Author: Martin Maechler and many others.
Title: Utilities from Seminar fuer Statistik ETH Zurich
Description: Useful utilities ['goodies'] from Seminar fuer Statistik ETH
Zurich, many ported from S-plus times.
Diff between sfsmisc versions 1.0-2 dated 2008-05-05 and 1.0-3 dated 2008-06-26
ChangeLog | 7 +++++++ DESCRIPTION | 6 +++--- R/ps.goodies.R | 3 ++- inst/ChangeLog | 7 +++++++ man/ps.latex.Rd | 14 +++++++++----- 5 files changed, 28 insertions(+), 9 deletions(-)
Author: Ollivier TARAMASCO
Title: Hidden Markov Models simulations and estimations
Description: Discrete, univariate or multivariate gaussian,
mixture of univariate or multivariate gaussian HMM functions for simulation and estimation.
Diff between RHmm versions 1.0.1 dated 2007-11-23 and 1.0.3 dated 2008-06-26
DESCRIPTION | 6 +++--- R/RHmm-New.R | 2 +- README | 2 +- src/AllDistributions.h | 4 ++-- src/Hmm.h | 4 ++-- src/Makevars.win | 2 +- src/MultivariateNormalUtil.cpp | 4 ++-- src/MultivariateNormalUtil.h | 4 ++-- src/OTMathUtil.h | 4 ++-- src/RHmm.cpp | 4 ++-- src/RHmm.h | 4 ++-- src/R_Equivalents.h | 4 ++-- src/cBaumWelch.cpp | 4 ++-- src/cBaumWelch.h | 13 ++----------- src/cBaumWelchInParam.cpp | 4 ++-- src/cBaumWelchInParam.h | 4 ++-- src/cDiscrete.cpp | 4 ++-- src/cDiscrete.h | 4 ++-- src/cDistribution.h | 4 ++-- src/cHmm.cpp | 4 ++-- src/cHmm.h | 4 ++-- src/cHmmFit.cpp | 4 ++-- src/cHmmFit.h | 4 ++-- src/cInParam.cpp | 4 ++-- src/cInParam.h | 4 ++-- src/cMixtMultivariateNormal.cpp | 4 ++-- src/cMixtMultivariateNormal.h | 13 ++----------- src/cMixtUnivariateNormal.cpp | 4 ++-- src/cMixtUnivariateNormal.h | 4 ++-- src/cMultivariateNormal.h | 4 ++-- src/cMutivariateNormal.cpp | 4 ++-- src/cOTError.cpp | 12 ++++++++---- src/cOTError.h | 13 ++++++++++--- src/cOTMatrix.cpp | 13 ++++++++----- src/cOTMatrix.h | 15 +++++++++++---- src/cOTVector.cpp | 6 ++++-- src/cOTVector.h | 10 +++++++--- src/cRUtils.cpp | 4 ++-- src/cRUtils.h | 4 ++-- src/cRandomGenerator.h | 4 ++-- src/cUnivariateNormal.cpp | 4 ++-- src/cUnivariateNormal.h | 13 ++----------- src/cViterbi.cpp | 4 ++-- src/cViterbi.h | 4 ++-- src/kmeans.cpp | 4 ++-- src/kmeans.h | 13 ++----------- src/samplesUtil.cpp | 4 ++-- src/samplesUtil.h | 4 ++-- 48 files changed, 130 insertions(+), 139 deletions(-)
Author: Arnost Komarek
Diff between smoothSurv versions 0.3-11 dated 2007-10-27 and 0.3-12 dated 2008-06-26
Title: Survival Regression with Smoothed Error Distribution
Description: This package contains primarily a function to fit
a regression model with possibly right, left or interval
censored observations and with the error distrbution
expressed as a mixture of G-splines. Core part
of the computation is done in compiled C++ written
using the Scythe Statistical Libary Version 0.3.
CHANGES | 5 ++++
DESCRIPTION | 12 ++++-----
R/estimTdiff.R | 22 ++++++++++-------
R/minPenalty.R | 4 +--
man/MP.pseudoinv.Rd | 2 -
man/a2c.Rd | 2 -
man/c2a.Rd | 2 -
man/derivative.cc3.Rd | 2 -
man/derivative.expAD.Rd | 2 -
man/dextreme.Rd | 2 -
man/dstlogis.Rd | 2 -
man/estimTdiff.Rd | 2 -
man/eval.Gspline.Rd | 2 -
man/fdensity.smoothSurvReg.Rd | 2 -
man/find.c.Rd | 2 -
man/give.c.Rd | 2 -
man/hazard.smoothSurvReg.Rd | 2 -
man/minPenalty.Rd | 2 -
man/piece.Rd | 2 -
man/plot.smoothSurvReg.Rd | 2 -
man/print.estimTdiff.Rd | 2 -
man/print.smoothSurvReg.Rd | 2 -
man/residuals.smoothSurvReg.Rd | 2 -
man/smoothSurvReg.Rd | 51 ++++++++++++++++++++++++++++++++++++++++-
man/smoothSurvReg.control.Rd | 2 -
man/smoothSurvReg.fit.Rd | 2 -
man/smoothSurvReg.object.Rd | 2 -
man/std.data.Rd | 2 -
man/survfit.smoothSurvReg.Rd | 2 -
src/Scythe_Error.h | 1
30 files changed, 101 insertions(+), 42 deletions(-)
Author: Douglas Bates
Diff between lme4 versions 0.999375-19 dated 2008-06-26 and 0.999375-20 dated 2008-06-26
Title: Linear mixed-effects models using S4 classes
Description: Fit linear and generalized linear mixed-effects models.
ChangeLog | 64 ++++++++++---------
DESCRIPTION | 6 -
inst/doc/Implementation.pdf |binary
inst/doc/PLSvGLS.pdf |binary
inst/doc/Theory.pdf |binary
tests/nlmer.R | 20 +++---
tests/nlmer.Rout.save | 146 ++++++++++++++++++++++++--------------------
7 files changed, 130 insertions(+), 106 deletions(-)
Author: Arnost Komarek
Diff between glmmAK versions 1.1 dated 2007-10-27 and 1.2 dated 2008-06-26
Title: Generalized Linear Mixed Models
Description: Later
DESCRIPTION | 12 ++++++------
R/cumlogitRE.predict.R | 3 ++-
R/logpoissonRE.predict.R | 3 ++-
inst/doc/ex-Epileptic.R | 2 +-
inst/doc/ex-Epileptic.pdf |binary
inst/doc/ex-Toenail.R | 2 +-
inst/doc/ex-Toenail.pdf |binary
inst/doc/index.html | 2 +-
man/AKmiscel.Rd | 2 +-
man/BPvalue.Rd | 2 +-
man/GMRF.Rd | 2 +-
man/QuantileFun.Rd | 2 +-
man/copula.Rd | 2 +-
man/cumlogit.Rd | 2 +-
man/cumlogit.help.Rd | 2 +-
man/cumlogitRE.Rd | 6 +++---
man/cumlogitRE.predict.Rd | 6 +++---
man/densplotAK.Rd | 2 +-
man/glmmAK.files2coda.Rd | 2 +-
man/glmmAK.help.Rd | 2 +-
man/gspline1.Rd | 2 +-
man/gspline2.Rd | 2 +-
man/logpoisson.Rd | 2 +-
man/logpoisson.help.Rd | 2 +-
man/logpoissonRE.Rd | 6 +++---
man/logpoissonRE.predict.Rd | 6 +++---
man/maxPosterProb.Rd | 2 +-
man/scanFH.Rd | 2 +-
man/summaryGspline1.Rd | 2 +-
man/summaryGspline2.Rd | 2 +-
30 files changed, 43 insertions(+), 41 deletions(-)
Author: Arnost Komarek
Diff between bayesSurv versions 0.5-9 dated 2007-10-27 and 0.5-10 dated 2008-06-26
Title: Bayesian Survival Regression with Flexible Error and Random Effects Distributions
Description: Later
DESCRIPTION | 12 ++++++------
R/marginal.bayesGspline.R | 2 +-
R/sampled.kendall.tau.R | 2 +-
man/bayesBisurvreg.Rd | 2 +-
man/bayesBisurvreg.help.Rd | 2 +-
man/bayesDensity.Rd | 2 +-
man/bayesGspline.Rd | 2 +-
man/bayesHistogram.Rd | 2 +-
man/bayesHistogram.help.Rd | 2 +-
man/bayessurvreg.help.Rd | 2 +-
man/bayessurvreg1.Rd | 2 +-
man/bayessurvreg1.files2init.Rd | 2 +-
man/bayessurvreg1.help.Rd | 2 +-
man/bayessurvreg2.Rd | 2 +-
man/bayessurvreg2.help.Rd | 2 +-
man/bayessurvreg3.Rd | 2 +-
man/bayessurvreg3.help.Rd | 2 +-
man/credible.region.Rd | 2 +-
man/densplot2.Rd | 2 +-
man/files.Gspline.Rd | 2 +-
man/files2coda.Rd | 2 +-
man/give.init.Rd | 3 ++-
man/give.summary.Rd | 2 +-
man/marginal.bayesGspline.Rd | 2 +-
man/plot.bayesDensity.Rd | 2 +-
man/plot.bayesGspline.Rd | 2 +-
man/plot.marginal.bayesGspline.Rd | 2 +-
man/predictive.Rd | 2 +-
man/predictive2.Rd | 2 +-
man/print.bayesDensity.Rd | 2 +-
man/rMVNorm.Rd | 2 +-
man/rWishart.Rd | 2 +-
man/sampleCovMat.Rd | 2 +-
man/sampled.kendall.tau.Rd | 2 +-
man/scanFN.Rd | 2 +-
man/simult.pvalue.Rd | 2 +-
man/traceplot2.Rd | 2 +-
man/vecr2matr.Rd | 2 +-
38 files changed, 44 insertions(+), 43 deletions(-)
Author: Jonathan M. Lees
Title: Grades Setting and Exam Maker
Description: Programs to determine student grades and create
examinations from Question banks. Programs will create numerous
multiple choice exams, randomly shuffled, for different versions of same question list.
Diff between ProfessR versions 1.0-3 dated 2008-02-19 and 1.0-4 dated 2008-06-26
ProfessR-1.0-3/ProfessR/inst/doc/ExamMaker.aux |only ProfessR-1.0-3/ProfessR/inst/doc/ExamMaker.dvi |only ProfessR-1.0-3/ProfessR/inst/doc/ExamMaker.log |only ProfessR-1.0-3/ProfessR/inst/doc/ExamMaker.tex |only ProfessR-1.0-3/ProfessR/inst/doc/Grader.aux |only ProfessR-1.0-3/ProfessR/inst/doc/Grader.dvi |only ProfessR-1.0-3/ProfessR/inst/doc/Grader.log |only ProfessR-1.0-3/ProfessR/inst/doc/Grader.tex |only ProfessR-1.0-3/ProfessR/inst/doc/Rplots.ps |only ProfessR-1.0-3/ProfessR/inst/doc/exam2A.tex |only ProfessR-1.0-3/ProfessR/inst/doc/exam2A.tex.ANS |only ProfessR-1.0-3/ProfessR/inst/doc/exam2AMAST.tex |only ProfessR-1.0-3/ProfessR/inst/doc/exam2Asolutions.tex |only ProfessR-1.0-3/ProfessR/inst/doc/exam2B.tex |only ProfessR-1.0-3/ProfessR/inst/doc/exam2B.tex.ANS |only ProfessR-1.0-3/ProfessR/inst/doc/exam2BMAST.tex |only ProfessR-1.0-3/ProfessR/inst/doc/exam2Bsolutions.tex |only ProfessR-1.0-3/ProfessR/inst/doc/grades-004.eps |only ProfessR-1.0-3/ProfessR/inst/doc/grades-004.pdf |only ProfessR-1.0-3/ProfessR/inst/doc/grades-005.eps |only ProfessR-1.0-3/ProfessR/inst/doc/grades-005.pdf |only ProfessR-1.0-3/ProfessR/inst/doc/t.tex |only ProfessR-1.0-4/ProfessR/DESCRIPTION | 6 +-- ProfessR-1.0-4/ProfessR/inst/doc/ExamMaker.Rnw | 31 ++++++++++++++++++- ProfessR-1.0-4/ProfessR/inst/doc/ExamMaker.pdf |binary ProfessR-1.0-4/ProfessR/inst/doc/Grader.Rnw | 26 +++++++++++++++ ProfessR-1.0-4/ProfessR/inst/doc/Grader.pdf |binary ProfessR-1.0-4/ProfessR/man/DUMPgrades.Rd | 2 - ProfessR-1.0-4/ProfessR/man/E2grades.Rd | 4 +- ProfessR-1.0-4/ProfessR/man/ProfessR-package.Rd | 4 +- ProfessR-1.0-4/ProfessR/man/checkgrades.Rd | 2 - ProfessR-1.0-4/ProfessR/man/do.grades.Rd | 2 - 32 files changed, 66 insertions(+), 11 deletions(-)
Author: Jonathan M. Lees
Diff between zoeppritz versions 1.0 dated 2007-10-15 and 1.0-1 dated 2008-06-26
Title: Zoeppritz Equations
Description: Calculate and plot scattering matrix coefficients for plane waves at interface.
DESCRIPTION | 4 ++--
man/zoeppritz-package.Rd | 2 +-
2 files changed, 3 insertions(+), 3 deletions(-)
Author: Simon Jackman, with contributions from
Alex Tahk, Achim Zeileis, Christina Maimone and Jim Fearon
Title: Political Science Computational Laboratory, Stanford University
Description: Bayesian analysis of item-response theory (IRT) models, roll call analysis;
computing highest density regions; maximum likelihood estimation of
zero-inflated and hurdle models for count data; goodness-of-fit measures for
GLMs; data sets used in writing and teaching at the Political Science
Computational Laboratory; seats-votes curves.
Diff between pscl versions 0.95 dated 2008-03-20 and 0.96 dated 2008-06-26
DESCRIPTION | 10 HISTORY | 8 R/plot.ideal.r | 5 R/postProcess.r | 4 R/summary.ideal.r | 15 - R/zeroinfl.R | 13 - inst/CITATION | 17 - inst/doc/auto |only inst/doc/countreg.Rnw | 612 +++++++++++++++++++++++--------------------------- inst/doc/countreg.bib | 62 +++-- inst/doc/countreg.pdf |binary man/zeroinfl.Rd | 26 +- 12 files changed, 384 insertions(+), 388 deletions(-)
Author: Yves Croissant
Diff between plm versions 0.3-2 dated 2008-02-29 and 1.0-0 dated 2008-06-26
Title: Linear models for panel data
Description: A set of estimators and tests for panel data
plm-0.3-2/plm/inst/doc/plmEN.pdf |only
plm-0.3-2/plm/inst/doc/plmEN.rnw |only
plm-0.3-2/plm/inst/doc/plmEN.tex |only
plm-1.0-0/plm/DESCRIPTION | 6
plm-1.0-0/plm/NAMESPACE | 5
plm-1.0-0/plm/R/pcdtest.R |only
plm-1.0-0/plm/R/plm.formula.R | 16 +
plm-1.0-0/plm/R/plm.model.R | 17 +
plm-1.0-0/plm/R/ptest.R | 2
plm-1.0-0/plm/changelog | 113 +++++++++---
plm-1.0-0/plm/inst/CITATION |only
plm-1.0-0/plm/inst/doc/bibliojss.bib |only
plm-1.0-0/plm/inst/doc/plm.pdf |only
plm-1.0-0/plm/inst/doc/plm.rnw |only
plm-1.0-0/plm/man/pFtest.Rd | 108 ++++++------
plm-1.0-0/plm/man/pbgtest.Rd | 8
plm-1.0-0/plm/man/pbltest.Rd | 21 +-
plm-1.0-0/plm/man/pbsytest.Rd | 13 -
plm-1.0-0/plm/man/pcdtest.Rd |only
plm-1.0-0/plm/man/pdwtest.Rd | 20 +-
plm-1.0-0/plm/man/pggls.Rd | 5
plm-1.0-0/plm/man/pgmm.Rd | 306 +++++++++++++++++------------------
plm-1.0-0/plm/man/plm.Rd | 298 +++++++++++++++++-----------------
plm-1.0-0/plm/man/plm.data.Rd | 118 ++++++-------
plm-1.0-0/plm/man/plmtest.Rd | 158 +++++++++---------
plm-1.0-0/plm/man/pooltest.Rd | 114 ++++++-------
plm-1.0-0/plm/man/pvar.Rd | 124 +++++++-------
plm-1.0-0/plm/man/pvcm.Rd | 155 ++++++++---------
plm-1.0-0/plm/man/pvcovHC.Rd | 216 ++++++++++++------------
plm-1.0-0/plm/man/pwartest.Rd | 33 ++-
plm-1.0-0/plm/man/pwfdtest.Rd | 26 +-
plm-1.0-0/plm/man/pwtest.Rd | 18 +-
plm-1.0-0/plm/man/sargan.Rd | 89 +++++-----
33 files changed, 1057 insertions(+), 932 deletions(-)
Author: Douglas Bates
Diff between mlmRev versions 0.995-1 dated 2006-01-20 and 0.99875-1 dated 2008-06-26
Title: Examples from Multilevel Modelling Software Review
Description: Data and examples from a multilevel modelling software review
as well as other well-known data sets from the multilevel modelling
literature.
mlmRev-0.995-1/mlmRev/inst/doc/MlmSoftRev.tex |only
mlmRev-0.995-1/mlmRev/inst/doc/Rplots.ps |only
mlmRev-0.995-1/mlmRev/inst/doc/auto |only
mlmRev-0.995-1/mlmRev/inst/doc/figs/SoftRev-Contra1.pdf |only
mlmRev-0.995-1/mlmRev/inst/doc/figs/SoftRev-Contra2.pdf |only
mlmRev-0.995-1/mlmRev/inst/doc/figs/SoftRev-Contra3.pdf |only
mlmRev-0.995-1/mlmRev/inst/doc/figs/SoftRev-Examplot10.pdf |only
mlmRev-0.995-1/mlmRev/inst/doc/figs/SoftRev-Examplot7.pdf |only
mlmRev-0.995-1/mlmRev/inst/doc/figs/SoftRev-Examplot8.pdf |only
mlmRev-0.995-1/mlmRev/inst/doc/figs/SoftRev-Examplot9.pdf |only
mlmRev-0.99875-1/mlmRev/ChangeLog | 16
mlmRev-0.99875-1/mlmRev/DESCRIPTION | 13
mlmRev-0.99875-1/mlmRev/data/Chem97.rda |binary
mlmRev-0.99875-1/mlmRev/data/Hsb82.rda |binary
mlmRev-0.99875-1/mlmRev/data/bdf.rda |binary
mlmRev-0.99875-1/mlmRev/data/star.rda |binary
mlmRev-0.99875-1/mlmRev/inst/doc/MlmSoftRev.Rnw | 195
mlmRev-0.99875-1/mlmRev/inst/doc/MlmSoftRev.pdf |213542 -----------
mlmRev-0.99875-1/mlmRev/inst/doc/StarData.pdf |binary
mlmRev-0.99875-1/mlmRev/inst/doc/figs/SoftRev-ExamMosaic.pdf | 1434
mlmRev-0.99875-1/mlmRev/inst/doc/figs/SoftRev-Examplot1.pdf | 9148
mlmRev-0.99875-1/mlmRev/inst/doc/figs/SoftRev-Examplot2.pdf | 612
mlmRev-0.99875-1/mlmRev/inst/doc/figs/SoftRev-Examplot3.pdf | 4782
mlmRev-0.99875-1/mlmRev/inst/doc/figs/SoftRev-Examplot4.pdf | 4686
mlmRev-0.99875-1/mlmRev/inst/doc/figs/SoftRev-Examplot4a.pdf | 4690
mlmRev-0.99875-1/mlmRev/inst/doc/figs/SoftRev-Examplot4c.pdf | 772
mlmRev-0.99875-1/mlmRev/inst/doc/figs/SoftRev-Examplot5.pdf | 2334
mlmRev-0.99875-1/mlmRev/inst/doc/figs/SoftRev-Examplot5b.pdf | 478
mlmRev-0.99875-1/mlmRev/inst/doc/figs/SoftRev-Examplot6.pdf | 9560
mlmRev-0.99875-1/mlmRev/inst/doc/figs/SoftRev-Examplot6b.pdf | 1634
mlmRev-0.99875-1/mlmRev/inst/doc/orig.rda |binary
mlmRev-0.99875-1/mlmRev/man/Contraception.Rd | 6
mlmRev-0.99875-1/mlmRev/man/Mmmec.Rd | 6
mlmRev-0.99875-1/mlmRev/man/Oxboys.Rd | 7
mlmRev-0.99875-1/mlmRev/man/bdf.Rd | 13
mlmRev-0.99875-1/mlmRev/man/egsingle.Rd | 2
mlmRev-0.99875-1/mlmRev/man/s3bbx.Rd | 18
mlmRev-0.99875-1/mlmRev/man/s3bby.Rd | 14
mlmRev-0.99875-1/mlmRev/tests/Early.Rout.save | 47
mlmRev-0.99875-1/mlmRev/tests/Hsb82.Rout.save | 48
mlmRev-0.99875-1/mlmRev/tests/ScotsSec.R | 7
mlmRev-0.99875-1/mlmRev/tests/ScotsSec.Rout.save | 90
mlmRev-0.99875-1/mlmRev/tests/bdf.Rout.save | 44
mlmRev-0.99875-1/mlmRev/tests/egsingle.Rout.save | 98
mlmRev-0.99875-1/mlmRev/tests/guImmun.Rout.save | 111
mlmRev-0.99875-1/mlmRev/tests/lmerTest.R | 1
mlmRev-0.99875-1/mlmRev/tests/lmerTest.Rout.save | 242
47 files changed, 20649 insertions(+), 234001 deletions(-)
Author: original by Gareth Ambler
Diff between mfp versions 1.4.4 dated 2008-04-07 and 1.4.5 dated 2008-06-26
Title: Multivariable Fractional Polynomials
Description: Fractional polynomials are used to represent curvature in regression models. A key reference is Royston and Altman, 1994.
Changelog | 1 +
DESCRIPTION | 6 +++---
R/mfp.R | 17 ++++++++++++-----
inst/doc/mfp-FIG1.pdf | 6 +++---
inst/doc/mfp-FIG2.pdf | 6 +++---
inst/doc/mfp.pdf |binary
inst/doc/mfp.tex | 8 ++++----
7 files changed, 26 insertions(+), 18 deletions(-)
Author: Douglas Bates
Diff between lme4 versions 0.999375-18 dated 2008-06-25 and 0.999375-19 dated 2008-06-26
Title: Linear mixed-effects models using S4 classes
Description: Fit linear and generalized linear mixed-effects models.
ChangeLog | 24 ++++
DESCRIPTION | 8 -
R/lmer.R | 59 +++++------
inst/doc/Implementation.pdf |binary
inst/doc/PLSvGLS.pdf |binary
inst/doc/Theory.pdf |binary
src/init.c | 1
src/lmer.c | 179 +++++++++++++++++++++-------------
src/lmer.h | 1
tests/nlmer-conv.R |only
tests/nlmer.R | 62 ++++++++++-
tests/nlmer.Rout.save | 230 +++++++++++++-------------------------------
12 files changed, 295 insertions(+), 269 deletions(-)
Author: Original by Littel, Milliken, Stroup, and Wolfinger
modifications by Douglas Bates
Diff between SASmixed versions 0.4-2 dated 2006-10-20 and 0.4-4 dated 2008-06-26
Title: Data sets from "SAS System for Mixed Models"
Description: Data sets and sample lmer analyses corresponding
to the examples in Littel, Milliken, Stroup and Wolfinger
(1996), "SAS System for Mixed Models", SAS Institute.
SASmixed-0.4-2/SASmixed/INDEX |only
SASmixed-0.4-2/SASmixed/inst/doc/Usinglme.Rnw |only
SASmixed-0.4-2/SASmixed/inst/doc/Usinglme.bib |only
SASmixed-0.4-2/SASmixed/inst/doc/Usinglme.pdf |only
SASmixed-0.4-4/SASmixed/DESCRIPTION | 8
SASmixed-0.4-4/SASmixed/inst/doc/Rplots.ps |only
SASmixed-0.4-4/SASmixed/inst/doc/Usinglmer.Rnw |only
SASmixed-0.4-4/SASmixed/inst/doc/Usinglmer.bib |only
SASmixed-0.4-4/SASmixed/inst/doc/Usinglmer.pdf |only
SASmixed-0.4-4/SASmixed/inst/doc/Usinglmer.tex |only
SASmixed-0.4-4/SASmixed/inst/doc/figs/f-adg1.pdf | 684 +++++++++++++----------
SASmixed-0.4-4/SASmixed/inst/doc/figs/f-bib1.pdf | 636 ++++++++++++---------
SASmixed-0.4-4/SASmixed/man/Animal.Rd | 1
SASmixed-0.4-4/SASmixed/man/AvgDailyGain.Rd | 1
SASmixed-0.4-4/SASmixed/man/BIB.Rd | 1
SASmixed-0.4-4/SASmixed/man/Bond.Rd | 1
SASmixed-0.4-4/SASmixed/man/Cultivation.Rd | 1
SASmixed-0.4-4/SASmixed/man/Demand.Rd | 1
SASmixed-0.4-4/SASmixed/man/Genetics.Rd | 1
SASmixed-0.4-4/SASmixed/man/HR.Rd | 1
SASmixed-0.4-4/SASmixed/man/IncBlk.Rd | 1
SASmixed-0.4-4/SASmixed/man/Mississippi.Rd | 1
SASmixed-0.4-4/SASmixed/man/Multilocation.Rd | 1
SASmixed-0.4-4/SASmixed/man/PBIB.Rd | 1
SASmixed-0.4-4/SASmixed/man/SIMS.Rd | 4
SASmixed-0.4-4/SASmixed/man/Semi2.Rd | 1
SASmixed-0.4-4/SASmixed/man/Semiconductor.Rd | 4
SASmixed-0.4-4/SASmixed/man/TeachingI.Rd | 1
SASmixed-0.4-4/SASmixed/man/TeachingII.Rd | 1
SASmixed-0.4-4/SASmixed/man/WWheat.Rd | 2
SASmixed-0.4-4/SASmixed/man/WaferTypes.Rd | 1
SASmixed-0.4-4/SASmixed/man/Weights.Rd | 1
32 files changed, 786 insertions(+), 569 deletions(-)
Author: Reinhold Hatzinger, Patrick Mair, Norman Verhelst
Title: Rasch Sampler
Description: Sampling binary matrices with fixed margins
Diff between RaschSampler versions 0.8.0 dated 2006-11-09 and 0.8-1 dated 2008-06-26
DESCRIPTION | 6 +++--- man/RSctr.Rd | 3 +-- man/RSmpl.Rd | 3 +-- man/RaschSampler.package.Rd | 12 ++++++------ man/rsctrl.Rd | 6 +++--- man/rstats.Rd | 1 - src/RaschSampler.f90 | 19 +++++++++++++++---- 7 files changed, 29 insertions(+), 21 deletions(-)
Author: Jonathan M. Lees
Title: Visualization for seismic tomography
Description: Created mainly for use with seismic tomography, this program
plots tomographic images, and allows one to interact and query
three-dimensional tomographic models.
Vertical cross-sectional cuts can be extracted by mouse click.
Geographic information can be added easily.
Diff between RTOMO versions 1.0-3 dated 2008-02-16 and 1.0-4 dated 2008-06-26
DESCRIPTION | 6 +++--- R/TOMO3D.drive.R | 4 ++-- R/TOMOinfo.R | 7 +++++-- demo/tomo.R | 3 ++- man/RTOMO-package.Rd | 4 ++-- 5 files changed, 14 insertions(+), 10 deletions(-)
Author: Jonathan M. Lees
Title: Graphical User Interface (GUI) for interactive R analysis sessions
Description: Poor Man's Gui: create interactive R analysis sessions
Diff between RPMG versions 1.0-1 dated 2007-10-11 and 1.0-2 dated 2008-06-26
DESCRIPTION | 6 +++--- R/GETXprofile.R | 40 +++++++++++++++++++++++++++++++--------- man/GETXprofile.Rd | 3 ++- man/RPMG-package.Rd | 4 ++-- 4 files changed, 38 insertions(+), 15 deletions(-)
Author: Douglas Bates
Diff between Matrix versions 0.999375-9 dated 2008-03-30 and 0.999375-10 dated 2008-06-26
Title: A Matrix package for R
Description: Classes and methods for dense and sparse matrices and
operations on them using Lapack, CSparse and CHOLMOD
Matrix-0.999375-10/Matrix/ChangeLog | 243 +
Matrix-0.999375-10/Matrix/DESCRIPTION | 8
Matrix-0.999375-10/Matrix/Done | 25
Matrix-0.999375-10/Matrix/NAMESPACE | 12
Matrix-0.999375-10/Matrix/R/AllClass.R | 17
Matrix-0.999375-10/Matrix/R/AllGeneric.R | 52
Matrix-0.999375-10/Matrix/R/Auxiliaries.R | 371 +-
Matrix-0.999375-10/Matrix/R/Csparse.R | 10
Matrix-0.999375-10/Matrix/R/Matrix.R | 54
Matrix-0.999375-10/Matrix/R/Ops.R | 415 +-
Matrix-0.999375-10/Matrix/R/Rsparse.R | 11
Matrix-0.999375-10/Matrix/R/Tsparse.R | 98
Matrix-0.999375-10/Matrix/R/corMatrix.R | 15
Matrix-0.999375-10/Matrix/R/dMatrix.R | 116
Matrix-0.999375-10/Matrix/R/ddenseMatrix.R | 8
Matrix-0.999375-10/Matrix/R/denseMatrix.R | 12
Matrix-0.999375-10/Matrix/R/dgCMatrix.R | 3
Matrix-0.999375-10/Matrix/R/dgTMatrix.R | 78
Matrix-0.999375-10/Matrix/R/dgeMatrix.R | 5
Matrix-0.999375-10/Matrix/R/diagMatrix.R | 506 ++
Matrix-0.999375-10/Matrix/R/dpoMatrix.R | 33
Matrix-0.999375-10/Matrix/R/dppMatrix.R | 19
Matrix-0.999375-10/Matrix/R/dsCMatrix.R | 44
Matrix-0.999375-10/Matrix/R/dsTMatrix.R | 12
Matrix-0.999375-10/Matrix/R/dspMatrix.R | 6
Matrix-0.999375-10/Matrix/R/dsparseMatrix.R | 10
Matrix-0.999375-10/Matrix/R/dsyMatrix.R | 31
Matrix-0.999375-10/Matrix/R/dtCMatrix.R | 14
Matrix-0.999375-10/Matrix/R/dtTMatrix.R | 6
Matrix-0.999375-10/Matrix/R/dtpMatrix.R | 16
Matrix-0.999375-10/Matrix/R/dtrMatrix.R | 32
Matrix-0.999375-10/Matrix/R/expm.R |only
Matrix-0.999375-10/Matrix/R/lMatrix.R | 53
Matrix-0.999375-10/Matrix/R/lgCMatrix.R | 8
Matrix-0.999375-10/Matrix/R/lgTMatrix.R | 1
Matrix-0.999375-10/Matrix/R/lsCMatrix.R | 7
Matrix-0.999375-10/Matrix/R/lsTMatrix.R | 21
Matrix-0.999375-10/Matrix/R/lsparseMatrix.R | 28
Matrix-0.999375-10/Matrix/R/ltCMatrix.R | 9
Matrix-0.999375-10/Matrix/R/ltTMatrix.R | 18
Matrix-0.999375-10/Matrix/R/ndenseMatrix.R | 2
Matrix-0.999375-10/Matrix/R/ngCMatrix.R | 5
Matrix-0.999375-10/Matrix/R/ngTMatrix.R | 8
Matrix-0.999375-10/Matrix/R/not.R | 162
Matrix-0.999375-10/Matrix/R/nsCMatrix.R | 6
Matrix-0.999375-10/Matrix/R/nsTMatrix.R | 18
Matrix-0.999375-10/Matrix/R/nsparseMatrix.R | 52
Matrix-0.999375-10/Matrix/R/ntCMatrix.R | 17
Matrix-0.999375-10/Matrix/R/ntTMatrix.R | 19
Matrix-0.999375-10/Matrix/R/pMatrix.R | 6
Matrix-0.999375-10/Matrix/R/sparseMatrix.R | 162
Matrix-0.999375-10/Matrix/R/sparseVector.R | 2
Matrix-0.999375-10/Matrix/R/triangularMatrix.R | 10
Matrix-0.999375-10/Matrix/R/zzz.R | 2
Matrix-0.999375-10/Matrix/TODO | 29
Matrix-0.999375-10/Matrix/configure |only
Matrix-0.999375-10/Matrix/inst/doc/Comparisons.pdf |binary
Matrix-0.999375-10/Matrix/inst/doc/Design-issues.Rnw | 13
Matrix-0.999375-10/Matrix/inst/doc/Design-issues.pdf | 697 ++--
Matrix-0.999375-10/Matrix/inst/doc/Intro2Matrix.Rnw | 83
Matrix-0.999375-10/Matrix/inst/doc/Intro2Matrix.pdf | 2726 +++++++++-------
Matrix-0.999375-10/Matrix/inst/doc/Introduction.pdf |binary
Matrix-0.999375-10/Matrix/inst/test-tools.R | 276 +
Matrix-0.999375-10/Matrix/man/CsparseMatrix-class.Rd | 5
Matrix-0.999375-10/Matrix/man/Matrix-class.Rd | 11
Matrix-0.999375-10/Matrix/man/RsparseMatrix-class.Rd | 5
Matrix-0.999375-10/Matrix/man/TsparseMatrix-class.Rd | 5
Matrix-0.999375-10/Matrix/man/bdiag.Rd | 8
Matrix-0.999375-10/Matrix/man/dMatrix-class.Rd | 24
Matrix-0.999375-10/Matrix/man/ddiMatrix-class.Rd | 6
Matrix-0.999375-10/Matrix/man/diagonalMatrix-class.Rd | 66
Matrix-0.999375-10/Matrix/man/dpoMatrix-class.Rd | 8
Matrix-0.999375-10/Matrix/man/dsCMatrix-class.Rd | 4
Matrix-0.999375-10/Matrix/man/dsyMatrix-class.Rd | 16
Matrix-0.999375-10/Matrix/man/dtRMatrix-class-def.Rd | 2
Matrix-0.999375-10/Matrix/man/expm.Rd | 18
Matrix-0.999375-10/Matrix/man/image-methods.Rd | 57
Matrix-0.999375-10/Matrix/man/ldiMatrix-class.Rd | 10
Matrix-0.999375-10/Matrix/man/lgeMatrix-class.Rd | 4
Matrix-0.999375-10/Matrix/man/lsparseMatrix-classes.Rd | 23
Matrix-0.999375-10/Matrix/man/lu.Rd | 13
Matrix-0.999375-10/Matrix/man/nMatrix-class.Rd | 17
Matrix-0.999375-10/Matrix/man/ngeMatrix-class.Rd | 4
Matrix-0.999375-10/Matrix/man/nnzero.Rd | 5
Matrix-0.999375-10/Matrix/man/nsparseMatrix-classes.Rd | 56
Matrix-0.999375-10/Matrix/man/pMatrix-class.Rd | 19
Matrix-0.999375-10/Matrix/man/printSpMatrix.Rd | 32
Matrix-0.999375-10/Matrix/man/sparseLU-class.Rd | 10
Matrix-0.999375-10/Matrix/man/sparseMatrix-class.Rd | 21
Matrix-0.999375-10/Matrix/man/triangularMatrix-class.Rd | 2
Matrix-0.999375-10/Matrix/src/Csparse.c | 14
Matrix-0.999375-10/Matrix/src/Mutils.c | 73
Matrix-0.999375-10/Matrix/src/Mutils.h | 23
Matrix-0.999375-10/Matrix/src/chm_common.c | 5
Matrix-0.999375-10/Matrix/src/dense.c | 3
Matrix-0.999375-10/Matrix/src/dgCMatrix.c | 12
Matrix-0.999375-10/Matrix/src/dgTMatrix.c | 10
Matrix-0.999375-10/Matrix/src/dgeMatrix.c | 100
Matrix-0.999375-10/Matrix/src/dsCMatrix.c | 47
Matrix-0.999375-10/Matrix/src/init.c | 3
Matrix-0.999375-10/Matrix/tests/Class+Meth.R | 251 -
Matrix-0.999375-10/Matrix/tests/Simple.R |only
Matrix-0.999375-10/Matrix/tests/dpo-test.R |only
Matrix-0.999375-10/Matrix/tests/factorizing.R | 9
Matrix-0.999375-10/Matrix/tests/indexing.R | 84
Matrix-0.999375-10/Matrix/tests/indexing.Rout.save | 555 ++-
Matrix-0.999375-10/Matrix/tests/matprod.R | 4
Matrix-0.999375-10/Matrix/tests/matr-exp.R | 18
Matrix-0.999375-10/Matrix/tests/validObj.R | 27
Matrix-0.999375-9/Matrix/tests/dpoMatrix.R |only
Matrix-0.999375-9/Matrix/tests/simple.R |only
111 files changed, 5471 insertions(+), 2940 deletions(-)
More information about PredictiveRegression at CRAN
Permanent link
Author: Jasjeet Singh Sekhon
Diff between Matching versions 4.6-1 dated 2008-01-22 and 4.6-2 dated 2008-06-26
Title: Multivariate and Propensity Score Matching with Balance Optimization
Description: Provides functions for multivariate and propensity score matching
and for finding optimal balance based on a genetic search algorithm.
A variety of univariate and multivariate metrics to
determine if balance has been obtained are also provided.
DESCRIPTION | 6 +++---
R/Matching.R | 25 ++++++++++++++++---------
src/scythematrix.h | 8 +++++---
tests/AbadieImbens.Rout.save | 8 ++++----
tests/DehejiaWahba.Rout.save | 8 ++++----
tests/GenMatch.Rout.save | 12 ++++++------
tests/Matchby.Rout.save | 8 ++++----
7 files changed, 42 insertions(+), 33 deletions(-)
Author: Douglas Bates
Diff between MEMSS versions 0.2-4 dated 2006-10-03 and 0.3-4 dated 2008-06-26
Title: Data sets from Mixed-effects Models in S
Description: Data sets and sample analyses from Pinheiro and Bates,
"Mixed-effects Models in S and S-PLUS" (Springer, 2000).
DESCRIPTION | 10 ++---
data/Alfalfa.rda |binary
data/Assay.rda |binary
data/BodyWeight.rda |binary
data/CO2.rda |only
data/Cefamandole.rda |binary
data/Dialyzer.rda |binary
data/Earthquake.rda |binary
data/Fatigue.rda |binary
data/Gasoline.rda |binary
data/Glucose.rda |binary
data/Glucose2.rda |binary
data/Gun.rda |binary
data/IGF.rda |binary
data/Machines.rda |binary
data/MathAchSchool.rda |binary
data/MathAchieve.rda |binary
data/Meat.rda |binary
data/Milk.rda |binary
data/Muscle.rda |binary
data/Nitrendipene.rda |binary
data/Oats.rda |binary
data/Orange.rda |only
data/Orthodont.rda |binary
data/Ovary.rda |binary
data/Oxide.rda |binary
data/PBG.rda |binary
data/Phenobarb.rda |binary
data/Pixel.rda |binary
data/Quinidine.rda |binary
data/Rail.rda |binary
data/RatPupWeight.rda |binary
data/Relaxin.rda |binary
data/Remifentanil.rda |binary
data/Soybean.rda |binary
data/Spruce.rda |binary
data/Tetracycline1.rda |binary
data/Tetracycline2.rda |binary
data/Theoph.rda |only
data/Wafer.rda |binary
data/Wheat.rda |binary
data/Wheat2.rda |binary
data/ergoStool.rda |binary
man/Alfalfa.Rd | 10 +----
man/Assay.Rd | 28 ++++++++++------
man/BodyWeight.Rd | 10 +----
man/CO2.Rd |only
man/Cefamandole.Rd | 9 +++--
man/Dialyzer.Rd | 10 +----
man/Earthquake.Rd | 19 ++--------
man/Fatigue.Rd | 15 +++-----
man/Gasoline.Rd | 18 +++++++++-
man/Glucose.Rd | 5 +-
man/Glucose2.Rd | 8 ++--
man/Gun.Rd | 5 --
man/IGF.Rd | 1
man/Machines.Rd | 1
man/MathAchSchool.Rd | 3 -
man/MathAchieve.Rd | 3 -
man/Meat.Rd | 1
man/Milk.Rd | 1
man/Muscle.Rd | 1
man/Nitrendipene.Rd | 4 --
man/Oats.Rd | 1
man/Orange.Rd |only
man/Orthodont.Rd | 1
man/Ovary.Rd | 1
man/Oxide.Rd | 1
man/PBG.Rd | 1
man/Phenobarb.Rd | 1
man/Pixel.Rd | 8 ----
man/Quinidine.Rd | 1
man/Rail.Rd | 1
man/RatPupWeight.Rd | 12 +-----
man/Relaxin.Rd | 3 -
man/Remifentanil.Rd | 3 -
man/Soybean.Rd | 1
man/Spruce.Rd | 1
man/Tetracycline1.Rd | 3 -
man/Tetracycline2.Rd | 3 -
man/Theoph.Rd |only
man/Wafer.Rd | 3 -
man/Wheat.Rd | 3 -
man/Wheat2.Rd | 3 -
man/ergoStool.Rd | 12 ++----
tests/Pixel.R | 5 ++
tests/Pixel.Rout.save | 85 ++++++++++++++++++++++++++++++++++++++++---------
87 files changed, 153 insertions(+), 162 deletions(-)
Author: Jonathan M. Lees
Title: Topographic and Geologic Mapping
Description: Set of routines for making Map Projections (forward and inverse), Topographic Maps, Perspective plots, Geological Maps, geological map symbols, geological databases, interactive plotting and selection of focus regions.
Diff between GEOmap versions 1.0-8 dated 2008-04-16 and 1.0-9 dated 2008-06-26
DESCRIPTION | 4 +-- R/GEOTOPO.R | 2 - R/GETXprofile.R | 2 - R/XSECEQ.R | 8 ++++--- R/boundGEOmap.R | 27 +++++++++++++++++------- R/insertNA.R | 15 ++++++++----- R/insertvec.R |only R/plotGEOmapXY.R | 55 +++++++++++++++++++++++++++++++++++++------------- demo/weathermap.R | 3 +- inst/doc/GEOmap.pdf |binary man/BASICTOPOMAP.Rd | 5 +--- man/GEOTOPO.Rd | 23 ++++++++++++++++++-- man/GEOmap-package.Rd | 2 - man/Markup.Rd | 3 -- man/NSWath.Rd | 2 - man/OverTurned.Rd | 2 - man/SETPOLIMAP.Rd | 2 - man/XSECDEM.Rd | 2 - man/XSECwin.Rd | 3 +- man/bcars.Rd | 2 - man/geoLEGEND.Rd | 2 - man/getmem.Rd | 2 - man/insertNA.Rd | 3 -- man/insertvec.Rd |only man/inside.Rd | 3 -- man/lcgc.Rd | 3 -- man/utm.sphr.ll.Rd | 3 -- man/utm.sphr.xy.Rd | 3 -- 28 files changed, 115 insertions(+), 66 deletions(-)