Title: Spatial Survey Design and Analysis
Description: This group of functions implements algorithms required for design and analysis of probability surveys such as those utilized by the U.S. Environmental Protection Agency's Environmental Monitoring and Assessment Program (EMAP).
Diff between spsurvey versions 1.6.2 dated 2007-03-09 and 2.0 dated 2008-06-20
spsurvey-1.6.2/spsurvey/R/psurvey.analysis.s |only spsurvey-1.6.2/spsurvey/R/relrisk.s |only spsurvey-1.6.2/spsurvey/man/psurvey.analysis.Rd |only spsurvey-1.6.2/spsurvey/man/relrisk.Rd |only spsurvey-1.6.2/spsurvey/spsurvey.Rcheck |only spsurvey-2.0/spsurvey/DESCRIPTION | 10 spsurvey-2.0/spsurvey/INDEX | 15 spsurvey-2.0/spsurvey/NAMESPACE | 2 spsurvey-2.0/spsurvey/R/cat.analysis.s | 418 +++--- spsurvey-2.0/spsurvey/R/category.est.s | 545 +++------ spsurvey-2.0/spsurvey/R/catvar.prop.s | 143 +- spsurvey-2.0/spsurvey/R/catvar.size.s | 143 +- spsurvey-2.0/spsurvey/R/cdf.decon.s | 802 +++++++------ spsurvey-2.0/spsurvey/R/cdf.est.s | 736 ++++++------ spsurvey-2.0/spsurvey/R/cdf.plot.s |only spsurvey-2.0/spsurvey/R/cdf.prop.s | 144 +- spsurvey-2.0/spsurvey/R/cdf.size.prop.s | 152 +- spsurvey-2.0/spsurvey/R/cdf.size.total.s | 184 +-- spsurvey-2.0/spsurvey/R/cdf.test.prop.s |only spsurvey-2.0/spsurvey/R/cdf.test.s | 1441 +++++++++++++++++++----- spsurvey-2.0/spsurvey/R/cdf.test.size.prop.s |only spsurvey-2.0/spsurvey/R/cdf.total.s | 177 +- spsurvey-2.0/spsurvey/R/cdfvar.prop.s | 554 ++++----- spsurvey-2.0/spsurvey/R/cdfvar.size.prop.s | 570 ++++----- spsurvey-2.0/spsurvey/R/cdfvar.size.total.s | 648 +++++----- spsurvey-2.0/spsurvey/R/cdfvar.test.s | 422 +++++-- spsurvey-2.0/spsurvey/R/cdfvar.total.s | 631 +++++----- spsurvey-2.0/spsurvey/R/cont.analysis.s | 496 ++++---- spsurvey-2.0/spsurvey/R/cont.cdfplot.s |only spsurvey-2.0/spsurvey/R/cont.cdftest.s |only spsurvey-2.0/spsurvey/R/dcdf.prop.s | 132 +- spsurvey-2.0/spsurvey/R/dcdf.size.prop.s | 43 spsurvey-2.0/spsurvey/R/dcdf.size.total.s | 62 - spsurvey-2.0/spsurvey/R/dcdf.total.s | 165 +- spsurvey-2.0/spsurvey/R/dcdfvar.prop.s | 170 +- spsurvey-2.0/spsurvey/R/dcdfvar.size.prop.s | 177 +- spsurvey-2.0/spsurvey/R/dcdfvar.size.total.s | 229 ++- spsurvey-2.0/spsurvey/R/dcdfvar.total.s | 193 +-- spsurvey-2.0/spsurvey/R/dframe.check.s | 80 - spsurvey-2.0/spsurvey/R/grts.r | 107 + spsurvey-2.0/spsurvey/R/grtsarea.r | 2 spsurvey-2.0/spsurvey/R/grtslin.r | 2 spsurvey-2.0/spsurvey/R/grtspts.r | 24 spsurvey-2.0/spsurvey/R/input.check.s | 237 +-- spsurvey-2.0/spsurvey/R/interp.axis.s |only spsurvey-2.0/spsurvey/R/interp.cdf.s |only spsurvey-2.0/spsurvey/R/irs.r | 33 spsurvey-2.0/spsurvey/R/irsarea.r | 2 spsurvey-2.0/spsurvey/R/irslin.r | 2 spsurvey-2.0/spsurvey/R/marinus.s | 47 spsurvey-2.0/spsurvey/R/onLoad.r | 2 spsurvey-2.0/spsurvey/R/read.dbf.r | 8 spsurvey-2.0/spsurvey/R/read.sas.s |only spsurvey-2.0/spsurvey/R/read.shape.r | 6 spsurvey-2.0/spsurvey/R/relrisk.analysis.s |only spsurvey-2.0/spsurvey/R/relrisk.est.s |only spsurvey-2.0/spsurvey/R/relrisk.var.s | 56 spsurvey-2.0/spsurvey/R/sp2shape.r | 23 spsurvey-2.0/spsurvey/R/spsurvey.analysis.s |only spsurvey-2.0/spsurvey/R/total.est.s | 396 +++--- spsurvey-2.0/spsurvey/R/total.var.s | 152 +- spsurvey-2.0/spsurvey/R/warnprnt.s | 2 spsurvey-2.0/spsurvey/inst/doc/CHANGES.pdf |binary spsurvey-2.0/spsurvey/inst/doc/README.pdf |binary spsurvey-2.0/spsurvey/inst/doc/UserGuide.pdf |binary spsurvey-2.0/spsurvey/man/cat.analysis.Rd | 143 +- spsurvey-2.0/spsurvey/man/category.est.Rd | 315 ++--- spsurvey-2.0/spsurvey/man/cdf.decon.Rd | 79 - spsurvey-2.0/spsurvey/man/cdf.est.Rd | 364 +++--- spsurvey-2.0/spsurvey/man/cdf.plot.Rd |only spsurvey-2.0/spsurvey/man/cdf.test.Rd | 312 +++-- spsurvey-2.0/spsurvey/man/cont.analysis.Rd | 151 +- spsurvey-2.0/spsurvey/man/cont.cdfplot.Rd |only spsurvey-2.0/spsurvey/man/cont.cdftest.Rd |only spsurvey-2.0/spsurvey/man/grts.Rd | 21 spsurvey-2.0/spsurvey/man/grtsarea.Rd | 2 spsurvey-2.0/spsurvey/man/grtslin.Rd | 2 spsurvey-2.0/spsurvey/man/grtspts.Rd | 2 spsurvey-2.0/spsurvey/man/irs.Rd | 4 spsurvey-2.0/spsurvey/man/irsarea.Rd | 2 spsurvey-2.0/spsurvey/man/irslin.Rd | 2 spsurvey-2.0/spsurvey/man/marinus.Rd | 4 spsurvey-2.0/spsurvey/man/read.dbf.Rd | 4 spsurvey-2.0/spsurvey/man/read.sas.Rd |only spsurvey-2.0/spsurvey/man/read.shape.Rd | 2 spsurvey-2.0/spsurvey/man/relrisk.analysis.Rd |only spsurvey-2.0/spsurvey/man/relrisk.est.Rd |only spsurvey-2.0/spsurvey/man/spsurvey-internal.Rd | 119 - spsurvey-2.0/spsurvey/man/spsurvey.analysis.Rd |only spsurvey-2.0/spsurvey/man/total.est.Rd | 72 - spsurvey-2.0/spsurvey/spsurvey_2.0.zip |only spsurvey-2.0/spsurvey/src/dbfFileParser.c | 110 + spsurvey-2.0/spsurvey/src/grts.c | 19 spsurvey-2.0/spsurvey/src/grtsarea.c | 14 spsurvey-2.0/spsurvey/src/grtslin.c | 30 spsurvey-2.0/spsurvey/src/irslin.c | 8 spsurvey-2.0/spsurvey/src/shapeParser.c | 76 - 97 files changed, 7043 insertions(+), 5399 deletions(-)
More information about spsurvey at CRAN
posted at: 09:18 | path: /cran/updated | permanent link to this entry
Package sampling updated to version 2.0 with previous version 0.9 dated 2007-12-12
Author: Yves Tillé
Diff between sampling versions 0.9 dated 2007-12-12 and 2.0 dated 2008-06-20
More information about sampling at CRAN
Package epicalc updated to version 2.7.1.0 with previous version 2.7.0.4 dated 2008-06-15 Author: Virasakdi Chongsuvivatwong
Diff between epicalc versions 2.7.0.4 dated 2008-06-15 and 2.7.1.0 dated 2008-06-20
More information about epicalc at CRAN
Package dtw updated to version 1.9-1 with previous version 1.6-2 dated 2008-05-30 Author: Toni Giorgino
Diff between dtw versions 1.6-2 dated 2008-05-30 and 1.9-1 dated 2008-06-20
More information about dtw at CRAN
Package bnlearn updated to version 0.8 with previous version 0.7 dated 2008-03-26 Author: Marco Scutari
Diff between bnlearn versions 0.7 dated 2008-03-26 and 0.8 dated 2008-06-20
More information about bnlearn at CRAN
Package animation updated to version 1.0-1 with previous version 1.0-0 dated 2008-06-11 Author: Yihui Xie
Diff between animation versions 1.0-0 dated 2008-06-11 and 1.0-1 dated 2008-06-20
More information about animation at CRAN
Package RUnit updated to version 0.4.19 with previous version 0.4.17 dated 2007-05-22 Author: Matthias Burger
Diff between RUnit versions 0.4.17 dated 2007-05-22 and 0.4.19 dated 2008-06-20
More information about RUnit at CRAN
Package ISwR updated to version 2.0-2 with previous version 2.0-1 dated 2008-04-24 Author: Peter Dalgaard
Diff between ISwR versions 2.0-1 dated 2008-04-24 and 2.0-2 dated 2008-06-20
More information about ISwR at CRAN
New package repolr with initial version 1.0
More information about repolr at CRAN
Package monomvn updated to version 1.3-1 with previous version 1.3 dated 2008-06-10 Author: Robert B. Gramacy
Diff between monomvn versions 1.3 dated 2008-06-10 and 1.3-1 dated 2008-06-20
More information about monomvn at CRAN
Package fSeries updated to version 260.73 with previous version 260.72 dated 2007-10-08 Author: Diethelm Wuertz and many others, see the SOURCE file
Diff between fSeries versions 260.72 dated 2007-10-08 and 260.73 dated 2008-06-20
More information about fSeries at CRAN
Package fExtremes updated to version 260.73 with previous version 260.72 dated 2007-10-08 Author: Diethelm Wuertz and many others, see the SOURCE file
Diff between fExtremes versions 260.72 dated 2007-10-08 and 260.73 dated 2008-06-20
More information about fExtremes at CRAN
Package FunNet updated to version 1.00-2 with previous version 1.00-1 dated 2008-05-05 Author: Corneliu Henegar
Diff between FunNet versions 1.00-1 dated 2008-05-05 and 1.00-2 dated 2008-06-20
More information about FunNet at CRAN
Package FunCluster updated to version 1.09 with previous version 1.08 dated 2008-04-04 Author: Corneliu Henegar
Diff between FunCluster versions 1.08 dated 2008-04-04 and 1.09 dated 2008-06-20
More information about FunCluster at CRAN
Title: Survey Sampling
Description: Functions for drawing and calibrating samples.
sampling-0.9/sampling/R/UPpivotal.R |only
sampling-2.0/sampling/DESCRIPTION | 8
sampling-2.0/sampling/R/HTstrata.r | 28 +
sampling-2.0/sampling/R/UPbrewer.R | 3
sampling-2.0/sampling/R/UPmaxentropy.R | 2
sampling-2.0/sampling/R/UPopips.r | 2
sampling-2.0/sampling/R/UPpivotal.r |only
sampling-2.0/sampling/R/UPpoisson.R | 12
sampling-2.0/sampling/R/UPrandompivotal.R | 2
sampling-2.0/sampling/R/UPsampford.R | 3
sampling-2.0/sampling/R/UPsystematic.R | 5
sampling-2.0/sampling/R/UPsystematicpi2.R | 4
sampling-2.0/sampling/R/UPtille.R | 3
sampling-2.0/sampling/R/UPtillepi2.R | 3
sampling-2.0/sampling/R/postest.r |only
sampling-2.0/sampling/R/poststrata.r |only
sampling-2.0/sampling/R/ratioest.r |only
sampling-2.0/sampling/R/ratioest_strata.r |only
sampling-2.0/sampling/R/regest.r |only
sampling-2.0/sampling/R/regest_strata.r |only
sampling-2.0/sampling/R/rmodel.r |only
sampling-2.0/sampling/inst/doc/Rplots.pdf |only
sampling-2.0/sampling/inst/doc/Rplots.ps | 386 ++++++++++++-------------
sampling-2.0/sampling/inst/doc/UPexamples.log | 56 +--
sampling-2.0/sampling/inst/doc/UPexamples.pdf |binary
sampling-2.0/sampling/inst/doc/calibration.log | 56 +--
sampling-2.0/sampling/inst/doc/calibration.pdf |binary
sampling-2.0/sampling/man/HTstrata.Rd | 14
sampling-2.0/sampling/man/UPpoisson.Rd | 5
sampling-2.0/sampling/man/cluster.Rd | 3
sampling-2.0/sampling/man/getdata.Rd | 3
sampling-2.0/sampling/man/mstage.Rd | 13
sampling-2.0/sampling/man/postest.Rd |only
sampling-2.0/sampling/man/poststrata.Rd |only
sampling-2.0/sampling/man/ratioest.Rd |only
sampling-2.0/sampling/man/ratioest_strata.Rd |only
sampling-2.0/sampling/man/regest.Rd |only
sampling-2.0/sampling/man/regest_strata.Rd |only
sampling-2.0/sampling/man/rhg.Rd | 2
sampling-2.0/sampling/man/rhg_strata.Rd | 5
sampling-2.0/sampling/man/rmodel.Rd |only
sampling-2.0/sampling/man/strata.Rd | 16 -
42 files changed, 334 insertions(+), 300 deletions(-)
posted at: 09:18 | path: /cran/updated | permanent link to this entry
Title: Epidemiological calculator
Description: Functions making R easy for epidemiological calculation.
DESCRIPTION | 6 +++---
R/epicalc.R | 39 +++++++++++++++++++++++++++------------
man/recode.rd | 29 +++++++++++++++++++++++++----
3 files changed, 55 insertions(+), 19 deletions(-)
posted at: 09:18 | path: /cran/updated | permanent link to this entry
Title: Dynamic Time Warping algorithms
Description: Comprehensive implementation of Dynamic Time Warping
algorithms in R. DTW finds the optimal (least cumulative distance)
mapping between two time series. All common DTW variants are
covered, including local and global constraints, arbitrary timeseries
lenghts, distance definitions, MVM, etc. Package computes cumulative
distance, warping functions, plots, normalizations, etc.
DESCRIPTION | 14 -
R/backtrack.R | 4
R/dtw.R | 63 ++++--
R/globalCostMatrix.R | 4
R/mvm.R |only
R/plot.dtw.R | 99 +++++++--
R/stepPattern.R | 440 ++++++++++++++++++++++++++++++++++++++++++-
inst/ChangeLog | 19 +
inst/TODO | 27 ++
inst/dtw.bib | 51 ++++
man/dtw-package.Rd | 3
man/dtw.Rd | 40 ++-
man/dtwPlot.Rd | 24 --
man/dtwPlotThreeWay.Rd | 46 ++--
man/dtwPlotTwoWay.Rd | 42 ++--
man/dtwWindowingFunctions.Rd | 8
man/mvm.Rd |only
man/stepPattern.Rd | 245 ++++++++++++++---------
18 files changed, 902 insertions(+), 227 deletions(-)
posted at: 09:18 | path: /cran/updated | permanent link to this entry
Title: Bayesian network structure learning
Description: Bayesian network structure learning
via constraint-based (also known as 'conditional
independence') and score-based algorithms.
This package implements the Grow-Shrink (GS)
algorithm, the Incremental Association (IAMB)
algorithm, the Interleaved-IAMB (Inter-IAMB)
algorithm, the Fast-IAMB (Fast-IAMB) algorithm
and the Hill-Climbing (HC) greedy search
algorithm for both discrete and gaussian networks,
along with many score functions and conditional
independence tests.
Some utility functions (model comparison and
manipulation, random data generation, arc
orientation testing) are also included.
DESCRIPTION | 6
NAMESPACE | 1
R/arc.strength.R |only
R/backend-indep.R | 4
R/backend-score.R | 442 +++++++++++++++++++++++++++----
R/choose.direction.R | 35 --
R/frontend.R | 347 +++++++++---------------
R/graph-generation.R | 10
R/grow-shrink.R | 1
R/hill-climbing.R | 632 +++++++++------------------------------------
R/methods.R | 31 +-
R/scores.R | 98 +++---
R/simulation.R | 55 +--
R/test.R | 75 ++++-
R/utils-amat.R | 2
R/utils-graph.R | 87 ++++++
R/utils-sanitization.R | 194 ++++++++++++-
R/utils-tests.R | 18 -
data/asia.rda |only
man/00.bnlearn-package.Rd | 28 +
man/10.gs.Rd | 4
man/11.iamb.Rd | 4
man/12.fast.iamb.Rd | 4
man/13.inter.iamb.Rd | 4
man/14.hc.Rd | 22 -
man/20.mb.Rd | 14
man/21.arcops.Rd | 2
man/22.modelstring.Rd | 10
man/23.compare.Rd | 4
man/24.graphgen.Rd | 2
man/25.ordering.Rd | 2
man/30.score.Rd | 23 -
man/31.choose.direction.Rd | 5
man/32.arc.strength.Rd |only
man/40.rbn.Rd | 5
man/50.plot.bn.Rd | 2
man/A0.learning-test.Rd | 15 -
man/A1.gaussian-test.Rd | 15 -
man/A2.asia.Rd |only
man/B0.bn.class.Rd | 24 +
man/C0.snow.Rd | 7
man/C1.deal.Rd |only
src/hc.cache.lookup.c |only
src/is.dag.c |only
src/is.row.equal.c | 8
45 files changed, 1217 insertions(+), 1025 deletions(-)
posted at: 09:18 | path: /cran/updated | permanent link to this entry
Title: Demonstrate Animations in Statistics
Description: This package consists of various functions for animations in
statistics, covering many areas such as probability theory, mathematical
statistics, multivariate statistics, nonparametric statistics, sampling
survey, linear models, time series, computational statistics, data mining
and machine learning. These functions might be of help in teaching
statistics and data analysis.
DESCRIPTION | 15 ++++++++++-----
R/knn.ani.R | 2 +-
R/saveMovie.R | 4 +++-
R/saveSWF.r |only
demo |only
inst/NEWS | 24 ++++++++++++++++++++++++
man/animation-package.Rd | 41 +++++++++++++++++++++++++++++++++--------
man/brownian.motion.Rd | 2 +-
man/clt.ani.Rd | 2 +-
man/conf.int.Rd | 1 +
man/cv.ani.Rd | 2 +-
man/flip.coin.Rd | 2 +-
man/grad.desc.Rd | 3 +--
man/kfcv.Rd | 1 -
man/kmeans.ani.Rd | 3 +--
man/lln.ani.Rd | 2 +-
man/mwar.ani.Rd | 2 +-
man/newton.method.Rd | 2 +-
man/sample.cluster.Rd | 2 +-
man/sample.simple.Rd | 2 +-
man/sample.strat.Rd | 2 +-
man/sample.system.Rd | 2 +-
man/saveMovie.Rd | 23 +++++++++++++----------
man/saveSWF.Rd |only
man/tidy.source.Rd | 2 +-
man/vi.grid.illusion.Rd | 4 ++--
man/vi.lilac.chaser.Rd | 4 ++--
27 files changed, 103 insertions(+), 46 deletions(-)
posted at: 09:18 | path: /cran/updated | permanent link to this entry
Title: R Unit test framework
Description: R functions implementing a standard Unit Testing framework, with additional code inspection and report generation tools
RUnit-0.4.17/RUnit/inst/doc/design |only
RUnit-0.4.19/RUnit/ChangeLog | 535 +++++++++++++++++
RUnit-0.4.19/RUnit/DESCRIPTION | 8
RUnit-0.4.19/RUnit/R/00Init.r | 6
RUnit-0.4.19/RUnit/R/checkFuncs.r | 26
RUnit-0.4.19/RUnit/R/exportHTML.r | 14
RUnit-0.4.19/RUnit/R/html.r | 6
RUnit-0.4.19/RUnit/R/htmlProtocol.r | 45 -
RUnit-0.4.19/RUnit/R/runit.r | 11
RUnit-0.4.19/RUnit/R/testLogger.r | 31
RUnit-0.4.19/RUnit/R/textProtocol.r | 10
RUnit-0.4.19/RUnit/inst/doc/RUnit.dvi |binary
RUnit-0.4.19/RUnit/inst/doc/RUnit.pdf |binary
RUnit-0.4.19/RUnit/inst/doc/RUnit.ps | 242 ++-----
RUnit-0.4.19/RUnit/inst/doc/RUnit.tex | 2
RUnit-0.4.19/RUnit/inst/share/R/compareRUnitTestData.r | 27
RUnit-0.4.19/RUnit/man/runit.Rd | 6
RUnit-0.4.19/RUnit/man/textProtocol.Rd | 36 -
RUnit-0.4.19/RUnit/tests/runitInspect.r | 29
RUnit-0.4.19/RUnit/tests/runitRUnit.r | 50 +
20 files changed, 812 insertions(+), 272 deletions(-)
posted at: 09:18 | path: /cran/updated | permanent link to this entry
Title: Introductory Statistics with R
Description: Data sets and scripts for text examples and exercises in
P. Dalgaard (2008), `Introductory Statistics with R', 2nd ed., Springer Verlag, ISBN 978-0387790534.
DESCRIPTION | 8 ++++----
1 file changed, 4 insertions(+), 4 deletions(-)
posted at: 09:18 | path: /cran/updated | permanent link to this entry
Package: repolr
Type: Package
Title: Repeated measures proportional odds logistic regression
Version: 1.0
Date: 2008-05-01
Author: Nick Parsons
Maintainer: Nick Parsons
Depends: gee
Description: Package fits regression model to repeated ordinal response variables using generalized estimating equations.
License: GPL
URL: http://www.warwick.ac.uk/go/repolr
Packaged: Thu Jun 19 15:20:22 2008; nick
posted at: 05:18 | path: /cran/new | permanent link to this entry
Title: Estimation for multivariate normal data with monotone missingness
Description: Estimation of multivariate normal data of arbitrary dimension
where the pattern of missing data is monotone. Through the use of
parsimonious/shrinkage regressions (plsr, pcr, lasso, ridge, etc.),
where standard regressions fail, the package can handle an
(almost) arbitrary amount of missing data. The current version
supports maximum likelihood inference and an alpha implementation
of a Bayesian version employing a Bayesian lasso. A fully
functional standalone (beta) interface to the Bayesian lasso
(from Park & Casella) with model selection is also provided
monomvn-1.3-1/monomvn/ChangeLog | 25 +
monomvn-1.3-1/monomvn/DESCRIPTION | 6
monomvn-1.3-1/monomvn/R/addy.R | 3
monomvn-1.3-1/monomvn/R/blasso.R | 24 +
monomvn-1.3-1/monomvn/R/blasso.s3.R | 8
monomvn-1.3-1/monomvn/R/bmonomvn.R | 155 ++++++--
monomvn-1.3-1/monomvn/R/monomvn.R | 27 -
monomvn-1.3-1/monomvn/R/regress.R | 3
monomvn-1.3-1/monomvn/R/regress.lars.R | 74 +++-
monomvn-1.3-1/monomvn/R/regress.ridge.R | 2
monomvn-1.3-1/monomvn/R/util.R |only
monomvn-1.3-1/monomvn/man/blasso.Rd | 12
monomvn-1.3-1/monomvn/man/blasso.s3.Rd | 4
monomvn-1.3-1/monomvn/man/bmonomvn.Rd | 66 ++-
monomvn-1.3-1/monomvn/man/monomvn-internal.Rd | 10
monomvn-1.3-1/monomvn/man/monomvn-package.Rd | 2
monomvn-1.3-1/monomvn/man/monomvn.Rd | 36 +-
monomvn-1.3-1/monomvn/man/monomvn.s3.Rd | 2
monomvn-1.3-1/monomvn/man/posdef.approx.Rd | 4
monomvn-1.3-1/monomvn/man/regress.Rd | 5
monomvn-1.3-1/monomvn/src/blasso.cc | 234 +++++++++----
monomvn-1.3-1/monomvn/src/blasso.h | 34 +
monomvn-1.3-1/monomvn/src/bmonomvn.cc | 459 +++++++++++++++++++-------
monomvn-1.3-1/monomvn/src/bmonomvn.h | 33 +
monomvn-1.3-1/monomvn/src/linalg.c | 2
monomvn-1.3-1/monomvn/src/matrix.c | 17
monomvn-1.3-1/monomvn/src/matrix.h | 1
monomvn-1.3/monomvn/R/gamma.R |only
28 files changed, 935 insertions(+), 313 deletions(-)
posted at: 05:18 | path: /cran/updated | permanent link to this entry
Title: Rmetrics - Financial Time Series Objects
Description: Environment for teaching "Financial Engineering and Computational Finance"
DESCRIPTION | 8 -
R/aggregate.R | 60 +++++------
R/apply.R | 74 ++++++-------
R/timeSeries.R | 238 ++++++++++++++++++++++-----------------------
inst/unitTests/runitOmit.R | 24 ++--
man/monthly.Rd | 2
man/order.Rd | 2
man/plot.Rd | 2
man/print.Rd | 2
man/summary.Rd | 2
10 files changed, 207 insertions(+), 207 deletions(-)
posted at: 05:18 | path: /cran/updated | permanent link to this entry
Title: Rmetrics - Extreme Financial Market Data
Description: Environment for teaching "Financial Engineering and Computational Finance"
DESCRIPTION | 8 ++++----
1 file changed, 4 insertions(+), 4 deletions(-)
posted at: 05:18 | path: /cran/updated | permanent link to this entry
Title: Integrative Functional Analysis of Transcriptional Networks
Description: FunNet is an integrative tool for analyzing gene co-expression networks built from
microarray expression data. The analytic model implemented in this library
involves two abstraction layers: transcriptional and functional (biological roles).
A functional profiling technique using Gene Ontology & KEGG annotations is
applied to extract a list of relevant biological themes from
microarray expression profiling data. Afterwards multiple-instance
representations are built to relate significant themes to their
transcriptional instances (i.e. the two layers of the model). An adapted
non-linear dynamical system model is used to quantify the proximity of relevant
genomic themes based on the similarity of the expression profiles of their gene instances.
Eventually an unsupervised multiple-instance clustering procedure, relying on
the two abstraction layers, is used to identify the structure of the co-expression
network composed from modules of functionally related transcripts. Functional
and transcriptional maps of the co-expression network are provided separately
together with detailed information on the network centrality of related transcripts
and genomic themes.
DESCRIPTION | 12 ++++----
R/FunNet.R | 2 -
R/sysdata.rda |binary
man/Annotations.Rd | 40 +++++++++++++++++------------
man/FunNet.R-package.Rd | 66 ++++++++++++++++++++++++------------------------
man/FunNet.Rd | 35 +++++++++++++------------
6 files changed, 83 insertions(+), 72 deletions(-)
posted at: 05:18 | path: /cran/updated | permanent link to this entry
Title: Functional Profiling of Microarray Expression Data
Description: FunCluster performs a functional analysis of microarray expression
data based on Gene Ontology & KEGG functional annotations. From
expression data and functional annotations FunCluster builds classes
of putatively co-regulated biological processes through a specially
designed clustering procedure.
DESCRIPTION | 6 +++---
R/FunCluster.R | 2 +-
R/sysdata.rda |binary
copying | 2 +-
man/FunCluster.R-package.Rd | 2 +-
man/FunCluster.Rd | 2 +-
6 files changed, 7 insertions(+), 7 deletions(-)
posted at: 05:18 | path: /cran/updated | permanent link to this entry