Author: Carsten F. Dormann and Bernd Gruber, with additional code from Jochen Fruend, also based on C-code developed by Nils Bluethgen and by Miguel Rodriguez-Girones.
Title: Visualises bipartite networks and calculates some ecological indices.
Description: See bipartite-package for more details.
Diff between bipartite versions 0.72 dated 2008-05-25 and 0.73 dated 2008-06-19
bipartite-0.72/bipartite/Read-and-delete-me |only bipartite-0.73/bipartite/.hg |only bipartite-0.73/bipartite/.hgignore |only bipartite-0.73/bipartite/DESCRIPTION | 8 +- bipartite-0.73/bipartite/R/networklevel.R | 4 - bipartite-0.73/bipartite/R/visweb.R | 80 ++++++++++++---------- bipartite-0.73/bipartite/R/zzz.R | 3 bipartite-0.73/bipartite/Wishlist.txt | 3 bipartite-0.73/bipartite/man/bipartite-package.Rd | 4 - bipartite-0.73/bipartite/man/networklevel.Rd | 2 bipartite-0.73/bipartite/man/plotweb.Rd | 2 11 files changed, 59 insertions(+), 47 deletions(-)
Author: Simon Wood
Diff between mgcv versions 1.4-0 dated 2008-06-08 and 1.4-1 dated 2008-06-19
Title: GAMs with GCV smoothness estimation and GAMMs by REML/PQL
Description: Routines for GAMs and other generalized ridge regression
with multiple smoothing parameter selection by GCV or
UBRE/AIC. Also GAMMs by REML or PQL. Includes a gam()
function.
DESCRIPTION | 4 ++--
NAMESPACE | 2 +-
R/smooth.r | 21 +++++++++++++++++++--
changeLog | 9 +++++++++
man/smooth.construct.Rd | 6 +++---
5 files changed, 34 insertions(+), 8 deletions(-)
Author: Arne Henningsen
Diff between linprog versions 0.5-6 dated 2007-08-12 and 0.5-7 dated 2008-06-19
Title: Linear Programming / Optimization
Description: This package can be used to solve Linear Programming / Linear
Optimization problems by using the simplex algorithm.
DESCRIPTION | 10 +++++-----
man/solveLP.Rd | 2 +-
2 files changed, 6 insertions(+), 6 deletions(-)
Author: Jerome Friedman, Trevor Hastie and Rob Tibshirani
Title: Graphical lasso- estimation of Gaussian graphical models
Description: Graphical lasso
Diff between glasso versions 1.0 dated 2007-11-26 and 1.2 dated 2008-06-19
DESCRIPTION | 8 ++++---- R/glasso.R | 15 +++++++++++++-- man/glasso.Rd | 20 +++++++++++++++++++- 3 files changed, 36 insertions(+), 7 deletions(-)
Author: Erin Hodgess
Diff between RcmdrPlugin.epack versions 1.1-1 dated 2008-05-25 and 1.1-2 dated 2008-06-19
More information about RcmdrPlugin.epack at CRAN
Title: Rcmdr plugin for time series
Description: This package provides an Rcmdr "plug-in" based on the
time series functions. Contributors: G. Jay Kerns, John Fox, and Richard Heiberger.
DESCRIPTION | 8 -
R/RcmdrPlugin.epack.R | 275 +++++++++++++++++++++++++++++++++++++-
inst/etc/menus.txt | 10 -
man/RcmdrPlugin.epack-internal.Rd | 5
4 files changed, 289 insertions(+), 9 deletions(-)
Permanent link
Author: Stig Mortensen
Diff between PSM versions 0.8 dated 2008-06-12 and 0.8-1 dated 2008-06-19
Title: Non-Linear Mixed-Effects modelling using Stochastic Differential Equations.
Description: This package provides functions for estimation of linear and non-linear mixed-effects models using stochastic differential equations. Moreover it provides functions for finding smoothed estimates of model states and for simulation. The package allows for any multivariate non-linear time-variant model to be specified, and it also handels multidimentional input, co-variates, missing observations and specification of dosage regimen.
DESCRIPTION | 8 ++++----
R/PSM.template.R | 4 ++--
inst/doc/PSM.pdf |binary
3 files changed, 6 insertions(+), 6 deletions(-)
Author: Madeleine Cule, Robert Gramacy, Richard Samworth
Title: Maximum likelihood estimation of a log-concave density
Description: Computes the maximum likelihood estimator from an i.i.d. sample of data from a log-concave density in any number of dimensions. Plots are available for 1- and 2-d data.
Diff between LogConcDEAD versions 1.1-1 dated 2008-04-08 and 1.1-2 dated 2008-06-19
LogConcDEAD-1.1-1/LogConcDEAD/R/lcd.weights.R |only LogConcDEAD-1.1-1/LogConcDEAD/R/plot.LCDweights.R |only LogConcDEAD-1.1-1/LogConcDEAD/R/print.LCDweights.R |only LogConcDEAD-1.1-1/LogConcDEAD/man/lcd.weights.Rd |only LogConcDEAD-1.1-1/LogConcDEAD/man/plot.LCDweights.Rd |only LogConcDEAD-1.1-1/LogConcDEAD/src/logconeff.c |only LogConcDEAD-1.1-1/LogConcDEAD/src/sigmaeff.c |only LogConcDEAD-1.1-1/LogConcDEAD/src/solvopt2.c |only LogConcDEAD-1.1-1/LogConcDEAD/src/subgradeff.c |only LogConcDEAD-1.1-2/LogConcDEAD/.cvsignore |only LogConcDEAD-1.1-2/LogConcDEAD/ChangeLog | 4 LogConcDEAD-1.1-2/LogConcDEAD/DESCRIPTION | 4 LogConcDEAD-1.1-2/LogConcDEAD/R/lcd.mle.R | 150 +++++------ LogConcDEAD-1.1-2/LogConcDEAD/R/plot.LogConcDEAD.R | 188 ++++++-------- LogConcDEAD-1.1-2/LogConcDEAD/man/LogConcDEAD-internal.Rd | 1 LogConcDEAD-1.1-2/LogConcDEAD/man/lcd.mle.Rd | 29 +- LogConcDEAD-1.1-2/LogConcDEAD/src/convhullnew.c | 2 LogConcDEAD-1.1-2/LogConcDEAD/src/convhullnmlc.c | 2 LogConcDEAD-1.1-2/LogConcDEAD/src/logconweights.c | 16 - LogConcDEAD-1.1-2/LogConcDEAD/src/renormalise.c | 1 LogConcDEAD-1.1-2/LogConcDEAD/src/sigmaeffw.c | 14 - LogConcDEAD-1.1-2/LogConcDEAD/src/solvoptweights.c | 73 ++--- LogConcDEAD-1.1-2/LogConcDEAD/src/useful.c | 8 23 files changed, 241 insertions(+), 251 deletions(-)
Author: Dimitris Rizopoulos
Diff between JM versions 0.1-0 dated 2008-02-18 and 0.2-0 dated 2008-06-19
Title: Joint Modelling of Longitudinal and Survival Data
Description: Shared parameter models for the joint modelling of longitudinal and time-to-event data.
DESCRIPTION | 11 ++--
NAMESPACE | 8 ++-
R/MI.fixed.times.R |only
R/MI.random.times.R |only
R/chGH.fit.R | 8 +--
R/chLaplace.fit.R | 8 +--
R/coef.weibull.frailty.R |only
R/dmvt.R |only
R/logLik.weibull.frailty.R |only
R/onAttach.R | 2
R/posterior.b.R |only
R/print.summary.weibull.frailty.R |only
R/print.weibull.frailty.R |only
R/ranef.jointModel.R | 2
R/residuals.jointModel.R | 92 ++++++++++++++++++++++++++++++++++----
R/rmvt.R |only
R/summary.weibull.frailty.R |only
R/vcov.weibull.frailty.R |only
R/weibull.frailty.R |only
R/weibull.frailty.fit.R |only
R/weibullGH.fit.R | 6 +-
data/aids.id.rda |binary
data/aids.rda |binary
data/pbc2.id.rda |binary
data/pbc2.rda |binary
inst |only
man/JM.Rd | 6 +-
man/jointModel.Rd | 6 --
man/ranef.Rd | 5 +-
man/residuals.Rd | 64 +++++++++++++++++++++-----
man/summary.weibull.frailty.Rd |only
man/weibull.frailty.Rd |only
32 files changed, 170 insertions(+), 48 deletions(-)
Author: Markus Helbig
Diff between JGR versions 1.6-0 dated 2008-06-16 and 1.6-1 dated 2008-06-19
Title: JGR - Java Gui for R
Description: Java GUI for R - cross-platform, universal and unified Graphical User Interface for R. For full functionality on Windows and Mac OS X JGR requires a start application which depends on your OS. This can be downloaded from JGR's website: http://www.rosuda.org/JGR
DESCRIPTION | 2 +-
NEWS | 4 ++++
R/JGR.R | 4 ++--
inst/java/JGR.jar |binary
4 files changed, 7 insertions(+), 3 deletions(-)
Author: A.I. McLeod and Ying Zhang
Title: Subset AR Model Fitting
Description: Complete functions are given for model identification, estimation and diagnostic checking for AR and subset AR models. Two types of subset AR models are supported. One family of subset AR models, denoted by ARp, is formed by taking subet of the original AR coefficients and in the other, denoted by ARz, subsets of the partial autocorrelations are used. The main advantage of the ARz model is its applicability to very large order models.
Diff between FitAR versions 1.5 dated 2008-06-18 and 1.6 dated 2008-06-19
DESCRIPTION | 6 +++--- index | 3 ++- man/FitAR-package.Rd | 15 ++++++++++++--- 3 files changed, 17 insertions(+), 7 deletions(-)