Author: Robin K. S. Hankin
Title: The hypergeometric function
Description: The hypergeometric function, hypergeo(), for complex numbers
Diff between hypergeo versions 1.1-3 dated 2008-05-13 and 1.1-6 dated 2008-06-13
DESCRIPTION | 6 +++--- INDEX | 2 +- R/hypergeo.R | 14 +++++++------- man/f15.3.10.Rd | 4 +++- man/hypergeo_A_nonpos_int.Rd | 4 +++- tests/aaa.R | 12 ++++++++++-- 6 files changed, 27 insertions(+), 15 deletions(-)
More information about diffractometry at CRAN
Permanent link
Author: Christiane Raemsch
Title: Estimation of partial attributable risks (PAR) from case-control data
Description: Functions to estimate partial attributable risks from case-control data with
corresponding percentile or BCa confidence intervals
Diff between PARccs versions 0.01 dated 2008-04-30 and 0.1-1 dated 2008-06-13
DESCRIPTION | 4 ++-- R/Boot_CI.R | 2 +- man/Boot_CI.Rd | 2 +- 3 files changed, 4 insertions(+), 4 deletions(-)
Author: Andrea Spano'
Title: Variables and Attributes Control Charts
Description: qAnalyst performs: control charts for variables and attributes according to Douglas C. Montgomery Introduction to Statistical Quality Control book, Capability analysis for normal and non - normal distributions and Distributions Identification
Diff between qAnalyst versions 0.5.3 dated 2008-06-03 and 0.5.4 dated 2008-06-13
DESCRIPTION | 6 - R/spc.R | 247 ++++++++++++++++++++++++++------------------------------ R/summary.spc.R | 126 ++++++++++++---------------- README | 11 ++ man/spc.Rd | 2 5 files changed, 190 insertions(+), 202 deletions(-)
Author: Patrick E. Meyer, Frederic Lafitte, Gianluca Bontempi
Title: Mutual Information Network Inference
Description: This package implements various algorithms for inferring mutual information networks from data.
All the algorithms compute the mutual information matrix in order to infer a network.
Several mutual information estimators are implemented.
Diff between minet versions 1.1.3 dated 2008-03-03 and 1.1.5 dated 2008-06-13
minet-1.1.3/minet/data/bcell.rda |only minet-1.1.3/minet/man/bcell.Rd |only minet-1.1.5/minet/CHANGES | 8 minet-1.1.5/minet/DESCRIPTION | 8 minet-1.1.5/minet/R/aracne.net.R | 2 minet-1.1.5/minet/R/build.mim.R | 74 minet-1.1.5/minet/R/clr.net.R | 2 minet-1.1.5/minet/R/disc.R | 10 minet-1.1.5/minet/R/minet.R | 28 minet-1.1.5/minet/R/mr.net.R | 2 minet-1.1.5/minet/R/validate.R | 2 minet-1.1.5/minet/R/vis.res.R | 14 minet-1.1.5/minet/demo/demo.R | 12 minet-1.1.5/minet/inst/doc/courbes.pdf |only minet-1.1.5/minet/inst/doc/graph.pdf |only minet-1.1.5/minet/inst/doc/minet.Rnw | 428 +++ minet-1.1.5/minet/inst/doc/minet.bib |only minet-1.1.5/minet/inst/doc/minet.pdf | 4031 ++++++++++++++++++++++++++------- minet-1.1.5/minet/inst/doc/minet.tex | 492 +++- minet-1.1.5/minet/man/aracne.net.Rd | 25 minet-1.1.5/minet/man/build.mim.Rd | 35 minet-1.1.5/minet/man/clr.net.Rd | 21 minet-1.1.5/minet/man/disc.Rd | 24 minet-1.1.5/minet/man/minet.Rd | 29 minet-1.1.5/minet/man/mr.net.Rd | 23 minet-1.1.5/minet/man/norm.Rd | 7 minet-1.1.5/minet/man/syn.data.Rd | 22 minet-1.1.5/minet/man/syn.net.Rd | 43 minet-1.1.5/minet/man/validate.Rd | 22 minet-1.1.5/minet/man/vis.res.Rd | 43 minet-1.1.5/minet/src/disc.cpp | 5 minet-1.1.5/minet/src/mim.cpp | 217 - minet-1.1.5/minet/src/minet.cpp | 1 minet-1.1.5/minet/src/minet.h | 5 minet-1.1.5/minet/src/symmetrize.cpp | 1 35 files changed, 4314 insertions(+), 1322 deletions(-)
Author: Peter Solymos
Title: Multivariate count data handling in ecology and biogeography
Description: R package for multivariate count data handling in ecology and biogeography. The name 'mefa' stands for the term 'metafaunistics' indicating that data handling is the most critical and sometimes most time consuming part of data analysis. The package contains object classes and functions to manipulate basic biotic (sample/species/count or crosstabulated) count data and relational attribute tables for samples and species. Functions can handle segments (eg. life stages, gender) within the count data and samples with zero count. Reports are generated in plain text or LaTeX format.
Diff between mefa versions 1.1-0 dated 2008-03-21 and 1.1-2 dated 2008-06-13
mefa-1.1-0/mefa/R/xytrend.R |only mefa-1.1-0/mefa/inst/doc/Rplots.ps |only mefa-1.1-0/mefa/man/report.mefa.Rd |only mefa-1.1-0/mefa/man/xytrend.Rd |only mefa-1.1-2/mefa/DESCRIPTION | 12 ++-- mefa-1.1-2/mefa/R/accumulate.R | 27 +++++---- mefa-1.1-2/mefa/R/as.xcount.R | 11 +++ mefa-1.1-2/mefa/R/mefa.R | 21 ++++++- mefa-1.1-2/mefa/R/report.mefa.R | 12 +++- mefa-1.1-2/mefa/R/zzz.R |only mefa-1.1-2/mefa/demo/dolina.R | 4 + mefa-1.1-2/mefa/inst/CITATION |only mefa-1.1-2/mefa/inst/ChangeLog | 18 ++++++ mefa-1.1-2/mefa/inst/doc/mefa-vignette.Rnw | 60 +++++++++++---------- mefa-1.1-2/mefa/inst/doc/mefa-vignette.pdf |binary mefa-1.1-2/mefa/man/accumulate.Rd | 23 +++++--- mefa-1.1-2/mefa/man/add.attrib.Rd | 24 ++++---- mefa-1.1-2/mefa/man/amf.Rd | 11 +-- mefa-1.1-2/mefa/man/as.xcount.Rd | 18 ++---- mefa-1.1-2/mefa/man/binmat.Rd | 4 - mefa-1.1-2/mefa/man/check.attrib.Rd | 6 +- mefa-1.1-2/mefa/man/dol.sample.Rd | 2 mefa-1.1-2/mefa/man/drtsscount.Rd | 6 -- mefa-1.1-2/mefa/man/exclmf.Rd | 16 +++-- mefa-1.1-2/mefa/man/fill.count.Rd | 5 - mefa-1.1-2/mefa/man/inflate.Rd | 6 +- mefa-1.1-2/mefa/man/ivgen.Rd | 13 ++-- mefa-1.1-2/mefa/man/landsnail.Rd | 2 mefa-1.1-2/mefa/man/mapmf.Rd | 1 mefa-1.1-2/mefa/man/marmat.Rd | 12 ++-- mefa-1.1-2/mefa/man/mefa-package.Rd | 12 ++-- mefa-1.1-2/mefa/man/mefa.Rd | 80 ++++++++++++++++++++++++----- mefa-1.1-2/mefa/man/mefadocs.Rd | 2 mefa-1.1-2/mefa/man/mefaweb.Rd | 4 - mefa-1.1-2/mefa/man/msscount.Rd | 4 - mefa-1.1-2/mefa/man/mxcount.Rd | 2 mefa-1.1-2/mefa/man/qdef.Rd | 2 mefa-1.1-2/mefa/man/sscount.Rd | 10 +-- mefa-1.1-2/mefa/man/strify.Rd | 7 +- mefa-1.1-2/mefa/man/ttsscount.Rd | 3 - mefa-1.1-2/mefa/man/vsample.Rd | 2 mefa-1.1-2/mefa/man/xcount.Rd | 8 +- mefa-1.1-2/mefa/man/xorder.Rd | 2 43 files changed, 287 insertions(+), 165 deletions(-)
Author: Søren Højsgaard
Diff between gRain versions 0.3.2 dated 2008-05-07 and 0.3.3 dated 2008-06-13
Title: Graphical Independence Networks
Description: A package for probability propagation in graphical independence networks, also known as probabilistic expert systems (which includes Bayesian networks as a special case).
ChangeLog | 7 +++++++
DESCRIPTION | 4 ++--
R/Graphsh-mcs-moral-rip.R | 21 ++++++++++++---------
R/Graphsh-triangulate.R | 9 +++------
R/gmInstance.R | 12 ++++++++----
inst/doc/gRain-intro.pdf |binary
man/gmInstance.Rd | 11 +++++++++++
7 files changed, 43 insertions(+), 21 deletions(-)
Author: Søren Højsgaard
Diff between doBy versions 3.0 dated 2008-05-21 and 3.1 dated 2008-06-13
Title: Groupwise computations of summary statistics and other utilities
Description: Facilities for groupwise computations of summary statistics and other facilities for working with grouped data (similar to what can be achieved by proc means or proc summary of the SAS system).
doBy-3.0/doBy/inst/doc/.build.timestamp |only
doBy-3.1/doBy/ChangeLog | 8
doBy-3.1/doBy/DESCRIPTION | 4
doBy-3.1/doBy/NAMESPACE | 3
doBy-3.1/doBy/R/splitBy.R | 3
doBy-3.1/doBy/R/summaryBy.R | 29 -
doBy-3.1/doBy/inst/doc/doBy.Rnw | 15
doBy-3.1/doBy/inst/doc/doBy.pdf | 730 ++++++++++++++++----------------
doBy-3.1/doBy/man/splitBy.Rd | 8
9 files changed, 425 insertions(+), 375 deletions(-)
Author: Sebastian P. Luque
Diff between diveMove versions 0.9.0 dated 2008-01-29 and 0.9.1 dated 2008-06-13
Title: Dive analysis and calibration
Description: Functions to filter and summarize time-depth recorder (TDR)
data, and miscellaneous functions for handling location data.
ChangeLog | 16
DESCRIPTION | 4
R/plotTD.R | 65 +-
R/readLocs.R | 4
R/speedStats.R | 3
README | 5
inst/doc/Rplots.pdf |only
inst/doc/diveMove.pdf | 1424 ++++++++++++++++++++++++--------------------------
man/diveStats.Rd | 8
man/dives.Rd | 12
man/sealLocs.Rd | 10
11 files changed, 787 insertions(+), 764 deletions(-)
Author: Paolo Uva
Diff between crosshybDetector versions 1.0.1 dated 2007-07-31 and 1.0.3 dated 2008-06-13
More information about crosshybDetector at CRAN
Title: Detection of cross-hybridization events in microarray experiments
Description: Functions for identification of probes potentially affected by cross-hybridizations in microarray experiments. Includes functions for diagnostic plots. The package contains code from the dismissed pairseqsim package (removed in BioConductor > 1.9 ), created by Witold Wolski
DESCRIPTION | 10 +++++-----
R/crosshyb2xls.R | 12 ++++++------
R/seqsim.R |only
R/zzz.R |only
README | 16 +++++++++++++---
data/EBLOSUM50.rda |only
data/EBLOSUM62.rda |only
data/EPAM110.rda |only
man/AAAlignment-class.Rd |only
man/AAAlphabet-class.Rd |only
man/AASequence-class.Rd |only
man/AASequence.Rd |only
man/AASequenceList-class.Rd |only
man/EPAM110.Rd |only
man/Submatrix-class.Rd |only
man/crosshybDetector.package.Rd | 10 ++++++----
man/crosshyb_func.Rd | 2 +-
man/listdist-methods.Rd |only
man/readFasta-methods.Rd |only
man/salign-methods.Rd |only
man/testalign-methods.Rd |only
src |only
22 files changed, 31 insertions(+), 19 deletions(-)
Permanent link
Author: Jarrod Hadfield
Title: ML and MCMC Methods for Pedigree Reconstruction and Analysis
Description: The primary aim of MasterBayes is to use MCMC techniques to integrate over uncertainty in pedigree configurations estimated from molecular markers and phenotypic data. Emphasis is put on the marginal distribution of parameters that relate the phenotypic data to the pedigree. All simulation is done in compiled C++ for efficency.
Diff between MasterBayes versions 2.21 dated 2008-04-14 and 2.22 dated 2008-06-13
MasterBayes-2.21/MasterBayes/inst/doc/MasterBayes.Tutorial.aux |only MasterBayes-2.21/MasterBayes/inst/doc/MasterBayes.Tutorial.log |only MasterBayes-2.21/MasterBayes/inst/doc/MasterBayes.Tutorial.pdf |only MasterBayes-2.21/MasterBayes/inst/doc/MasterBayes.Tutorial.toc |only MasterBayes-2.21/MasterBayes/inst/doc/Tutorial.Rnw |only MasterBayes-2.21/MasterBayes/inst/doc/x.log |only MasterBayes-2.22/MasterBayes/DESCRIPTION | 4 MasterBayes-2.22/MasterBayes/R/MCMCped.R | 12 MasterBayes-2.22/MasterBayes/R/MLE.popsize.R | 12 MasterBayes-2.22/MasterBayes/R/beta.loglik.R | 2 MasterBayes-2.22/MasterBayes/R/getXlist.R | 23 MasterBayes-2.22/MasterBayes/R/getsPandtP.R | 3 MasterBayes-2.22/MasterBayes/R/popsize.loglik.R | 2 MasterBayes-2.22/MasterBayes/R/simgenotypes.R | 12 MasterBayes-2.22/MasterBayes/R/varPed.R | 65 MasterBayes-2.22/MasterBayes/inst/doc/Figures/Tutorial.Rnw | 19 MasterBayes-2.22/MasterBayes/inst/doc/MasterBayes.bib | 9 MasterBayes-2.22/MasterBayes/inst/doc/Tutorial-006.pdf | 6 MasterBayes-2.22/MasterBayes/inst/doc/Tutorial-007.pdf | 6 MasterBayes-2.22/MasterBayes/inst/doc/Tutorial-008.pdf | 6 MasterBayes-2.22/MasterBayes/inst/doc/Tutorial-009.pdf | 6 MasterBayes-2.22/MasterBayes/inst/doc/Tutorial-022.eps | 6278 +- MasterBayes-2.22/MasterBayes/inst/doc/Tutorial-022.pdf | 7048 +-- MasterBayes-2.22/MasterBayes/inst/doc/Tutorial-027.eps | 5881 +- MasterBayes-2.22/MasterBayes/inst/doc/Tutorial-027.pdf | 7057 +-- MasterBayes-2.22/MasterBayes/inst/doc/Tutorial-030.eps | 5560 +- MasterBayes-2.22/MasterBayes/inst/doc/Tutorial-030.pdf | 6538 +-- MasterBayes-2.22/MasterBayes/inst/doc/Tutorial-035.eps |15699 +++---- MasterBayes-2.22/MasterBayes/inst/doc/Tutorial-035.pdf |20034 ++++----- MasterBayes-2.22/MasterBayes/inst/doc/Tutorial-039.eps | 5621 +- MasterBayes-2.22/MasterBayes/inst/doc/Tutorial-039.pdf | 6533 +-- MasterBayes-2.22/MasterBayes/inst/doc/Tutorial-043.eps | 5923 +- MasterBayes-2.22/MasterBayes/inst/doc/Tutorial-043.pdf | 6534 +-- MasterBayes-2.22/MasterBayes/inst/doc/Tutorial-047.eps | 5820 +- MasterBayes-2.22/MasterBayes/inst/doc/Tutorial-047.pdf | 6532 +-- MasterBayes-2.22/MasterBayes/inst/doc/Tutorial-050.eps | 3943 - 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MasterBayes-2.22/MasterBayes/inst/doc/Tutorial-model.DSconfig.pdf | 4101 - MasterBayes-2.22/MasterBayes/inst/doc/Tutorial-model.INT.cntr.eps |15731 +++---- MasterBayes-2.22/MasterBayes/inst/doc/Tutorial-model.INT.cntr.pdf |20916 ++++----- MasterBayes-2.22/MasterBayes/inst/doc/Tutorial-model.INT.eps |15075 +++---- MasterBayes-2.22/MasterBayes/inst/doc/Tutorial-model.INT.pdf |21014 +++++----- MasterBayes-2.22/MasterBayes/inst/doc/Tutorial-model.ass.mat.eps | 6563 +-- MasterBayes-2.22/MasterBayes/inst/doc/Tutorial-model.ass.mat.pdf | 7054 +-- MasterBayes-2.22/MasterBayes/inst/doc/Tutorial-model.config.eps | 5820 +- MasterBayes-2.22/MasterBayes/inst/doc/Tutorial-model.config.pdf | 6532 +-- MasterBayes-2.22/MasterBayes/inst/doc/Tutorial-model.dupEE2.eps | 5923 +- MasterBayes-2.22/MasterBayes/inst/doc/Tutorial-model.dupEE2.pdf | 6534 +-- MasterBayes-2.22/MasterBayes/inst/doc/Tutorial-model.miss.eps | 6062 +- MasterBayes-2.22/MasterBayes/inst/doc/Tutorial-model.miss.pdf | 7068 +-- MasterBayes-2.22/MasterBayes/inst/doc/Tutorial-model.miss2.eps | 6310 +-- MasterBayes-2.22/MasterBayes/inst/doc/Tutorial-model.miss2.pdf | 7184 +-- MasterBayes-2.22/MasterBayes/inst/doc/Tutorial-model.miss2US.eps | 5948 +- MasterBayes-2.22/MasterBayes/inst/doc/Tutorial-model.miss2US.pdf | 6931 +-- MasterBayes-2.22/MasterBayes/inst/doc/Tutorial-model.missTest.eps | 6201 +- MasterBayes-2.22/MasterBayes/inst/doc/Tutorial-model.missTest.pdf | 7067 +-- MasterBayes-2.22/MasterBayes/inst/doc/Tutorial-model.missUS.eps | 6245 +- MasterBayes-2.22/MasterBayes/inst/doc/Tutorial-model.missUS.pdf | 7060 +-- MasterBayes-2.22/MasterBayes/inst/doc/Tutorial-model2beta.eps | 6278 +- MasterBayes-2.22/MasterBayes/inst/doc/Tutorial-model2beta.pdf | 7048 +-- MasterBayes-2.22/MasterBayes/inst/doc/Tutorial-model3beta.eps | 5881 +- MasterBayes-2.22/MasterBayes/inst/doc/Tutorial-model3beta.pdf | 7057 +-- MasterBayes-2.22/MasterBayes/inst/doc/Tutorial-model4US.eps | 5560 +- MasterBayes-2.22/MasterBayes/inst/doc/Tutorial-model4US.pdf | 6538 +-- MasterBayes-2.22/MasterBayes/inst/doc/Tutorial-model5.eps |15699 +++---- MasterBayes-2.22/MasterBayes/inst/doc/Tutorial-model5.pdf |20034 ++++----- MasterBayes-2.22/MasterBayes/inst/doc/Tutorial-model6US.eps | 5621 +- MasterBayes-2.22/MasterBayes/inst/doc/Tutorial-model6US.pdf | 6533 +-- MasterBayes-2.22/MasterBayes/inst/doc/Tutorial-mon1.eps |11236 ++--- MasterBayes-2.22/MasterBayes/inst/doc/Tutorial-mon1.pdf |14041 +++--- MasterBayes-2.22/MasterBayes/inst/doc/Tutorial-mon2.eps |11655 ++--- MasterBayes-2.22/MasterBayes/inst/doc/Tutorial-mon2.pdf |14055 +++--- MasterBayes-2.22/MasterBayes/inst/doc/Tutorial-ys.eps | 6246 +- MasterBayes-2.22/MasterBayes/inst/doc/Tutorial-ys.pdf | 7056 +-- MasterBayes-2.22/MasterBayes/inst/doc/Tutorial.aux | 118 MasterBayes-2.22/MasterBayes/inst/doc/Tutorial.bbl | 8 MasterBayes-2.22/MasterBayes/inst/doc/Tutorial.blg | 60 MasterBayes-2.22/MasterBayes/inst/doc/Tutorial.log | 211 MasterBayes-2.22/MasterBayes/inst/doc/Tutorial.pdf |binary MasterBayes-2.22/MasterBayes/inst/doc/Tutorial.tex | 133 MasterBayes-2.22/MasterBayes/inst/doc/Tutorial.toc | 20 MasterBayes-2.22/MasterBayes/man/varPed.Rd | 9 MasterBayes-2.22/MasterBayes/src/LikFunctions.cc | 15 MasterBayes-2.22/MasterBayes/src/MCMCped.cc | 1 MasterBayes-2.22/MasterBayes/src/SampD.cc | 42 MasterBayes-2.22/MasterBayes/src/SampP.cc | 541 MasterBayes-2.22/MasterBayes/src/SampS.cc | 32 MasterBayes-2.22/MasterBayes/src/legalG.cc | 6 126 files changed, 387631 insertions(+), 386929 deletions(-)