Fri, 28 Nov 2008

Package sets updated to version 0.4 with previous version 0.3-2 dated 2008-08-12

Author: David Meyer and Kurt Hornik (with contributions by Christian Buchta)
Title: Sets, Generalized Sets, and Customizable Sets.
Description: Data structures and basic operations for ordinary sets, generalizations such as fuzzy sets, multisets, and fuzzy multisets, and customizable sets.

Diff between sets versions 0.3-2 dated 2008-08-12 and 0.4 dated 2008-11-28

 sets-0.3-2/sets/R/fuzzy.R                 |only
 sets-0.3-2/sets/inst/doc/.build.timestamp |only
 sets-0.3-2/sets/inst/doc/set.Rnw          |only
 sets-0.3-2/sets/inst/doc/set.pdf          |only
 sets-0.4/sets/DESCRIPTION                 |    6 
 sets-0.4/sets/NAMESPACE                   |  120 +++++++++++------
 sets-0.4/sets/NEWS                        |   12 +
 sets-0.4/sets/R/cardinality.R             |   23 ++-
 sets-0.4/sets/R/complement.R              |   10 -
 sets-0.4/sets/R/converters.R              |   24 ++-
 sets-0.4/sets/R/cset.R                    |   31 ++--
 sets-0.4/sets/R/element.R                 |    2 
 sets-0.4/sets/R/extractors.R              |   47 ++++++
 sets-0.4/sets/R/fuzzyfuns.R               |only
 sets-0.4/sets/R/fuzzylogic.R              |only
 sets-0.4/sets/R/gset.R                    |   98 ++++++++------
 sets-0.4/sets/R/intersection.R            |   10 -
 sets-0.4/sets/R/labels.R                  |    4 
 sets-0.4/sets/R/mean.R                    |only
 sets-0.4/sets/R/memberships.R             |   39 +++++
 sets-0.4/sets/R/options.R                 |    4 
 sets-0.4/sets/R/outer.R                   |   10 -
 sets-0.4/sets/R/plot.R                    |  210 ++++++++++++++++++++++++++++--
 sets-0.4/sets/R/product.R                 |only
 sets-0.4/sets/R/set.R                     |   61 +++++---
 sets-0.4/sets/R/summary.R                 |    2 
 sets-0.4/sets/R/utilities.R               |   63 +++++++--
 sets-0.4/sets/inst/NEWS                   |   12 +
 sets-0.4/sets/inst/doc/sets.Rnw           |only
 sets-0.4/sets/inst/doc/sets.pdf           |only
 sets-0.4/sets/man/cset.Rd                 |   43 +++++-
 sets-0.4/sets/man/fuzzy.Rd                |   11 +
 sets-0.4/sets/man/fuzzyfuns.Rd            |only
 sets-0.4/sets/man/gset.Rd                 |   90 ++++++++++--
 sets-0.4/sets/man/labels.Rd               |    2 
 sets-0.4/sets/man/options.Rd              |   18 +-
 sets-0.4/sets/man/outer.Rd                |   14 +-
 sets-0.4/sets/man/plot.Rd                 |only
 sets-0.4/sets/man/set.Rd                  |   17 +-
 sets-0.4/sets/paper                       |only
 40 files changed, 772 insertions(+), 211 deletions(-)

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Package graph updated to version 1.20.0 with previous version 1.19.6 dated 2008-10-08

Author: R. Gentleman, Elizabeth Whalen, W. Huber, S. Falcon
Title: graph: A package to handle graph data structures
Description: A package that implements some simple graph handling capabilities.

Diff between graph versions 1.19.6 dated 2008-10-08 and 1.20.0 dated 2008-11-28

 DESCRIPTION                  |    4 
 inst/doc/GraphClass.pdf      |    6 
 inst/doc/clusterGraph.pdf    |binary
 inst/doc/graph.pdf           |  275 +++++++++++++++++++++----------------------
 inst/doc/graphAttributes.pdf |binary
 5 files changed, 145 insertions(+), 140 deletions(-)

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Package TWIX updated to version 0.2.6 with previous version 0.2.5 dated 2008-11-27

Author: Sergej Potapov
Title: Trees WIth eXtra splits
Description: Trees with extra splits

Diff between TWIX versions 0.2.5 dated 2008-11-27 and 0.2.6 dated 2008-11-28

 DESCRIPTION              |    8 ++++----
 R/twix.R                 |    7 ++++---
 clean.sh                 |   28 ++++++++++++++++++++++++----
 man/Devplot.Rd           |    4 ++--
 man/bagg.default.Rd      |   12 ++++++++----
 man/bootwix.Rd           |   13 +++++++++----
 man/deviance.twix.Rd     |    2 +-
 man/export.Rd            |    4 ++--
 man/get.splitvar.Rd      |    2 +-
 man/get.tree.Rd          |    2 +-
 man/olives.Rd            |    6 ++----
 man/plot.twix.Rd         |    3 +--
 man/predict.twix.Rd      |    2 +-
 man/print.single.tree.Rd |    2 +-
 man/scree.plot.Rd        |    2 +-
 man/trace.plot.Rd        |    2 +-
 man/tuneTWIX.Rd          |    2 +-
 man/twix.Rd              |    6 +++---
 18 files changed, 67 insertions(+), 40 deletions(-)

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Package RBGL updated to version 1.18.0 with previous version 1.17.2 dated 2008-10-08

Author: Vince Carey , Li Long , R. Gentleman
Title: An interface to the BOOST graph library
Description: A fairly extensive and comprehensive interface to the graph algorithms contained in the BOOST library.

Diff between RBGL versions 1.17.2 dated 2008-10-08 and 1.18.0 dated 2008-11-28

 DESCRIPTION       |    4 
 inst/doc/RBGL.pdf | 1141 ++++++++++++++++++++++++++----------------------------
 2 files changed, 571 insertions(+), 574 deletions(-)

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Package sem updated to version 0.9-14 with previous version 0.9-13 dated 2008-09-22

Author: John Fox
Title: Structural Equation Models
Description: This package contains functions for fitting general linear structural equation models (with observed and unobserved variables) by the method of maximum likelihood using the RAM approach, and for fitting structural equations in observed-variable models by two-stage least squares.

Diff between sem versions 0.9-13 dated 2008-09-22 and 0.9-14 dated 2008-11-28

 DESCRIPTION     |    7 ++++---
 R/boot.sem.R    |    4 ++--
 R/sem.R         |    9 ++++-----
 R/summary.sem.R |   12 +++++++++++-
 inst/CHANGES    |   10 ++++++++++
 5 files changed, 31 insertions(+), 11 deletions(-)

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Package effects updated to version 2.0-0 with previous version 1.0-12 dated 2008-04-06

Author: John Fox and Jangman Hong. We are grateful to Robert Andersen, David Firth, and Michael Friendly, for various suggestions.
Title: Effect Displays for Linear, Generalized Linear, Multinomial-Logit, and Proportional-Odds Logit Models
Description: Graphical and tabular effect displays, e.g., of interactions, for linear generalized linear, multinomial-logit, and proportional-odds logit models.

Diff between effects versions 1.0-12 dated 2008-04-06 and 2.0-0 dated 2008-11-28

 effects-1.0-12/effects/R/effects-plots.R             |only
 effects-1.0-12/effects/data/Arrests.txt              |only
 effects-1.0-12/effects/data/Cowles.txt               |only
 effects-1.0-12/effects/data/Prestige.txt             |only
 effects-2.0-0/effects/DESCRIPTION                    |   15 -
 effects-2.0-0/effects/NAMESPACE                      |   19 +-
 effects-2.0-0/effects/R/effects.R                    |only
 effects-2.0-0/effects/R/plot-summary-print-methods.R |only
 effects-2.0-0/effects/R/utilities.R                  |only
 effects-2.0-0/effects/data/BEPS.rda                  |only
 effects-2.0-0/effects/data/WVS.rda                   |only
 effects-2.0-0/effects/inst/CHANGES                   |    7 
 effects-2.0-0/effects/man/BEPS.Rd                    |only
 effects-2.0-0/effects/man/WVS.Rd                     |only
 effects-2.0-0/effects/man/effect.Rd                  |  167 +++++++++++--------
 effects-2.0-0/effects/man/effects-deprecated.Rd      |only
 effects-2.0-0/effects/man/summary.effect.Rd          |  160 +++++++++++-------
 17 files changed, 234 insertions(+), 134 deletions(-)

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Package SubpathwayMiner updated to version 1.1 with previous version 1.0 dated 2008-11-27

Author: Chunquan Li
Title: Annotation and identification of the KEGG pathways.
Description: SubpathwayMiner facilitates sub-pathway annotation and identification of metabolic pathways. It also provides annotation and identification of entire pathways.

Diff between SubpathwayMiner versions 1.0 dated 2008-11-27 and 1.1 dated 2008-11-28

 DESCRIPTION                  |    8 ++++----
 inst/doc/Rplots.pdf          |    4 ++--
 inst/doc/SubpathwayMiner.pdf |binary
 man/gotoKEGG.Rd              |    4 ++--
 man/plotAnn.Rd               |    2 +-
 5 files changed, 9 insertions(+), 9 deletions(-)

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Package Iso updated to version 0.0-6 with previous version 0.0-5 dated 2008-06-12

Author: Rolf Turner
Title: Functions to perform isotonic regression.
Description: Does linear order and unimodal order isotonic regression.

Diff between Iso versions 0.0-5 dated 2008-06-12 and 0.0-6 dated 2008-11-28

 DESCRIPTION |    6 +++---
 INDEX       |    8 ++++----
 R/First.R   |    3 +++
 R/pava.R    |   24 ++++++++++++++++--------
 R/pava.sa.R |   38 +++++++++++++++++++++++++-------------
 R/ufit.R    |   19 +++++++++++++++----
 man/pava.Rd |   43 ++++++++++++++++++++++++++++++++++++-------
 man/ufit.Rd |   48 ++++++++++++++++++++++++++++--------------------
 8 files changed, 130 insertions(+), 59 deletions(-)

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Package EMD updated to version 1.2.0 with previous version 1.1.0 dated 2008-05-08

Author: Donghoh Kim , Hee-Seok Oh
Title: Empirical Mode Decomposition and Hilbert Spectral Analysis
Description: This package carries out empirical mode decompostion and Hilbert spectral analysis.

Diff between EMD versions 1.1.0 dated 2008-05-08 and 1.2.0 dated 2008-11-28

 DESCRIPTION         |    6 -
 R/EMD1d.R           |   32 +++++-----
 R/Hilbert.R         |    2 
 man/EMD-internal.Rd |   26 ++++----
 man/cvtype.Rd       |   66 ++++++++++-----------
 man/emd.Rd          |  134 ++++++++++++++++++++++----------------------
 man/emd.pred.Rd     |   52 ++++++++---------
 man/emd2d.Rd        |  102 ++++++++++++++++-----------------
 man/emddenoise.Rd   |  148 ++++++++++++++++++++++++------------------------
 man/extractimf.Rd   |  108 +++++++++++++++++------------------
 man/extractimf2d.Rd |  102 ++++++++++++++++-----------------
 man/extrema.Rd      |   78 ++++++++++++-------------
 man/extrema2dC.Rd   |   86 ++++++++++++++--------------
 man/hilbertspec.Rd  |  104 +++++++++++++++++-----------------
 man/imageEMD.Rd     |   52 ++++++++---------
 man/kospi200.Rd     |   38 ++++++------
 man/lena.Rd         |   36 +++++------
 man/lennon.Rd       |   36 +++++------
 man/solar.Rd        |  158 ++++++++++++++++++++++++++--------------------------
 man/spectrogram.Rd  |  122 ++++++++++++++++++++--------------------
 man/sunspot.Rd      |   54 ++++++++---------
 21 files changed, 771 insertions(+), 771 deletions(-)

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