Author: Roger Koenker
Diff between quantreg versions 4.23 dated 2008-10-12 and 4.24 dated 2008-11-13
Title: Quantile Regression
Description: Quantile regression and related methods.
DESCRIPTION | 6 +++---
R/nlrq.R | 35 +++++++++++++----------------------
R/quantreg.R | 13 ++++++++-----
inst/ChangeLog | 14 ++++++++++++++
inst/doc/Rplots.pdf | 4 ++--
inst/doc/rq.pdf |binary
man/crq.Rd | 5 +++--
man/nlrq.control.Rd | 6 +++++-
man/rq.fit.br.Rd | 2 +-
9 files changed, 49 insertions(+), 36 deletions(-)
Author: Robert B. Gramacy
Diff between monomvn versions 1.4-1 dated 2008-09-22 and 1.5 dated 2008-11-13
Title: Estimation for multivariate normal data with monotone missingness
Description: Estimation of multivariate normal data of arbitrary dimension
where the pattern of missing data is monotone. Through the use of
parsimonious/shrinkage regressions (plsr, pcr, lasso, ridge,
etc.), where standard regressions fail, the package can handle an
(almost) arbitrary amount of missing data. The current version
supports maximum likelihood inference and implementation
of a Bayesian version employing a Bayesian lasso. A fully
functional standalone interface to the Bayesian lasso
(from Park & Casella) and ridge regression with model selection
via Reversible Jump is also provided
ChangeLog | 28 ++
DESCRIPTION | 16 -
INDEX | 22 +-
R/blasso.R | 22 +-
R/blasso.s3.R | 17 +
R/bmonomvn.R | 113 +++++++++-
R/default.QP.R |only
R/monomvn.s3.R | 113 ++++++++++
man/blasso.Rd | 79 ++++---
man/blasso.s3.Rd | 12 -
man/bmonomvn.Rd | 156 ++++++++++----
man/cement.Rd | 6
man/default.QP.Rd |only
man/metrics.Rd | 4
man/monomvn-internal.Rd | 3
man/monomvn-package.Rd | 6
man/monomvn.Rd | 19 -
man/monomvn.s3.Rd | 25 +-
man/plot.monomvn.Rd |only
man/posdef.approx.Rd | 10
man/randmvn.Rd | 30 +-
man/regress.Rd | 13 -
man/rmono.Rd | 5
man/rwish.Rd | 6
src/blasso.cc | 226 ++++++++++++---------
src/blasso.h | 53 ++---
src/bmonomvn.cc | 508 +++++++++++++++++++++++++++++++++++++++++-------
src/bmonomvn.h | 98 +++++++--
src/linalg.c | 4
src/matrix.c | 16 +
src/matrix.h | 1
src/solve.QP.f |only
src/util.f |only
33 files changed, 1217 insertions(+), 394 deletions(-)
Author: Roger Bivand
Title: Interface between GRASS 6 geographical information system and R
Description: Interpreted interface between GRASS 6 geographical
information system and R, based on starting R from within the GRASS
environment.
Diff between spgrass6 versions 0.5-15 dated 2008-10-17 and 0.5-16 dated 2008-11-13
ChangeLog | 18 ++++++++++++++++++ DESCRIPTION | 8 ++++---- R/spgrass6.R | 1 + R/zzz.R | 28 ++++++++++++++++++++++------ inst/CITATION |only inst/ChangeLog | 18 ++++++++++++++++++ man/readRAST6.Rd | 20 ++++++++++---------- man/readVECT6.Rd | 4 ++-- 8 files changed, 75 insertions(+), 22 deletions(-)
Author: Tuomas Rajala
Title: Graphs for spatial point patterns
Description: Graphs, graph visualization and graph component calculations, ment to be used as a tool in
spatial point pattern analysis. See package 'spatstat' for more info about spatial point patterns.
Diff between spatgraphs versions 2.01 dated 2008-08-01 and 2.1 dated 2008-11-13
DESCRIPTION | 6 ++-- R/First.R | 2 - R/adjacency.R | 4 +- R/class.R | 28 +++++++++++++++--- R/clustering.R | 2 + R/mstoperations.R | 9 +++--- R/others.R | 4 +- R/plot.R | 31 ++++++++++---------- R/shortestPath.R |only R/spatgraph.R | 6 ++-- ToAdd.TXT0 | 31 ++++++++++++-------- change.log |only man/spatgraphs-package.Rd | 9 +++--- man/spatgraphs-sg.Rd | 1 man/spatgraphs-shortestPath.Rd |only man/spatgraphs-spatgraph.Rd | 10 ++++++ src/Graph.cpp | 61 ++++++++++++++++++++++++++++++++++------- src/Graph.h | 3 ++ src/Pp.cpp | 4 +- src/Rextras.cpp | 2 - src/clustering.cpp | 8 ++--- 21 files changed, 152 insertions(+), 69 deletions(-)
Author: Kaspar Rufibach
Title: Generate LaTeX tables of descriptive statistics
Description: The functions in this package are especially helpful when writing reports of data analysis using Sweave.
Diff between reporttools versions 1.0 dated 2008-11-04 and 1.0.1 dated 2008-11-13
reporttools-1.0.1/reporttools/CHANGES | 8 ++++++++ reporttools-1.0.1/reporttools/DESCRIPTION | 8 ++++---- reporttools-1.0.1/reporttools/R/NAtoCategory.R | 4 ++-- reporttools-1.0.1/reporttools/R/checkDateSuccession.R | 2 +- reporttools-1.0.1/reporttools/R/displayCI.R |only reporttools-1.0.1/reporttools/R/displayKbyC.R |only reporttools-1.0.1/reporttools/R/tableContinuous.R | 13 ++++++++++--- reporttools-1.0.1/reporttools/R/tableNominal.R | 15 +++++++++++---- reporttools-1.0.1/reporttools/man/checkDateSuccession.Rd | 2 +- reporttools-1.0.1/reporttools/man/displayCI.Rd |only reporttools-1.0.1/reporttools/man/displayKbyC.Rd |only reporttools-1.0.1/reporttools/man/eliminateNA.Rd | 2 +- reporttools-1.0.1/reporttools/man/reporttools-package.Rd | 6 +++--- reporttools-1.0.1/reporttools/man/tableContinuous.Rd | 14 ++++++++------ reporttools-1.0.1/reporttools/man/tableDate.Rd | 2 +- reporttools-1.0.1/reporttools/man/tableNominal.Rd | 9 +++++---- reporttools-1.0/reporttools/R/display2by2.R |only reporttools-1.0/reporttools/man/display2by2.Rd |only 18 files changed, 55 insertions(+), 30 deletions(-)
Author: Maja Pohar Perme
Title: Relative survival regression
Description: Various functions for
regression in relative survival.
Diff between relsurv versions 1.4 dated 2007-10-11 and 1.5 dated 2008-11-13
DESCRIPTION | 6 +++--- R/Rcode.r | 36 ++++++++++++++++++++++++++++++++---- R/rssurvrsadd.r | 2 -- R/survfitrsadd.r | 2 -- man/invtime.Rd | 9 +++++++++ man/joinrate.Rd | 10 ++++++++++ man/plotrszph.Rd | 13 +++++++++++++ man/resid.Rd | 12 ++++++++++++ man/rsadd.Rd | 50 +++++++++++++++++++++++++++++++++++++++----------- man/rsbr.Rd | 10 ++++++++-- man/rsmul.Rd | 34 ++++++++++++++++++++++++++++++---- man/rssurv.Rd | 25 +++++++++++++++++++++++-- man/rstrans.Rd | 33 ++++++++++++++++++++++++++++----- man/rszph.Rd | 10 +++++++--- man/survfitrsadd.rd | 10 ++++++++++ man/transrate.Rd | 6 +++++- man/transratehld.Rd | 7 ++++++- man/transratehmd.Rd | 10 ++++++++++ 18 files changed, 245 insertions(+), 40 deletions(-)
Author: Robin K. S. Hankin
Title: Additive partitions of integers
Description: Additive partitions of integers. Enumerates the
partitions, unequal partitions, and restricted partitions of an
integer; the three corresponding partition functions are also
given. Set partitions are now included.
Diff between partitions versions 1.7-5 dated 2008-08-22 and 1.8-2 dated 2008-11-13
DESCRIPTION | 6 +++--- inst/doc |only 2 files changed, 3 insertions(+), 3 deletions(-)
Author: Torsten Hothorn, Peter Buhlmann, Thomas Kneib, Matthias Schmid and
Benjamin Hofner
Title: Model-Based Boosting
Description: Functional gradient descent algorithms
(boosting) for optimizing general loss functions utilizing
componentwise least squares, either of parametric linear form or
smoothing splines, or regression trees as base learners for fitting
generalized linear, additive and interaction models to potentially
high-dimensional data.
Diff between mboost versions 1.0-3 dated 2008-11-07 and 1.0-4 dated 2008-11-13
mboost-1.0-3/mboost/tests/setup.Rout.save |only mboost-1.0-4/mboost/DESCRIPTION | 5 +-- mboost-1.0-4/mboost/R/family.R | 2 - mboost-1.0-4/mboost/inst/CHANGES | 6 +++ mboost-1.0-4/mboost/inst/doc/SurvivalEnsembles.pdf |binary mboost-1.0-4/mboost/inst/doc/mboost_illustrations.pdf |binary mboost-1.0-4/mboost/tests/bugfixes.R | 26 +++++++++++++++ mboost-1.0-4/mboost/tests/bugfixes.Rout.save | 30 ++++++++++++++++++ 8 files changed, 66 insertions(+), 3 deletions(-)
Author: Nicholas J. Lewin-Koh and Roger Bivand, contributions by Edzer J. Pebesma, Eric Archer, Adrian Baddeley, Stéphane Dray, David Forrest, Patrick Giraudoux, Duncan Golicher, Virgilio Gómez Rubio, Patrick Hausmann, Thomas Jagger, Sebastian P. Luque, Don MacQueen, Andrew Niccolai and Tom Short
Title: Tools for reading and handling spatial objects
Description: Set of tools for manipulating and reading geographic data, in particular ESRI shapefiles; C code used from shapelib. It includes binary access to GSHHS shoreline files. The package also provides interface wrappers for exchanging spatial objects with packages such as PBSmapping, spatstat, maps, RArcInfo, Stata tmap, WinBUGS, Mondrian, and others.
Diff between maptools versions 0.7-15 dated 2008-08-14 and 0.7-16 dated 2008-11-13
ChangeLog | 9 +++++++ DESCRIPTION | 8 +++--- NAMESPACE | 4 ++- R/SP2owin.R | 3 +- R/sp_spat1.R | 3 ++ R/spatstat1.R | 67 +++++++++++++++++++++++++++++++++++++++++++++++++++++++++ inst/ChangeLog | 9 +++++++ man/as.ppp.Rd | 38 ++++++++++++++++++++++++++------ man/ppp.Rd | 1 9 files changed, 129 insertions(+), 13 deletions(-)
Author: Edzer J. Pebesma
Diff between gstat versions 0.9-53 dated 2008-10-30 and 0.9-55 dated 2008-11-13
Title: geostatistical modelling, prediction and simulation
Description: variogram modelling; simple, ordinary and universal point
or block (co)kriging, sequential Gaussian or indicator (co)simulation;
variogram and variogram map plotting utility functions.
DESCRIPTION | 6
R/fit.variogram.R | 4
R/load.variogram.model.R | 6
R/variogram.default.R | 4
inst/ChangeLog | 89
inst/doc/gstat.pdf |29417 +++++++++++++++++++++++------------------------
man/sic97.Rd | 3
man/tull.Rd | 2
man/vgm.panel.Rd | 3
src/s.c | 6
src/vario.c | 5
src/vario.h | 1
src/vario_fn.c | 31
src/vario_fn.h | 1
tests/covtable.Rout.save | 7
tests/fit.Rout.save | 8
tests/merge.Rout.save | 14
tests/sim.Rout.save | 28
18 files changed, 14636 insertions(+), 14999 deletions(-)
Author: Christian Ritz
Diff between drc versions 1.5-1 dated 2008-11-10 and 1.5-2 dated 2008-11-13
Title: Analysis of dose-response curves
Description: Analysis of one or multiple curves with focus on concentration-response, dose-response and time-response curves used, for example in biology, environmental sciences, medicine, pharmacology, toxicology.
DESCRIPTION | 6 +--
R/plot.drc.R | 8 ++--
R/simFct.R | 108 ++++++++++++++++++++++++++++++++++++++---------------------
3 files changed, 77 insertions(+), 45 deletions(-)
Author: Vinzenz Erhardt
Title: Generate correlated count random variables
Description: Generate high-dimensional correlated count random variables with a prespecified Pearson correlation.
Diff between corcounts versions 1.0 dated 2008-11-09 and 1.1 dated 2008-11-13
DESCRIPTION | 6 +++--- R/rcounts.R | 35 ++++++++++++++++++++++++++++++++--- man/corcounts-package.Rd | 4 ++-- man/rcounts.Rd | 20 +++++++++++++++++--- man/unstructured.Rd | 15 +++++++++++++-- 5 files changed, 67 insertions(+), 13 deletions(-)
Author: S original by David James
Diff between chron versions 2.3-24 dated 2008-07-18 and 2.3-25 dated 2008-11-13
Title: Chronological objects which can handle dates and times
Description: Chronological objects which can handle dates and times
ChangeLog | 7 +++++++
DESCRIPTION | 6 +++---
R/dates.R | 7 +++++--
R/utils.R | 18 ++++++++++++++++++
4 files changed, 33 insertions(+), 5 deletions(-)
Author: P. Filzmoser and K. Varmuza
Title: Multivariate Statistical Analysis in Chemometrics
Description: This package is the R companion to the book "Introduction to Multivariate Statistical Analysis in Chemometrics" written by K. Varmuza and P. Filzmoser, CRC Press
Diff between chemometrics versions 0.2 dated 2008-04-24 and 0.4 dated 2008-11-13
DESCRIPTION | 6 - R/mvr_dcv.R | 227 +++++++++++++++++++++++++------------------------------- data/Phenyl.rda |only data/cereal.rda |binary man/Phenyl.Rd |only man/cereal.Rd | 2 man/mvr_dcv.Rd | 5 - 7 files changed, 113 insertions(+), 127 deletions(-)
Author: Marcello D'Orazio
Title: Statistical Matching
Description: This package provides some functions to perform statistical matching between two data sources and to impute missing values in data sets through hot deck methods.
Diff between StatMatch versions 0.4 dated 2008-10-10 and 0.5 dated 2008-11-13
DESCRIPTION | 8 +++--- R/NND.hotdeck.R | 67 +++++++++++++++++++++++++++++---------------------- R/RANDwNND.hotdeck.R | 26 ++++++++++++------- R/gower.dist.R | 43 ++++++++++++-------------------- man/gower.dist.Rd | 2 - 5 files changed, 77 insertions(+), 69 deletions(-)