CRANberries

Tue, 15 Jul 2008

New package peperr with initial version 1.0
Package: peperr
Type: Package
Title: Parallelised Estimation of Prediction Error
Version: 1.0
Date: 2008-06-03
Depends: snowfall
Suggests: CoxBoost, locfit, survival, penalized
Author: Christine Porzelius, Harald Binder
Maintainer: Christine Porzelius
Description: Package peperr is designed for prediction error estimation through resampling techniques, possibly accelerated by parallel execution on a compute cluster. Newly developed model fitting routines can be easily incorporated.
License: GPL (>=2)
Packaged: Tue Jul 15 21:24:12 2008; hornik

More information about peperr at CRAN

posted at: 17:16 | path: /cran/new | permanent link to this entry

Package laercio updated to version 0.9-4 with previous version 0.9-3 dated 2008-07-05

Author: Laercio Junio da Silva
Title: Duncan test, Tukey test and Scott-Knott test.
Description: The package contains functions to compare and group means.

Diff between laercio versions 0.9-3 dated 2008-07-05 and 0.9-4 dated 2008-07-15

 DESCRIPTION            |    6 +++---
 R/LScottKnott.aov.r    |   34 +++++++++++++++++-----------------
 man/laercio-package.Rd |    4 ++--
 3 files changed, 22 insertions(+), 22 deletions(-)

More information about laercio at CRAN

posted at: 17:16 | path: /cran/updated | permanent link to this entry

Package ic.infer updated to version 0.8 with previous version 0.7 dated 2008-07-14

Author: Ulrike Groemping
Title: Inequality constrained inference in linear normal situations
Description: This package implements parameter estimation in normal (linear) models under linear equality and inequality constraints and implements normal likelihood ratio tests involving inequality-constrained hypotheses. For inequality-constrained linear models, averaging over R-squared for different orderings of regressors is also included.

Diff between ic.infer versions 0.7 dated 2008-07-14 and 0.8 dated 2008-07-15

 ic.infer-0.7/ic.infer/COPYING          |only
 ic.infer-0.7/ic.infer/COPYRIGHT        |only
 ic.infer-0.8/ic.infer/DESCRIPTION      |   10 ++++-----
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 ic.infer-0.8/ic.infer/R/all.R2.R       |only
 ic.infer-0.8/ic.infer/R/ic.test.R      |    7 +++++-
 ic.infer-0.8/ic.infer/R/ic.weights.R   |   34 +++++++++++++++++++++++----------
 ic.infer-0.8/ic.infer/R/or.relimp.R    |only
 ic.infer-0.8/ic.infer/R/summary.orlm.R |    9 +++++++-
 ic.infer-0.8/ic.infer/inst             |only
 ic.infer-0.8/ic.infer/man/or.relimp.rd |only
 ic.infer-0.8/ic.infer/man/orlm.rd      |   13 +++++++-----
 13 files changed, 52 insertions(+), 23 deletions(-)

More information about ic.infer at CRAN

posted at: 17:16 | path: /cran/updated | permanent link to this entry

New package etm with initial version 0.3-2
Package: etm
Title: Empirical Transition Matrix
Version: 0.3-2
Author: Arthur Allignol
Description: Matrix of transition probabilities for any time-inhomogeneous multistate model with finite state space
Maintainer: Arthur Allignol
License: GPL (>=2)
Depends: lattice
date: 2008/7/15
Packaged: Tue Jul 15 19:46:19 2008; arthur

More information about etm at CRAN

posted at: 17:16 | path: /cran/new | permanent link to this entry

Package arm updated to version 1.1-11 with previous version 1.1-10 dated 2008-07-11

Author: Andrew Gelman , Yu-Sung Su , Masanao Yajima , Jennifer Hill , Maria Grazia Pittau , Jouni Kerman and Tian Zheng
Title: Data Analysis Using Regression and Multilevel/Hierarchical Models
Description: R functions for processing lm, glm, mer and polr outputs.

Diff between arm versions 1.1-10 dated 2008-07-11 and 1.1-11 dated 2008-07-15

 CHANGELOG       |    5 +++
 DESCRIPTION     |   10 +++---
 R/coefplot.R    |   82 ++++++++++++++++++++++++++++++++++++--------------------
 man/coefplot.Rd |   21 +++++---------
 4 files changed, 72 insertions(+), 46 deletions(-)

More information about arm at CRAN

posted at: 17:16 | path: /cran/updated | permanent link to this entry

Package wgaim updated to version 0.1-2 with previous version 0.1-1 dated 2008-07-05

Author: Julian Taylor , Simon Diffey , Ari Verbyla and Brian Cullis .
Title: Whole Genome Average Interval Mapping for QTL detection using mixed models
Description: This package integrates sophisticated mixed modelling methods with a whole genome approach to detecting significant QTL's in linkage maps.

Diff between wgaim versions 0.1-1 dated 2008-07-05 and 0.1-2 dated 2008-07-15

 DESCRIPTION           |    4 ++--
 R/wgaim.R             |   41 +++++++++++++++++++++++------------------
 man/read.interval.Rd  |    2 +-
 man/wgaim-internal.Rd |   11 +++++------
 4 files changed, 31 insertions(+), 27 deletions(-)

More information about wgaim at CRAN

posted at: 13:16 | path: /cran/updated | permanent link to this entry

Package sensitivity updated to version 1.4-0 with previous version 1.3-1 dated 2008-07-11

Author: Gilles Pujol
Title: Sensitivity Analysis
Description: A collection of functions for factor screening and global sensitivity analysis of model output.

Diff between sensitivity versions 1.3-1 dated 2008-07-11 and 1.4-0 dated 2008-07-15

 sensitivity-1.3-1/sensitivity/HISTORY                    |only
 sensitivity-1.3-1/sensitivity/R/fast_saltelli99.R        |only
 sensitivity-1.3-1/sensitivity/R/generic.R                |only
 sensitivity-1.3-1/sensitivity/R/plot.R                   |only
 sensitivity-1.3-1/sensitivity/R/sobol_saltelli02.R       |only
 sensitivity-1.3-1/sensitivity/R/sobol_sobol93.R          |only
 sensitivity-1.3-1/sensitivity/R/srcpcc.R                 |only
 sensitivity-1.3-1/sensitivity/TODO                       |only
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 sensitivity-1.3-1/sensitivity/man/tell.Rd                |only
 sensitivity-1.4-0/sensitivity/COPYRIGHT                  |   11 
 sensitivity-1.4-0/sensitivity/DESCRIPTION                |   22 
 sensitivity-1.4-0/sensitivity/LICENSE                    |   60 +-
 sensitivity-1.4-0/sensitivity/NAMESPACE                  |   43 +
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 sensitivity-1.4-0/sensitivity/R/bootstats.R              |   46 -
 sensitivity-1.4-0/sensitivity/R/fast99.R                 |only
 sensitivity-1.4-0/sensitivity/R/morris.R                 |  374 ++++++---------
 sensitivity-1.4-0/sensitivity/R/morris_oat.R             |only
 sensitivity-1.4-0/sensitivity/R/morris_sfd.R             |only
 sensitivity-1.4-0/sensitivity/R/morris_simplex.R         |only
 sensitivity-1.4-0/sensitivity/R/nodeplot.R               |only
 sensitivity-1.4-0/sensitivity/R/pcc.R                    |only
 sensitivity-1.4-0/sensitivity/R/sb.R                     |only
 sensitivity-1.4-0/sensitivity/R/sobol.R                  |only
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 sensitivity-1.4-0/sensitivity/R/testmodels.R             |   76 +--
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 sensitivity-1.4-0/sensitivity/man/sensitivity-package.Rd |  115 +---
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 42 files changed, 557 insertions(+), 540 deletions(-)

More information about sensitivity at CRAN

posted at: 13:16 | path: /cran/updated | permanent link to this entry

Package randomLCA updated to version 0.5-2 with previous version 0.5-1 dated 2008-07-12

Author: Ken Beath
Title: Random Effects Latent Class Analysis
Description: Fits random effects latent class models, as well as standard latent class models.

Diff between randomLCA versions 0.5-1 dated 2008-07-12 and 0.5-2 dated 2008-07-15

 DESCRIPTION                    |    6 +-
 NAMESPACE                      |    1 
 R/plot.randomLCA.R             |    9 ++++
 R/summary.randomLCA.R          |   89 +++++++++++++++++++++++------------------
 inst/NEWS                      |    6 ++
 inst/doc/randomLCA-example.Rnw |   16 ++++---
 inst/doc/randomLCA-example.pdf |binary
 7 files changed, 80 insertions(+), 47 deletions(-)

More information about randomLCA at CRAN

posted at: 13:16 | path: /cran/updated | permanent link to this entry

Package psyphy updated to version 0.0-8 with previous version 0.0-7 dated 2008-06-08

Author: Kenneth Knoblauch
Title: Functions for analyzing psychophysical data in R
Description: An assortment of functions that could be useful in analyzing data from pyschophysical experiments. It includes functions for calculating d' from several different experimental designs, links for mafc to be used with the binomial family in glm (and possibly other contexts) and self-Start functions for estimating gamma values for CRT screen calibrations.

Diff between psyphy versions 0.0-7 dated 2008-06-08 and 0.0-8 dated 2008-07-15

 DESCRIPTION          |    8 ++++----
 NAMESPACE            |    4 +++-
 R/gl.links.R         |only
 R/glm.lambda.R       |    5 ++++-
 R/psyfun.2asym.R     |only
 doc/TODO             |    2 +-
 inst/NEWS            |    9 +++++++--
 man/glm.WH.Rd        |   11 ++++-------
 man/glm.lambda.Rd    |   11 ++++-------
 man/logit.2asym.Rd   |only
 man/mafc.Rd          |    9 +++------
 man/probit.lambda.Rd |   11 ++++-------
 man/psyfun.2asym.Rd  |only
 13 files changed, 34 insertions(+), 36 deletions(-)

More information about psyphy at CRAN

posted at: 13:16 | path: /cran/updated | permanent link to this entry

Package playwith updated to version 0.9-7 with previous version 0.9-3 dated 2008-07-05

Author: Felix Andrews
Title: A GUI for interactive plots using GTK+
Description: A GTK+ graphical user interface for viewing and interacting with R plots. It tries to work out the structure of a plot, in order to interact with it. The built-in features include: zooming the data space, identifying data points, editing and annotating the plot, and saving to a file. New tools can be defined. Also includes latticist, a lattice-based tool for exploratory visualisation.

Diff between playwith versions 0.9-3 dated 2008-07-05 and 0.9-7 dated 2008-07-15

 DESCRIPTION                |   14 +--
 NAMESPACE                  |    8 ++
 R/API.R                    |   73 +++++++++++++++-----
 R/latticist.R              |only
 R/playTools_clickhandler.R |only
 R/playTools_coords.R       |   28 ++-----
 R/playTools_edit.call.R    |    2 
 R/playTools_identify.R     |  161 ++++++++++++++++++++++++++-------------------
 R/playTools_zero.R         |   27 ++++++-
 R/playTools_zoom.R         |   79 +++++++---------------
 R/playwith.R               |   40 -----------
 R/settings.R               |    3 
 inst/NEWS                  |   52 ++++++++++++++
 man/callArg.Rd             |    8 +-
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 18 files changed, 295 insertions(+), 212 deletions(-)

More information about playwith at CRAN

posted at: 13:16 | path: /cran/updated | permanent link to this entry

New package marginalmodelplots with initial version 0.3.0
Package: marginalmodelplots
Type: Package
Title: Marginal Model Plots
Version: 0.3.0
Date: 2007-07-25
Author: Andrew Redd
Maintainer: Andrew Redd
Depends: R (>= 2.0.1), locfit (>= 1.5-4), grid
Description: Marginal model plots for linear (lm) and generalized linear models (glm). Including tools for bandwidth exploration. Built on the work from the alr3 and locfit packages.
License: GPL (>= 2)
Packaged: Mon Jul 14 10:54:29 2008; aredd

More information about marginalmodelplots at CRAN

posted at: 13:16 | path: /cran/new | permanent link to this entry

Package jit updated to version 0.0-8 with previous version 0.0-7 dated 2008-06-01

Author: Stephen Milborrow
Title: Just-in-time compiler for the R language
Description: Enable just-in-time (JIT) compilation. The functions in this package are useful only under Ra and have no effect under R. See \url{http://www.milbo.users.sonic.net/ra/index.html}. This version of the jit package is for Ra 1.1.1 and higher.

Diff between jit versions 0.0-7 dated 2008-06-01 and 0.0-8 dated 2008-07-15

 DESCRIPTION |    6 +++---
 NEWS        |    2 ++
 man/jit.Rd  |    3 ++-
 3 files changed, 7 insertions(+), 4 deletions(-)

More information about jit at CRAN

posted at: 13:16 | path: /cran/updated | permanent link to this entry

Package earth updated to version 2.0-5 with previous version 2.0-4 dated 2008-07-08

Author: Stephen Milborrow derived from mda:mars by Trevor Hastie and Rob Tibshirani.
Title: Multivariate Adaptive Regression Spline Models
Description: Build regression models using the techniques in Friedman's papers "Fast MARS" and "Multivariate Adaptive Regression Splines". (The term "MARS" is copyrighted and thus not used in the name of the package.)

Diff between earth versions 2.0-4 dated 2008-07-08 and 2.0-5 dated 2008-07-15

 DESCRIPTION                         |    4 ++--
 NEWS                                |    3 +++
 man/format.earth.Rd                 |    8 ++++----
 src/tests/earth.times.bat           |    2 +-
 src/tests/test.earth.full.Rout.save |    2 +-
 src/tests/test.earthc.mak           |    2 +-
 src/tests/test.plotmo.Rout.save     |   18 ++++--------------
 7 files changed, 16 insertions(+), 23 deletions(-)

More information about earth at CRAN

posted at: 13:16 | path: /cran/updated | permanent link to this entry

Package binGroup updated to version 0.3-2 with previous version 0.3-1 dated 2007-02-11

Author: Frank Schaarschmidt
Title: Evaluation and experimental design for binomial group testing
Description: Confidence intervals and tests for a single binomial proportion. Exact and approximate methods for equal group size and exact method for designs with unequal group sizes. Exact, Score and Wald Test for standard binomial and binomial group testing for designs with equal group size. Experimental design depending on power, controlling bias and mse of the estimator depending on group size and sample size, and calculation of expected interval width.

Diff between binGroup versions 0.3-1 dated 2007-02-11 and 0.3-2 dated 2008-07-15

 DESCRIPTION            |   12 +++++++-----
 R/plot.nDesign.R       |   19 +++++++++++--------
 R/plot.sDesign.R       |   17 ++++++++++++-----
 R/print.bgtCI.R        |   10 +++++++---
 R/print.bgtTest.R      |    9 +++++++--
 R/print.binDesign.R    |    9 +++++++--
 R/print.nDesign.R      |   18 +++++++++++-------
 R/print.sDesign.R      |   13 +++++++++----
 man/bgtCI.Rd           |   16 ++++++++++------
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 man/print.sDesign.Rd   |    4 +---
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 30 files changed, 133 insertions(+), 100 deletions(-)

More information about binGroup at CRAN

posted at: 13:16 | path: /cran/updated | permanent link to this entry

New package TraMineR with initial version 1.0
Package: TraMineR
Version: 1.0
Date: 2008-07-10
Title: Sequences and trajectories mining for social scientists
Author: Alexis Gabadinho , Matthias Studer , Nicolas S. M\"{u}ller , Gilbert Ritschard .
Maintainer: Alexis Gabadinho
Depends: R (>= 2.4.0), RColorBrewer
Suggests: cluster
Description: This package is intended for sequence manipulation, description and data mining in the field of social sciences. In this field, sequences are sets of states or events describing life histories, for example family formation histories. It provides tools for translating sequences from one format to another, statistical functions for describing sequences and methods for computing distances between sequences using several metrics like optimal matching and some other metrics proposed by C. Elzinga.
License: GPL (>= 2)
URL: http://mephisto.unige.ch/traminer
Packaged: Mon Jul 14 19:07:43 2008; gabuntu

More information about TraMineR at CRAN

posted at: 13:16 | path: /cran/new | permanent link to this entry