Title: Tools: moving window statistics, GIF, Base64, ROC AUC, etc.
Description: Contains several basic utility functions including: moving (rolling, running) window statistic functions, read/write for GIF and ENVI binary files, fast calculation of AUC, LogitBoost classifier, base64 encoder/decoder, round-off error free sum and cumsum, etc.
Diff between caTools versions 1.8 dated 2007-10-09 and 1.9 dated 2008-07-07
CHANGES | 7 +++++-- DESCRIPTION | 8 ++++---- R/zzz.R | 6 +++--- 3 files changed, 12 insertions(+), 9 deletions(-)
More information about caTools at CRAN
posted at: 13:16 | path: /cran/updated | permanent link to this entry
Package RJaCGH updated to version 1.5.4 with previous version 1.5.3 dated 2008-07-05
Author: Oscar Rueda
Diff between RJaCGH versions 1.5.3 dated 2008-07-05 and 1.5.4 dated 2008-07-07
More information about RJaCGH at CRAN
Package QRMlib updated to version 1.4.3 with previous version 1.4.2 dated 2007-11-17 Author: Alexander McNeil for S-Plus original; R port by Scott Ulman
Diff between QRMlib versions 1.4.2 dated 2007-11-17 and 1.4.3 dated 2008-07-07
More information about QRMlib at CRAN
New package Metabonomic with initial version 1.0
More information about Metabonomic at CRAN
Package robust updated to version 0.3-3 with previous version 0.3-2 dated 2008-07-05 Author: Jiahui Wang,
Ruben Zamar
Diff between robust versions 0.3-2 dated 2008-07-05 and 0.3-3 dated 2008-07-07
More information about robust at CRAN
Package rattle updated to version 2.3.46 with previous version 2.3.45 dated 2008-07-05 Author: Graham Williams
Diff between rattle versions 2.3.45 dated 2008-07-05 and 2.3.46 dated 2008-07-07
More information about rattle at CRAN
New package icomp with initial version 0.1
More information about icomp at CRAN
Package hwriter updated to version 0.92 with previous version 0.91 dated 2008-05-05 Author: Gregoire Pau
Diff between hwriter versions 0.91 dated 2008-05-05 and 0.92 dated 2008-07-07
More information about hwriter at CRAN
New package fuzzyOP with initial version 1.0
More information about fuzzyOP at CRAN
Package fdrtool updated to version 1.2.5 with previous version 1.2.4 dated 2008-03-05 Author: Korbinian Strimmer.
Diff between fdrtool versions 1.2.4 dated 2008-03-05 and 1.2.5 dated 2008-07-07
More information about fdrtool at CRAN
Package TSA updated to version 0.96 with previous version 0.94 dated 2008-02-12 Author: Kung-Sik Chan
Diff between TSA versions 0.94 dated 2008-02-12 and 0.96 dated 2008-07-07
More information about TSA at CRAN
Package LogConcDEAD updated to version 1.2-0 with previous version 1.1-2 dated 2008-06-19 Author: Madeleine Cule, Robert Gramacy, Richard Samworth
Diff between LogConcDEAD versions 1.1-2 dated 2008-06-19 and 1.2-0 dated 2008-07-07
More information about LogConcDEAD at CRAN
New package CADStat with initial version 2.1-06
More information about CADStat at CRAN
New package HAPim with initial version 1.0
More information about HAPim at CRAN
Title: Reversible Jump MCMC for the analysis of CGH arrays.
Description: Bayesian analysis of CGH microarrays fitting Hidden Markov Chain models.
The selection of the number of states is made via their posterior probability
computed by Reversible Jump Markov Chain Monte Carlo Methods. Also
returns probabilistic common regions for gains/losses.
Changes | 3 +
DESCRIPTION | 6 +--
R/RJaCGH.R | 30 +++++++++---------
README.RJaCGH | 3 +
README.zlib |only
README.zlib.in.RJaCGH | 8 +++-
inst/doc/Implementing_pREC_in_C.pdf |binary
src/nnhl.c | 58 ++++++++++++++++++------------------
8 files changed, 57 insertions(+), 51 deletions(-)
posted at: 13:16 | path: /cran/updated | permanent link to this entry
Title: Provides R-language code to examine Quantitative Risk Management concepts
Description: This is a free R-language library designed to accompany the book
Quantitative Risk Management: Concepts, Techniques and Tools by Alexander
J. McNeil, Rudiger Frey and Paul Embrechts. A separate SPlus version can be
downloaded from Alexander McNeil's URL at
http://www.ma.hw.ac.uk/~mcneil/book/QRMlib.html
DESCRIPTION | 8
R/functionsEVT.R | 19
R/functionsUtility.R | 62
inst/Chap8/S3-Statistics.R | 18
inst/Docs/QRMlib.pdf | 6006 ++++++++++++++++++++----------------------
inst/README.txt | 29
man/0-QRMlib-package.Rd | 10
man/1-BldQRMBookWorkspace.Rd | 14
man/3-ProfileLoadLibrary.Rd | 5
src/gsl/gsl_math.h | 43
src/gsl/gsl_mode.h | 22
src/gsl/gsl_pow_int.h | 53
src/gsl/specfunc/gsl_sf_exp.h | 19
src/gsl/specfunc/gsl_sf_log.h | 22
14 files changed, 3225 insertions(+), 3105 deletions(-)
posted at: 13:16 | path: /cran/updated | permanent link to this entry
Package: Metabonomic
Type: Package
Title: GUI for Metabonomic Analysis
Version: 1.0
Date: 2008-07-07
Author: Jose L. Izquierdo
Maintainer: Jose L. Izquierdo
Description: Graphical User Interface for the Metabonomic Analysis (Baseline, Normalization, Peak Detection,
PCA, PLS, Nearest Neigbourgt, Neural Network) developed to make easy this data analysis.
License: GPL version 2 or newer
Depends: tcltk, tcltk2, tkrplot, robustbase, mvoutlier, MASS, gpls, pls, splines, class, nnet, AMORE,
neural, caMassClass, clusterSim, hddplot, scatterplot3d, relimp
Packaged: Mon Jul 7 18:31:53 2008; Jose
posted at: 13:16 | path: /cran/new | permanent link to this entry
Title: Insightful Robust Library
Description: A package of robust methods.
DESCRIPTION | 14
R/anova.glmRob.q | 2
R/anova.glmRoblist.q | 8
R/anova.lmRob.q | 3
R/covRob.q | 22
R/donostah.q | 52
R/fastcov.q | 5
R/glmRob.cubif.q | 6
R/glmRob.glmdev.q | 2
R/glmRob.mallows.q | 7
R/glmRob.q | 2
R/lmRob.effvy.q | 3
R/lmRob.fit.compute.q | 25
R/lmRob.q | 2
R/lmfmResQQPlot.q | 4
R/lmfmRespVsFittedPlot.q | 2
R/rb.q | 2
R/step.lmRob.q | 4
R/test.lmRob.q | 10
build/robust.build/robust.pbxindex/cdecls.pbxbtree |binary
build/robust.build/robust.pbxindex/decls.pbxbtree |binary
build/robust.build/robust.pbxindex/files.pbxbtree |binary
build/robust.build/robust.pbxindex/imports.pbxbtree |binary
build/robust.build/robust.pbxindex/pbxindex.header |binary
build/robust.build/robust.pbxindex/refs.pbxbtree |binary
build/robust.build/robust.pbxindex/strings.pbxstrings/control |binary
build/robust.build/robust.pbxindex/strings.pbxstrings/strings |binary
build/robust.build/robust.pbxindex/symbols0.pbxsymbols |binary
man/anova.glmRob.Rd | 12
man/donostah.Rd | 8
man/fastcov.Rd | 2
man/undocumented.glmRob.Rd | 2
robust.xcodeproj/konis.mode1v3 | 141 -
robust.xcodeproj/konis.pbxuser | 1213 ++++++----
robust.xcodeproj/project.pbxproj | 6
35 files changed, 1015 insertions(+), 544 deletions(-)
posted at: 09:16 | path: /cran/updated | permanent link to this entry
Title: A graphical user interface for data mining in R using GTK
Description: Rattle provides a Gnome (RGtk2) based interface to
R functionality for data mining. The aim is to provide
a simple and intuitive interface that allows a user to quickly
load data from a CSV file (or via ODBC), transform and explore the data,
and build and evaluate models, and export models as PMML (predictive
modelling markup language). All of this with knowing little about R.
All R commands are logged and available for the user, as a tool to
then begin interacting directly with R itself, if so desired. Rattle also
exports a number of utility functions and the graphical user interface does
not need to be run to deploy these.
DESCRIPTION | 6 +-
R/data.R | 23 +++++---
R/rattle.R | 133 +++++++++++++++++++++++++++++++++++++-------------
inst/etc/rattle.glade | 17 ++++--
man/RStat.Rd | 4 +
man/internal.Rd | 102 +++++++++++++++++++-------------------
man/rattle.Rd | 3 -
7 files changed, 187 insertions(+), 101 deletions(-)
posted at: 09:16 | path: /cran/updated | permanent link to this entry
Package: icomp
Type: Package
Title: ICOMP criterion
Version: 0.1
Date: 2008-07-03
Author: Jake Ferguson
Maintainer: Jake Ferguson
Description: Calculates the ICOMP criterion and its variations
License: GPL (>= 2)
URL: http://taper-linux.msu.montana.edu/
Packaged: Mon Jul 7 14:45:08 2008; hornik
posted at: 09:16 | path: /cran/new | permanent link to this entry
Title: HTML Writer - Outputs R objects in HTML format
Description: Easy-to-use and versatile functions to output R objects in HTML format
hwriter-0.91/hwriter/data |only
hwriter-0.91/hwriter/man/irisimages.Rd |only
hwriter-0.92/hwriter/DESCRIPTION | 6 -
hwriter-0.92/hwriter/R/example.R | 74 ++++++-------
hwriter-0.92/hwriter/R/hwriter.R | 26 ++--
hwriter-0.92/hwriter/R/page.R | 6 -
hwriter-0.92/hwriter/R/table.R | 8 -
hwriter-0.92/hwriter/build.sh | 9 -
hwriter-0.92/hwriter/inst/doc/.nfs000000008f964cb400000104 |only
hwriter-0.92/hwriter/inst/doc/hwriter.Rnw | 20 ---
hwriter-0.92/hwriter/inst/doc/hwriter.pdf |binary
hwriter-0.92/hwriter/inst/images |only
hwriter-0.92/hwriter/man/hmakeTag.Rd | 2
hwriter-0.92/hwriter/man/hwrite.Rd | 11 +
hwriter-0.92/hwriter/man/hwriteImage.Rd | 7 -
hwriter-0.92/hwriter/man/hwriter-package.Rd | 2
hwriter-0.92/hwriter/man/openPage.Rd | 19 ++-
17 files changed, 95 insertions(+), 95 deletions(-)
posted at: 09:16 | path: /cran/updated | permanent link to this entry
Package: fuzzyOP
Type: Package
Title: Fuzzy numbers and the main mathematical operations
Version: 1.0
Date: 2008-06-15
Author: Aklan Semagul, Altindas Emine, Macit Rabiye, Umar Senay, Unal Hatice
Maintainer: Aklan Semagul, Altindas Emine, Macit Rabiye, Umar Senay, Unal Hatice
Description: This package contains functions which allow the depiction of fuzzy numbers.
Besides, the main arithmetic operations are applied to fuzzy numbers and the
extension principle for continuous functions can be applied and plotted.
License: GPL (>= 2)
Packaged: Mon Jul 7 14:51:40 2008; hornik
posted at: 09:16 | path: /cran/new | permanent link to this entry
Title: Estimation and Control of (Local) False Discovery Rates
Description: This package allows to estimate both tail area-based false
discovery rates (Fdr) as well as local false discovery rates (fdr) for a
variety of null models (p-values, z-scores, correlation coefficients,
t-scores). The proportion of null values and the parameters of the null
distribution are adaptively estimated from the data. In addition, the package
contains functions for non-parametric density estimation (Grenander estimator),
for monotone regression (isotonic regression and antitonic regression with weights),
for computing the greatest convex minorant (GCM) and the least concave majorant (LCM),
and for the half-normal and correlation distributions.
CHANGES | 10 ++++++++++
DESCRIPTION | 8 ++++----
R/censored.fit.R | 13 ++++++++++---
R/nullmodel.R | 6 +++---
R/pval.estimate.eta0.R | 6 +++---
man/fdrtool.Rd | 3 ++-
6 files changed, 32 insertions(+), 14 deletions(-)
posted at: 09:16 | path: /cran/updated | permanent link to this entry
Title: Time Series Analysis
Description: Contains R functions and datasets detailed in the book
"Time Series Analysis with Applications in R (second edition)" by Jonathan Cryer and Kung-Sik Chan
DESCRIPTION | 8 +--
R/arima.R | 30 +++++++-------
R/arimax.R | 30 +++++++-------
R/armasubsets.R | 90 +++++++++++++-------------------------------
R/periodogram.R | 20 +++++----
R/plot.Arima.R | 107 +++++++++++++++++++++++++----------------------------
R/season.R | 4 -
R/tsdiag.Arima.R | 2
changes |only
man/TSA-package.Rd | 4 -
man/arima.Rd | 11 +++--
man/arimax.Rd | 9 ++--
man/armasubsets.Rd | 2
man/gBox.Rd | 2
man/plot.Arima.Rd | 42 +++++++++++++++++---
15 files changed, 180 insertions(+), 181 deletions(-)
posted at: 09:16 | path: /cran/updated | permanent link to this entry
Title: Maximum likelihood estimation of a log-concave density
Description: Computes the maximum likelihood estimator from an i.i.d. sample of data from a log-concave density in any number of dimensions. Plots are available for 1- and 2-d data.
LogConcDEAD-1.1-2/LogConcDEAD/.cvsignore |only
LogConcDEAD-1.2-0/LogConcDEAD/ChangeLog | 6
LogConcDEAD-1.2-0/LogConcDEAD/DESCRIPTION | 8
LogConcDEAD-1.2-0/LogConcDEAD/R/lcd.eval.R | 145 ++---------
LogConcDEAD-1.2-0/LogConcDEAD/R/lcd.getweights.R |only
LogConcDEAD-1.2-0/LogConcDEAD/R/lcd.interp.R | 2
LogConcDEAD-1.2-0/LogConcDEAD/R/lcd.marg.R |only
LogConcDEAD-1.2-0/LogConcDEAD/R/lcd.mle.R | 25 +
LogConcDEAD-1.2-0/LogConcDEAD/R/lcd.sample.R | 2
LogConcDEAD-1.2-0/LogConcDEAD/R/plot.LogConcDEAD.R | 178 +++++++-------
LogConcDEAD-1.2-0/LogConcDEAD/R/print.LogConcDEAD.R | 13 -
LogConcDEAD-1.2-0/LogConcDEAD/man/LogConcDEAD-internal.Rd | 15 -
LogConcDEAD-1.2-0/LogConcDEAD/man/lcd.eval.Rd | 8
LogConcDEAD-1.2-0/LogConcDEAD/man/lcd.getweights.Rd |only
LogConcDEAD-1.2-0/LogConcDEAD/man/lcd.interp.Rd | 8
LogConcDEAD-1.2-0/LogConcDEAD/man/lcd.marg.Rd | 31 +-
LogConcDEAD-1.2-0/LogConcDEAD/man/lcd.marg.eval.Rd |only
LogConcDEAD-1.2-0/LogConcDEAD/man/lcd.mle.Rd | 5
LogConcDEAD-1.2-0/LogConcDEAD/man/plot.LogConcDEAD.Rd | 12
LogConcDEAD-1.2-0/LogConcDEAD/src/solvoptweights.c | 6
20 files changed, 203 insertions(+), 261 deletions(-)
posted at: 09:16 | path: /cran/updated | permanent link to this entry
Package: CADStat
Version: 2.1-06
Date: 2008-07-06
Title: Provides a GUI to several statistical methods for biological inferences
Author: Lester Yuan, Tom Stockton, Doug Bronson, Pasha Minallah, and Mark Fitzgerald
Maintainer: Lester Yuan
Depends: JGR, XML, lattice, bio.infer, gdata, gmodels, car, MASS, quantreg, rpart
Description: Using JGR, provides a GUI to several statistical methods -
scatterplot, boxplot, linear regression, generalized linear regression, quantile,
regression, conditional probability calculations,
and regression trees.
License: GPL Version 2 or newer
URL: http://www.rforge.net/CADStat/
Packaged: Sun Jul 6 21:38:23 2008; Lester
posted at: 09:16 | path: /cran/new | permanent link to this entry
Package: HAPim
Type: Package
Title: HapIM
Version: 1.0
Date: 2008-07-01
Author: S.Dejean, N.Oumouhou, D.Estivals, B.Mangin
Maintainer: Brigitte Mangin
Description: The package provides a set of functions whose aim is to propose 4 methods of QTL detection and fine mapping.HAPIM LD is an interval-mapping method designed for unrelated individuals with no family information and is based on a maximum-likelihood calculation.HAPIM LDL is an interval-mapping method which uses family information of individuals and combines linkage and linkage disequilibrium.It is based on a maximum-likelihood calculation.HAPLOMAX gives an analysis of variance with a sire effect and a haplotype effect. HAPLOMAX HS gives an analysis of variance with a sire effect and a haplotype effect in half-sire design.
License: GPL
Packaged: Mon Jul 7 09:15:08 2008; sdejean
posted at: 09:16 | path: /cran/new | permanent link to this entry