Package popbio updated to version 1.1.9 with previous version 1.1.8 dated 2008-03-14
Author: Chris Stubben, Brook Milligan, Patrick Nantel
Title: Construction and analysis of matrix population models
Description: Construct and analyze projection matrix models from a demography study of marked individuals classified by age or stage. The package covers methods described in Matrix Population Models by Caswell (2001) and Quantitative Conservation Biology by Morris and Doak (2002).
Diff between popbio versions 1.1.8 dated 2008-03-14 and 1.1.9 dated 2008-07-16
popbio-1.1.8/popbio/data/hudcorrs.R |only popbio-1.1.8/popbio/inst/doc |only popbio-1.1.9/popbio/DESCRIPTION | 6 +-- popbio-1.1.9/popbio/R/multiresultm.R | 2 - popbio-1.1.9/popbio/R/projection.matrix.R | 11 +++-- popbio-1.1.9/popbio/R/vitalsens.R | 2 - popbio-1.1.9/popbio/data/hudcorrs.rda |only popbio-1.1.9/popbio/inst/._CITATION |only popbio-1.1.9/popbio/inst/CITATION |only popbio-1.1.9/popbio/inst/ChangeLog |only popbio-1.1.9/popbio/man/01Introduction.Rd | 7 ++- popbio-1.1.9/popbio/man/02Caswell.Rd | 9 ++++ popbio-1.1.9/popbio/man/boot.transitions.Rd | 50 ++++++++----------------- popbio-1.1.9/popbio/man/extCDF.Rd | 3 - popbio-1.1.9/popbio/man/hudcorrs.Rd | 4 -- popbio-1.1.9/popbio/man/multiresultm.Rd | 12 +++--- popbio-1.1.9/popbio/man/projection.matrix.Rd | 53 ++++++++++++--------------- popbio-1.1.9/popbio/man/teasel.Rd | 2 - popbio-1.1.9/popbio/man/test.census.Rd | 24 ++++++------ popbio-1.1.9/popbio/man/vitalsens.Rd | 6 +-- popbio-1.1.9/popbio/man/woodpecker.Rd | 4 ++ 21 files changed, 97 insertions(+), 98 deletions(-)
More information about popbio at CRAN
posted at: 17:16 | path: /cran/updated | permanent link to this entry
Package pomp updated to version 0.20-2 with previous version 0.19-1 dated 2008-05-19
Author: Aaron A. King, Edward L. Ionides, Carles Martinez Breto
Title: Partially-observed Markov processes
Description: Inference methods for partially-observed Markov processes
Diff between pomp versions 0.19-1 dated 2008-05-19 and 0.20-2 dated 2008-07-16
pomp-0.19-1/pomp/R/print-pomp.R |only pomp-0.19-1/pomp/inst/include/euler.h |only pomp-0.19-1/pomp/inst/include/lookup_table.h |only pomp-0.19-1/pomp/src/euler.h |only pomp-0.19-1/pomp/src/lookup_table.h |only pomp-0.20-2/pomp/DESCRIPTION | 6 pomp-0.20-2/pomp/NAMESPACE | 20 - pomp-0.20-2/pomp/R/aaa.R | 100 +++++ pomp-0.20-2/pomp/R/compare.mif.R |only pomp-0.20-2/pomp/R/dmeasure-pomp.R | 12 pomp-0.20-2/pomp/R/euler.R | 60 ++- pomp-0.20-2/pomp/R/init.state-pomp.R | 1 pomp-0.20-2/pomp/R/mif-methods.R | 26 + pomp-0.20-2/pomp/R/mif.R | 25 + pomp-0.20-2/pomp/R/plot-pomp.R | 12 pomp-0.20-2/pomp/R/pomp-methods.R | 49 ++ pomp-0.20-2/pomp/R/pomp.R | 288 +++++++++++++++-- pomp-0.20-2/pomp/R/rmeasure-pomp.R | 12 pomp-0.20-2/pomp/R/simulate-pomp.R | 5 pomp-0.20-2/pomp/R/skeleton-pomp.R |only pomp-0.20-2/pomp/data/ou2.rda |binary pomp-0.20-2/pomp/inst/ChangeLog |only pomp-0.20-2/pomp/inst/NEWS |only pomp-0.20-2/pomp/inst/doc/compiled_code_in_pomp.Rnw | 123 ------- pomp-0.20-2/pomp/inst/doc/compiled_code_in_pomp.pdf |binary pomp-0.20-2/pomp/inst/doc/intro_to_pomp.Rnw | 87 ++--- pomp-0.20-2/pomp/inst/doc/intro_to_pomp.pdf |binary pomp-0.20-2/pomp/inst/examples/sir.R | 251 ++++++++------ pomp-0.20-2/pomp/inst/examples/sir.c | 104 ++++-- pomp-0.20-2/pomp/inst/include/pomp.h |only pomp-0.20-2/pomp/man/dmeasure-pomp.Rd | 5 pomp-0.20-2/pomp/man/dprocess-pomp.Rd | 88 ++--- pomp-0.20-2/pomp/man/euler.Rd | 154 +++------ pomp-0.20-2/pomp/man/eulermultinom.Rd | 2 pomp-0.20-2/pomp/man/mif-class.Rd | 15 pomp-0.20-2/pomp/man/mif-methods.Rd | 25 + pomp-0.20-2/pomp/man/mif.Rd | 5 pomp-0.20-2/pomp/man/pomp-class.Rd | 109 +----- pomp-0.20-2/pomp/man/pomp-methods.Rd |only pomp-0.20-2/pomp/man/pomp.Rd | 142 +++++--- pomp-0.20-2/pomp/man/rmeasure-pomp.Rd | 38 +- pomp-0.20-2/pomp/man/skeleton-pomp.Rd |only pomp-0.20-2/pomp/src/bspline.c | 2 pomp-0.20-2/pomp/src/dmeasure.c | 259 +++++++++++++-- pomp-0.20-2/pomp/src/dprocess.c | 32 + pomp-0.20-2/pomp/src/dsobol.c | 2 pomp-0.20-2/pomp/src/euler.c | 336 ++++++++++++++++---- pomp-0.20-2/pomp/src/eulermultinom.c | 2 pomp-0.20-2/pomp/src/initstate.c | 47 ++ pomp-0.20-2/pomp/src/lookup_table.c | 49 ++ pomp-0.20-2/pomp/src/ou2.c | 200 ++--------- pomp-0.20-2/pomp/src/pomp.h | 228 ++++++++----- pomp-0.20-2/pomp/src/pomp_fun.c |only pomp-0.20-2/pomp/src/pomp_internal.h |only pomp-0.20-2/pomp/src/resample.c | 2 pomp-0.20-2/pomp/src/rmeasure.c | 249 ++++++++++++-- pomp-0.20-2/pomp/src/rprocess.c | 30 + pomp-0.20-2/pomp/src/sir.c | 104 ++++-- pomp-0.20-2/pomp/src/skeleton.c |only pomp-0.20-2/pomp/tests/ou2-kalman.R | 18 - pomp-0.20-2/pomp/tests/ou2-kalman.Rout.save |only pomp-0.20-2/pomp/tests/ou2-mif.R | 22 - pomp-0.20-2/pomp/tests/ou2-mif.Rout.save |only pomp-0.20-2/pomp/tests/ou2-simulate.Rout.save |only pomp-0.20-2/pomp/tests/rw2.R | 137 +++++--- pomp-0.20-2/pomp/tests/rw2.Rout.save |only pomp-0.20-2/pomp/tests/sir.R |only pomp-0.20-2/pomp/tests/sir.Rout.save |only 68 files changed, 2287 insertions(+), 1196 deletions(-)
More information about pomp at CRAN
posted at: 17:16 | path: /cran/updated | permanent link to this entry
New package bark with initial version 0.1-0
More information about bark at CRAN
Package pscl updated to version 0.97 with previous version 0.96 dated 2008-06-26 Author: Simon Jackman, with contributions from
Alex Tahk, Achim Zeileis, Christina Maimone and Jim Fearon
Diff between pscl versions 0.96 dated 2008-06-26 and 0.97 dated 2008-07-16
More information about pscl at CRAN
Package logcondens updated to version 1.3.2 with previous version 1.3.1 dated 2007-10-04 Author: Kaspar Rufibach
Diff between logcondens versions 1.3.1 dated 2007-10-04 and 1.3.2 dated 2008-07-16
More information about logcondens at CRAN
Package kappalab updated to version 0.4-3 with previous version 0.4-1 dated 2007-12-07 Author: Michel Grabisch, Ivan Kojadinovic, Patrick Meyer.
Diff between kappalab versions 0.4-1 dated 2007-12-07 and 0.4-3 dated 2008-07-16
More information about kappalab at CRAN
New package fts with initial version 0.7.5
More information about fts at CRAN
Package foreign updated to version 0.8-27 with previous version 0.8-26 dated 2008-05-29 Author: R-core members, Saikat DebRoy
Diff between foreign versions 0.8-26 dated 2008-05-29 and 0.8-27 dated 2008-07-16
More information about foreign at CRAN
Package bcp updated to version 2.1 with previous version 2.0 dated 2008-06-01 Author: Chandra Erdman and John W. Emerson
Diff between bcp versions 2.0 dated 2008-06-01 and 2.1 dated 2008-07-16
More information about bcp at CRAN
Package FitAR updated to version 1.71 with previous version 1.7 dated 2008-06-25 Author: A.I. McLeod and Ying Zhang
Diff between FitAR versions 1.7 dated 2008-06-25 and 1.71 dated 2008-07-16
More information about FitAR at CRAN
Package AcceptanceSampling updated to version 1.0-0 with previous version 0.1-4 dated 2008-05-16 Author: Andreas Kiermeier
Diff between AcceptanceSampling versions 0.1-4 dated 2008-05-16 and 1.0-0 dated 2008-07-16
More information about AcceptanceSampling at CRAN
Package: bark
Type: Package
Title: Bayesian Additive Regresssion Kernels
Version: 0.1-0
Date: 2008-07-16
Author: Zhi Ouyang
Maintainer: Zhi Ouyang
Description: Impelementation of BARK: Bayesian Additive Regression Kernels with Feature Selection, Zhi Ouyang (2008), Ph.D. thesis, chapter 3.
License: GPL version 2 or newer
URL: http://www.r-project.org, http://www.stat.duke.edu/~zo2/research.html
LazyLoad: yes
Packaged: Wed Jul 16 11:46:34 2008; zo2
posted at: 17:16 | path: /cran/new | permanent link to this entry
Title: Political Science Computational Laboratory, Stanford University
Description: Bayesian analysis of item-response theory (IRT) models, roll call analysis;
computing highest density regions; maximum likelihood estimation of
zero-inflated and hurdle models for count data; goodness-of-fit measures for
GLMs; data sets used in writing and teaching at the Political Science
Computational Laboratory; seats-votes curves.
DESCRIPTION | 6 -
HISTORY | 9 ++
R/dropRollCall.r | 157 ++++++++++++++++++++++++++++++++---------
R/ideal.r | 10 ++
R/igamma.r | 20 +++--
R/margins.rollcall.r | 3
R/plot.ideal.r | 8 +-
R/postProcess.r | 33 ++++----
R/rollcall.r | 114 +++++++++++++++++++++--------
R/summary.ideal.r | 34 ++++++--
data/presidentialElections.rda |only
data/s109.rda |binary
inst/doc/.build.timestamp |only
inst/doc/auto/countreg.el | 17 +---
inst/doc/countreg.pdf |binary
man/dropRollCall.Rd | 66 +++++++++++++----
man/dropUnanimous.Rd | 2
man/hitmiss.Rd | 3
man/idealToMCMC.Rd | 5 -
man/plot.ideal.Rd | 7 +
man/presidentialElections.Rd |only
man/readKH.Rd | 5 -
man/s109.Rd | 38 +++++----
man/simpi.Rd | 4 -
man/summary.rollcall.Rd | 6 +
25 files changed, 388 insertions(+), 159 deletions(-)
posted at: 13:16 | path: /cran/updated | permanent link to this entry
Title: Estimate a Log-Concave Probability Density from iid Observations
Description: Given independent and identically distributed observations X(1), ..., X(n), this package allows to
compute a concave, piecewise linear function phi on [X(1), X(n)] with knots only in {X(1), X(2), ..., X(n)}
such that L(phi) = sum_{i=1}^n W(i)*phi(X(i)) - int_{X(1)}^{X(n)} exp(phi(x)) dx is maximal, for some
weights W(1), ..., W(n) s.t. sum_{i=1}^n W(i) = 1. According to the results in Duembgen and Rufibach (2008),
this function phi maximizes the ordinary log-likelihood sum_{i=1}^n W(i)*phi(X(i))
under the constraint that phi is concave. The corresponding function exp(phi) is a log-concave probability density.
Two algorithms are offered: An active set algorithm and one based on the pool-adjacent-violaters algorithm.
DESCRIPTION | 14
R/intF.r | 4
inst/doc/logcondens_vignette.pdf | 751 +++++++++++++++++++--------------------
man/Jfunctions.Rd | 4
man/Lhat_eta.Rd | 4
man/Local_LL.Rd | 4
man/Local_LL_all.Rd | 4
man/MLE.Rd | 4
man/activeSetLogCon.Rd | 12
man/activeSetRoutines.Rd | 4
man/evaluateLogConDens.Rd | 4
man/icmaLogCon.Rd | 4
man/intECDF.Rd | 10
man/intF.Rd | 16
man/isoMean.Rd | 4
man/logcondens-package.Rd | 22 -
man/qloglin.Rd | 4
man/quadDeriv.Rd | 4
man/quantilesLogConDens.Rd | 4
man/reparametrizations.Rd | 4
man/robust.Rd | 4
21 files changed, 447 insertions(+), 438 deletions(-)
posted at: 13:16 | path: /cran/updated | permanent link to this entry
Title: Non-additive measure and integral manipulation functions
Description: Kappalab, which stands for "laboratory for capacities", is an S4 tool box for capacity (or non-additive measure, fuzzy measure) and integral manipulation on a finite setting. It contains routines for handling various types of set functions such as games or capacities. It can be used to compute several non-additive integrals: the Choquet integral, the Sugeno integral, and the symmetric and asymmetric Choquet integrals. An analysis of capacities in terms of decision behavior can be performed through the computation of various indices such as the Shapley value, the interaction index, the orness degree, etc. The well-known Möbius transform, as well as other equivalent representations of set functions can also be computed. Kappalab further contains seven capacity identification routines: three least squares based approaches, a method based on linear programming, a maximum entropy like method based on variance minimization, a minimum distance approach and an unsupervised approach grounded on parametric entropies. The functions contained in Kappalab can for instance be used in the framework of multicriteria decision making or cooperative game theory.
kappalab-0.4-1/kappalab/man/round-methods.Rd |only
kappalab-0.4-3/kappalab/DESCRIPTION | 6 +++---
kappalab-0.4-3/kappalab/NAMESPACE | 2 +-
kappalab-0.4-3/kappalab/R/AllGeneric.R | 6 +++---
kappalab-0.4-3/kappalab/R/ls.ranking.capa.ident.R | 12 +++++++++---
kappalab-0.4-3/kappalab/R/superclass.set.func.R | 2 +-
kappalab-0.4-3/kappalab/man/Choquet.integral-methods.Rd | 2 +-
kappalab-0.4-3/kappalab/man/Mobius-methods.Rd | 2 +-
kappalab-0.4-3/kappalab/man/Mobius.capacity-class.Rd | 2 +-
kappalab-0.4-3/kappalab/man/Mobius.card.set.func-class.Rd | 2 +-
kappalab-0.4-3/kappalab/man/Mobius.game-class.Rd | 2 +-
kappalab-0.4-3/kappalab/man/Mobius.set.func-class.Rd | 6 +++---
kappalab-0.4-3/kappalab/man/Sipos.integral-methods.Rd | 2 +-
kappalab-0.4-3/kappalab/man/Sugeno.integral-methods.Rd | 2 +-
kappalab-0.4-3/kappalab/man/entropy-methods.Rd | 2 +-
kappalab-0.4-3/kappalab/man/favor-methods.Rd | 2 +-
kappalab-0.4-3/kappalab/man/is.kadditive-methods.Rd | 2 +-
kappalab-0.4-3/kappalab/man/is.monotone-methods.Rd | 2 +-
kappalab-0.4-3/kappalab/man/is.normalized-methods.Rd | 2 +-
kappalab-0.4-3/kappalab/man/ls.ranking.capa.ident.Rd | 2 +-
kappalab-0.4-3/kappalab/man/rnd-methods.Rd |only
kappalab-0.4-3/kappalab/man/show-methods.Rd | 2 +-
kappalab-0.4-3/kappalab/man/superclass.set.func-class.Rd | 6 +++---
kappalab-0.4-3/kappalab/man/to.data.frame-methods.Rd | 2 +-
kappalab-0.4-3/kappalab/man/variance-methods.Rd | 2 +-
kappalab-0.4-3/kappalab/man/veto-methods.Rd | 2 +-
kappalab-0.4-3/kappalab/man/zeta-methods.Rd | 2 +-
kappalab-0.4-3/kappalab/src/core.c | 4 ++++
28 files changed, 45 insertions(+), 35 deletions(-)
posted at: 13:16 | path: /cran/updated | permanent link to this entry
Package: fts
Title: R interface to tslib (a time series library in c++)
Version: 0.7.5
Maintainer: Whit Armstrong
Author: Whit Armstrong
Depends: utils, stats
Description: fast operations for time series objects
License: GPL Version 3
Packaged: Wed Jul 16 08:23:34 2008; whit
posted at: 13:16 | path: /cran/new | permanent link to this entry
Title: Read Data Stored by Minitab, S, SAS, SPSS, Stata, Systat, dBase, ...
Description: Functions for reading and writing data stored by statistical
packages such as Minitab, S, SAS, SPSS, Stata, Systat, ...,
and for reading and writing .dbf (dBase) files.
ChangeLog | 43 ++++--
DESCRIPTION | 6
K_Van_Dijck_patch |only
K_Van_Dijck_patch-2 |only
src/SASxport.c | 7 -
src/minitab.c | 5
src/sfm-read.c | 72 ++++++++++-
src/sfm-read.c.orig |only
src/sfm-read.c.rej |only
src/spss.c | 5
src/stataread.c | 7 -
src/var.h.in | 12 +
src/var.h.in.orig |only
src/var.h.in.rej |only
tests/sas.R | 1
tests/spss.R | 70 +++++++---
tests/spss.Rout.save | 326 ++++++++-------------------------------------------
tests/spss_long.sav |only
18 files changed, 230 insertions(+), 324 deletions(-)
posted at: 13:16 | path: /cran/updated | permanent link to this entry
Title: A Package for Performing a Bayesian Analysis of Change Point Problems
Description: An implementation of the Barry and Hartigan (1993) product partition model for the standard change point problem using Markov Chain Monte Carlo.
DESCRIPTION | 23 +++---
NAMESPACE | 2
R/bcp.R | 88 ++++++++++++++++++++++++-
R/output.R | 5 +
man/RealInt.Rd | 39 ++++++-----
man/bcp.Rd | 142 +++++++++++++++++++++++++----------------
man/coriell.Rd | 107 ++++++++++++++++---------------
man/fitted.bcp.Rd | 150 +++++++++++--------------------------------
man/interval.prob.Rd |only
man/plot.bcp.Rd | 154 ++++++++++++---------------------------------
man/print.bcp.Rd | 170 +++++++++++++++----------------------------------
man/residuals.bcp.Rd | 149 +++++++++++--------------------------------
man/summary.bcp.Rd | 174 ++++++++++++++++-----------------------------------
13 files changed, 496 insertions(+), 707 deletions(-)
posted at: 13:16 | path: /cran/updated | permanent link to this entry
Title: Subset AR Model Fitting
Description: Complete functions are given for model identification, estimation and diagnostic checking for AR and subset AR models. Two types of subset AR models are supported. One family of subset AR models, denoted by ARp, is formed by taking subet of the original AR coefficients and in the other, denoted by ARz, subsets of the partial autocorrelations are used. The main advantage of the ARz model is its applicability to very large order models.
DESCRIPTION | 6 +++---
R/cts.R | 6 +++++-
man/FitAR-package.Rd | 4 ++--
man/cts.Rd | 36 +++++++++++++++++++++++++++++++++---
4 files changed, 43 insertions(+), 9 deletions(-)
posted at: 13:16 | path: /cran/updated | permanent link to this entry
Title: Creation and evaluation of Acceptance Sampling Plans
Description: This package provides functionality for creating and
evaluating acceptance sampling plans. Plans can be single,
double or multiple sampling plans
DESCRIPTION | 4 ++--
inst |only
2 files changed, 2 insertions(+), 2 deletions(-)
posted at: 13:16 | path: /cran/updated | permanent link to this entry