CRANberries

Mon, 23 Jun 2008

New package qlspack with initial version 1.0-1
Package: qlspack
Version: 1.0-1
Date: 2007-07-13
Title: Quasi Least Square Package
Author: Jichun Xie , Justine Shults
Maintainer: Jichun Xie
Depends: R (>= 2.4.1), geepack (>= 1.0-12)
Description: QLS is a two-stage computational approach for estimation of the correlation parameters within the framework of GEE. It helps solving parameters in mean, scale, and correlation structures for longitudinal data.
License: GPL (>= 2)
URL: http://www.cceb.upenn.edu/~sratclif/QLSproject.html
Packaged: Fri Jun 20 23:32:36 2008; jxie

More information about qlspack at CRAN

posted at: 13:39 | path: /cran/new | permanent link to this entry

New package bigmemory with initial version 2.1
Package: bigmemory
Type: Package
Title: Manage massive matrices in R using C++, with UNIX support for shared memory
Version: 2.1
Date: 2008-06-22
Author: Michael J. Kane and John W. Emerson
Maintainer: John W. Emerson
Depends: methods, stats, utils
Suggests: biglm, nws
Description: Use C++ to create, store, access, and manipulate massive matrices. Under UNIX, it also supports use of shared memory.
License: LGPL-3
Packaged: Mon Jun 23 08:35:58 2008; jay

More information about bigmemory at CRAN

posted at: 13:39 | path: /cran/new | permanent link to this entry

New package SASPECT with initial version 0.1-1
Package: SASPECT
Version: 0.1-1
Date: 2008-06-02
Title: Significant AnalysiS of PEptide CounTs.
Author: Pei Wang , Yan Liu
Maintainer: Pei Wang
Description: A statistical method for significant analysis of comparative proteomics based on LC-MS/MS Experiments
License: GPL version 2 or newer
Packaged: Sun Jun 22 14:45:39 2008; pwang

More information about SASPECT at CRAN

posted at: 13:39 | path: /cran/new | permanent link to this entry

New package MDD with initial version 0.5
Package: MDD
Type: Package
Title: Minimum Detectable Difference Calculations
Version: 0.5
Date: 2008-06-20
Author: Don Barkauskas
Maintainer: Don Barkauskas
Depends: partitions,tcltk
Description: Calculates minimum detectable difference for several continuous and binary endpoints. Also contains programs to compare the MDD to the clinically significant difference for most of the same tests.
License: GPL-2
Packaged: Fri Jun 20 22:03:59 2008; Don

More information about MDD at CRAN

posted at: 13:39 | path: /cran/new | permanent link to this entry

Package spatstat updated to version 1.13-3 with previous version 1.13-2 dated 2008-05-16

Author: Adrian Baddeley and Rolf Turner , with substantial contributions of code by Marie-Colette van Lieshout, Rasmus Waagepetersen, Kasper Klitgaard Berthelsen and Dominic Schuhmacher. Additional contributions by C. Beale, B. Biggerstaff, R. Bivand, F. Bonneu, J.B. Chen, Y.C. Chin, M. de la Cruz, P.J. Diggle, S. Eglen, A. Gault, M. Genton, P. Grabarnik, C. Graf, J. Franklin, U. Hahn, M. Hering, M.B. Hansen, M. Hazelton, J. Heikkinen, K. Hornik, R. Ihaka, R. John-Chandran, D. Johnson, J. Laake, J. Mateu, P. McCullagh, X.C. Mi, J. Moller, L.S. Nielsen, E. Parilov, J. Picka, M. Reiter, B.D. Ripley, B. Rowlingson, J. Rudge, A. Sarkka, K. Schladitz, B.T. Scott, I.-M. Sintorn, M. Spiess, M. Stevenson, P. Surovy, B. Turlach, A. van Burgel, H. Wang and S. Wong.
Title: Spatial Point Pattern analysis, model-fitting, simulation, tests
Description: A package for analysing spatial data, mainly Spatial Point Patterns, including multitype/marked points and spatial covariates, in any two-dimensional spatial region. Contains functions for plotting spatial data, exploratory data analysis, model-fitting, simulation, spatial sampling, model diagnostics, and formal inference. Data types include point patterns, line segment patterns, spatial windows, and pixel images. Point process models can be fitted to point pattern data. Cluster type models are fitted by the method of minimum contrast. Very general Gibbs point process models can be fitted to point pattern data using a function ppm similar to lm or glm. Models may include dependence on covariates, interpoint interaction and dependence on marks. Fitted models can be simulated automatically. Also provides facilities for formal inference (such as chi-squared tests) and model diagnostics (including simulation envelopes, residuals, residual plots and Q-Q plots).

Diff between spatstat versions 1.13-2 dated 2008-05-16 and 1.13-3 dated 2008-06-23

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 23 files changed, 168 insertions(+), 121 deletions(-)

More information about spatstat at CRAN

posted at: 13:38 | path: /cran/updated | permanent link to this entry

Package scuba updated to version 1.2-1 with previous version 1.1-9 dated 2007-10-27

Author: Adrian Baddeley with contributions from Vittorio Broglio
Title: Scuba diving calculations and decompression models
Description: dive profiles, decompression models and gas calculations for scuba diving

Diff between scuba versions 1.1-9 dated 2007-10-27 and 1.2-1 dated 2008-06-23

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More information about scuba at CRAN

posted at: 13:38 | path: /cran/updated | permanent link to this entry

Package relax updated to version 1.083 with previous version 1.081 dated 2007-10-08

Author: Hans Peter Wolf
Title: relax -- R Editor for Literate Analysis and lateX
Description: package relax contains some functions for report writing, presentation, and programming: relax(), tangleR(), weaveR(), slider(). "relax" is written in R and Tcl/Tk. relax creates a new window (top level Tcl/Tk widget) that consists of two text fields and some buttons and menus. Text (chunks) and code (chunks) are inserted in the upper text field (report field). Code chunks are evaluated by clicking on EvalRCode. Results are shown in the lower text field (output field) and will be transfered to the report field by pressing on Insert. In this way you get correct reports. These reports can be loaded again in cause of presentation, modification and result checking. tangleR() and weaveR() implement a plain kind of tangling and weaving. slider() is designed to define sliders for interactive experiments in a simple way. The syntax rules of code chunks and text chunks are defined by the noweb system proposed by Norman Ramsey (http://www.eecs.harvard.edu/~nr/noweb/intro.html). For integrating jpeg graphics into the text field you need the Tcl/Tk Img package of Jan Nijtmans (see: http://members.chello.nl/~j.nijtmans/img.html or http://tkimg.sourceforge.net/, the package is found on http://sourceforge.net/projects/tkimg). The license terms concerning the img package are found in the source file of the package, see: relax/src/tkimg1.3.tar.gz. The windows version of relax contains the Tcl/Tk img package, so no further installations have to be done.

Diff between relax versions 1.081 dated 2007-10-08 and 1.083 dated 2008-06-23

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More information about relax at CRAN

posted at: 13:38 | path: /cran/updated | permanent link to this entry

Package prettyR updated to version 1.3-2 with previous version 1.3-1 dated 2008-06-16

Author: Jim Lemon , Philippe Grosjean
Title: Pretty descriptive stats.
Description: Functions for conventionally formatted descriptive stats, and to format R output as HTML.

Diff between prettyR versions 1.3-1 dated 2008-06-16 and 1.3-2 dated 2008-06-23

 DESCRIPTION           |    8 ++++----
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 7 files changed, 19 insertions(+), 11 deletions(-)

More information about prettyR at CRAN

posted at: 13:38 | path: /cran/updated | permanent link to this entry

Package playwith updated to version 0.8-56 with previous version 0.8-55 dated 2008-06-18

Author: Felix Andrews
Title: A GUI for interactive plots using GTK+
Description: A graphical user interface for viewing and interacting with R plots. It tries to work out the structure of a plot, in order to interact with it. The built-in features include: navigating the data space, identifying data points, editing and annotating the plot, and saving to a file. New tools can be defined. This package is based on RGtk2, and so requires the GTK+ libraries.

Diff between playwith versions 0.8-55 dated 2008-06-18 and 0.8-56 dated 2008-06-23

 DESCRIPTION     |    6 +--
 R/playTools.R   |   12 ++++---
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 inst/NEWS       |    8 +++++
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 5 files changed, 63 insertions(+), 60 deletions(-)

More information about playwith at CRAN

posted at: 13:38 | path: /cran/updated | permanent link to this entry

Package lme4 updated to version 0.999375-17 with previous version 0.99875-9 dated 2007-10-14

Author: Douglas Bates , Martin Maechler , and Bin Dai
Title: Linear mixed-effects models using S4 classes
Description: Fit linear and generalized linear mixed-effects models.

Diff between lme4 versions 0.99875-9 dated 2007-10-14 and 0.999375-17 dated 2008-06-23

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More information about lme4 at CRAN

posted at: 13:38 | path: /cran/updated | permanent link to this entry

Package laercio updated to version 0.9-2 with previous version 0.9-1 dated 2008-06-11

Author: Laercio Junio da Silva
Title: Duncan test, Tukey test and Scott-Knott test.
Description: The package contains functions to compare and group means.

Diff between laercio versions 0.9-1 dated 2008-06-11 and 0.9-2 dated 2008-06-23

 DESCRIPTION            |   10 ++--
 R/LScottKnott.R        |    2 
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More information about laercio at CRAN

posted at: 13:38 | path: /cran/updated | permanent link to this entry

Package Rcplex updated to version 0.1-3 with previous version 0.1-2 dated 2008-06-09

Author: Hector Corrada Bravo
Title: R interface to CPLEX
Description: R interface to CPLEX solvers for linear, quadratic, and (linear and quadratic) mixed integer programs. A working installation of CPLEX is required for usage of the Rcplex package. See the file "INSTALL" for details on how to install the Rcplex package in Linux/Unix-like systems and Windows systems. Support for sparse matrices is provided by an included S3-style class "simple_triplet_matrix" and by objects from the Matrix package class hierarchy.

Diff between Rcplex versions 0.1-2 dated 2008-06-09 and 0.1-3 dated 2008-06-23

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More information about Rcplex at CRAN

posted at: 13:38 | path: /cran/updated | permanent link to this entry

Package RSEIS updated to version 1.1-1 with previous version 1.1-0 dated 2008-04-27

Author: Jonathan M. Lees
Title: Seismic Time Series Analysis Tools
Description: Multiple interactive codes to analyze seismic data, via, spectrum analysis, wavelet transforms, particle motion, hodograms.

Diff between RSEIS versions 1.1-0 dated 2008-04-27 and 1.1-1 dated 2008-06-23

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More information about RSEIS at CRAN

posted at: 13:38 | path: /cran/updated | permanent link to this entry

Package HiddenMarkov updated to version 1.2-5 with previous version 1.2-4 dated 2008-02-18

Author: David Harte
Title: Hidden Markov Models
Description: Contains functions for the analysis of Discrete Time Hidden Markov Models, Markov Modulated GLMs and the Markov Modulated Poisson Process. It includes functions for simulation, parameter estimation, and the Viterbi algorithm. See the topic "HiddenMarkov" for an introduction to the package, and "Changes" for a list of recent changes. The algorithms are based of those of Walter Zucchini.

Diff between HiddenMarkov versions 1.2-4 dated 2008-02-18 and 1.2-5 dated 2008-06-23

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More information about HiddenMarkov at CRAN

posted at: 13:38 | path: /cran/updated | permanent link to this entry