Package subplex updated to version 1.1-1 with previous version 1.0-11 dated 2008-05-19

Author: Aaron A. King
Title: Subplex optimization algorithm
Description: The subplex algorithm for unconstrained optimization, developed by Tom Rowan.

Diff between subplex versions 1.0-11 dated 2008-05-19 and 1.1-1 dated 2008-06-24

 DESCRIPTION    |    8 ++--
 R/subplex.R    |   20 +++++++++---
 man/subplex.Rd |   94 ++++++++++++++++++++++++++++++++++++++-------------------
 3 files changed, 82 insertions(+), 40 deletions(-)

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New package wgaim with initial version 0.1-0
Package: wgaim
Type: Package
Title: Whole Genome Average Interval Mapping for QTL detection using mixed models
Version: 0.1-0
Date: 2008-03-05
Author: Julian Taylor , Simon Diffey , Ari Verbyla and Brian Cullis .
Maintainer: Julian Taylor
Depends: R (>= 2.0.0), qtl
SystemRequirements: asreml-R
Description: This package integrates sophisticated mixed modelling methods with a whole genome approach to detecting significant QTL's in linkage maps.
License: GPL (>= 2)
Packaged: Tue Jun 24 10:31:00 2008; tay333

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Package spgwr updated to version 0.5-3 with previous version 0.5-2 dated 2008-06-15

Author: Roger Bivand and Danlin Yu
Title: Geographically weighted regression
Description: Functions for computing geographically weighted regressions based on work by Chris Brunsdon, Martin Charlton and Stewart Fortheringham, http://ncg.nuim.ie/ncg/GWR/index.htm

Diff between spgwr versions 0.5-2 dated 2008-06-15 and 0.5-3 dated 2008-06-24

 ChangeLog      |   20 +++++++++++++++++---
 DESCRIPTION    |   30 +++++++++++++++---------------
 INDEX          |   32 ++++++++++++++++----------------
 R/gwr.R        |   14 ++++++++------
 R/gwr.cv.R     |   41 ++++++++++++++++++++++++++++++-----------
 R/gwr1.R       |    3 ++-
 R/zzz.R        |    2 +-
 inst/ChangeLog |   24 +++++++++++++++++++++++-
 man/gwr.Rd     |    2 +-
 man/gwr.cv.Rd  |    3 ++-
 10 files changed, 115 insertions(+), 56 deletions(-)

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Package lattice updated to version 0.17-10 with previous version 0.17-8 dated 2008-05-19

Author: Deepayan Sarkar
Title: Lattice Graphics
Description: Implementation of Trellis Graphics. See ?Lattice for a brief introduction

Diff between lattice versions 0.17-8 dated 2008-05-19 and 0.17-10 dated 2008-06-24

 DESCRIPTION       |    6 ++---
 R/bwplot.R        |    4 +--
 R/cloud.R         |   11 +++++----
 R/common.R        |   37 ++++++++++++++++++++++++++++++++
 R/densityplot.R   |    2 -
 R/histogram.R     |    2 -
 R/layout.R        |    4 +--
 R/levelplot.R     |   21 +++++++++++-------
 R/miscellaneous.R |   12 ++++++++--
 R/qq.R            |    4 +--
 R/qqmath.R        |    2 -
 R/scales.R        |    4 +--
 R/xyplot.R        |    4 +--
 SvnLog            |   62 ++++++++++++++++++++++++++++++++++++++++++++++++++++++
 po/R-lattice.pot  |    2 -
 15 files changed, 145 insertions(+), 32 deletions(-)

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Package ensembleBMA updated to version 3.0-2 with previous version 3.0-1 dated 2008-06-02

Author: Chris Fraley, Adrian E. Raftery, J. McLean Sloughter, Tilmann Gneiting, Michael Polakowski, University of Washington
Title: Probabilistic Forecasting using Ensembles and Bayesian Model Averaging
Description: Bayesian Model Averaging to create probabilistic forecasts from ensemble forecasts and weather observations.

Diff between ensembleBMA versions 3.0-1 dated 2008-06-02 and 3.0-2 dated 2008-06-24

 ensembleBMA-3.0-1/ensembleBMA/R/quantileForecast.ensembleBMAgamma.R |only
 ensembleBMA-3.0-2/ensembleBMA/DESCRIPTION                           |    4 
 ensembleBMA-3.0-2/ensembleBMA/R/ensembleBMAnormal.R                 |    4 
 ensembleBMA-3.0-2/ensembleBMA/R/fitBMAgamma0.R                      |    2 
 ensembleBMA-3.0-2/ensembleBMA/R/trainingData.R                      |  109 +++++++---
 ensembleBMA-3.0-2/ensembleBMA/man/ensembleBMAnormal.Rd              |    8 
 ensembleBMA-3.0-2/ensembleBMA/man/trainingData.Rd                   |   11 -
 7 files changed, 102 insertions(+), 36 deletions(-)

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Package arm updated to version 1.1-8 with previous version 1.1-7 dated 2008-06-10

Author: Andrew Gelman , Yu-Sung Su , Masanao Yajima , Jennifer Hill , Maria Grazia Pittau , Jouni Kerman and Tian Zheng
Title: Data Analysis Using Regression and Multilevel/Hierarchical Models
Description: R functions for processing lm, glm, mer and polr outputs.

Diff between arm versions 1.1-7 dated 2008-06-10 and 1.1-8 dated 2008-06-24

 arm-1.1-7/arm/R/mcsamp.R            |only
 arm-1.1-7/arm/man/mcsamp.Rd         |only
 arm-1.1-8/arm/CHANGELOG             |   11 ++++
 arm-1.1-8/arm/DESCRIPTION           |    8 +--
 arm-1.1-8/arm/NAMESPACE             |    2 
 arm-1.1-8/arm/R/AllClass.R          |    1 
 arm-1.1-8/arm/R/AllGeneric.R        |   21 ++++---
 arm-1.1-8/arm/R/AllInternal.R       |    6 +-
 arm-1.1-8/arm/R/bayesglm.R          |   24 ++++-----
 arm-1.1-8/arm/R/display.R           |   85 ++++++++++++++++---------------
 arm-1.1-8/arm/R/se.coef.R           |   78 ++++++++++++++---------------
 arm-1.1-8/arm/R/sigma.hat.R         |   58 +++++++++++----------
 arm-1.1-8/arm/R/sim.R               |   96 ++++++++++++++++++------------------
 arm-1.1-8/arm/man/coefplot.Rd       |   13 ++--
 arm-1.1-8/arm/man/display.Rd        |   41 ++++++---------
 arm-1.1-8/arm/man/multicomp.plot.Rd |    9 +--
 arm-1.1-8/arm/man/se.coef.Rd        |   11 ----
 arm-1.1-8/arm/man/sigma.hat.Rd      |   10 +--
 arm-1.1-8/arm/man/sim.Rd            |   12 +---
 19 files changed, 239 insertions(+), 247 deletions(-)

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