Wed, 18 Jun 2008

Package SDDA updated to version 1.0-3 with previous version 1.0-1 dated 2008-06-02

Author: CSIRO Bioinformatics, Glenn Stone
Title: Stepwise Diagonal Discriminant Analysis
Description: Stepwsie Diagonal Discriminant Analysis - a fast algorithm for building multivariate classifiers

Diff between SDDA versions 1.0-1 dated 2008-06-02 and 1.0-3 dated 2008-06-18

 DESCRIPTION |    6 +++---
 LICENSE     |    2 +-
 man/sdda.Rd |    8 +++++---
 3 files changed, 9 insertions(+), 7 deletions(-)

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Package rrcov updated to version 0.4-06 with previous version 0.4-05 dated 2008-02-26

Author: Valentin Todorov
Title: Scalable Robust Estimators with High Breakdown Point
Description: Robust Location and Scatter Estimation and Robust Multivariate Analysis with High Breakdown Point.

Diff between rrcov versions 0.4-05 dated 2008-02-26 and 0.4-06 dated 2008-06-18

 ChangeLog                   |   12 
 DESCRIPTION                 |    6 
 INDEX                       |    9 
 NAMESPACE                   |   14 
 R/AllClasses.R              |    4 
 R/CovClassic.R              |    4 
 R/CovControl.R              |   14 
 R/CovMcd.R                  |    5 
 R/CovMest.R                 |    4 
 R/CovRobust.R               |    4 
 R/CovSest.R                 |   10 
 R/Pca.R                     |   12 
 R/PcaClassic.R              |    6 
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 R/PcaHubert.R               |    4 
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 man/lmom32.Rd               |   19 
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 man/plot-methods.Rd         |    2 
 tests/thubert.R             |   36 -
 tests/thubert.Rout.save     | 1402 +++++++++++++++++++++++++++++++++++++++++++-
 tests/tmcd4.Rout.save       |    6 
 tests/tmest.Rout.save       |    4 
 tests/tmest4.Rout.save      |    4 
 tests/tmve4.Rout.save       |    4 
 tests/togk4.Rout.save       |    4 
 40 files changed, 1575 insertions(+), 82 deletions(-)

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Package playwith updated to version 0.8-55 with previous version 0.8.51 dated 2008-02-05

Author: Felix Andrews
Title: A GUI for interactive plots using GTK+
Description: A graphical user interface for viewing and interacting with R plots. It tries to work out the structure of a plot, in order to interact with it. The built-in features include: navigating the data space, identifying data points, editing and annotating the plot, and saving to a file. New tools can be defined. This package is based on RGtk2, and so requires the GTK+ libraries.

Diff between playwith versions 0.8.51 dated 2008-02-05 and 0.8-55 dated 2008-06-18

 DESCRIPTION                    |   12 
 NAMESPACE                      |    3 
 R/API.R                        | 1634 +++++++++++++++++----------------
 R/playTools.R                  | 2025 ++++-------------------------------------
 R/playTools_annotate.R         |only
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 R/plotSettingsGui.R            | 1035 ++++++++++----------
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 38 files changed, 2940 insertions(+), 4243 deletions(-)

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Package picante updated to version 0.2-0 with previous version 0.1-2 dated 2008-06-03

Author: Steve Kembel , David Ackerly , Simon Blomberg , Peter Cowan , Matthew Helmus , Cam Webb
Title: Tools for integrating phylogenies and ecology
Description: Phylocom integration, community analyses, null-models, traits and evolution in R

Diff between picante versions 0.1-2 dated 2008-06-03 and 0.2-0 dated 2008-06-18

 DESCRIPTION            |    8 -
 R/phylodiversity.R     |  350 +++++++++++++++++++++++++++++++++++++++++++++++++
 R/specaccum.psr.R      |only
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 8 files changed, 358 insertions(+), 8 deletions(-)

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New package kml with initial version 0.9.0
Package: kml
Type: Package
Title: K-Means for Longitudinal data
Version: 0.9.0
Date: 2008-05-01
Author: Christophe M. Genolini
Maintainer: Christophe M. Genolini
Description: K-Means for Longitudinal data (kml) is a non parametric algorithm for clusterizing longitudinal data.
License: GPL (>= 2)
Lazyload: yes
Depends: methods,codetools,clv
URL: http:www.r-project.org,http://christophe.genolini.free.fr/kml
Collate: function.r partition.r longData.r imputation.r artificialLongData.r clusterization.r clusterizLongData.r
Encoding: latin1
Packaged: Tue Jun 17 20:57:01 2008; Christophe

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Package fortunes updated to version 1.3-5 with previous version 1.3-4 dated 2007-12-19

Author: Achim Zeileis, fortune contributions from Torsten Hothorn, Peter Dalgaard, Uwe Ligges, Kevin Wright, Martin Maechler, Kjetil Brinchmann Halvorsen, Kurt Hornik, Duncan Murdoch, Andy Bunn, Ray Brownrigg, Roger Bivand, Spencer Graves, Jim Lemon, Christian Kleiber, David L. Reiner, Berton Gunter, Roger Koenker, Charles Berry, Marc Schwartz, Michael Dewey, Ben Bolker, Peter Dunn
Title: R Fortunes
Description: R Fortunes

Diff between fortunes versions 1.3-4 dated 2007-12-19 and 1.3-5 dated 2008-06-18

 DESCRIPTION                |   10 +++++-----
 R/fortunes.R               |   18 +++++++++++-------
 inst/fortunes/fortunes.csv |   19 ++++++++++++++++---
 3 files changed, 32 insertions(+), 15 deletions(-)

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Package FitAR updated to version 1.5 with previous version 1.4 dated 2008-04-14

Author: A.I. McLeod and Ying Zhang
Title: Subset AR Model Fitting
Description: Complete functions are given for model identification, estimation and diagnostic checking for AR and subset AR models. Two types of subset AR models are supported. One family of subset AR models, denoted by ARp, is formed by taking subet of the original AR coefficients and in the other, denoted by ARz, subsets of the partial autocorrelations are used. The main advantage of the ARz model is its applicability to very large order models.

Diff between FitAR versions 1.4 dated 2008-04-14 and 1.5 dated 2008-06-18

 DESCRIPTION                      |    6 
 R/plot.FitAR.R                   |    4 
 R/plot.Selectmodel.R             |    5 
 man/FastLoglikelihoodAR.Rd       |    4 
 man/FitAR-package.Rd             |  295 +++++++++++++++++++++++++++++++++++++--
 man/FromSymmetricStorageUpper.Rd |    3 
 man/Get1G.Rd                     |    4 
 man/GetFitAR.Rd                  |    2 
 man/coef.FitAR.Rd                |    2 
 man/plot.FitAR.Rd                |    7 
 10 files changed, 305 insertions(+), 27 deletions(-)

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Package depmixS4 updated to version 0.1-1 with previous version 0.1-0 dated 2008-03-26

Author: Ingmar Visser , Maarten Speekenbrink
Title: Dependent Mixture Models
Description: Fit latent (hidden) Markov models on mixed categorical and continuous (timeseries) data, otherwise known as dependent mixture models

Diff between depmixS4 versions 0.1-0 dated 2008-03-26 and 0.1-1 dated 2008-06-18

 DESCRIPTION                |    6 +++---
 NAMESPACE                  |    1 -
 man/depmix-internal.Rd     |    2 +-
 man/depmix.Rd              |   28 ++++++++++++++++++++--------
 man/depmix.fit.Rd          |    4 ++--
 man/depmix.fitted-class.Rd |    2 +-
 man/response-class.Rd      |    2 +-
 man/response-classes.Rd    |    2 +-
 man/response.Rd            |    2 +-
 9 files changed, 30 insertions(+), 19 deletions(-)

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Package clinfun updated to version 0.8.1 with previous version 0.8.0 dated 2008-05-25

Author: Venkatraman E. Seshan
Title: Clinical Trial Design and Data Analysis Functions
Description: Utilities to make your clinical collaborations easier if not fun.

Diff between clinfun versions 0.8.0 dated 2008-05-25 and 0.8.1 dated 2008-06-18

 CHANGES         |    4 +
 DESCRIPTION     |    4 -
 R/gsdesign.R    |  145 ++++++++++++++++++++++++++++++--------------------------
 man/gsdesign.Rd |    9 ++-
 4 files changed, 91 insertions(+), 71 deletions(-)

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