Package: qlspack
Version: 1.0-1
Date: 2007-07-13
Title: Quasi Least Square Package
Author: Jichun Xie
Maintainer: Jichun Xie
Depends: R (>= 2.4.1), geepack (>= 1.0-12)
Description: QLS is a two-stage computational approach for estimation of the correlation parameters within the framework of GEE. It helps solving parameters in mean, scale, and correlation structures for longitudinal data.
License: GPL (>= 2)
URL: http://www.cceb.upenn.edu/~sratclif/QLSproject.html
Packaged: Fri Jun 20 23:32:36 2008; jxie
More information about qlspack at CRAN
posted at: 13:39 | path: /cran/new | permanent link to this entry
New package bigmemory with initial version 2.1
More information about bigmemory at CRAN
New package SASPECT with initial version 0.1-1
More information about SASPECT at CRAN
New package MDD with initial version 0.5
More information about MDD at CRAN
Package spatstat updated to version 1.13-3 with previous version 1.13-2 dated 2008-05-16 Author: Adrian Baddeley
Diff between spatstat versions 1.13-2 dated 2008-05-16 and 1.13-3 dated 2008-06-23
More information about spatstat at CRAN
Package scuba updated to version 1.2-1 with previous version 1.1-9 dated 2007-10-27 Author: Adrian Baddeley
Diff between scuba versions 1.1-9 dated 2007-10-27 and 1.2-1 dated 2008-06-23
More information about scuba at CRAN
Package relax updated to version 1.083 with previous version 1.081 dated 2007-10-08 Author: Hans Peter Wolf
Diff between relax versions 1.081 dated 2007-10-08 and 1.083 dated 2008-06-23
More information about relax at CRAN
Package prettyR updated to version 1.3-2 with previous version 1.3-1 dated 2008-06-16 Author: Jim Lemon
Diff between prettyR versions 1.3-1 dated 2008-06-16 and 1.3-2 dated 2008-06-23
More information about prettyR at CRAN
Package playwith updated to version 0.8-56 with previous version 0.8-55 dated 2008-06-18 Author: Felix Andrews
Diff between playwith versions 0.8-55 dated 2008-06-18 and 0.8-56 dated 2008-06-23
More information about playwith at CRAN
Package lme4 updated to version 0.999375-17 with previous version 0.99875-9 dated 2007-10-14 Author: Douglas Bates
Diff between lme4 versions 0.99875-9 dated 2007-10-14 and 0.999375-17 dated 2008-06-23
More information about lme4 at CRAN
Package laercio updated to version 0.9-2 with previous version 0.9-1 dated 2008-06-11 Author: Laercio Junio da Silva
Diff between laercio versions 0.9-1 dated 2008-06-11 and 0.9-2 dated 2008-06-23
More information about laercio at CRAN
Package Rcplex updated to version 0.1-3 with previous version 0.1-2 dated 2008-06-09 Author: Hector Corrada Bravo
Diff between Rcplex versions 0.1-2 dated 2008-06-09 and 0.1-3 dated 2008-06-23
More information about Rcplex at CRAN
Package RSEIS updated to version 1.1-1 with previous version 1.1-0 dated 2008-04-27 Author: Jonathan M. Lees
Diff between RSEIS versions 1.1-0 dated 2008-04-27 and 1.1-1 dated 2008-06-23
More information about RSEIS at CRAN
Package HiddenMarkov updated to version 1.2-5 with previous version 1.2-4 dated 2008-02-18 Author: David Harte
Diff between HiddenMarkov versions 1.2-4 dated 2008-02-18 and 1.2-5 dated 2008-06-23
More information about HiddenMarkov at CRAN
Package: bigmemory
Type: Package
Title: Manage massive matrices in R using C++, with UNIX support for shared memory
Version: 2.1
Date: 2008-06-22
Author: Michael J. Kane and John W. Emerson
Maintainer: John W. Emerson
Depends: methods, stats, utils
Suggests: biglm, nws
Description: Use C++ to create, store, access, and manipulate massive matrices. Under UNIX, it also supports use of shared memory.
License: LGPL-3
Packaged: Mon Jun 23 08:35:58 2008; jay
posted at: 13:39 | path: /cran/new | permanent link to this entry
Package: SASPECT
Version: 0.1-1
Date: 2008-06-02
Title: Significant AnalysiS of PEptide CounTs.
Author: Pei Wang
Maintainer: Pei Wang
Description: A statistical method for significant analysis of comparative proteomics based on LC-MS/MS Experiments
License: GPL version 2 or newer
Packaged: Sun Jun 22 14:45:39 2008; pwang
posted at: 13:39 | path: /cran/new | permanent link to this entry
Package: MDD
Type: Package
Title: Minimum Detectable Difference Calculations
Version: 0.5
Date: 2008-06-20
Author: Don Barkauskas
Maintainer: Don Barkauskas
Depends: partitions,tcltk
Description: Calculates minimum detectable difference for several continuous and binary endpoints. Also contains programs to compare the MDD to the clinically significant difference for most of the same tests.
License: GPL-2
Packaged: Fri Jun 20 22:03:59 2008; Don
posted at: 13:39 | path: /cran/new | permanent link to this entry
Title: Spatial Point Pattern analysis, model-fitting, simulation, tests
Description: A package for analysing spatial data,
mainly Spatial Point Patterns, including multitype/marked points
and spatial covariates, in any two-dimensional spatial region.
Contains functions for plotting spatial data,
exploratory data analysis, model-fitting, simulation,
spatial sampling, model diagnostics,
and formal inference. Data types include point patterns,
line segment patterns, spatial windows, and
pixel images. Point process models can be
fitted to point pattern data. Cluster type models are fitted
by the method of minimum contrast. Very general Gibbs point
process models can be fitted to point pattern data
using a function ppm similar to lm or glm. Models may
include dependence on covariates, interpoint interaction
and dependence on marks. Fitted models can be simulated automatically.
Also provides facilities for formal inference (such as chi-squared
tests) and model diagnostics (including simulation
envelopes, residuals, residual plots and Q-Q plots).
DESCRIPTION | 6 +-
INDEX | 1
R/Kinhom.S | 40 +-----------------
R/Kmeasure.R | 6 ++
R/Kmulti.S | 23 +++++++---
R/Kmulti.inhom.R | 34 ++++++++--------
R/blur.R |only
R/closepairs.R | 106 +++++++++++++++++++++++++++++++++-----------------
R/rescue.rectangle.R | 5 +-
R/window.S | 14 +++++-
man/00spatstat.Rd | 1
man/Kcross.Rd | 5 +-
man/Kcross.inhom.Rd | 4 +
man/Kdot.Rd | 7 ++-
man/Kdot.inhom.Rd | 12 +++--
man/Kinhom.Rd | 9 ++--
man/blur.Rd |only
man/internal.Rd | 4 +
man/marktable.Rd | 4 -
src/closepair.c | 8 +--
tests/gcc323.R |only
tests/marcelino.R |only
tests/marcelinodata.R |only
23 files changed, 168 insertions(+), 121 deletions(-)
posted at: 13:38 | path: /cran/updated | permanent link to this entry
Title: Scuba diving calculations and decompression models
Description: dive profiles, decompression models and gas calculations
for scuba diving
scuba-1.1-9/scuba/R/scuba.R |only
scuba-1.1-9/scuba/data/Halftimes.R |only
scuba-1.1-9/scuba/data/Mvalues.R |only
scuba-1.1-9/scuba/man/Halftimes.Rd |only
scuba-1.1-9/scuba/man/Mvalues.Rd |only
scuba-1.2-1/scuba/DESCRIPTION | 10 -
scuba-1.2-1/scuba/INDEX | 17 +-
scuba-1.2-1/scuba/R/dive.R |only
scuba-1.2-1/scuba/R/gas.R |only
scuba-1.2-1/scuba/R/haldane.R |only
scuba-1.2-1/scuba/R/hm.R |only
scuba-1.2-1/scuba/R/oxtox.R |only
scuba-1.2-1/scuba/data/Bookspan.R |only
scuba-1.2-1/scuba/man/00scuba.Rd | 257 ++++++++++++++++++++++++-------
scuba-1.2-1/scuba/man/Bookspan.Rd |only
scuba-1.2-1/scuba/man/Workman65.Rd | 7
scuba-1.2-1/scuba/man/chop.dive.Rd |only
scuba-1.2-1/scuba/man/depths.dive.Rd |only
scuba-1.2-1/scuba/man/dive.Rd | 86 ++++++++--
scuba-1.2-1/scuba/man/durations.dive.Rd |only
scuba-1.2-1/scuba/man/haldane.Rd | 142 +++++++++++++----
scuba-1.2-1/scuba/man/hm.Rd |only
scuba-1.2-1/scuba/man/internal.Rd | 30 ++-
scuba-1.2-1/scuba/man/is.nitrox.Rd |only
scuba-1.2-1/scuba/man/mod.Rd | 16 +
scuba-1.2-1/scuba/man/ndl.Rd |only
scuba-1.2-1/scuba/man/nitrox.Rd | 14 +
scuba-1.2-1/scuba/man/oxtox.Rd | 16 +
scuba-1.2-1/scuba/man/param.Rd |only
scuba-1.2-1/scuba/man/pickmodel.Rd |only
scuba-1.2-1/scuba/man/saturated.state.Rd |only
scuba-1.2-1/scuba/man/showstates.Rd | 19 --
scuba-1.2-1/scuba/man/tanklist.Rd |only
scuba-1.2-1/scuba/man/times.dive.Rd |only
scuba-1.2-1/scuba/man/trimix.Rd |only
35 files changed, 477 insertions(+), 137 deletions(-)
posted at: 13:38 | path: /cran/updated | permanent link to this entry
Title: relax -- R Editor for Literate Analysis and lateX
Description: package relax contains some functions for report
writing, presentation, and programming: relax(), tangleR(),
weaveR(), slider(). "relax" is written in R and Tcl/Tk.
relax creates a new window (top level Tcl/Tk widget) that consists
of two text fields and some buttons and menus.
Text (chunks) and code (chunks) are inserted in the upper text field (report field).
Code chunks are evaluated by clicking on EvalRCode.
Results are shown in the lower text field (output field) and
will be transfered to the report field by pressing on Insert.
In this way you get correct reports. These reports can be
loaded again in cause of presentation, modification and result checking.
tangleR() and weaveR() implement a plain kind of tangling
and weaving. slider() is designed to define sliders for interactive
experiments in a simple way.
The syntax rules of code chunks and text chunks are defined by
the noweb system proposed by Norman Ramsey
(http://www.eecs.harvard.edu/~nr/noweb/intro.html).
For integrating jpeg graphics into the text field you need the
Tcl/Tk Img package of Jan Nijtmans
(see: http://members.chello.nl/~j.nijtmans/img.html or
http://tkimg.sourceforge.net/, the package is found on
http://sourceforge.net/projects/tkimg).
The license terms concerning the img package are found in
the source file of the package, see: relax/src/tkimg1.3.tar.gz.
The windows version of relax
contains the Tcl/Tk img package, so no further installations
have to be done.
relax-1.081/relax/inst/lib/img1.3 |only
relax-1.083/relax/DESCRIPTION | 29
relax-1.083/relax/R/relax.R | 965 ++++++++++++++++++++------
relax-1.083/relax/R/slider.R | 121 ++-
relax-1.083/relax/R/tangleR.R | 20
relax-1.083/relax/R/weaveR.R | 59 -
relax-1.083/relax/R/weaveRhtml.R | 24
relax-1.083/relax/inst/config/settings.init | 5
relax-1.083/relax/inst/config/settings.relax | 5
relax-1.083/relax/inst/lib/LaTeX-head.tex | 9
relax-1.083/relax/inst/src/relax.rev | 995 ++++++++++++++++++++-------
relax-1.083/relax/inst/src/tkimg1.3.tar.gz |only
relax-1.083/relax/inst/src/webR.rev | 96 +-
relax-1.083/relax/man/relax.Rd | 2
relax-1.083/relax/man/slider.Rd | 56 -
15 files changed, 1722 insertions(+), 664 deletions(-)
posted at: 13:38 | path: /cran/updated | permanent link to this entry
Title: Pretty descriptive stats.
Description: Functions for conventionally formatted descriptive stats, and
to format R output as HTML.
DESCRIPTION | 8 ++++----
R/describe.R | 7 +++++--
man/AddNav.Rd | 2 +-
man/HTMLgraph.Rd | 2 +-
man/R2html.Rd | 7 ++++++-
man/StartNav.Rd | 2 +-
man/createIndxFile.Rd | 2 +-
7 files changed, 19 insertions(+), 11 deletions(-)
posted at: 13:38 | path: /cran/updated | permanent link to this entry
Title: A GUI for interactive plots using GTK+
Description: A graphical user interface for viewing and interacting with R plots.
It tries to work out the structure of a plot, in order to interact with it.
The built-in features include: navigating the data space, identifying data points,
editing and annotating the plot, and saving to a file. New tools can be defined.
This package is based on RGtk2, and so requires the GTK+ libraries.
DESCRIPTION | 6 +--
R/playTools.R | 12 ++++---
R/playwith.R | 89 +++++++++++++++++++++++++-------------------------------
inst/NEWS | 8 +++++
man/playwith.Rd | 8 ++---
5 files changed, 63 insertions(+), 60 deletions(-)
posted at: 13:38 | path: /cran/updated | permanent link to this entry
Title: Linear mixed-effects models using S4 classes
Description: Fit linear and generalized linear mixed-effects models.
lme4-0.99875-9/lme4/R/gsummary.R |only
lme4-0.99875-9/lme4/R/pedigree.R |only
lme4-0.99875-9/lme4/inst/doc/auto |only
lme4-0.99875-9/lme4/man/gsummary.Rd |only
lme4-0.99875-9/lme4/man/hatTrace.Rd |only
lme4-0.99875-9/lme4/man/lmer-class.Rd |only
lme4-0.99875-9/lme4/man/nlmer-class.Rd |only
lme4-0.99875-9/lme4/man/nlmer.Rd |only
lme4-0.99875-9/lme4/man/pedigree-class.Rd |only
lme4-0.99875-9/lme4/man/pedigree.Rd |only
lme4-0.99875-9/lme4/man/pooledSD.Rd |only
lme4-0.99875-9/lme4/src/Wishart.c |only
lme4-0.99875-9/lme4/src/Wishart.h |only
lme4-0.99875-9/lme4/src/glmer.c |only
lme4-0.99875-9/lme4/src/glmer.h |only
lme4-0.99875-9/lme4/src/lme4_utils.c |only
lme4-0.99875-9/lme4/src/lme4_utils.h |only
lme4-0.99875-9/lme4/src/lmer2.c |only
lme4-0.99875-9/lme4/src/lmer2.h |only
lme4-0.99875-9/lme4/src/pedigree.c |only
lme4-0.99875-9/lme4/src/pedigree.h |only
lme4-0.99875-9/lme4/src/unused |only
lme4-0.999375-17/lme4/ChangeLog | 605 +++-
lme4-0.999375-17/lme4/DESCRIPTION | 17
lme4-0.999375-17/lme4/Done | 29
lme4-0.999375-17/lme4/NAMESPACE | 65
lme4-0.999375-17/lme4/NEWS |only
lme4-0.999375-17/lme4/R/AllClass.R | 255 -
lme4-0.999375-17/lme4/R/AllGeneric.R | 29
lme4-0.999375-17/lme4/R/carryOver.R | 150
lme4-0.999375-17/lme4/R/jml.R |only
lme4-0.999375-17/lme4/R/lmList.R | 48
lme4-0.999375-17/lme4/R/lmer.R | 2883 +++++++++----------
lme4-0.999375-17/lme4/R/mlirt.R | 136
lme4-0.999375-17/lme4/ToDo | 26
lme4-0.999375-17/lme4/data/Dyestuff.rda |only
lme4-0.999375-17/lme4/data/Dyestuff2.rda |only
lme4-0.999375-17/lme4/data/Pastes.rda |only
lme4-0.999375-17/lme4/data/Penicillin.rda |only
lme4-0.999375-17/lme4/inst/doc/Doxyfile | 132
lme4-0.999375-17/lme4/inst/doc/Implementation.Rnw | 216 -
lme4-0.999375-17/lme4/inst/doc/Implementation.pdf |binary
lme4-0.999375-17/lme4/inst/doc/Notes.Rnw |only
lme4-0.999375-17/lme4/inst/doc/Notes.pdf |only
lme4-0.999375-17/lme4/inst/doc/Theory.Rnw | 412 +-
lme4-0.999375-17/lme4/inst/doc/Theory.pdf |binary
lme4-0.999375-17/lme4/man/Dyestuff.Rd |only
lme4-0.999375-17/lme4/man/HPDinterval.Rd |only
lme4-0.999375-17/lme4/man/Pastes.Rd |only
lme4-0.999375-17/lme4/man/Penicillin.Rd |only
lme4-0.999375-17/lme4/man/VarCorr.Rd | 34
lme4-0.999375-17/lme4/man/cake.Rd | 6
lme4-0.999375-17/lme4/man/cbpp.Rd | 11
lme4-0.999375-17/lme4/man/fixef.Rd | 8
lme4-0.999375-17/lme4/man/lmList-class.Rd | 6
lme4-0.999375-17/lme4/man/lmList.Rd | 7
lme4-0.999375-17/lme4/man/lmer.Rd | 166 -
lme4-0.999375-17/lme4/man/mcmcsamp.Rd | 69
lme4-0.999375-17/lme4/man/mer-class.Rd |only
lme4-0.999375-17/lme4/man/merMCMC-class.Rd |only
lme4-0.999375-17/lme4/man/ranef.Rd | 40
lme4-0.999375-17/lme4/man/refit.Rd |only
lme4-0.999375-17/lme4/src/Syms.h | 45
lme4-0.999375-17/lme4/src/init.c | 144
lme4-0.999375-17/lme4/src/lmer.c | 3310 ++++++++++++----------
lme4-0.999375-17/lme4/src/lmer.h | 48
lme4-0.999375-17/lme4/tests/lmer.R | 110
lme4-0.999375-17/lme4/tests/lmer.Rout.save |only
lme4-0.999375-17/lme4/tests/nlmer.R |only
lme4-0.999375-17/lme4/tests/nlmer.Rout.save |only
70 files changed, 5068 insertions(+), 3939 deletions(-)
posted at: 13:38 | path: /cran/updated | permanent link to this entry
Title: Duncan test, Tukey test and Scott-Knott test.
Description: The package contains functions to compare and group means.
DESCRIPTION | 10 ++--
R/LScottKnott.R | 2
R/LScottKnott.aov.r | 103 +++++++++++++++++++++++++++++++------------------
R/ldata.R | 2
man/LDuncan.Rd | 7 +--
man/LScottKnott.Rd | 9 ++--
man/LTukey.Rd | 6 +-
man/laercio-package.Rd | 8 +--
man/ldata.Rd | 6 +-
9 files changed, 95 insertions(+), 58 deletions(-)
posted at: 13:38 | path: /cran/updated | permanent link to this entry
Title: R interface to CPLEX
Description: R interface to CPLEX solvers for linear, quadratic, and
(linear and quadratic) mixed integer programs. A working
installation of CPLEX is required for usage of the Rcplex
package. See the file "INSTALL" for details on how to install
the Rcplex package in Linux/Unix-like systems and Windows
systems. Support for sparse matrices is provided by an included
S3-style class "simple_triplet_matrix" and by objects from the
Matrix package class hierarchy.
DESCRIPTION | 13 ++++++-------
configure | 55 +++++++++++++++++++++----------------------------------
configure.win |only
inst/INSTALL | 33 ++++++++++++++++++++++++---------
inst/README | 3 +--
src/Makevars.win |only
src/Rcplex.c | 9 ++++++++-
7 files changed, 60 insertions(+), 53 deletions(-)
posted at: 13:38 | path: /cran/updated | permanent link to this entry
Title: Seismic Time Series Analysis Tools
Description: Multiple interactive codes to analyze seismic data, via, spectrum analysis, wavelet transforms, particle motion, hodograms.
DESCRIPTION | 4 +--
R/GLUE.GET.seis.R | 4 +--
R/PICK.GEN.R | 56 ++++++++++++++++++++++++++++++++++++++-------------
R/SPECT.drive.R | 3 +-
R/ZGET.sac.R |only
R/butfilt.R | 13 +++++++++++
R/choosfilt.R | 4 ++-
R/dogetsac.R |only
R/recdate.R | 10 +++++++--
R/screens.R | 3 +-
R/seisorder.R |only
R/wlet.drive.R | 4 ++-
inst/doc/hodo.pdf |binary
inst/doc/hodo.tex |only
inst/doc/rseis.pdf |binary
man/Comp1Dvel.Rd | 3 --
man/GAZI.Rd | 3 --
man/MTMplot.Rd | 5 ----
man/Mmorlet.Rd | 2 -
man/PLOT.TTCURVE.Rd | 2 -
man/PSTLTcurve.Rd | 6 +----
man/RSEIS-package.Rd | 2 -
man/ReadSet.Instr.Rd | 2 -
man/SEARCHPIX.Rd | 2 -
man/TTteles.Rd | 2 -
man/ZGET.sac.Rd |only
man/addtix.Rd | 3 --
man/brune.doom.Rd | 7 ++++--
man/brune.func.Rd | 6 ++++-
man/butfilt.Rd | 2 -
man/complex.hodo.Rd | 2 -
man/dogetsac.Rd |only
man/envelope.Rd | 2 -
man/getphaselag2.Rd | 2 -
man/gwpix2ypx.Rd | 1
man/hodogram.Rd | 2 -
man/idpoints.hodo.Rd | 3 --
man/peaks.Rd | 2 -
man/plotwlet.Rd | 2 -
man/prep1wig.Rd | 45 ++++++++++++++++++++++++++++++++++++++++
man/prepSEIS.Rd | 56 ++++++++++++++++++++++++++++++++++++++++++++++++++-
man/recdate.Rd | 11 +++++++++-
man/seisorder.Rd |only
man/selAPX.Rd | 2 -
man/setwelch.Rd | 3 --
man/wlet.do.Rd | 2 -
src/get_sacNhead.c |only
47 files changed, 216 insertions(+), 67 deletions(-)
posted at: 13:38 | path: /cran/updated | permanent link to this entry
Title: Hidden Markov Models
Description: Contains functions for the analysis of Discrete Time Hidden Markov Models, Markov Modulated GLMs and the Markov Modulated Poisson Process. It includes functions for simulation, parameter estimation, and the Viterbi algorithm. See the topic "HiddenMarkov" for an introduction to the package, and "Changes" for a list of recent changes. The algorithms are based of those of Walter Zucchini.
HiddenMarkov-1.2-4/HiddenMarkov/man/Overview.Rd |only
HiddenMarkov-1.2-4/HiddenMarkov/man/changes.Rd |only
HiddenMarkov-1.2-5/HiddenMarkov/DESCRIPTION | 8 ++++----
HiddenMarkov-1.2-5/HiddenMarkov/R/dthmm.R | 2 +-
HiddenMarkov-1.2-5/HiddenMarkov/man/Changes.Rd |only
HiddenMarkov-1.2-5/HiddenMarkov/man/HiddenMarkov.Rd |only
HiddenMarkov-1.2-5/HiddenMarkov/man/neglogLik.Rd | 2 +-
HiddenMarkov-1.2-5/HiddenMarkov/man/simulate.Rd | 2 +-
8 files changed, 7 insertions(+), 7 deletions(-)
posted at: 13:38 | path: /cran/updated | permanent link to this entry