample problem, functions for a t-test for ratio-formatted
hypotheses and the corresponding Fieller confidence interval are provided assuming homogeneous or heterogeneous group variances.
Diff between mratios versions 1.3.7 dated 2008-04-14 and 1.3.8 dated 2008-06-10
DESCRIPTION | 6 +++--- R/ratioVH.R | 16 ++++++++-------- R/sci.ratio.gen.R | 10 +++++----- R/sci.ratioI.R | 12 ++++++------ R/t.test.ratio.default.R | 4 ++++ man/BW.Rd | 2 -- man/Mutagenicity.Rd | 2 -- man/SRAssay.rd | 4 +--- man/sci.ratio.gen.Rd | 4 +--- man/sci.ratioVH.Rd | 2 -- man/simtest.ratioVH.Rd | 2 -- man/summary.sci.ratio.Rd | 3 +-- 12 files changed, 29 insertions(+), 38 deletions(-)
More information about mratios at CRAN
posted at: 05:18 | path: /cran/updated | permanent link to this entry
Package monomvn updated to version 1.3 with previous version 1.2 dated 2008-05-19
Author: Robert B. Gramacy
Diff between monomvn versions 1.2 dated 2008-05-19 and 1.3 dated 2008-06-10
More information about monomvn at CRAN
Package fgui updated to version 0.2.1 with previous version 0.2 dated 2008-05-25 Author: Thomas Hoffmann
Diff between fgui versions 0.2 dated 2008-05-25 and 0.2.1 dated 2008-06-10
More information about fgui at CRAN
Package arm updated to version 1.1-7 with previous version 1.1-6 dated 2008-06-04 Author: Andrew Gelman
Diff between arm versions 1.1-6 dated 2008-06-04 and 1.1-7 dated 2008-06-10
More information about arm at CRAN
New package PSM with initial version 0.7
More information about PSM at CRAN
Package MCPAN updated to version 1.1-6 with previous version 1.1-5 dated 2008-05-13 Author: Frank Schaarschmidt, Daniel Gerhard, Martin Sill
Diff between MCPAN versions 1.1-5 dated 2008-05-13 and 1.1-6 dated 2008-06-10
More information about MCPAN at CRAN
Title: Estimation for multivariate normal data with monotone missingness
Description: Estimation of multivariate normal data of arbitrary dimension
where the pattern of missing data is monotone. Through the use of
parsimonious/shrinkage regressions (plsr, pcr, lasso, ridge, etc.),
where standard regressions fail, the package can handle an
(almost) arbitrary amount of missing data. The current version
supports maximum likelihood inference and an alpha implementation
of a Bayesian version employing a Bayesian lasso. A fully
functional standalone (beta) interface to the Bayesian lasso
(from Park & Casella) with model selection is also provided
ChangeLog | 22 +
DESCRIPTION | 10
R/blasso.R | 120 ++++-
R/blasso.s3.R | 66 ++-
R/bmonomvn.R | 97 +++-
R/gamma.R | 16
R/monomvn.s3.R | 10
man/blasso.Rd | 149 ++++++-
man/blasso.s3.Rd | 12
man/bmonomvn.Rd | 60 +-
man/monomvn-internal.Rd | 1
src/blasso.cc | 999 +++++++++++++++++++++++++++++++++++++++++-------
src/blasso.h | 170 +++++---
src/bmonomvn.cc | 113 +++--
src/bmonomvn.h | 55 +-
src/matrix.c | 52 ++
src/matrix.h | 4
17 files changed, 1590 insertions(+), 366 deletions(-)
posted at: 05:18 | path: /cran/updated | permanent link to this entry
Title: Function GUI
Description: Rapidly create a GUI interface for a function you created by automatically creating widgets for arguments of the function. Automatically parses help routines for context-sensative help to these arguments. The interface essentially a wrapper to some tcltk routines to both simplify and facilitate GUI creation. More advanced tcltk routines/GUI objects can be incorporated into the interface for greater customization for the more experienced.
DESCRIPTION | 6 +++---
R/fguiWindow.R | 4 ++--
R/widgets.R | 47 ++++++++++++++++++++++++++++++++++++++++-------
man/gui.Rd | 12 ++++--------
4 files changed, 49 insertions(+), 20 deletions(-)
posted at: 05:18 | path: /cran/updated | permanent link to this entry
Title: Data Analysis Using Regression and Multilevel/Hierarchical Models
Description: R functions for processing lm, glm, mer and polr outputs.
CHANGELOG | 5 +++++
DESCRIPTION | 6 +++---
R/AllClass.R | 1 +
R/AllGeneric.R | 9 +++++++--
R/traceplot.R | 27 ++++++++++++++++++++++++++-
man/traceplot.Rd | 1 +
6 files changed, 43 insertions(+), 6 deletions(-)
posted at: 05:18 | path: /cran/updated | permanent link to this entry
Package: PSM
Type: Package
Title: Non-Linear Mixed-Effects modelling using Stochastic Differential Equations.
Version: 0.7
Date: 2008-06-04
Encoding: latin1
Author: Stig Mortensen
Maintainer: Søren Klim
Depends: MASS, numDeriv, odesolve
Description: This package provides functions for estimation of linear and non-linear mixed-effects models using stochastic differential equations. Moreover it provides functions for finding smoothed estimates of model states and for simulation. The package allows for any multivariate non-linear time-variant model to be specified, and it also handels multidimentional input, co-variates, missing observations and specification of dosage regimen.
License: GPL (>=2)
URL: http://www.imm.dtu.dk/psm
Packaged: Tue Jun 10 04:39:27 2008; theussl
posted at: 05:18 | path: /cran/new | permanent link to this entry
Title: Multiple comparisons using normal approximation
Description: Multiple contrast tests and simultaneous confidence
intervals based on normal approximation. With implementations for
binomial proportions in a 2xk setting (risk difference and odds ratio),
poly-3-adjusted tumour rates, and multiple comparisons of biodiversity indices.
Approximative power calculation for multiple contrast tests of binomial
proportions.
DESCRIPTION | 8 +++---
R/Shannon.R | 9 ++++---
R/Simpson.R | 11 +++++++--
man/MCPAN-package.Rd | 5 ----
man/Shannonci.Rd | 2 -
man/Simpsonci.Rd | 2 -
man/Waldtest.Rd | 2 -
man/binomORci.Rd | 3 --
man/censsample.Rd | 3 --
man/censsamplef.Rd | 3 --
man/corrMatgen.Rd | 4 ---
man/estShannon.Rd | 6 -----
man/estShannonf.Rd | 2 -
man/estSimpsonf.Rd | 2 -
man/plot.sci.Rd | 4 ---
man/plotCII.Rd | 61 ++++++++++++++++++++++++++++++++++++++++++++++++++-
man/poly3ci.Rd | 3 --
man/powermcp.Rd | 2 -
man/scalechoice.Rd | 7 ++---
19 files changed, 89 insertions(+), 50 deletions(-)
posted at: 05:18 | path: /cran/updated | permanent link to this entry