Package: diffractometry
Type: Package
Title: Baseline identification and peak decomposition for x-ray diffractograms
Version: 0.1-00
Date: 2008-06-12
Author: P.L. Davies, U. Gather, M. Meise, D.Mergel, T. Mildenberger. Additional Code by T. Bernholt and T. Hofmeister
Maintainer: T. Mildenberger
Description: Residual-based baseline identification and peak decomposition for x-ray diffractograms as introduced in Davies/Gather/Mergel/Meise/Mildenberger (2008).
License: GPL (>= 2)
Packaged: Fri Jun 13 10:51:00 2008; mildenberger
More information about diffractometry at CRAN
posted at: 13:18 | path: /cran/new | permanent link to this entry
Package PARccs updated to version 0.1-1 with previous version 0.01 dated 2008-04-30
Author: Christiane Raemsch
Title: Estimation of partial attributable risks (PAR) from case-control data
Description: Functions to estimate partial attributable risks from case-control data with
corresponding percentile or BCa confidence intervals
Diff between PARccs versions 0.01 dated 2008-04-30 and 0.1-1 dated 2008-06-13
DESCRIPTION | 4 ++-- R/Boot_CI.R | 2 +- man/Boot_CI.Rd | 2 +- 3 files changed, 4 insertions(+), 4 deletions(-)
More information about PARccs at CRAN
posted at: 13:18 | path: /cran/updated | permanent link to this entry
Package qAnalyst updated to version 0.5.4 with previous version 0.5.3 dated 2008-06-03
Author: Andrea Spano'
Title: Variables and Attributes Control Charts
Description: qAnalyst performs: control charts for variables and attributes according to Douglas C. Montgomery Introduction to Statistical Quality Control book, Capability analysis for normal and non - normal distributions and Distributions Identification
Diff between qAnalyst versions 0.5.3 dated 2008-06-03 and 0.5.4 dated 2008-06-13
DESCRIPTION | 6 - R/spc.R | 247 ++++++++++++++++++++++++++------------------------------ R/summary.spc.R | 126 ++++++++++++---------------- README | 11 ++ man/spc.Rd | 2 5 files changed, 190 insertions(+), 202 deletions(-)
More information about qAnalyst at CRAN
posted at: 05:19 | path: /cran/updated | permanent link to this entry
Package minet updated to version 1.1.5 with previous version 1.1.3 dated 2008-03-03
Author: Patrick E. Meyer, Frederic Lafitte, Gianluca Bontempi
Title: Mutual Information Network Inference
Description: This package implements various algorithms for inferring mutual information networks from data.
All the algorithms compute the mutual information matrix in order to infer a network.
Several mutual information estimators are implemented.
Diff between minet versions 1.1.3 dated 2008-03-03 and 1.1.5 dated 2008-06-13
minet-1.1.3/minet/data/bcell.rda |only minet-1.1.3/minet/man/bcell.Rd |only minet-1.1.5/minet/CHANGES | 8 minet-1.1.5/minet/DESCRIPTION | 8 minet-1.1.5/minet/R/aracne.net.R | 2 minet-1.1.5/minet/R/build.mim.R | 74 minet-1.1.5/minet/R/clr.net.R | 2 minet-1.1.5/minet/R/disc.R | 10 minet-1.1.5/minet/R/minet.R | 28 minet-1.1.5/minet/R/mr.net.R | 2 minet-1.1.5/minet/R/validate.R | 2 minet-1.1.5/minet/R/vis.res.R | 14 minet-1.1.5/minet/demo/demo.R | 12 minet-1.1.5/minet/inst/doc/courbes.pdf |only minet-1.1.5/minet/inst/doc/graph.pdf |only minet-1.1.5/minet/inst/doc/minet.Rnw | 428 +++ minet-1.1.5/minet/inst/doc/minet.bib |only minet-1.1.5/minet/inst/doc/minet.pdf | 4031 ++++++++++++++++++++++++++------- minet-1.1.5/minet/inst/doc/minet.tex | 492 +++- minet-1.1.5/minet/man/aracne.net.Rd | 25 minet-1.1.5/minet/man/build.mim.Rd | 35 minet-1.1.5/minet/man/clr.net.Rd | 21 minet-1.1.5/minet/man/disc.Rd | 24 minet-1.1.5/minet/man/minet.Rd | 29 minet-1.1.5/minet/man/mr.net.Rd | 23 minet-1.1.5/minet/man/norm.Rd | 7 minet-1.1.5/minet/man/syn.data.Rd | 22 minet-1.1.5/minet/man/syn.net.Rd | 43 minet-1.1.5/minet/man/validate.Rd | 22 minet-1.1.5/minet/man/vis.res.Rd | 43 minet-1.1.5/minet/src/disc.cpp | 5 minet-1.1.5/minet/src/mim.cpp | 217 - minet-1.1.5/minet/src/minet.cpp | 1 minet-1.1.5/minet/src/minet.h | 5 minet-1.1.5/minet/src/symmetrize.cpp | 1 35 files changed, 4314 insertions(+), 1322 deletions(-)
More information about minet at CRAN
posted at: 05:18 | path: /cran/updated | permanent link to this entry
Package mefa updated to version 1.1-2 with previous version 1.1-0 dated 2008-03-21
Author: Peter Solymos
Title: Multivariate count data handling in ecology and biogeography
Description: R package for multivariate count data handling in ecology and biogeography. The name 'mefa' stands for the term 'metafaunistics' indicating that data handling is the most critical and sometimes most time consuming part of data analysis. The package contains object classes and functions to manipulate basic biotic (sample/species/count or crosstabulated) count data and relational attribute tables for samples and species. Functions can handle segments (eg. life stages, gender) within the count data and samples with zero count. Reports are generated in plain text or LaTeX format.
Diff between mefa versions 1.1-0 dated 2008-03-21 and 1.1-2 dated 2008-06-13
mefa-1.1-0/mefa/R/xytrend.R |only mefa-1.1-0/mefa/inst/doc/Rplots.ps |only mefa-1.1-0/mefa/man/report.mefa.Rd |only mefa-1.1-0/mefa/man/xytrend.Rd |only mefa-1.1-2/mefa/DESCRIPTION | 12 ++-- mefa-1.1-2/mefa/R/accumulate.R | 27 +++++---- mefa-1.1-2/mefa/R/as.xcount.R | 11 +++ mefa-1.1-2/mefa/R/mefa.R | 21 ++++++- mefa-1.1-2/mefa/R/report.mefa.R | 12 +++- mefa-1.1-2/mefa/R/zzz.R |only mefa-1.1-2/mefa/demo/dolina.R | 4 + mefa-1.1-2/mefa/inst/CITATION |only mefa-1.1-2/mefa/inst/ChangeLog | 18 ++++++ mefa-1.1-2/mefa/inst/doc/mefa-vignette.Rnw | 60 +++++++++++---------- mefa-1.1-2/mefa/inst/doc/mefa-vignette.pdf |binary mefa-1.1-2/mefa/man/accumulate.Rd | 23 +++++--- mefa-1.1-2/mefa/man/add.attrib.Rd | 24 ++++---- mefa-1.1-2/mefa/man/amf.Rd | 11 +-- mefa-1.1-2/mefa/man/as.xcount.Rd | 18 ++---- mefa-1.1-2/mefa/man/binmat.Rd | 4 - mefa-1.1-2/mefa/man/check.attrib.Rd | 6 +- mefa-1.1-2/mefa/man/dol.sample.Rd | 2 mefa-1.1-2/mefa/man/drtsscount.Rd | 6 -- mefa-1.1-2/mefa/man/exclmf.Rd | 16 +++-- mefa-1.1-2/mefa/man/fill.count.Rd | 5 - mefa-1.1-2/mefa/man/inflate.Rd | 6 +- mefa-1.1-2/mefa/man/ivgen.Rd | 13 ++-- mefa-1.1-2/mefa/man/landsnail.Rd | 2 mefa-1.1-2/mefa/man/mapmf.Rd | 1 mefa-1.1-2/mefa/man/marmat.Rd | 12 ++-- mefa-1.1-2/mefa/man/mefa-package.Rd | 12 ++-- mefa-1.1-2/mefa/man/mefa.Rd | 80 ++++++++++++++++++++++++----- mefa-1.1-2/mefa/man/mefadocs.Rd | 2 mefa-1.1-2/mefa/man/mefaweb.Rd | 4 - mefa-1.1-2/mefa/man/msscount.Rd | 4 - mefa-1.1-2/mefa/man/mxcount.Rd | 2 mefa-1.1-2/mefa/man/qdef.Rd | 2 mefa-1.1-2/mefa/man/sscount.Rd | 10 +-- mefa-1.1-2/mefa/man/strify.Rd | 7 +- mefa-1.1-2/mefa/man/ttsscount.Rd | 3 - mefa-1.1-2/mefa/man/vsample.Rd | 2 mefa-1.1-2/mefa/man/xcount.Rd | 8 +- mefa-1.1-2/mefa/man/xorder.Rd | 2 43 files changed, 287 insertions(+), 165 deletions(-)
More information about mefa at CRAN
posted at: 05:18 | path: /cran/updated | permanent link to this entry
New package lpSolveAPI with initial version 5.5.0.12-2
More information about lpSolveAPI at CRAN
Package gRain updated to version 0.3.3 with previous version 0.3.2 dated 2008-05-07 Author: Søren Højsgaard
Diff between gRain versions 0.3.2 dated 2008-05-07 and 0.3.3 dated 2008-06-13
More information about gRain at CRAN
Package doBy updated to version 3.1 with previous version 3.0 dated 2008-05-21 Author: Søren Højsgaard
Diff between doBy versions 3.0 dated 2008-05-21 and 3.1 dated 2008-06-13
More information about doBy at CRAN
Package diveMove updated to version 0.9.1 with previous version 0.9.0 dated 2008-01-29 Author: Sebastian P. Luque
Diff between diveMove versions 0.9.0 dated 2008-01-29 and 0.9.1 dated 2008-06-13
More information about diveMove at CRAN
Package crosshybDetector updated to version 1.0.3 with previous version 1.0.1 dated 2007-07-31 Author: Paolo Uva
Diff between crosshybDetector versions 1.0.1 dated 2007-07-31 and 1.0.3 dated 2008-06-13
More information about crosshybDetector at CRAN
Package MasterBayes updated to version 2.22 with previous version 2.21 dated 2008-04-14 Author: Jarrod Hadfield
Diff between MasterBayes versions 2.21 dated 2008-04-14 and 2.22 dated 2008-06-13
More information about MasterBayes at CRAN
Package: lpSolveAPI
Version: 5.5.0.12-2
Date: 2008-06-12
Title: Interface to lp_solve v. 5.5
Author: lp_solve
Maintainer: Kjell Konis
Depends: R (>= 2.7.0)
Description: The lpSolveAPI package provides an R interface to the lp_solve
library API - lp_solve is a Mixed Integer Linear Programming (MILP) solver
with support for pure linear, (mixed) integer/binary, semi-continuous
and special ordered sets (SOS) models.
License: LGPL-2
Packaged: Thu Jun 12 15:21:44 2008; konis
posted at: 05:18 | path: /cran/new | permanent link to this entry
Title: Graphical Independence Networks
Description: A package for probability propagation in graphical independence networks, also known as probabilistic expert systems (which includes Bayesian networks as a special case).
ChangeLog | 7 +++++++
DESCRIPTION | 4 ++--
R/Graphsh-mcs-moral-rip.R | 21 ++++++++++++---------
R/Graphsh-triangulate.R | 9 +++------
R/gmInstance.R | 12 ++++++++----
inst/doc/gRain-intro.pdf |binary
man/gmInstance.Rd | 11 +++++++++++
7 files changed, 43 insertions(+), 21 deletions(-)
posted at: 05:18 | path: /cran/updated | permanent link to this entry
Title: Groupwise computations of summary statistics and other utilities
Description: Facilities for groupwise computations of summary statistics and other facilities for working with grouped data (similar to what can be achieved by proc means or proc summary of the SAS system).
doBy-3.0/doBy/inst/doc/.build.timestamp |only
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doBy-3.1/doBy/R/summaryBy.R | 29 -
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doBy-3.1/doBy/inst/doc/doBy.pdf | 730 ++++++++++++++++----------------
doBy-3.1/doBy/man/splitBy.Rd | 8
9 files changed, 425 insertions(+), 375 deletions(-)
posted at: 05:18 | path: /cran/updated | permanent link to this entry
Title: Dive analysis and calibration
Description: Functions to filter and summarize time-depth recorder (TDR)
data, and miscellaneous functions for handling location data.
ChangeLog | 16
DESCRIPTION | 4
R/plotTD.R | 65 +-
R/readLocs.R | 4
R/speedStats.R | 3
README | 5
inst/doc/Rplots.pdf |only
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man/diveStats.Rd | 8
man/dives.Rd | 12
man/sealLocs.Rd | 10
11 files changed, 787 insertions(+), 764 deletions(-)
posted at: 05:18 | path: /cran/updated | permanent link to this entry
Title: Detection of cross-hybridization events in microarray experiments
Description: Functions for identification of probes potentially affected by cross-hybridizations in microarray experiments. Includes functions for diagnostic plots. The package contains code from the dismissed pairseqsim package (removed in BioConductor > 1.9 ), created by Witold Wolski
DESCRIPTION | 10 +++++-----
R/crosshyb2xls.R | 12 ++++++------
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README | 16 +++++++++++++---
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man/salign-methods.Rd |only
man/testalign-methods.Rd |only
src |only
22 files changed, 31 insertions(+), 19 deletions(-)
posted at: 05:18 | path: /cran/updated | permanent link to this entry
Title: ML and MCMC Methods for Pedigree Reconstruction and Analysis
Description: The primary aim of MasterBayes is to use MCMC techniques to integrate over uncertainty in pedigree configurations estimated from molecular markers and phenotypic data. Emphasis is put on the marginal distribution of parameters that relate the phenotypic data to the pedigree. All simulation is done in compiled C++ for efficency.
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MasterBayes-2.22/MasterBayes/R/getXlist.R | 23
MasterBayes-2.22/MasterBayes/R/getsPandtP.R | 3
MasterBayes-2.22/MasterBayes/R/popsize.loglik.R | 2
MasterBayes-2.22/MasterBayes/R/simgenotypes.R | 12
MasterBayes-2.22/MasterBayes/R/varPed.R | 65
MasterBayes-2.22/MasterBayes/inst/doc/Figures/Tutorial.Rnw | 19
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MasterBayes-2.22/MasterBayes/src/legalG.cc | 6
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posted at: 05:18 | path: /cran/updated | permanent link to this entry