Author: Zahra Montazeri , David R. Bickel
Bundle: empiricalBayes
Contains: HighProbability localFDR
Diff between empiricalBayes versions 2.0 dated 2008-05-07 and 2.1 dated 2008-07-07
empiricalBayes-2.0/empiricalBayes/0402049v1.pdf |only empiricalBayes-2.1/empiricalBayes/DESCRIPTION | 9 +++++---- empiricalBayes-2.1/empiricalBayes/HighProbability/DESCRIPTION.in | 4 +--- empiricalBayes-2.1/empiricalBayes/HighProbability/man/HighProbability.Rd | 3 +-- empiricalBayes-2.1/empiricalBayes/HighProbability/man/HighProbability2.Rd | 3 +-- empiricalBayes-2.1/empiricalBayes/HighProbability/man/alternative.Rd | 5 ++--- empiricalBayes-2.1/empiricalBayes/HighProbability/man/marginal.probability.Rd | 3 +-- empiricalBayes-2.1/empiricalBayes/localFDR/man/empirical1.Rd | 4 ++-- empiricalBayes-2.1/empiricalBayes/localFDR/man/empirical2.Rd | 4 ++-- empiricalBayes-2.1/empiricalBayes/localFDR/man/find.alternative.prob.threshold.Rd | 6 +++--- empiricalBayes-2.1/empiricalBayes/localFDR/man/localFDR1.Rd | 6 +++--- empiricalBayes-2.1/empiricalBayes/localFDR/man/priorFDR.Rd | 6 +++--- 12 files changed, 24 insertions(+), 29 deletions(-)
More information about empiricalBayes at CRAN
Permanent link
Author: Jarek Tuszynski
Diff between caTools versions 1.8 dated 2007-10-09 and 1.9 dated 2008-07-07
Title: Tools: moving window statistics, GIF, Base64, ROC AUC, etc.
Description: Contains several basic utility functions including:
moving (rolling, running) window statistic functions, read/write for GIF
and ENVI binary files, fast calculation of AUC, LogitBoost classifier, base64
encoder/decoder, round-off error free sum and cumsum, etc.
CHANGES | 7 +++++--
DESCRIPTION | 8 ++++----
R/zzz.R | 6 +++---
3 files changed, 12 insertions(+), 9 deletions(-)
Author: Oscar Rueda
Diff between RJaCGH versions 1.5.3 dated 2008-07-05 and 1.5.4 dated 2008-07-07
Title: Reversible Jump MCMC for the analysis of CGH arrays.
Description: Bayesian analysis of CGH microarrays fitting Hidden Markov Chain models.
The selection of the number of states is made via their posterior probability
computed by Reversible Jump Markov Chain Monte Carlo Methods. Also
returns probabilistic common regions for gains/losses.
Changes | 3 +
DESCRIPTION | 6 +--
R/RJaCGH.R | 30 +++++++++---------
README.RJaCGH | 3 +
README.zlib |only
README.zlib.in.RJaCGH | 8 +++-
inst/doc/Implementing_pREC_in_C.pdf |binary
src/nnhl.c | 58 ++++++++++++++++++------------------
8 files changed, 57 insertions(+), 51 deletions(-)
Author: Alexander McNeil for S-Plus original; R port by Scott Ulman
Title: Provides R-language code to examine Quantitative Risk Management concepts
Description: This is a free R-language library designed to accompany the book
Quantitative Risk Management: Concepts, Techniques and Tools by Alexander
J. McNeil, Rudiger Frey and Paul Embrechts. A separate SPlus version can be
downloaded from Alexander McNeil's URL at
http://www.ma.hw.ac.uk/~mcneil/book/QRMlib.html
Diff between QRMlib versions 1.4.2 dated 2007-11-17 and 1.4.3 dated 2008-07-07
DESCRIPTION | 8 R/functionsEVT.R | 19 R/functionsUtility.R | 62 inst/Chap8/S3-Statistics.R | 18 inst/Docs/QRMlib.pdf | 6006 ++++++++++++++++++++---------------------- inst/README.txt | 29 man/0-QRMlib-package.Rd | 10 man/1-BldQRMBookWorkspace.Rd | 14 man/3-ProfileLoadLibrary.Rd | 5 src/gsl/gsl_math.h | 43 src/gsl/gsl_mode.h | 22 src/gsl/gsl_pow_int.h | 53 src/gsl/specfunc/gsl_sf_exp.h | 19 src/gsl/specfunc/gsl_sf_log.h | 22 14 files changed, 3225 insertions(+), 3105 deletions(-)
Author: Jiahui Wang,
Ruben Zamar
Diff between robust versions 0.3-2 dated 2008-07-05 and 0.3-3 dated 2008-07-07
Title: Insightful Robust Library
Description: A package of robust methods.
DESCRIPTION | 14
R/anova.glmRob.q | 2
R/anova.glmRoblist.q | 8
R/anova.lmRob.q | 3
R/covRob.q | 22
R/donostah.q | 52
R/fastcov.q | 5
R/glmRob.cubif.q | 6
R/glmRob.glmdev.q | 2
R/glmRob.mallows.q | 7
R/glmRob.q | 2
R/lmRob.effvy.q | 3
R/lmRob.fit.compute.q | 25
R/lmRob.q | 2
R/lmfmResQQPlot.q | 4
R/lmfmRespVsFittedPlot.q | 2
R/rb.q | 2
R/step.lmRob.q | 4
R/test.lmRob.q | 10
build/robust.build/robust.pbxindex/cdecls.pbxbtree |binary
build/robust.build/robust.pbxindex/decls.pbxbtree |binary
build/robust.build/robust.pbxindex/files.pbxbtree |binary
build/robust.build/robust.pbxindex/imports.pbxbtree |binary
build/robust.build/robust.pbxindex/pbxindex.header |binary
build/robust.build/robust.pbxindex/refs.pbxbtree |binary
build/robust.build/robust.pbxindex/strings.pbxstrings/control |binary
build/robust.build/robust.pbxindex/strings.pbxstrings/strings |binary
build/robust.build/robust.pbxindex/symbols0.pbxsymbols |binary
man/anova.glmRob.Rd | 12
man/donostah.Rd | 8
man/fastcov.Rd | 2
man/undocumented.glmRob.Rd | 2
robust.xcodeproj/konis.mode1v3 | 141 -
robust.xcodeproj/konis.pbxuser | 1213 ++++++----
robust.xcodeproj/project.pbxproj | 6
35 files changed, 1015 insertions(+), 544 deletions(-)
Author: Graham Williams
Diff between rattle versions 2.3.45 dated 2008-07-05 and 2.3.46 dated 2008-07-07
Title: A graphical user interface for data mining in R using GTK
Description: Rattle provides a Gnome (RGtk2) based interface to
R functionality for data mining. The aim is to provide
a simple and intuitive interface that allows a user to quickly
load data from a CSV file (or via ODBC), transform and explore the data,
and build and evaluate models, and export models as PMML (predictive
modelling markup language). All of this with knowing little about R.
All R commands are logged and available for the user, as a tool to
then begin interacting directly with R itself, if so desired. Rattle also
exports a number of utility functions and the graphical user interface does
not need to be run to deploy these.
DESCRIPTION | 6 +-
R/data.R | 23 +++++---
R/rattle.R | 133 +++++++++++++++++++++++++++++++++++++-------------
inst/etc/rattle.glade | 17 ++++--
man/RStat.Rd | 4 +
man/internal.Rd | 102 +++++++++++++++++++-------------------
man/rattle.Rd | 3 -
7 files changed, 187 insertions(+), 101 deletions(-)
Author: Gregoire Pau
Title: HTML Writer - Outputs R objects in HTML format
Description: Easy-to-use and versatile functions to output R objects in HTML format
Diff between hwriter versions 0.91 dated 2008-05-05 and 0.92 dated 2008-07-07
hwriter-0.91/hwriter/data |only hwriter-0.91/hwriter/man/irisimages.Rd |only hwriter-0.92/hwriter/DESCRIPTION | 6 - hwriter-0.92/hwriter/R/example.R | 74 ++++++------- hwriter-0.92/hwriter/R/hwriter.R | 26 ++-- hwriter-0.92/hwriter/R/page.R | 6 - hwriter-0.92/hwriter/R/table.R | 8 - hwriter-0.92/hwriter/build.sh | 9 - hwriter-0.92/hwriter/inst/doc/.nfs000000008f964cb400000104 |only hwriter-0.92/hwriter/inst/doc/hwriter.Rnw | 20 --- hwriter-0.92/hwriter/inst/doc/hwriter.pdf |binary hwriter-0.92/hwriter/inst/images |only hwriter-0.92/hwriter/man/hmakeTag.Rd | 2 hwriter-0.92/hwriter/man/hwrite.Rd | 11 + hwriter-0.92/hwriter/man/hwriteImage.Rd | 7 - hwriter-0.92/hwriter/man/hwriter-package.Rd | 2 hwriter-0.92/hwriter/man/openPage.Rd | 19 ++- 17 files changed, 95 insertions(+), 95 deletions(-)
Author: Korbinian Strimmer.
Title: Estimation and Control of (Local) False Discovery Rates
Description: This package allows to estimate both tail area-based false
discovery rates (Fdr) as well as local false discovery rates (fdr) for a
variety of null models (p-values, z-scores, correlation coefficients,
t-scores). The proportion of null values and the parameters of the null
distribution are adaptively estimated from the data. In addition, the package
contains functions for non-parametric density estimation (Grenander estimator),
for monotone regression (isotonic regression and antitonic regression with weights),
for computing the greatest convex minorant (GCM) and the least concave majorant (LCM),
and for the half-normal and correlation distributions.
Diff between fdrtool versions 1.2.4 dated 2008-03-05 and 1.2.5 dated 2008-07-07
CHANGES | 10 ++++++++++ DESCRIPTION | 8 ++++---- R/censored.fit.R | 13 ++++++++++--- R/nullmodel.R | 6 +++--- R/pval.estimate.eta0.R | 6 +++--- man/fdrtool.Rd | 3 ++- 6 files changed, 32 insertions(+), 14 deletions(-)
Author: Kung-Sik Chan
Title: Time Series Analysis
Description: Contains R functions and datasets detailed in the book
"Time Series Analysis with Applications in R (second edition)" by Jonathan Cryer and Kung-Sik Chan
Diff between TSA versions 0.94 dated 2008-02-12 and 0.96 dated 2008-07-07
DESCRIPTION | 8 +-- R/arima.R | 30 +++++++------- R/arimax.R | 30 +++++++------- R/armasubsets.R | 90 +++++++++++++------------------------------- R/periodogram.R | 20 +++++---- R/plot.Arima.R | 107 +++++++++++++++++++++++++---------------------------- R/season.R | 4 - R/tsdiag.Arima.R | 2 changes |only man/TSA-package.Rd | 4 - man/arima.Rd | 11 +++-- man/arimax.Rd | 9 ++-- man/armasubsets.Rd | 2 man/gBox.Rd | 2 man/plot.Arima.Rd | 42 +++++++++++++++++--- 15 files changed, 180 insertions(+), 181 deletions(-)
Author: Madeleine Cule, Robert Gramacy, Richard Samworth
Title: Maximum likelihood estimation of a log-concave density
Description: Computes the maximum likelihood estimator from an i.i.d. sample of data from a log-concave density in any number of dimensions. Plots are available for 1- and 2-d data.
Diff between LogConcDEAD versions 1.1-2 dated 2008-06-19 and 1.2-0 dated 2008-07-07
LogConcDEAD-1.1-2/LogConcDEAD/.cvsignore |only LogConcDEAD-1.2-0/LogConcDEAD/ChangeLog | 6 LogConcDEAD-1.2-0/LogConcDEAD/DESCRIPTION | 8 LogConcDEAD-1.2-0/LogConcDEAD/R/lcd.eval.R | 145 ++--------- LogConcDEAD-1.2-0/LogConcDEAD/R/lcd.getweights.R |only LogConcDEAD-1.2-0/LogConcDEAD/R/lcd.interp.R | 2 LogConcDEAD-1.2-0/LogConcDEAD/R/lcd.marg.R |only LogConcDEAD-1.2-0/LogConcDEAD/R/lcd.mle.R | 25 + LogConcDEAD-1.2-0/LogConcDEAD/R/lcd.sample.R | 2 LogConcDEAD-1.2-0/LogConcDEAD/R/plot.LogConcDEAD.R | 178 +++++++------- LogConcDEAD-1.2-0/LogConcDEAD/R/print.LogConcDEAD.R | 13 - LogConcDEAD-1.2-0/LogConcDEAD/man/LogConcDEAD-internal.Rd | 15 - LogConcDEAD-1.2-0/LogConcDEAD/man/lcd.eval.Rd | 8 LogConcDEAD-1.2-0/LogConcDEAD/man/lcd.getweights.Rd |only LogConcDEAD-1.2-0/LogConcDEAD/man/lcd.interp.Rd | 8 LogConcDEAD-1.2-0/LogConcDEAD/man/lcd.marg.Rd | 31 +- LogConcDEAD-1.2-0/LogConcDEAD/man/lcd.marg.eval.Rd |only LogConcDEAD-1.2-0/LogConcDEAD/man/lcd.mle.Rd | 5 LogConcDEAD-1.2-0/LogConcDEAD/man/plot.LogConcDEAD.Rd | 12 LogConcDEAD-1.2-0/LogConcDEAD/src/solvoptweights.c | 6 20 files changed, 203 insertions(+), 261 deletions(-)