Author: Sanjay Chaudhuri
Diff between glmc versions 0.2-1 dated 2006-12-06 and 0.2-2 dated 2008-11-26
Title: Fitting Generalized Linear Models Subject to Constraints
Description: Fits generalized linear models where the parameters are subject to linear constraints. The model is specified by giving a symbolic description of the linear predictor, a description of the error distribution, and a matrix of constraints on the parameters.
DESCRIPTION | 4 ++--
R/glmc.r | 2 +-
2 files changed, 3 insertions(+), 3 deletions(-)
Author: Holger Froehlich
Diff between gene2pathway versions 1.0.3 dated 2008-11-12 and 1.0.5 dated 2008-11-26
Title: Prediction of KEGG pathway membership for individual genes based on InterPro domain signatures
Description: The package takes a list of genes and predicts to which KEGG pathway each gene maps to. This is done by looking at the InterPro domains of each gene. Each prediction is assigned a confidence score. The package also allows to predict connected component membership of genes within signaling pathways. Separate models for each organism supported by KEGG can be trained.
CITATION |only
DESCRIPTION | 6 +--
NAMESPACE | 5 ++-
R/buildTrainingSet.R | 2 -
R/gene2pathway.R | 45 ++++++++++++++++++----------
R/gene2pathway.signaltrans.R | 22 ++++++++-----
R/test.overrepresentation.R | 11 ++++--
data/classificationModelSignalTrans_hsa.rda |binary
inst/doc/gene2pathway.Rnw | 6 +--
inst/doc/gene2pathway.pdf |binary
man/ORF2Entrez.Rd | 1
man/getComponents.Rd | 2 +
man/internal.Rd | 2 -
man/retrain.Rd | 5 +++
man/retrain.signaltrans.Rd | 5 +++
man/test.overrepresentation.Rd | 5 ++-
16 files changed, 78 insertions(+), 39 deletions(-)
Author: Jose L. Izquierdo
Diff between Metabonomic versions 2.1 dated 2008-11-24 and 2.2 dated 2008-11-26
Title: GUI for Metabonomic Analysis
Description: Graphical User Interface for the Metabonomic Analysis (Baseline, Normalization, Peak Detection,
PCA, PLS, Nearest Neigbourgt, Neural Network) developed to make easy this data analysis.
DESCRIPTION | 6 +++---
R/Baseline.Correction.R | 18 +++++++++---------
R/Met.delete.R | 10 +++++-----
R/Met.spectrum.2.R | 10 +++++-----
R/Met.spectrum.R | 10 +++++-----
R/Metabonomic-internal.R | 2 +-
inst |only
7 files changed, 28 insertions(+), 28 deletions(-)
Author: Arnost Komarek
Diff between bayesSurv versions 0.5-10 dated 2008-06-26 and 0.6 dated 2008-11-26
Title: Bayesian Survival Regression with Flexible Error and Random Effects Distributions
Description: Later
CHANGES | 5 +++++
DESCRIPTION | 6 +++---
R/bayesBisurvreg.writeHeaders.R | 10 ++++++----
R/bayessurvreg.design.R | 8 ++++----
R/bayessurvreg1.writeHeaders.R | 20 +++++++++++---------
R/bayessurvreg2.R | 2 +-
R/bayessurvreg2.priorBeta.R | 29 +++++++++++++++++++++--------
R/bayessurvreg2.writeHeaders.R | 14 ++++++++------
R/bayessurvreg3.writeHeaders.R | 12 +++++++-----
R/files.Gspline.R | 28 ++++++++++++++++------------
src/bayessurvreg2.cpp | 16 +++++++++++-----
src/classBetaGamma.cpp | 3 +--
src/classRandomEff.cpp | 7 ++++---
src/classRandomEff.h | 2 +-
14 files changed, 99 insertions(+), 63 deletions(-)
Author: Brian J. Smith
Diff between ramps versions 0.6-6 dated 2008-07-28 and 0.6-7 dated 2008-11-26
Title: Bayesian Geostatistical Modeling with RAMPS
Description: Bayesian geostatistical modeling of Gaussian processes using a reparameterized and marginalized posterior sampling (RAMPS) algorithm designed to lower autocorrelation in MCMC samples. Package performance is tuned for large spatial datasets.
DESCRIPTION | 6 +++---
R/graphics.R | 6 +++---
2 files changed, 6 insertions(+), 6 deletions(-)
Author: Ioannis Kosmidis
Diff between profileModel versions 0.5-5 dated 2008-11-21 and 0.5-6 dated 2008-11-26
Title: Tools for profiling inference functions for various model classes
Description: profileModel provides tools that can be used to calculate, evaluate, plot and use for inference the profiles of *arbitrary* inference functions for *arbitrary* 'glm'-like fitted models with linear predictors.
DESCRIPTION | 6 +++---
NAMESPACE | 2 +-
R/plot.profileModel.R | 7 ++++---
R/print.profileModel.R | 24 +++++++++++++++++++++---
R/profileModel.R | 2 +-
inst/CHANGES | 6 ++++++
inst/CITATION | 2 +-
man/confintModel.Rd | 9 ++-------
man/profileModel.Rd | 3 +--
9 files changed, 40 insertions(+), 21 deletions(-)
Author: Edzer J. Pebesma
Diff between gstat versions 0.9-55 dated 2008-11-13 and 0.9-56 dated 2008-11-26
Title: geostatistical modelling, prediction and simulation
Description: variogram modelling; simple, ordinary and universal point
or block (co)kriging, sequential Gaussian or indicator (co)simulation;
variogram and variogram map plotting utility functions.
DESCRIPTION | 6 +++---
man/show.vgms.Rd | 3 +++
src/mapio.c | 3 +++
src/s.c | 18 +++++++++++-------
src/vario.c | 7 +++++++
src/vario_fn.c | 35 +++++++++++++++++++++++++----------
6 files changed, 52 insertions(+), 20 deletions(-)
Author: Ioannis Kosmidis
Diff between brglm versions 0.5-3 dated 2008-04-10 and 0.5-4 dated 2008-11-26
Title: Bias reduction in binomial-response GLMs.
Description: Fit binomial-response GLMs using either a modified-score approach to bias reduction or maximum penalized likelihood where penalization is by Jeffreys invariant prior. Fitting takes place by iteratively fitting a local GLM on a pseudo-data representation. The interface is essentially the same as 'glm'. More flexibility is provided by the fact that custom pseudo-data representations can be specified and used for model fitting. Functions are provided for the construction of confidence intervals for the bias-reduced estimates.
DESCRIPTION | 10 +++++-----
R/brglm.R | 40 +++++++++++++++++++++++++++++-----------
R/confint.brglm.R | 4 ++--
R/plot.profile.brglm.R | 4 ++--
R/profile.brglm.R | 16 ++++++++--------
R/separation.detection.R | 6 ++++--
inst/CHANGES | 14 ++++++++++++--
inst/CITATION |only
man/brglm.Rd | 44 +++++++++++++++-----------------------------
man/lizards.Rd | 5 +----
10 files changed, 78 insertions(+), 65 deletions(-)
Author: Andrew Gelman
Diff between arm versions 1.1-16 dated 2008-10-01 and 1.1-17 dated 2008-11-26
Title: Data Analysis Using Regression and Multilevel/Hierarchical Models
Description: R functions for processing lm, glm, mer and polr outputs.
CHANGELOG | 27 +++++++++++++--
DESCRIPTION | 6 +--
R/AllInternal.R | 77 +++++++++++++++++++++++++++++++++++++++++++-
R/coefplot.R | 28 ++++++++--------
R/matching.R | 87 +++++++++++++++++++++++++++++++++++++++++++++-----
R/se.coef.R | 2 -
R/sim.R | 10 ++---
man/coefplot.Rd | 6 +--
man/matching.Rd | 9 +++--
man/multicomp.plot.Rd | 2 -
man/sim.Rd | 13 ++++++-
11 files changed, 223 insertions(+), 44 deletions(-)
More information about RcmdrPlugin.orloca at CRAN
Permanent link
Author: Ravi Varadhan
Title: Solving and optimizing large-scale nonlinear systems
Description: Barzilai-Borwein Spectral Methods for solving nonlinear system of
equations, and for optimizing nonlinear objective functions subject to simple
constraints.
Diff between BB versions 2008.8-1 dated 2008-08-06 and 2008.11-1 dated 2008-11-26
DESCRIPTION | 6 NEWS | 23 +++ R/dfsane.R | 391 ++++++++++++++++++++++++++++++------------------------- R/sane.R | 376 ++++++++++++++++++++++++++++------------------------ Rplots.pdf |only inst/doc/BB.pdf |binary man/dfsane.Rd | 102 +++++++++----- man/sane.Rd | 155 ++++++++++++++------- man/spg.Rd | 2 tests/broyds.R |only tests/broydt2.R |only tests/ccreact.R |only tests/dfsane.R | 11 - tests/expo3.R |only tests/extrosbk.R |only tests/sane.R | 5 tests/trigexp.R |only tests/troesch.R |only 18 files changed, 628 insertions(+), 443 deletions(-)