Author: Martyn Plummer
Title: Bayesian graphical models using MCMC
Description: Interface to the JAGS MCMC library
Diff between rjags versions 1.0.3-8 dated 2009-03-10 and 1.0.3-9 dated 2009-05-29
DESCRIPTION | 14 ++++++++------ NAMESPACE | 4 +++- R/jags.R | 6 +++--- R/read.data.R |only man/jags.model.Rd | 2 +- man/jags.object.Rd | 11 ++++++++++- man/read.data.Rd |only 7 files changed, 25 insertions(+), 12 deletions(-)
Author: Anne-Laure Boulesteix
Diff between plsgenomics versions 1.2-2 dated 2007-02-15 and 1.2-4 dated 2009-05-29
Title: PLS analyses for genomics
Description: This package provides routines for PLS-based genomic
analyses. It implements PLS methods for classification with
microarray data and prediction of transcription factor
activities from combined ChIP-chip analysis. The >=1.2-1
versions include two new classification methods for microarray
data: GSIM and Ridge PLS.
plsgenomics-1.2-2/plsgenomics/COPYING |only
plsgenomics-1.2-4/plsgenomics/DESCRIPTION | 34 ++++++++--------
plsgenomics-1.2-4/plsgenomics/copying |only
plsgenomics-1.2-4/plsgenomics/man/Colon.Rd | 2
plsgenomics-1.2-4/plsgenomics/man/SRBCT.Rd | 3 -
plsgenomics-1.2-4/plsgenomics/man/TFA.estimate.Rd | 2
plsgenomics-1.2-4/plsgenomics/man/gsim.Rd | 2
plsgenomics-1.2-4/plsgenomics/man/gsim.cv.Rd | 2
plsgenomics-1.2-4/plsgenomics/man/mgsim.Rd | 2
plsgenomics-1.2-4/plsgenomics/man/mgsim.cv.Rd | 2
plsgenomics-1.2-4/plsgenomics/man/mrpls.Rd | 6 +-
plsgenomics-1.2-4/plsgenomics/man/mrpls.cv.Rd | 6 +-
plsgenomics-1.2-4/plsgenomics/man/pls.lda.Rd | 2
plsgenomics-1.2-4/plsgenomics/man/pls.lda.cv.Rd | 2
plsgenomics-1.2-4/plsgenomics/man/pls.regression.Rd | 2
plsgenomics-1.2-4/plsgenomics/man/pls.regression.cv.Rd | 2
plsgenomics-1.2-4/plsgenomics/man/preprocess.Rd | 2
plsgenomics-1.2-4/plsgenomics/man/rpls.Rd | 2
plsgenomics-1.2-4/plsgenomics/man/rpls.cv.Rd | 2
plsgenomics-1.2-4/plsgenomics/man/variable.selection.Rd | 2
20 files changed, 40 insertions(+), 37 deletions(-)
Author: Göran Broström
Title: Generalized linear models with clustering
Description: A Maximum Likelihood and bootstrap approach to mixed
models
Diff between glmmML versions 0.81-4 dated 2009-02-11 and 0.81-5 dated 2009-05-29
ChangeLog | 3 +++ DESCRIPTION | 13 ++++++++----- src/glmmb0.c | 4 ++-- 3 files changed, 13 insertions(+), 7 deletions(-)
Author: Friedrich Leisch and Bettina Gruen
Title: Flexible Mixture Modeling
Description: FlexMix implements a general framework for finite mixtures
of regression models using the EM algorithm. FlexMix provides
the E-step and all data handling, while the M-step can be
supplied by the user to easily define new models. Existing
drivers implement mixtures of standard linear models,
generalized linear models and model-based clustering.
Diff between flexmix versions 2.2-0 dated 2008-10-03 and 2.2-3 dated 2009-05-29
flexmix-2.2-0/flexmix/R/FLXMCmvpois.R |only flexmix-2.2-0/flexmix/R/classes.R |only flexmix-2.2-3/flexmix/DESCRIPTION | 22 flexmix-2.2-3/flexmix/NAMESPACE | 8 flexmix-2.2-3/flexmix/NEWS | 13 flexmix-2.2-3/flexmix/R/allClasses.R |only flexmix-2.2-3/flexmix/R/allGenerics.R | 7 flexmix-2.2-3/flexmix/R/flexmix.R | 40 flexmix-2.2-3/flexmix/R/flxdist.R |only flexmix-2.2-3/flexmix/R/flxmcmvpois.R |only flexmix-2.2-3/flexmix/R/glmFix.R | 4 flexmix-2.2-3/flexmix/R/group.R |only flexmix-2.2-3/flexmix/R/infocrit.R | 10 flexmix-2.2-3/flexmix/R/models.R | 67 flexmix-2.2-3/flexmix/R/plot-flexmix.R | 4 flexmix-2.2-3/flexmix/R/rFLXmodel.R |only flexmix-2.2-3/flexmix/R/refit.R | 24 flexmix-2.2-3/flexmix/R/rflexmix.R |only flexmix-2.2-3/flexmix/R/utils.R | 28 flexmix-2.2-3/flexmix/inst/CITATION | 18 flexmix-2.2-3/flexmix/inst/NEWS | 13 flexmix-2.2-3/flexmix/inst/doc/flexmix-intro.pdf | 4393 +++++++++------ flexmix-2.2-3/flexmix/inst/doc/mixture-regressions.pdf |binary flexmix-2.2-3/flexmix/inst/doc/mixture.bib | 34 flexmix-2.2-3/flexmix/inst/doc/regression-examples.pdf | 4948 +++++++++++------ flexmix-2.2-3/flexmix/man/FLXMCmvcombi.Rd |only flexmix-2.2-3/flexmix/man/FLXdist-class.Rd | 9 flexmix-2.2-3/flexmix/man/FLXdist.Rd |only flexmix-2.2-3/flexmix/man/group.Rd |only flexmix-2.2-3/flexmix/man/refit.Rd | 9 flexmix-2.2-3/flexmix/man/rflexmix.Rd |only flexmix-2.2-3/flexmix/tests/binomial.Rout.save | 6 32 files changed, 6133 insertions(+), 3524 deletions(-)
Author: Anne-Laure Boulesteix
Diff between exactmaxsel versions 1.0-2 dated 2007-02-15 and 1.0-4 dated 2009-05-29
Title: Maximally selected statistics for binary response variables -
Exact methods
Description: This package computes the exact distribution of some
maximally selected statistics in the following setting: the
'response' variable is binary, the splitting variable may be
nominal, ordinal or continuous. Currently, the package
implements the chi-square statistic and the Gini-index.
exactmaxsel-1.0-2/exactmaxsel/COPYING |only
exactmaxsel-1.0-4/exactmaxsel/DESCRIPTION | 27 ++++++++++++-----------
exactmaxsel-1.0-4/exactmaxsel/copying |only
exactmaxsel-1.0-4/exactmaxsel/man/Fcat.Rd | 8 +++---
exactmaxsel-1.0-4/exactmaxsel/man/Ford.Rd | 6 ++---
exactmaxsel-1.0-4/exactmaxsel/man/Ford2.rd | 12 ++++------
exactmaxsel-1.0-4/exactmaxsel/man/birth.Rd | 5 +---
exactmaxsel-1.0-4/exactmaxsel/man/boundary.Rd | 4 +--
exactmaxsel-1.0-4/exactmaxsel/man/ginigain.Rd | 4 +--
exactmaxsel-1.0-4/exactmaxsel/man/maxsel.Rd | 20 +++++++----------
exactmaxsel-1.0-4/exactmaxsel/man/maxsel.test.Rd | 19 +++++++---------
11 files changed, 51 insertions(+), 54 deletions(-)
Author: Tomoaki Nakatani
Diff between ccgarch versions 0.1.4-1 dated 2009-05-11 and 0.1.4-2 dated 2009-05-29
Title: Conditional Correlation GARCH models
Description: Functions for estimating and simulating the family of the
CC-GARCH models.
DESCRIPTION | 8 ++++----
R/grad_dcc2.R | 9 ++++++---
R/loglik_dcc.R | 5 +++--
man/loglik_dcc.Rd | 25 ++++++++++++++++++++++++-
4 files changed, 37 insertions(+), 10 deletions(-)
Author: Marc Schwartz
Diff between WriteXLS versions 1.6.0 dated 2009-03-31 and 1.7.1 dated 2009-05-29
Title: Cross-platform Perl based R function to create Excel 2003 (XLS)
files
Description: Cross-platform perl based R function to create Excel (XLS)
files from one or more data frames. Each data frame will be
written to a separate named worksheet in the Excel spreadsheet.
The worksheet name will be the name of the data frame it
contains or can be specified by the user.
DESCRIPTION | 17 ++++------
R/WriteXLS.R | 73 ++++++++++++++++++++++++++++++++++++++++--
R/testPerl.R | 37 ++++++++++++---------
inst/Perl/WriteXLS.pl | 36 +++++++++++++++++----
man/WriteXLS.Rd | 85 ++++++++++++++++++++++++++++++++++++++------------
man/testPerl.Rd | 5 +-
6 files changed, 195 insertions(+), 58 deletions(-)
Author: Anne-Laure Boulesteix
Diff between WilcoxCV versions 1.0-1 dated 2007-04-11 and 1.0-2 dated 2009-05-29
Title: Wilcoxon-based variable selection in cross-validation
Description: This package provides functions to perform fast variable
selection based on the Wilcoxon rank sum test in the
cross-validation or Monte-Carlo cross-validation settings, for
use in microarray-based binary classification.
DESCRIPTION | 21 +++++++++++++--------
R/wilcox.selection.split.R | 8 ++------
R/wilcox.split.R | 15 +++++++++------
R/wilcox.split31.07essai.R |only
man/generate.cv.Rd | 4 ++--
man/generate.split.Rd | 4 ++--
man/wilcox.selection.split.Rd | 4 ++--
man/wilcox.split.Rd | 4 ++--
8 files changed, 32 insertions(+), 28 deletions(-)
Author: Anne-Laure Boulesteix
Diff between SNPmaxsel versions 1.0-1 dated 2007-06-11 and 1.0-3 dated 2009-05-29
Title: Maximally selected statistics for SNP data
Description: This package implements asymptotic methods related to
maximally selected statistics, with applications to SNP data.
DESCRIPTION | 19 +++++++++++--------
man/Fasymp.rd | 8 ++++----
man/maxsel.asymp.test.rd | 4 ++--
man/maxsel.rd | 4 ++--
man/transf.inter.rd | 4 ++--
5 files changed, 21 insertions(+), 18 deletions(-)
Author: Anne-Laure Boulesteix
Diff between MAclinical versions 1.0-2 dated 2008-09-28 and 1.0-4 dated 2009-05-29
Title: Class prediction based on microarray data and clinical
parameters
Description: 'Maclinical' implements class prediction using both
microarray data and clinical parameters. It addresses the
question of the additional predictive value of microarray data.
Class prediction is performed using a two-step method combining
(pre-validated) PLS dimension reduction and random forests.
DESCRIPTION | 23 +++++++++++++++--------
man/generate.learningsets.rd | 6 +++---
man/logistic_z.rd | 2 +-
man/plsrf_x.rd | 2 +-
man/plsrf_x_pv.rd | 2 +-
man/plsrf_xz.rd | 2 +-
man/plsrf_xz_pv.rd | 2 +-
man/rf_z.rd | 4 ++--
man/simulate.rd | 2 +-
man/svm.rd | 2 +-
man/testclass.rd | 2 +-
man/testclass_simul.rd | 2 +-
12 files changed, 29 insertions(+), 22 deletions(-)
Author: Robert B. Gramacy
Diff between tgp versions 2.2-1 dated 2009-02-20 and 2.2-2 dated 2009-05-29
Title: Bayesian treed Gaussian process models
Description: Bayesian nonstationary, semiparametric nonlinear
regression and design by treed Gaussian processes with jumps to
the limiting linear model (LLM). Special cases also
implemented include Bayesian linear models, CART, treed linear
models, stationary separable and isotropic Gaussian processes.
Provides 1-d and 2-d plotting functions (with projection and
slice capabilities) and tree drawing, designed for
visualization of tgp-class output. Sensitivity analysis and
multi-resolution models are supported. Sequential experimental
design and adaptive sampling functions are also provided,
including ALM, ALC, and expected improvement. The latter
supports derivative-free optimization of noisy black-box
functions.
ChangeLog | 12 +++++++++++-
DESCRIPTION | 37 +++++++++++++++++++++----------------
R/tgp.R | 2 +-
inst/doc/tgp.Rnw | 2 +-
inst/doc/tgp2.Rnw | 2 +-
5 files changed, 35 insertions(+), 20 deletions(-)
Author: Duncan Murdoch
Title: Support for orientation data
Description: Representations, conversions and display of orientation
SO(3) data. See the orientlib help topic for details.
Diff between orientlib versions 0.9.1 dated 2009-01-26 and 0.9.2 dated 2009-05-29
orientlib-0.9.1/orientlib/INDEX |only orientlib-0.9.2/orientlib/DESCRIPTION | 31 +++++----- orientlib-0.9.2/orientlib/NEWS | 8 ++ orientlib-0.9.2/orientlib/R/boats.r | 49 +++-------------- orientlib-0.9.2/orientlib/inst/CITATION |only orientlib-0.9.2/orientlib/man/boat3d.Rd | 17 +---- orientlib-0.9.2/orientlib/man/orientlib.Rd | 13 +++- orientlib-0.9.2/orientlib/man/weighted.mean-methods.Rd | 7 +- 8 files changed, 53 insertions(+), 72 deletions(-)
Author: Roger Bivand
Diff between classInt versions 0.1-9 dated 2008-01-19 and 0.1-11 dated 2009-05-29
Title: Choose univariate class intervals
Description: A package for choosing univariate class intervals for
mapping or other graphics purposes
ChangeLog | 19 +++++++++++
DESCRIPTION | 14 +++++---
R/classInt.R | 83 ++++++++++++++++++++++++++++++++++++++++----------
man/classIntervals.Rd | 20 ++++++++++--
man/findColours.Rd | 2 -
5 files changed, 114 insertions(+), 24 deletions(-)
Author: Michael Hoehle with contributions by Wei Liu
Title: Confidence intervals and sample size determination for a
binomial proportion under simple random sampling and pooled
sampling
Description: A suite of functions to compute confidence intervals and
necessary sample sizes for the parameter p of the Bernoulli
B(p) distribution under simple random sampling or under pooled
sampling. Such computations are e.g. of interest when
investigating the incidence or prevalence in populations. The
package contains functions to compute coverage probabilities
and coverage coefficients of the provided confidence intervals
procedures. Sample size calculations are based on expected
length.
Diff between binomSamSize versions 0.1-1 dated 2009-05-18 and 0.1-2 dated 2009-05-29
DESCRIPTION | 8 ++++---- man/binom.liubailey.Rd | 14 +++++++++++--- man/binomSamSize-package.Rd | 8 +++++++- man/ciss.liubailey.Rd | 28 +++++++++++++++------------- 4 files changed, 37 insertions(+), 21 deletions(-)
More information about RthroughExcelWorkbooksInstaller at CRAN
Permanent link
Author: Merlise Clyde
Diff between BAS versions 0.1 dated 2009-03-02 and 0.3 dated 2009-05-29
Title: Bayesian Model Averaging using Bayesian Adaptive Sampling
Description: Package for Bayesian Model Averaging in linear models
using stochastic or deterministic sampling without replacement
from posterior distributions. Prior distributions on
coefficients are from Zellner's g-prior or mixtures of g-priors
corresponding to the Zellner-Siow Cauchy Priors or the Liang et
al hyper-g priors (to appear JASA 2008). Other model selection
criterian include AIC and BIC. Sampling probabilities may be
updated based on the sampled models. Allows uniform or
beta-binomial prior distributions on models.
CHANGELOG |only
DESCRIPTION | 44 +++++++++++-----------
INDEX | 4 ++
R/EB.bma.R | 11 +++--
R/bas.R | 61 ++++++++++++++++++------------
R/image.bma.R | 2 -
R/modelpriors.R |only
R/predict.bma.R | 12 ++++--
R/update.bma.R | 4 +-
demo/BAS.USCrime.R | 1
demo/BAS.hald.R | 11 ++++-
man/Bernoulli.Rd |only
man/Uniform.Rd |only
man/bas.Rd | 84 +++++++++++++++++++++++++-----------------
man/beta.binomial.Rd |only
man/fitted.bma.Rd | 2 -
man/image.bma.Rd | 10 ++---
man/plot.bma.Rd | 17 +++++++-
man/predict.bma.Rd | 17 +++++---
src/bayesglm.c |only
src/bayesreg.c | 99 ++++++++++++++++++++------------------------------
src/deterministic.c | 11 +++--
src/mem.c | 17 ++++++++
src/probabilities.c |only
src/sampleworep.c | 19 ++++++---
src/sampling.h | 12 +++++-
src/tree-structures.c | 8 +++-
27 files changed, 265 insertions(+), 181 deletions(-)
Author: Kurt Hornik, with contributions from Christian Buchta, Torsten
Hothorn, Alexandros Karatzoglou, David Meyer, and Achim Zeileis
Title: R/Weka interface
Description: An R interface to Weka (Version 3.6.0). Weka is a
collection of machine learning algorithms for data mining tasks
written in Java, containing tools for data pre-processing,
classification, regression, clustering, association rules, and
visualization. Both the R interface and Weka itself are
contained in the RWeka package. For more information on Weka
see http://www.cs.waikato.ac.nz/~ml/weka/.
Diff between RWeka versions 0.3-17 dated 2009-04-29 and 0.3-18 dated 2009-05-28
CHANGELOG | 4 ++++ DESCRIPTION | 8 ++++---- NAMESPACE | 3 ++- R/control.R | 13 +++++++++---- R/tokenizers.R | 4 +++- R/zzz.R | 27 ++++++++++++++++++++++----- inst/CITATION | 33 ++++++++++++++------------------- man/WOW.Rd | 5 +++++ man/Weka_classifier_lazy.Rd | 2 +- man/Weka_classifier_meta.Rd | 6 ++++++ man/Weka_classifier_trees.Rd | 2 +- man/Weka_clusterers.Rd | 2 +- man/Weka_interfaces.Rd | 5 +++++ man/read.arff.Rd | 2 +- man/write.arff.Rd | 2 +- 15 files changed, 79 insertions(+), 39 deletions(-)
Author: Duncan Temple Lang
Title: General network (HTTP/FTP/...) client interface for R
Description: The package allows one to compose general HTTP requests
and provides convenient functions to fetch URIs, get & post
forms, etc. and process the results returned by the Web server.
This provides a great deal of control over the HTTP/FTP/...
connection and the form of the request while providing a
higher-level interface than is available just using R socket
connections. Additionally, the underlying implementation is
robust and extensive, supporting FTP/FTPS/TFTP (uploads and
downloads), SSL/HTTPS, telnet, dict, ldap, and also supports
cookies, redirects, authentication, etc.
Diff between RCurl versions 0.95-1 dated 2009-05-18 and 0.97-3 dated 2009-05-28
Changes.html | 76 + CodeGeneration/foo.html |only CodeGeneration/generate.R | 89 + CodeGeneration/generateDocs.R |only DESCRIPTION | 10 NAMESPACE | 6 R/aclassesEnums.R |only R/curlEnums.R |only R/dynamic.R | 8 R/form.S | 2 R/options.S | 23 R/xbits.R |only configure | 2185 ++++++++++++++++++++++++++++++++++++++++++ configure.in | 64 + inst/CurlSSL |only inst/doc/cookies.xml |only inst/doc/fileUploads.html |only inst/doc/fileUploads.pdf |only man/HTTP_VERSION_1_0.Rd |only man/curlOptions.Rd | 10 man/dynCurlReader.Rd | 2 man/enums.Rd |only man/getURL.Rd | 7 src/CURLINFOTable.h |only src/CURLOptTable.h |only src/CurlInfoEnums.h | 5 src/CurlOptEnums.h | 10 src/Makevars | 2 src/curl.c | 56 + 29 files changed, 2538 insertions(+), 17 deletions(-)
Author: Christophe Ambroise
Diff between simone versions 0.1-2 dated 2009-02-23 and 0.1-3 dated 2009-05-28
Title: Statistical Inference for MOdular NEtworks (SIMoNe)
Description: The SIMoNe algorithm iteratively combines edge estimation
and node classification on the basis of a mixture model for
edge weight distributions. Edges inference may be managed via
two alternative methods: GLasso and Meinhausan-Buhlman's
approach. Node Classification is managed by MixNet, a mixture
model for random graphs.
DESCRIPTION | 22 ++++++++++++++++------
NEWS | 3 +++
src/JRx_.cpp | 2 +-
src/matrix.h | 4 ++--
4 files changed, 22 insertions(+), 9 deletions(-)
Author: Matthew Denwood
Diff between runjags versions 0.9.3-3 dated 2009-01-08 and 0.9.4-2 dated 2009-05-28
Title: Run Bayesian MCMC Models in the BUGS syntax from Within R
Description: A set of functions to allow any user specified model to be
run in JAGS from within R, returning the MCMC chains as R
objects. Includes functions to read external WinBUGS type
textfiles, and allows several ways of automatically specifying
model data from existing R objects or R functions. Also
includes functions to automatically calculate model run length,
autocorrealtion and Gelman Rubin statistic diagnostics for all
models to simplify the process of achieving chain convergence.
Designed for maximum compatibility with WinBUGS syntax,
although minor modification to existing .bug files will be
required. Requires Just Another Gibbs Sampler (JAGS) for most
functions, see: http://www-fis.iarc.fr/~martyn/software/jags/
DESCRIPTION | 24 +++++++++++++++++++-----
R/autorun.jags.R | 4 ++--
R/combine.mcmc.R | 26 +++++++++++++++++++-------
R/dump.format.R | 12 ++++++++++--
R/invisible.R | 18 +++++++++---------
R/timestring.R | 3 ++-
inst/CITATION | 2 +-
inst/version_history.txt | 28 ++++++++++++++++++++++++++++
man/autorun.jags.Rd | 7 +++++--
man/combine.mcmc.Rd | 2 +-
man/dump.format.Rd | 4 +++-
man/run.jags.Rd | 10 +++++-----
12 files changed, 104 insertions(+), 36 deletions(-)
Author: Jelle Goeman
Diff between penalized versions 0.9-23 dated 2009-03-12 and 0.9-24 dated 2009-05-28
Title: L1 (lasso) and L2 (ridge) penalized estimation in GLMs and in
the Cox model
Description: A package for fitting possibly high dimensional penalized
regression models. The penalty structure can be any combination
of an L1 penalty (lasso), an L2 penalty (ridge) and a
positivity constraint on the regression coefficients. The
supported regression models are linear, logistic and poisson
regression and the Cox Proportional Hazards model.
Cross-validation routines allow optimization of the tuning
parameters.
DESCRIPTION | 10
R/cvl.R | 116
R/penfit.R | 4
changelog.txt | 6
inst/CITATION |only
inst/doc/Rplots.pdf |13166 +++++++++++++++++++++++--------------------------
inst/doc/penalized.Rnw | 2
inst/doc/penalized.bib | 11
inst/doc/penalized.pdf |binary
man/penfit.Rd | 2
10 files changed, 6503 insertions(+), 6814 deletions(-)
Author: Torsten Hothorn, Achim Zeileis, Giovanni Millo, David Mitchell
Title: Testing Linear Regression Models
Description: A collection of tests, data sets and examples for
diagnostic checking in linear regression models.
Diff between lmtest versions 0.9-23 dated 2009-02-05 and 0.9-24 dated 2009-05-28
COPYRIGHTS | 2 +- DESCRIPTION | 12 +++++++----- NAMESPACE | 1 + NEWS | 7 +++++++ R/coxtest.R | 2 +- R/jtest.R | 2 +- R/petest.R |only inst/doc/lmtest-intro.pdf |binary man/petest.Rd |only 9 files changed, 18 insertions(+), 8 deletions(-)
Author: Edzer J. Pebesma
Diff between sp versions 0.9-36 dated 2009-04-29 and 0.9-37 dated 2009-05-28
Title: classes and methods for spatial data
Description: A package that provides classes and methods for spatial
data. The classes document where the spatial location
information resides, for 2D or 3D data. Utility functions are
provided, e.g. for plotting data as maps, spatial selection, as
well as methods for retrieving coordinates, for subsetting,
print, summary, etc.
DESCRIPTION | 8
R/SpatialGridDataFrame-methods.R | 5
inst/doc/sp.pdf | 3595 +++++++++++++++++++--------------------
rlabs |only
tests/fail1.Rout.save | 10
tests/spplot.Rout.save | 15
6 files changed, 1836 insertions(+), 1797 deletions(-)
Author: Uwe Ligges
Diff between scatterplot3d versions 0.3-27 dated 2008-05-08 and 0.3-28 dated 2009-05-28
Title: 3D Scatter Plot
Description: Plots a three dimensional (3D) point cloud.
CHANGES | 3
DESCRIPTION | 24
R/scatterplot3d.R | 2
inst/doc/SFBs3d_Examples.tex | 8
inst/doc/s3d.pdf | 3694 +++++++++++++++++++++----------------------
5 files changed, 1842 insertions(+), 1889 deletions(-)
Author: Jonathan P. Weeks
Diff between plink versions 1.1-0 dated 2009-05-15 and 1.1-1 dated 2009-05-28
Title: IRT Separate Calibration Linking Methods
Description: This package uses item response theory methods to compute
linking constants and conduct chain linking of unidimensional
or multidimensional tests for multiple groups under a
nonequivalent groups common item design. The unidimensional
methods include the Mean/Mean, Mean/Sigma, Haebara, and
Stocking-Lord methods for dichotomous (1PL, 2PL and 3PL) and/or
polytomous (graded response, partial credit/generalized partial
credit, nominal, and multiple-choice model) items. The
multidimensional methods include the Reckase-Martineau method
and extensions of the Haebara and Stocking-Lord method using a
single dilation parameter, multiple dilation parameters, or the
Oshima, Davey, & Lee approach for multidimensional extensions
of all the unidimensional dichotomous and polytomous item
response models. The package also includes functions for
importing item and/or ability parameters from common IRT
software and ploting item characteristic/category curves or
surfaces and vector plots.
DESCRIPTION | 6 +++---
R/drm.R | 2 +-
R/gpcm.R | 2 +-
R/grm.R | 2 +-
R/mcm.R | 2 +-
R/mixed.R | 2 +-
R/nrm.R | 2 +-
R/read.bilog.R | 16 +++++++++++-----
inst/CITATION | 4 ++--
inst/NEWS | 9 +++++++++
10 files changed, 31 insertions(+), 16 deletions(-)
Author: Brian Lee Yung Rowe
Title: Futile function utilities
Description: A collection of utility functions to expedite software
development
Diff between futile versions 1.0 dated 2009-04-15 and 1.0.2 dated 2009-05-28
DESCRIPTION | 8 ++++---- R/general.R | 23 ++++++++++++++++++++--- man/anytypes.Rd |only man/futile-package.Rd | 19 +++++++++++++++---- man/mid.Rd | 14 +++++++------- 5 files changed, 46 insertions(+), 18 deletions(-)
Author: Mathieu Ribatet
Diff between SpatialExtremes versions 1.2-0 dated 2009-04-20 and 1.3-0 dated 2009-05-28
More information about SpatialExtremes at CRAN
Title: Modelling Spatial Extremes
Description: This package proposes several approaches for spatial
extremes modelling.
ChangeLog | 170
DESCRIPTION | 10
R/covariance.R | 30
R/fitcovmat.R | 76
R/geomgauss.R | 134
R/madogram.R | 189
R/methods.R | 3
R/nsgeomgauss.R | 64
R/plots.R | 17
R/profile.R | 16
R/randomlines.R |only
R/schlather.R | 74
R/schlatherind.R | 72
R/selection.R | 8
R/simgaussproc.R |only
R/simmaxstab.R |only
R/smith.R | 71
R/spatgev.R | 68
R/starting.values.R | 10
inst/doc/SpatialExtremesGuide.Rnw | 663
inst/doc/SpatialExtremesGuide.pdf |893427 +++++++++++++++++++++++++++++++++++---
inst/doc/layout.sty | 20
inst/doc/references.bib | 184
man/TIC.Rd | 18
man/anova.Rd | 15
man/condmap.Rd | 19
man/covariance.Rd | 73
man/extcoeff.Rd | 9
man/extcoeffemp.Rd | 14
man/fitcovariance.Rd | 26
man/fitcovmat.Rd | 25
man/fitmaxstab.Rd | 58
man/fitspatgev.Rd | 14
man/fmadogram.Rd | 19
man/lmadogram.Rd | 8
man/logLik.maxstab.Rd | 12
man/madogram.Rd | 20
man/map.Rd | 15
man/predict.maxstab.Rd | 16
man/predict.spatgev.Rd | 15
man/print.maxstab.Rd | 13
man/print.spatgev.Rd | 16
man/profile.maxstab.Rd | 20
man/profile2d.maxstab.Rd | 21
man/qqextcoeff.Rd | 13
man/qqgev.Rd | 15
man/rgp.Rd |only
man/simmaxstab.Rd |only
man/vdc.Rd |only
src/Makevars |only
src/covariance.c | 63
src/direct.c |only
src/fitcovmat.c | 14
src/geomgauss.c | 8
src/gradients.c | 66
src/header.h | 76
src/nsgeomgauss.c | 8
src/pairwiselik.c | 258
src/randomlines.c |only
src/schlather.c | 18
src/schlatherind.c | 10
src/simschlather.c |only
src/simsmith.c |only
src/smith.c | 10
src/smith3d.c | 6
src/turningbands.c |only
src/utils.c | 2
67 files changed, 845327 insertions(+), 50992 deletions(-)
Permanent link
Author: Richard M. Heiberger
Title: Statistical Analysis and Data Display: Heiberger and Holland
Description: Support software for Statistical Analysis and Data Display
(Springer, ISBN 0-387-40270-5). This contemporary presentation
of statistical methods features extensive use of graphical
displays for exploring data and for displaying the analysis.
The authors demonstrate how to analyze data---showing code,
graphics, and accompanying computer listings---for all the
methods they cover. They emphasize how to construct and
interpret graphs, discuss principles of graphical design, and
show how accompanying traditional tabular results are used to
confirm the visual impressions derived directly from the
graphs. Many of the graphical formats are novel and appear here
for the first time in print. All chapters have exercises.
Diff between HH versions 2.1-28 dated 2009-05-25 and 2.1-29 dated 2009-05-28
DESCRIPTION | 8 ++--- R/panel.bwplot.intermediate.hh.R | 8 ++++- R/panel.interaction2wt.R | 25 +++++++++++++++ man/panel.interaction2wt.Rd | 62 +++++++++++++++++++++++++++++++++++---- 4 files changed, 91 insertions(+), 12 deletions(-)
Author: Roger Bivand
Title: Interface between GRASS 6 geographical information system and R
Description: Interpreted interface between GRASS 6 geographical
information system and R, based on starting R from within the
GRASS environment.
Diff between spgrass6 versions 0.6-5 dated 2009-04-30 and 0.6-6 dated 2009-05-27
ChangeLog | 5 +++++ DESCRIPTION | 8 ++++---- R/xml1.R | 11 +++++++++-- inst/ChangeLog | 5 +++++ man/execGRASS.Rd | 5 ++++- 5 files changed, 27 insertions(+), 7 deletions(-)
Author: Wolfgang Lederer
Diff between simex versions 1.2 dated 2006-02-26 and 1.4 dated 2009-05-27
Title: SIMEX- and MCSIMEX-Algorithm for measurement error models
Description: Implementation of the SIMEX-Algorithm by Cook & Stefanski
and MCSIMEX by Küchenhoff, Mwalili & Lesaffre
simex-1.2/simex/R/plot.MCSIMEX.R |only
simex-1.2/simex/R/plot.SIMEX.R |only
simex-1.2/simex/R/predict.MCSIMEX.R |only
simex-1.2/simex/R/predict.SIMEX.R |only
simex-1.2/simex/R/print.MCSIMEX.R |only
simex-1.2/simex/R/print.SIMEX.R |only
simex-1.2/simex/R/print.summary.MCSIMEX.R |only
simex-1.2/simex/R/print.summary.SIMEX.R |only
simex-1.2/simex/R/summary.MCSIMEX.R |only
simex-1.2/simex/R/summary.SIMEX.R |only
simex-1.2/simex/man/check.mc.matrix.Rd |only
simex-1.2/simex/man/construct.s.Rd |only
simex-1.2/simex/man/extract.covmat.Rd |only
simex-1.2/simex/man/fit.logl.Rd |only
simex-1.2/simex/man/fit.nls.Rd |only
simex-1.2/simex/man/overview.Rd |only
simex-1.2/simex/man/plot.SIMEX.Rd |only
simex-1.2/simex/man/predict.MCSIMEX.Rd |only
simex-1.2/simex/man/predict.SIMEX.Rd |only
simex-1.2/simex/man/print.SIMEX.Rd |only
simex-1.2/simex/man/refit.Rd |only
simex-1.2/simex/man/summary.MCSIMEX.Rd |only
simex-1.2/simex/man/summary.SIMEX.Rd |only
simex-1.4/simex/DESCRIPTION | 26 +-
simex-1.4/simex/NAMESPACE |only
simex-1.4/simex/NEWS |only
simex-1.4/simex/R/build.mc.matrix.R | 179 ++++++++--------
simex-1.4/simex/R/check.mc.matrix.R | 18 -
simex-1.4/simex/R/construct.s.R | 75 ++++--
simex-1.4/simex/R/diag.block.R | 27 +-
simex-1.4/simex/R/extract.covmat.R | 20 -
simex-1.4/simex/R/fit.logl.R | 42 ++-
simex-1.4/simex/R/fit.nls.R | 45 ++--
simex-1.4/simex/R/mcsimex.R | 326 +++++++++++++++++-------------
simex-1.4/simex/R/misclass.R | 32 +-
simex-1.4/simex/R/plot.mcsimex.R |only
simex-1.4/simex/R/plot.simex.R |only
simex-1.4/simex/R/predict.mcsimex.R |only
simex-1.4/simex/R/predict.simex.R |only
simex-1.4/simex/R/print.mcsimex.R |only
simex-1.4/simex/R/print.simex.R |only
simex-1.4/simex/R/print.summary.mcsimex.R |only
simex-1.4/simex/R/print.summary.simex.R |only
simex-1.4/simex/R/refit.R | 124 -----------
simex-1.4/simex/R/refit.mcsimex.R |only
simex-1.4/simex/R/refit.simex.R |only
simex-1.4/simex/R/simex-internal.R |only
simex-1.4/simex/R/simex.R | 293 ++++++++++++++------------
simex-1.4/simex/R/summary.mcsimex.R |only
simex-1.4/simex/R/summary.simex.R |only
simex-1.4/simex/man/build.mc.matrix.Rd | 90 +++++---
simex-1.4/simex/man/diag.block.Rd | 36 ++-
simex-1.4/simex/man/mcsimex.Rd | 218 +++++++++++++-------
simex-1.4/simex/man/misclass.Rd | 48 ++--
simex-1.4/simex/man/simex-package.Rd |only
simex-1.4/simex/man/simex.Rd | 156 ++++++++++----
56 files changed, 985 insertions(+), 770 deletions(-)
Author: Ian Dryden
Title: Statistical shape analysis
Description: Routines for the statistical analysis of shapes. In
particular, the package provides routines for procrustes
analysis, displaying shapes and principal components, testing
for mean shape difference, thin-plate spline transformation
grids and edge superimposition methods.
Diff between shapes versions 1.1-2 dated 2009-04-17 and 1.1-3 dated 2009-05-27
DESCRIPTION | 8 - R/shapes.R | 376 ++++++++++++++++++++++++++++++++++--------------- man/procGPA.Rd | 4 man/riemdist.Rd | 5 man/shapes-internal.Rd | 1 man/testmeanshapes.Rd | 2 6 files changed, 277 insertions(+), 119 deletions(-)
Author: Maja Pohar Perme
Title: Relative survival regression
Description: Various functions for regression in relative survival.
Diff between relsurv versions 1.5 dated 2008-11-13 and 1.5.1 dated 2009-05-27
DESCRIPTION | 21 +++++++++++---------- R/Rcode.r | 4 ++-- R/survfitrsadd.r | 32 ++++++++++++++++---------------- man/invtime.Rd | 6 +++--- man/joinrate.Rd | 9 +++------ man/plotrszph.Rd | 10 ++++------ man/rdata.Rd | 2 +- man/resid.Rd | 10 ++++------ man/rsadd.Rd | 10 ++++------ man/rsbr.Rd | 11 +++++------ man/rsmul.Rd | 19 ++++++------------- man/rssurv.Rd | 7 +++---- man/rstrans.Rd | 17 +++++------------ man/rszph.Rd | 11 +++++------ man/survfitrsadd.rd | 30 ++++++++++++------------------ man/transrate.Rd | 7 ++++--- man/transratehld.Rd | 6 +++--- man/transratehmd.Rd | 6 +++--- 18 files changed, 94 insertions(+), 124 deletions(-)
Author: Torsten Hothorn, Frank Bretz and Peter Westfall with
contributions by Richard M. Heiberger
Title: Simultaneous Inference in General Parametric Models
Description: Simultaneous tests and confidence intervals for general
linear hypotheses in parametric models, including linear,
generalized linear, linear mixed effects, and survival models.
Diff between multcomp versions 1.0-7 dated 2009-02-11 and 1.0-8 dated 2009-05-27
multcomp-1.0-7/multcomp/inst/svn-commit.tmp |only multcomp-1.0-8/multcomp/CHANGES | 8 multcomp-1.0-8/multcomp/DESCRIPTION | 19 multcomp-1.0-8/multcomp/cleanup | 3 multcomp-1.0-8/multcomp/inst/CHANGES | 8 multcomp-1.0-8/multcomp/inst/doc/chfls1.Rnw |only multcomp-1.0-8/multcomp/inst/doc/chfls1.bbl |only multcomp-1.0-8/multcomp/inst/doc/chfls1.bib |only multcomp-1.0-8/multcomp/inst/doc/chfls1.blg |only multcomp-1.0-8/multcomp/inst/doc/chfls1.pdf |only multcomp-1.0-8/multcomp/inst/doc/generalsiminf.pdf | 1096 ++++++++--------- multcomp-1.0-8/multcomp/inst/doc/multcomp-examples.pdf |binary multcomp-1.0-8/multcomp/man/glht.Rd | 2 multcomp-1.0-8/multcomp/man/methods.Rd | 2 multcomp-1.0-8/multcomp/man/trees513.Rd | 2 15 files changed, 581 insertions(+), 559 deletions(-)
Author: Luc Wouters
Diff between mpm versions 1.0-13 dated 2009-04-14 and 1.0-15 dated 2009-05-27
Title: Multivariate Projection Methods
Description: Exploratory graphical analysis of multivariate data,
specifically gene expression data with different projection
methods: principal component analysis, correspondence analysis,
spectral map analysis.
DESCRIPTION | 8 ++++----
R/plot.mpm.R | 30 +++++++++++++++++++++++++-----
inst/NEWS | 6 ++++++
man/plot.mpm.Rd | 6 ++++++
tests/tests.R | 6 ++++++
5 files changed, 47 insertions(+), 9 deletions(-)
Author: Robert B. Gramacy
Diff between monomvn versions 1.7 dated 2009-04-15 and 1.7-1 dated 2009-05-27
Title: Estimation for multivariate normal and Student-t data with
monotone missingness
Description: Estimation of multivariate normal and student-t data of
arbitrary dimension where the pattern of missing data is
monotone. Through the use of parsimonious/shrinkage regressions
(plsr, pcr, lasso, ridge, etc.), where standard regressions
fail, the package can handle a nearly arbitrary amount of
missing data. The current version supports maximum likelihood
inference and a full Bayesian approach employing scale-mixtures
for the lasso (double-exponential) prior and Student-t errors.
Monotone data augmentation extends this Bayesian approach to
arbitrary missingness patterns. A fully functional standalone
interface to the Bayesian lasso (from Park & Casella) and ridge
regression with model selection via Reversible Jump, and
student-t errors (from Geweke) is also provided
.Rbuildindex.20799 |only
ChangeLog | 15 +++
DESCRIPTION | 8 -
R/blasso.R | 65 ++++++++++---
R/blasso.s3.R | 11 +-
R/bmonomvn.R | 11 +-
R/bmonomvn.traces.R | 14 ++
R/randmvn.R | 15 ++-
man/blasso.Rd | 51 +++++++---
man/bmonomvn.Rd | 12 +-
man/monomvn-internal.Rd | 1
man/randmvn.Rd | 6 +
src/blasso.cc | 226 +++++++++++++++++++++++++++++-------------------
src/blasso.h | 29 +++---
src/bmonomvn.cc | 45 +++++----
src/bmonomvn.h | 14 +-
src/hshoe.c |only
src/hshoe.h |only
src/nu.c | 1
19 files changed, 341 insertions(+), 183 deletions(-)
Author: Nicholas J. Lewin-Koh and Roger Bivand, contributions by Edzer
J. Pebesma, Eric Archer, Adrian Baddeley, Hans-Jörg Bibiko,
Stéphane Dray, David Forrest, Patrick Giraudoux, Duncan
Golicher, Virgilio Gómez Rubio, Patrick Hausmann, Thomas
Jagger, Sebastian P. Luque, Don MacQueen, Andrew Niccolai and
Tom Short
Title: Tools for reading and handling spatial objects
Description: Set of tools for manipulating and reading geographic data,
in particular ESRI shapefiles; C code used from shapelib. It
includes binary access to GSHHS shoreline files. The package
also provides interface wrappers for exchanging spatial objects
with packages such as PBSmapping, spatstat, maps, RArcInfo,
Stata tmap, WinBUGS, Mondrian, and others.
Diff between maptools versions 0.7-22 dated 2009-04-14 and 0.7-23 dated 2009-05-27
ChangeLog | 6 ++++++ DESCRIPTION | 8 ++++---- R/sp_spat1.R | 4 ++++ R/spatstat1.R | 40 +++++++++++++++++++++++++++++++++++++++- inst/ChangeLog | 6 ++++++ man/as.ppp.Rd | 20 ++++++++++++++++---- 6 files changed, 75 insertions(+), 9 deletions(-)
Author: Giovanni Petris
Diff between dlm versions 1.0-0 dated 2009-04-15 and 1.0-1 dated 2009-05-27
Title: Bayesian and Likelihood Analysis of Dynamic Linear Models
Description: Maximum likelihood, Kalman filtering and smoothing, and
Bayesian analysis of Normal linear State Space models, also
known as Dynamic Linear Models
CITATION |only
DESCRIPTION | 8 ++++----
R/arms.R | 4 ++--
inst/doc/dlm.pdf |binary
man/rwishart.Rd | 2 +-
5 files changed, 7 insertions(+), 7 deletions(-)
Author: Rasmus E. Benestad
Diff between clim.pact versions 2.2-34 dated 2009-04-17 and 2.2-35 dated 2009-05-27
Title: Climate analysis and empirical-statistical downscaling (ESD)
package for monthly and daily data.
Description: The package contains R functions for retrieving data,
making climate analysis and downscaling of monthly mean and
daily mean global climate scenarios. (Windows-users may need to
obtain the 'ncdf' package from URL
'http://www.stats.ox.ac.uk/pub/RWin/' to get clim.pact to
work). The package is also described in the book
'Empirical-Statistical Downscaling
(http://www.worldscibooks.com/environsci/6908.html)
DESCRIPTION | 8 ++++----
R/ds.R | 2 +-
R/eof.R | 6 +++---
R/getnordklim.R | 2 +-
R/retrieve.nc.R | 24 ++++++++++++------------
5 files changed, 21 insertions(+), 21 deletions(-)
Author: Sundar Dorai-Raj
Diff between binom versions 1.0-4 dated 2008-10-05 and 1.0-5 dated 2009-05-27
Title: Binomial Confidence Intervals For Several Parameterizations
Description: Constructs confidence intervals on the probability of
success in a binomial experiment via several parameterizations
DESCRIPTION | 24 ++++++++++++++----------
man/binom.optim.Rd | 2 --
2 files changed, 14 insertions(+), 12 deletions(-)
Author: Miguel A. R. Manese
Title: Stores data frames & matrices in SQLite tables
Description: Transparently stores data frames & matrices into SQLite
tables.
Diff between SQLiteDF versions 0.1.32 dated 2009-02-17 and 0.1.34 dated 2009-05-27
SQLiteDF-0.1.32/SQLiteDF/src/sqliteInt.h |only SQLiteDF-0.1.34/SQLiteDF/.gitignore |only SQLiteDF-0.1.34/SQLiteDF/ChangeLog | 8 + SQLiteDF-0.1.34/SQLiteDF/DESCRIPTION | 15 +-- SQLiteDF-0.1.34/SQLiteDF/NAMESPACE | 10 -- SQLiteDF-0.1.34/SQLiteDF/R/All.R | 32 +++--- SQLiteDF-0.1.34/SQLiteDF/src/sqlite_dataframe.c | 115 +++++++++++++++++++----- SQLiteDF-0.1.34/SQLiteDF/src/sqlite_dataframe.h | 17 +++ SQLiteDF-0.1.34/SQLiteDF/src/sqlite_vector.c | 39 ++++---- SQLiteDF-0.1.34/SQLiteDF/src/sqlite_workspace.c | 5 - SQLiteDF-0.1.34/SQLiteDF/src/utils.c | 25 +++-- SQLiteDF-0.1.34/SQLiteDF/tests/tests.R | 11 ++ 12 files changed, 197 insertions(+), 80 deletions(-)
Author: Markus Loecher
Diff between ReadImages versions 0.1.1 dated 2009-05-19 and 0.1.2 dated 2009-05-27
Title: Image Reading Module for R
Description: This package provides functions for reading JPEG and PNG
files. This package requires libjpeg
ReadImages-0.1.1/ReadImages/R/.AppleDouble |only
ReadImages-0.1.1/ReadImages/src/jpeglib.h |only
ReadImages-0.1.2/ReadImages/DESCRIPTION | 6 +++---
ReadImages-0.1.2/ReadImages/configure.win |only
ReadImages-0.1.2/ReadImages/man/ReadImages-package.Rd | 2 +-
ReadImages-0.1.2/ReadImages/man/plot.imagematrix.Rd | 3 ++-
ReadImages-0.1.2/ReadImages/man/print.imagematrix.Rd | 3 ++-
ReadImages-0.1.2/ReadImages/src/Makevars.win |only
8 files changed, 8 insertions(+), 6 deletions(-)
Author: Klaus Nordhausen, Seija Sirkia, Hannu Oja, David E. Tyler
Title: Tools for Multivariate Nonparametrics
Description: Tools for multivariate nonparametrics, as location tests
based on marginal ranks, spatial median and spatial signs
computation, Hotelling's T-test, estimates of shape
Diff between ICSNP versions 1.0-3 dated 2009-04-22 and 1.0-4 dated 2009-05-27
DESCRIPTION | 8 ++++---- NAMESPACE | 3 ++- R/HP1.shape.R | 2 ++ R/HR.Mest.R | 4 +++- R/duembgen.shape.R | 2 +- R/duembgen.shape.wt.R |only R/hl.loc.R |only R/ind.ictest.R | 41 ++++++++++++++++++++++++++++------------- R/spatial.sign.R | 1 + R/symm.huber.R |only R/symm.huber.wt.R |only R/tyler.shape.R | 2 ++ R/vdw.loc.R |only inst/CHANGES | 6 ++++++ man/ICSNP-package.Rd | 4 ++-- man/duembgen.shape.Rd | 4 ++-- man/duembgen.shape.wt.Rd |only man/hl.loc.Rd |only man/ind.ictest.Rd | 8 ++++---- man/symm.huber.Rd |only man/symm.huber.wt.Rd |only man/vdw.loc.Rd |only 22 files changed, 57 insertions(+), 28 deletions(-)
Author: Ulrike Groemping
Title: Full factorials, orthogonal arrays and base utilities for DoE
packages
Description: This package creates full factorial experiments and
experiments based on orthogonal arrays for (industrial)
experiments. Additionally, it provides some utility functions
used also by other DoE packages.
Diff between DoE.base versions 0.1 dated 2009-05-25 and 0.2 dated 2009-05-27
DESCRIPTION | 8 ++++---- R/export.design.R | 27 ++++++++++++++++++++++----- R/html.data.frame.R | 3 ++- inst |only man/export.design.Rd | 12 ++++++++++-- man/oa.design.Rd | 4 +--- man/utitlities.Rd | 9 +++++++++ 7 files changed, 48 insertions(+), 15 deletions(-)
Author: Ramon Diaz-Uriarte
Diff between ADaCGH versions 1.3-10 dated 2009-01-11 and 1.3-13 dated 2009-05-27
Title: Analysis of data from aCGH experiments
Description: Analysis and plotting of array CGH data. Allows usage of
Circular Binary Segementation, wavelet-based smoothing (both as
in Liu et al., and HaarSeg as in Ben-Yaacov and Eldar), , ACE
method (CGH Explorer), HMM, BioHMM, GLAD, CGHseg, and Price's
modification of Smith & Waterman's algorith. Most computations
are parallelized. Figures are imagemaps with links to IDClight
(http://idclight.bioinfo.cnio.es).
Changes | 17 +
DESCRIPTION | 34 +-
NAMESPACE | 8
R/ADaCGH.R | 774 ++++++++++++++++++++++++++++++++++++------------
R/HaarSeg.R |only
man/SegmentPlotWrite.Rd | 43 ++
man/mpiInit.Rd | 3
man/pSegment.Rd | 125 ++++++-
man/segmentPlot.Rd | 134 --------
man/tempdir2.Rd |only
src/HaarSeg.h |only
src/r_haarseg.c |only
12 files changed, 792 insertions(+), 346 deletions(-)
Author: Heloise Lavigne and Aurelien Proye and Jean-Pierre Gattuso.
Portions of code and/or corrections were contributed by
Jean-Marie Epitalon, Andreas Hofmann, Bernard Gentili, Jim Orr
and Karline Soetaert
Title: Calculates parameters of the seawater carbonate system
Description: Calculates parameters of the seawater carbonate system
Diff between seacarb versions 2.1 dated 2009-04-22 and 2.1.2 dated 2009-05-25
seacarb-2.1.2/seacarb/ChangeLog | 5 +++++ seacarb-2.1.2/seacarb/DESCRIPTION | 10 ++++++---- seacarb-2.1.2/seacarb/R/amp.R |only seacarb-2.1.2/seacarb/R/pH.R |only seacarb-2.1.2/seacarb/R/pHinsi.R |only seacarb-2.1.2/seacarb/R/pHslope.R |only seacarb-2.1.2/seacarb/R/tris.R |only seacarb-2.1.2/seacarb/man/amp.Rd |only seacarb-2.1.2/seacarb/man/pH.Rd |only seacarb-2.1.2/seacarb/man/pHinsi.Rd |only seacarb-2.1.2/seacarb/man/pHslope.Rd |only seacarb-2.1.2/seacarb/man/tris.Rd |only seacarb-2.1/seacarb/R/phinsi.R |only seacarb-2.1/seacarb/README |only seacarb-2.1/seacarb/man/phinsi.Rd |only 15 files changed, 11 insertions(+), 4 deletions(-)
Author: William Revelle
Diff between psych versions 1.0-67 dated 2009-03-27 and 1.0-70 dated 2009-05-25
Title: Procedures for Psychological, Psychometric, and Personality
Research
Description: A number of routines for personality, psychometrics and
experimental psychology. Functions are primarily for scale
construction using factor analysis, cluster analysis and
reliability analysis, although others provide basic descriptive
statistics. Functions for simulating particular item and test
structures are included. Several functions serve as a useful
front end for structural equation modeling. For more
information, see the personality-project.org/r webpage.
psych-1.0-67/psych/data/neo.Rda |only
psych-1.0-70/psych/CHANGES | 22
psych-1.0-70/psych/DESCRIPTION | 8
psych-1.0-70/psych/NAMESPACE | 8
psych-1.0-70/psych/R/ICLUST.R | 1
psych-1.0-70/psych/R/Promax.R | 8
psych-1.0-70/psych/R/VSS.R | 8
psych-1.0-70/psych/R/cluster.fit.R | 21
psych-1.0-70/psych/R/cor.plot.R |only
psych-1.0-70/psych/R/cosinor.R | 2
psych-1.0-70/psych/R/describe.R | 2
psych-1.0-70/psych/R/error.bars.R | 24
psych-1.0-70/psych/R/error.bars.by.R | 7
psych-1.0-70/psych/R/factor.fit.R | 2
psych-1.0-70/psych/R/factor.minres.R |only
psych-1.0-70/psych/R/factor.pa.1.R |only
psych-1.0-70/psych/R/factor.pa.R | 151
psych-1.0-70/psych/R/factor.stats.R |only
psych-1.0-70/psych/R/guttman.R | 3
psych-1.0-70/psych/R/omega.R | 13
psych-1.0-70/psych/R/pairs.panels.1.R |only
psych-1.0-70/psych/R/panel.cor.scale.R | 4
psych-1.0-70/psych/R/principal.R | 114
psych-1.0-70/psych/R/print.psych.R | 90
psych-1.0-70/psych/R/schmid.R | 26
psych-1.0-70/psych/R/sim.anova.R | 66
psych-1.0-70/psych/R/sim.hierarchical.R | 12
psych-1.0-70/psych/R/sim.item.R | 2
psych-1.0-70/psych/R/sim.structural.R | 14
psych-1.0-70/psych/R/smc.R | 2
psych-1.0-70/psych/R/target.rot.R |only
psych-1.0-70/psych/R/test.psych.r | 6
psych-1.0-70/psych/R/thurstone.R | 48
psych-1.0-70/psych/data/bifactor.rda |binary
psych-1.0-70/psych/data/bifactor.rda.old.rda |only
psych-1.0-70/psych/data/msq.rda |only
psych-1.0-70/psych/data/neo.rda |only
psych-1.0-70/psych/inst/NEWS | 22
psych-1.0-70/psych/inst/doc/all.bib | 362
psych-1.0-70/psych/inst/doc/apa.bst |only
psych-1.0-70/psych/inst/doc/overview.Rnw | 80
psych-1.0-70/psych/inst/doc/overview.pdf |10712 ++---
psych-1.0-70/psych/inst/doc/psych_for_sem.Rnw | 81
psych-1.0-70/psych/inst/doc/psych_for_sem.pdf | 7207 +--
psych-1.0-70/psych/inst/doc/psych_manual.pdf |50598 +++++++++-----------------
psych-1.0-70/psych/man/00.psych-package.Rd | 53
psych-1.0-70/psych/man/Promax.Rd | 35
psych-1.0-70/psych/man/VSS.Rd | 8
psych-1.0-70/psych/man/bifactor.Rd | 13
psych-1.0-70/psych/man/cluster.fit.Rd | 4
psych-1.0-70/psych/man/cor.plot.Rd |only
psych-1.0-70/psych/man/cosinor.Rd | 40
psych-1.0-70/psych/man/error.bars.Rd | 23
psych-1.0-70/psych/man/error.bars.by.Rd | 8
psych-1.0-70/psych/man/factor.pa.Rd | 59
psych-1.0-70/psych/man/factor.stats.Rd |only
psych-1.0-70/psych/man/msq.Rd |only
psych-1.0-70/psych/man/neo.Rd |only
psych-1.0-70/psych/man/omega.Rd | 18
psych-1.0-70/psych/man/principal.Rd | 4
psych-1.0-70/psych/man/r.test.Rd | 2
psych-1.0-70/psych/man/schmid.Rd | 4
psych-1.0-70/psych/man/sim.Rd | 15
psych-1.0-70/psych/man/sim.anova.Rd |only
psych-1.0-70/psych/man/sim.hierarchical.Rd | 5
65 files changed, 28926 insertions(+), 41091 deletions(-)
Author: Moritz Gschwandtner
Title: Multivariate, Interactive Visualization
Description: This package offers different possibilities to visualize
multivariate data
Diff between mvgraph versions 1.0 dated 2009-03-27 and 1.1 dated 2009-05-25
DESCRIPTION | 6 +++--- configure.win |only src/Makevars | 2 +- src/Makevars.win | 4 ++-- src/moc_groupwidget.cpp | 14 ++++++++------ src/moc_icondialog.cpp | 11 ++++++----- src/moc_iconview.cpp | 14 ++++++++------ src/moc_identifywidget.cpp | 14 ++++++++------ src/moc_infowidget.cpp | 14 ++++++++------ src/moc_legendwidget.cpp | 13 +++++++------ src/moc_multiDialog.cpp | 14 ++++++++------ src/moc_rotatewidget.cpp | 14 ++++++++------ src/moc_selectdialog.cpp | 14 ++++++++------ src/moc_spinview.cpp | 14 ++++++++------ src/moc_spinwidget.cpp | 14 ++++++++------ 15 files changed, 91 insertions(+), 71 deletions(-)
Author: Diethelm Wuertz and many others, see the SOURCE file
Title: Financial Time Series Objects
Description: Environment for teaching "Financial Engineering and
Computational Finance"
Diff between fSeries versions 270.76.2 dated 2009-04-16 and 270.76.3 dated 2009-05-25
ChangeLog | 5 +++++ DESCRIPTION | 10 +++++----- R/zzz.R | 10 +++++----- 3 files changed, 15 insertions(+), 10 deletions(-)
Author: Diethelm Wuertz, Yohan Chalabi
Title: Chronological and Calendarical Objects
Description: Environment for teaching "Financial Engineering and
Computational Finance"
Diff between fCalendar versions 270.78.2 dated 2009-04-16 and 270.78.3 dated 2009-05-25
ChangeLog | 5 +++++ DESCRIPTION | 10 +++++----- R/zzz.R | 10 +++++----- 3 files changed, 15 insertions(+), 10 deletions(-)
Author: Douglas Bates
Diff between Matrix versions 0.999375-26 dated 2009-04-29 and 0.999375-27 dated 2009-05-25
Title: Sparse and Dense Matrix Classes and Methods
Description: Classes and methods for dense and sparse matrices and
operations on them using Lapack and SuiteSparse.
ChangeLog | 53 +++
DESCRIPTION | 10
NAMESPACE | 1
R/AllGeneric.R | 2
R/Auxiliaries.R | 5
R/Csparse.R | 64 ---
R/HBMM.R | 10
R/Matrix.R | 78 ----
R/Ops.R | 4
R/Tsparse.R | 33 -
R/dMatrix.R | 23 -
R/ddenseMatrix.R | 13
R/denseMatrix.R | 2
R/dgTMatrix.R | 17 -
R/dgeMatrix.R | 69 ----
R/dsparseMatrix.R | 18 -
R/dtrMatrix.R | 25 -
R/lgCMatrix.R | 15
R/lsparseMatrix.R | 24 -
R/ngCMatrix.R | 26 -
R/nsparseMatrix.R | 23 -
R/products.R |only
R/rankMatrix.R |only
R/sparseMatrix.R | 11
R/sparseVector.R | 32 +
inst/doc/Comparisons.pdf |binary
inst/doc/Design-issues.pdf |binary
inst/doc/Intro2Matrix.pdf | 566 ++++++++++++++++-----------------
inst/doc/Introduction.pdf |binary
inst/doc/sparseModels.pdf |binary
inst/external/wrong.mtx |only
inst/test-tools.R | 13
man/CsparseMatrix-class.Rd | 2
man/TsparseMatrix-class.Rd | 8
man/dgCMatrix-class.Rd | 2
man/rankMatrix.Rd |only
man/sparseVector-class.Rd | 9
po/Matrix.pot | 764 +++++++++++++++++++--------------------------
po/R-Matrix.pot | 523 ++++++++++++++++++++++++++++++
po/R-en@quot.po |only
po/en@quot.po |only
po/update-me.sh |only
src/Makevars | 3
src/Mutils.c | 90 ++---
tests/Simple.R | 5
tests/matprod.R | 33 +
tests/write-read.R | 5
47 files changed, 1352 insertions(+), 1229 deletions(-)
Author: Kenneth Knoblauch and Laurence T. Maloney, based in part on C
code written by Laurence T. Maloney and J. N. Yang
Title: Maximum Likelihood Difference Scaling
Description: Difference scaling is a method for scaling perceived
supra-threshold differences. The package contains functions
that allow the user to design and run a difference scaling
experiment, to fit the resulting data by maximum likelihood and
test the internal validity of the estimated scale.
Diff between MLDS versions 0.1-7 dated 2009-01-17 and 0.1-8 dated 2009-05-25
DESCRIPTION | 23 ++++++++++++----------- R/boot.mlds.R | 14 +++++++++----- R/runSampleExperiment.R | 21 ++++++++++++--------- inst/NEWS | 10 ++++++++++ man/MLDS-package.Rd | 7 +++++-- man/kk.Rd | 4 ++++ man/mlds.Rd | 8 ++++++-- 7 files changed, 58 insertions(+), 29 deletions(-)
Author: Ulrike Groemping
Title: Fractional Factorial designs with 2-level factors
Description: This package creates regular and non-regular Fractional
Factorial designs. Furthermore, analysis tools for Fractional
Factorial designs with 2-level factors are offered (main
effects and interaction plots for all factors simultaneously,
cube plot for looking at the simultaneous effects of three
factors, full or half normal plot, alias structure in a more
readable format than with the built-in function alias). The
package is currently subject to intensive development. While
much of the intended functionality is already available, some
changes and improvements are still to be expected. Suggestions
are welcome.
Diff between FrF2 versions 0.92-5 dated 2009-05-18 and 0.93 dated 2009-05-25
FrF2-0.92-5/FrF2/R/fac.design.R |only FrF2-0.92-5/FrF2/man/class-design.Rd |only FrF2-0.93/FrF2/DESCRIPTION | 11 +++++------ FrF2-0.93/FrF2/NAMESPACE | 5 ++--- FrF2-0.93/FrF2/R/utilperm.R | 10 ---------- FrF2-0.93/FrF2/inst/NEWS | 9 +++++++++ FrF2-0.93/FrF2/man/FrF2-package.Rd | 2 +- FrF2-0.93/FrF2/man/FrF2.Rd | 11 ++++++----- FrF2-0.93/FrF2/man/pb.Rd | 2 +- FrF2-0.93/FrF2/man/utilitiesCat.Rd | 33 ++++++--------------------------- 10 files changed, 30 insertions(+), 53 deletions(-)
Author: Richard M. Heiberger, with contributions from Burt Holland.
Title: Rcmdr support for the HH package
Description: Rcmdr menu support for many of the functions in the HH
package. The focus is on menu items for functions we use in our
introductory courses.
Diff between RcmdrPlugin.HH versions 1.1-21 dated 2009-01-04 and 1.1-24 dated 2009-05-25
DESCRIPTION | 35 +++++++++++++++++++---------------- R/Interaction2wtRcmdr.R | 12 +++++++++++- R/analyzeTwoWayTable.HH.R | 2 +- R/enterTable.HH.R | 2 +- R/normal.and.t.hypotheses.plot.R | 7 ++++--- R/twoWayTable.HH.R | 2 +- inst/etc/menus.txt | 6 +++--- 7 files changed, 40 insertions(+), 26 deletions(-)
More information about RcmdrPlugin.HH at CRAN
Permanent link
Author: Richard M. Heiberger
Title: Statistical Analysis and Data Display: Heiberger and Holland
Description: Support software for Statistical Analysis and Data Display
(Springer, ISBN 0-387-40270-5). This contemporary presentation
of statistical methods features extensive use of graphical
displays for exploring data and for displaying the analysis.
The authors demonstrate how to analyze data---showing code,
graphics, and accompanying computer listings---for all the
methods they cover. They emphasize how to construct and
interpret graphs, discuss principles of graphical design, and
show how accompanying traditional tabular results are used to
confirm the visual impressions derived directly from the
graphs. Many of the graphical formats are novel and appear here
for the first time in print. All chapters have exercises.
Diff between HH versions 2.1-25 dated 2009-03-16 and 2.1-28 dated 2009-05-25
DESCRIPTION | 8 - R/ARIMA-trellis.s | 1 R/glht.mmc.R | 2 R/interaction2wt.R | 6 R/intxplot.s | 20 +- R/norm.curve.R | 305 +++++++++++++++++++++++++------------------- R/panel.interaction2wt.R | 17 +- R/position.R | 17 ++ inst/datasets/lft.asat.dat |only inst/h2 |only man/arma.loop.Rd | 2 man/interaction2wt.Rd | 15 +- man/intxplot.Rd | 5 man/mmc.Rd | 23 +-- man/norm.curve.Rd | 88 ++++++++---- man/panel.interaction2wt.Rd | 9 + man/position.Rd | 2 man/xysplom.Rd | 8 - 18 files changed, 322 insertions(+), 206 deletions(-)
Author: David Meyer and Kurt Hornik (with contributions by Christian
Buchta)
Title: Sets, Generalized Sets, and Customizable Sets.
Description: Data structures and basic operations for ordinary sets,
generalizations such as fuzzy sets, multisets, and fuzzy
multisets, and customizable sets.
Diff between sets versions 0.6 dated 2009-02-10 and 0.7 dated 2009-05-24
DESCRIPTION | 15 NAMESPACE | 11 NEWS | 17 R/complement.R | 110 - R/converters.R | 16 R/cset.R | 7 R/cut.R | 71 R/extractors.R | 85 - R/fuzzyfuns.R | 33 R/gset.R | 108 - R/memberships.R | 4 R/plot.R | 4 R/predicates.R | 40 R/set.R | 2 R/similarity.R | 53 R/sumdiff.R | 10 R/utilities.R | 5 data |only inst/NEWS | 17 inst/doc/sets.pdf |binary man/cset.Rd | 15 man/fuzzydocs.Rd |only man/fuzzyfuns.Rd | 16 man/fuzzyinference.Rd | 3 man/gset.Rd | 46 man/plot.Rd | 7 man/set.Rd | 7 man/similarity.Rd |only paper/JSS-clusterplot.eps | 271 ++- paper/JSS-clusterplot.pdf | 312 ++- paper/JSS-clusterplot2.eps |only paper/JSS-clusterplot2.pdf |only paper/JSS-plot1fig.eps | 2 paper/JSS-plot1fig.pdf | 24 paper/JSS-plot2fig.eps | 2 paper/JSS-plot2fig.pdf | 24 paper/JSS-plot3fig.eps | 2 paper/JSS-plot3fig.pdf | 24 paper/JSS-plot4fig.eps | 2 paper/JSS-plot4fig.pdf | 24 paper/JSS.Rnw | 359 ++-- paper/JSS.aux | 63 paper/JSS.bbl | 40 paper/JSS.blg | 58 paper/JSS.log | 130 - paper/JSS.out | 1 paper/JSS.pdf | 3812 +++++++++++++++++++++++++-------------------- paper/JSS.tex | 464 +++-- paper/Rplots.pdf | 654 +++++-- paper/sets.bib | 36 50 files changed, 4326 insertions(+), 2680 deletions(-)
Author: David Meyer and Christian Buchta
Title: Distance and Similarity Measures
Description: Provides an extensible framework for the effcient
calculation of auto- and cross-proximities, along with
implementations of the most popular ones.
Diff between proxy versions 0.4-2 dated 2009-03-31 and 0.4-3 dated 2009-05-24
DESCRIPTION | 8 ++++---- NEWS | 6 ++++++ R/dist.R | 2 +- inst/NEWS | 6 ++++++ man/dist.Rd | 2 +- src/apply.c | 12 ++++++------ 6 files changed, 24 insertions(+), 12 deletions(-)
Author: Florian Wickelmaier
Diff between eba versions 1.5-2 dated 2008-10-30 and 1.5-3 dated 2009-05-24
Title: Elimination-By-Aspects (EBA) Models
Description: Fitting and testing multi-attribute probabilistic choice
models, especially the Bradley-Terry-Luce (BTL) model (Bradley
& Terry, 1952; Luce, 1959), elimination-by-aspects (EBA) models
(Tversky, 1972), and preference tree (Pretree) models (Tversky
& Sattath, 1979).
ChangeLog | 12 ++++++++
DESCRIPTION | 19 ++++++++------
R/EBA_fast.R | 78 +---------------------------------------------------------
R/eba.order.R | 7 +++--
R/strans.R |only
man/boot.Rd | 2 -
man/strans.Rd | 36 +++++++++++++++++++++++---
7 files changed, 63 insertions(+), 91 deletions(-)
Author: John Maindonald and W. John Braun
Title: Data Analysis And Graphics
Description: various data sets used in examples and exercises in the
book Maindonald, J.H. and Braun, W.J. (2003, 2007) "Data
Analysis and Graphics Using R".
Diff between DAAG versions 0.99-1 dated 2009-05-14 and 0.99-2 dated 2009-05-24
DAAG-0.99-1/DAAG/man/cv.binary.Rd |only DAAG-0.99-2/DAAG/CVbinary.R |only DAAG-0.99-2/DAAG/DESCRIPTION | 8 +- DAAG-0.99-2/DAAG/INDEX | 5 + DAAG-0.99-2/DAAG/R/CVbinary.R | 85 ++++++++++++++--------------- DAAG-0.99-2/DAAG/R/cv.binary.R | 85 ++++++++++++++--------------- DAAG-0.99-2/DAAG/data/cps1.RData |only DAAG-0.99-2/DAAG/data/cps2.RData |only DAAG-0.99-2/DAAG/data/cps3.RData |only DAAG-0.99-2/DAAG/inst/misc/viewtemps.RData |binary DAAG-0.99-2/DAAG/man/CVbinary.Rd | 28 ++++++--- DAAG-0.99-2/DAAG/man/cps1.Rd |only DAAG-0.99-2/DAAG/man/cps2.Rd |only DAAG-0.99-2/DAAG/man/cps3.Rd |only DAAG-0.99-2/DAAG/man/frogs.Rd | 22 ------- 15 files changed, 110 insertions(+), 123 deletions(-)
Author: Hugh Chipman
Diff between BayesTree versions 0.2-0 dated 2006-10-17 and 0.3-1 dated 2009-05-24
Title: Bayesian Methods for Tree Based Models
Description: Implementation of BART:Bayesian Additive Regression Trees,
Chipman, George, McCulloch (2009)
DESCRIPTION | 21 ++++++++-----
NAMESPACE | 2 -
R/bart.R | 79 ++++++++++++++++++++++++++++++++++++++++++++------
R/makeind.R |only
R/pd2bart.R | 6 +++
R/pdbart.R | 6 +++
R/plot.bart.R | 39 +++++++++++++++++-------
man/bart.Rd | 79 +++++++++++++++++++++++++++++++++-----------------
man/makeind.Rd |only
man/pdbart.Rd | 2 +
src/mbart.cpp | 89 +++++++++++++++++++++++++++++++++++++++++++--------------
11 files changed, 246 insertions(+), 77 deletions(-)
Author: Julian Taylor
Diff between wgaim versions 0.2 dated 2008-11-27 and 0.2-2 dated 2009-05-24
Title: Whole Genome Average Interval Mapping for QTL detection using
mixed models
Description: This package integrates sophisticated mixed modelling
methods with a whole genome approach to detecting significant
QTL's in linkage maps.
DESCRIPTION | 32 ++++++++++++++++++++------------
R/wgaim.R | 25 ++++++++++++++++++++++---
2 files changed, 42 insertions(+), 15 deletions(-)
Author: Terry M Therneau and Beth Atkinson
Diff between rpart versions 3.1-43 dated 2009-03-10 and 3.1-44 dated 2009-05-24
Title: Recursive Partitioning
Description: Recursive partitioning and regression trees
ChangeLog | 2 +
DESCRIPTION | 15 ++++----
R/rpart.exp.s | 2 -
R/rpart.poisson.s | 61 ++++++++++++++++-----------------
inst/po/de |only
inst/po/en@quot/LC_MESSAGES/R-rpart.mo |binary
inst/po/en@quot/LC_MESSAGES/rpart.mo |binary
inst/po/fr/LC_MESSAGES/R-rpart.mo |binary
inst/po/ru/LC_MESSAGES/R-rpart.mo |binary
po/R-de.po |only
po/R-en@quot.po | 14 +++----
po/R-fr.po | 6 +--
po/R-rpart.pot | 8 ++--
po/R-ru.po | 19 ++++++----
po/de.po |only
po/en@quot.po | 6 +--
16 files changed, 71 insertions(+), 62 deletions(-)
Author: Luke J. Keele
Title: Perform Rosenbaum bounds sensitivity tests for matched data.
Description: Takes matched data and calculates Rosenbaum bounds for the
treatment effect. Calculates bounds for binary data,
Hodges-Lehmann point estimates, Wilcoxon signed-rank test, and
for data with multiple matched controls. Is designed to work
with the Matching package and operate on Match() objects.
Diff between rbounds versions 0.2 dated 2009-01-28 and 0.3 dated 2009-05-24
DESCRIPTION | 18 ++++++++++-------- R/binarysens.R | 5 ++--- R/hlsens.R | 4 ++-- R/onAttach.R |only R/psens.R | 8 ++++---- man/binarysens.Rd | 4 ++-- man/hlsens.Rd | 4 ++-- man/mcontrol.Rd | 4 ++-- man/psens.Rd | 4 ++-- 9 files changed, 26 insertions(+), 25 deletions(-)
Author: Jim Lemon,Ben Bolker,Sander Oom, Eduardo Klein,Barry
Rowlingson, Hadley Wickham,Anupam Tyagi, Olivier
Eterradossi,Gabor Grothendieck, Michael Toews,John Kane,Mike
Cheetham, Rolf Turner,Carl Witthoft,Julian Stander, Thomas
Petzoldt,Remko Duursma,Elisa Biancotto, Ofir Levy
Title: Various plotting functions
Description: Lots of plots, various labeling, axis and color scaling
functions.
Diff between plotrix versions 2.5-5 dated 2009-05-04 and 2.6 dated 2009-05-24
DESCRIPTION | 8 ++++---- R/brkdn.plot.R | 6 ++++-- R/bumpchart.R | 10 +++++++--- R/color2D.matplot.R | 2 +- R/dispersion.R | 7 ++++++- R/gap.barplot.R | 10 +++++----- R/hierobarp.R | 7 ++++--- R/radial.plot.R | 5 +++-- man/bumpchart.Rd | 10 +++++++++- man/dispersion.Rd | 11 ++++++++--- man/qt.plot.Rd | 8 ++++---- man/radial.plot.Rd | 4 ++++ man/spreadout.Rd | 3 +++ man/thigmophobe.labels.Rd | 11 ++++++----- 14 files changed, 68 insertions(+), 34 deletions(-)
Author: Felix Andrews
Diff between playwith versions 0.9-43 dated 2008-11-16 and 0.9-44 dated 2009-05-24
Title: A GUI for interactive plots using GTK+
Description: A GTK+ graphical user interface for editing and
interacting with R plots.
DESCRIPTION | 33 ++--
NAMESPACE | 4
R/apiIdentify.R | 8
R/gridwork.R | 32 +++
R/parameterControlTool.R | 31 +++
R/playwith.R | 116 +++++---------
R/settings.R | 4
R/uiClickActions.R | 2
R/uiGlobalActions.R | 5
R/uiGrobActions.R | 49 +----
R/uiIdentifyActions.R | 2
R/uiManager.R | 12 +
demo/clusterApp.R | 124 ++++++++-------
demo/lineEqTool.R | 3
demo/pointsTool.R | 2
inst/NEWS | 18 ++
inst/etc/ui.toolbars.xml | 1
man/identifyGrob.Rd |only
man/panel.usertext.Rd | 10 -
man/parameterControlTool.Rd | 5
man/playwith.API.Rd | 362 ++++++++++++++++++++++----------------------
man/playwith.Rd | 90 +++++++---
src |only
23 files changed, 512 insertions(+), 401 deletions(-)
Author: Steven Kembel
Diff between picante versions 0.6-1 dated 2009-03-19 and 0.7-0 dated 2009-05-24
Title: R tools for integrating phylogenies and ecology
Description: Phylocom integration, community analyses, null-models,
traits and evolution in R
picante-0.6-1/picante/man/mnnd.Rd |only
picante-0.6-1/picante/man/ses.mnnd.Rd |only
picante-0.7-0/picante/DESCRIPTION | 10 -
picante-0.7-0/picante/R/phylobeta.R |only
picante-0.7-0/picante/R/phylodiversity.R | 237 ++++++++++++++++-----------
picante-0.7-0/picante/R/pic3.R |only
picante-0.7-0/picante/R/species.dist.R | 6
picante-0.7-0/picante/R/traitgram.R |only
picante-0.7-0/picante/man/comdist.Rd |only
picante-0.7-0/picante/man/comdistnt.Rd |only
picante-0.7-0/picante/man/comm.phylo.cor.Rd | 2
picante-0.7-0/picante/man/comm.phylo.qr.Rd |only
picante-0.7-0/picante/man/mntd.Rd |only
picante-0.7-0/picante/man/mpd.Rd | 9 -
picante-0.7-0/picante/man/pd.Rd | 6
picante-0.7-0/picante/man/pic3.Rd |only
picante-0.7-0/picante/man/picante-package.Rd | 6
picante-0.7-0/picante/man/ses.mntd.Rd |only
picante-0.7-0/picante/man/ses.mpd.Rd | 6
picante-0.7-0/picante/man/traitgram.Rd |only
20 files changed, 175 insertions(+), 107 deletions(-)
Author: Author: Christophe Genolini (and some helpfull readers...)
Title: Toy Pack Classic
Description: This package comes to illustrate the book "Petit Manuel de
Programmation Orientee Objet sous R"
Diff between packClassic versions 0.5 dated 2008-09-19 and 0.5.1 dated 2009-05-24
packClassic-0.5.1/packClassic/DESCRIPTION | 29 +++++----- packClassic-0.5.1/packClassic/NAMESPACE | 2 packClassic-0.5.1/packClassic/R/progClassic.R | 19 +++--- packClassic-0.5.1/packClassic/data/dataAges.rda |binary packClassic-0.5.1/packClassic/man/dataAges.Rd | 16 ++++- packClassic-0.5.1/packClassic/man/packClassic-package.Rd | 40 +++++++------- packClassic-0.5.1/packClassic/man/publicAC.Rd | 20 ++++--- packClassic-0.5.1/packClassic/testsDev/testsProgClassic.R | 25 ++++---- packClassic-0.5/packClassic/DESCRIPTION_EX |only packClassic-0.5/packClassic/Read-and-delete-me |only packClassic-0.5/packClassic/divers |only packClassic-0.5/packClassic/main.R |only packClassic-0.5/packClassic/tests |only 13 files changed, 85 insertions(+), 66 deletions(-)
Author: Jose Pinheiro
Diff between nlme versions 3.1-91 dated 2009-05-04 and 3.1-92 dated 2009-05-24
Title: Linear and Nonlinear Mixed Effects Models
Description: Fit and compare Gaussian linear and nonlinear
mixed-effects models.
nlme-3.1-91/nlme/po/R-de.po |only
nlme-3.1-92/nlme/DESCRIPTION | 8
nlme-3.1-92/nlme/INDEX | 186 ++++++++---------
nlme-3.1-92/nlme/inst/po/de |only
nlme-3.1-92/nlme/inst/po/en@quot/LC_MESSAGES/R-nlme.mo |binary
nlme-3.1-92/nlme/inst/po/en@quot/LC_MESSAGES/nlme.mo |binary
nlme-3.1-92/nlme/po/R-en@quot.po | 6
nlme-3.1-92/nlme/po/de.po |only
nlme-3.1-92/nlme/po/en@quot.po | 6
9 files changed, 103 insertions(+), 103 deletions(-)
Author: Alan Genz, Frank Bretz, Tetsuhisa Miwa, Xuefei Mi, Friedrich
Leisch, Fabian Scheipl, Torsten Hothorn
Title: Multivariate Normal and t Distributions
Description: Computes multivariate normal and t probabilities,
quantiles, random deviates and densities.
Diff between mvtnorm versions 0.9-5 dated 2009-03-17 and 0.9-7 dated 2009-05-24
CHANGES | 10 +++++++++- DESCRIPTION | 8 ++++---- R/mvt.R | 6 +++--- inst/CHANGES | 10 +++++++++- inst/doc/MVT_Rnews.pdf |binary src/mvt.f | 6 +++++- 6 files changed, 30 insertions(+), 10 deletions(-)
Author: Paul PONCET
Diff between modeest versions 1.06 dated 2007-03-30 and 1.09 dated 2009-05-24
Title: Mode Estimation
Description: This package provides estimators of the mode of univariate
unimodal data or univariate unimodal distributions. It also
enables to compute the Chernoff distribution.
modeest-1.06/modeest/R/chernoff.R |only
modeest-1.06/modeest/R/dip.R |only
modeest-1.06/modeest/man/Chernoff.Rd |only
modeest-1.06/modeest/man/dip.Rd |only
modeest-1.06/modeest/src/airy.c |only
modeest-1.06/modeest/src/airy.h |only
modeest-1.06/modeest/src/dip.c |only
modeest-1.06/modeest/src/gamma.c |only
modeest-1.06/modeest/src/gamma.h |only
modeest-1.06/modeest/src/integral.c |only
modeest-1.06/modeest/src/integral.h |only
modeest-1.06/modeest/src/integral1.c |only
modeest-1.06/modeest/src/integral2.c |only
modeest-1.06/modeest/src/loggamma.c |only
modeest-1.06/modeest/src/main.c |only
modeest-1.06/modeest/src/main.h |only
modeest-1.06/modeest/src/recipgam.c |only
modeest-1.06/modeest/src/zeroinder.c |only
modeest-1.09/modeest/CHANGES |only
modeest-1.09/modeest/DESCRIPTION | 29 ++++---
modeest-1.09/modeest/INDEX | 17 ++--
modeest-1.09/modeest/NAMESPACE | 2
modeest-1.09/modeest/R/as.numeric.mlv.R |only
modeest-1.09/modeest/R/asselin.R |only
modeest-1.09/modeest/R/distribMode.R | 35 ++++++--
modeest-1.09/modeest/R/mlv.R | 64 ++++++++--------
modeest-1.09/modeest/R/parzen.R | 10 +-
modeest-1.09/modeest/R/tsybakov.R | 11 +-
modeest-1.09/modeest/R/venter.R | 2
modeest-1.09/modeest/doc |only
modeest-1.09/modeest/man/Lientz.Rd | 48 ++++++------
modeest-1.09/modeest/man/asselin.Rd |only
modeest-1.09/modeest/man/discrete.Rd | 8 +-
modeest-1.09/modeest/man/distribMode.Rd | 74 +++++++++---------
modeest-1.09/modeest/man/grenander.Rd | 23 +++--
modeest-1.09/modeest/man/hrm.Rd | 10 +-
modeest-1.09/modeest/man/hsm.Rd | 20 ++---
modeest-1.09/modeest/man/mlv.Rd | 106 +++++++++++++++++----------
modeest-1.09/modeest/man/modeest-package.Rd | 42 +++++-----
modeest-1.09/modeest/man/naive.Rd | 10 +-
modeest-1.09/modeest/man/parzen.Rd | 26 +++---
modeest-1.09/modeest/man/skewness.Rd | 24 +++---
modeest-1.09/modeest/man/tsybakov.Rd | 28 +++----
modeest-1.09/modeest/man/venter.Rd | 30 ++++---
modeest-1.09/modeest/src/half_range_mode.cpp | 4 -
45 files changed, 356 insertions(+), 267 deletions(-)
Author: Daniela M Witten and Robert Tibshirani
Title: Lassoed principal components for testing significance of
features
Description: Implements the LPC method of Witten&Tibshirani(2008) for
identification of significant genes in a microarray experiment.
Diff between lpc versions 1.0 dated 2008-06-11 and 1.0.1 dated 2009-05-24
DESCRIPTION | 12 ++++++--- R/CheckEstimateLPCFDRFormat.R | 5 +++ R/CheckEstimateTFDRFormat.R | 5 +++ R/CheckLPCFormat.R | 5 +++ R/CheckPredictiveAdvantageFormat.R | 5 +++ R/CreateTrainTestSet.R | 12 +++++++-- R/EstimateLPCFDR.R | 8 +++++- R/EstimateTFDR.R | 3 ++ R/GetSoftThresh.R | 3 ++ R/LPC.R | 1 R/PredictiveAdvantage.R | 1 R/PredictiveModel.R | 4 ++- R/multiclass.R |only man/EstimateLPCFDR.Rd | 7 +++-- man/EstimateTFDR.Rd | 14 +++++++--- man/LPC.Rd | 48 ++++++++++++++++++++++++++++++++++--- man/PlotFDRs.Rd | 3 +- man/PredictiveAdvantage.Rd | 15 ++++++----- man/PrintGeneList.Rd | 11 ++++---- 19 files changed, 127 insertions(+), 35 deletions(-)
Author: Douglas Bates
Diff between lme4 versions 0.999375-30 dated 2009-05-12 and 0.999375-31 dated 2009-05-24
Title: Linear mixed-effects models using S4 classes
Description: Fit linear and generalized linear mixed-effects models.
ChangeLog | 8 ++++++++
DESCRIPTION | 10 +++++-----
R/lmer.R | 1 +
3 files changed, 14 insertions(+), 5 deletions(-)
Author: Wolfgang Breymann, David Luethi
Title: A package on the generalized hyperbolic distribution and its
special cases
Description: This package provides detailed functionality for working
with the univariate and multivariate Generalized Hyperbolic
distribution and its special cases (Hyperbolic (hyp), Normal
Inverse Gaussian (NIG), Variance Gamma (VG), skewed Student-t
and Gaussian distribution). Especially, it contains fitting
procedures, an AIC-based model selection routine, and functions
for the computation of density, quantile, probability, random
variates, expected shortfall and some portfolio optimization
and plotting routines as well as the likelihood ratio test. In
addition, it contains the Generalized Inverse Gaussian
distribution.
Diff between ghyp versions 1.5.0 dated 2008-11-27 and 1.5.1 dated 2009-05-24
ChangeLog | 7 DESCRIPTION | 27 Fixme | 7 R/ghypConstructors.R | 24 R/ghypFitting.R | 8 R/ghypGIG.R | 9 R/ghypGenericMethods.R | 111 R/ghypInternals.R | 47 R/ghypMethods.R | 115 R/ghypWrappers.R | 12 inst/doc/Generalized_Hyperbolic_Distribution.Rnw | 431 inst/doc/Generalized_Hyperbolic_Distribution.pdf |58269 +++++++++++------------ inst/doc/ghypCommands.sty | 21 inst/doc/ludabib.bib | 974 man/ghyp-constructors.Rd | 124 man/ghyp-package.Rd | 6 man/ghyp.moment.Rd | 19 17 files changed, 30966 insertions(+), 29245 deletions(-)
Author: Mark Stevenson
Diff between epiR versions 0.9-15 dated 2009-03-31 and 0.9-16 dated 2009-05-24
Title: Functions for analysing epidemiological data
Description: A package for analysing epidemiological data. Contains
functions for directly and indirectly adjusting measures of
disease frequency, quantifying measures of association on the
basis of single or multiple strata of count data presented in a
contingency table, and computing confidence intervals around
incidence risk and incidence rate estimates. Miscellaneous
functions for use in meta-analysis, diagnostic test
interpretation, and sample size calculations.
DESCRIPTION | 8
R/epi.conf.R | 24
R/epi.prev.R | 30
R/epi.simplesize.R | 3
doc/epiR.pdf | 2383 +++++++++++++++++++++++++-------------------------
man/epi.2by2.Rd | 6
man/epi.conf.Rd | 6
man/epi.prev.Rd | 6
man/epi.simplesize.Rd | 16
man/epi.tests.Rd | 2
10 files changed, 1269 insertions(+), 1215 deletions(-)
Author: Tim Keitt
Title: Builds color tables
Description: Builds gradient color maps
Diff between colorRamps versions 2.2 dated 2008-07-05 and 2.3 dated 2009-05-24
DESCRIPTION | 8 +++++--- R/colorRamps.R | 8 ++++---- man/blue2red.Rd | 1 + man/blue2yellow.Rd | 1 + man/colorRamps-package.Rd | 1 + man/matlab.like.Rd | 1 + man/primary.colors.Rd | 1 + man/ramps.Rd | 1 + man/rgb.tables.Rd | 10 ++++++---- 9 files changed, 21 insertions(+), 11 deletions(-)
Author: Max Kuhn. Contributions from Jed Wing, Steve Weston, Andre
Williams and Chris Keefer
Title: Classification and Regression Training
Description: Misc functions for training and plotting classification
and regression models
Diff between caret versions 4.15 dated 2009-05-13 and 4.16 dated 2009-05-24
DESCRIPTION | 8 NAMESPACE | 3 R/createGrid.R | 4 R/createModel.R | 36 +- R/filterVarImp.R | 116 +++--- R/misc.R | 23 - R/predictionFunction.R | 5 R/predictors.R | 14 R/probFunction.R | 10 R/selection.R | 6 inst/CHANGES | 11 inst/doc/caretMisc.pdf | 769 ++++++++++++++++++++++---------------------- inst/doc/caretSelection.pdf | 639 ++++++++++++++++++------------------ inst/doc/caretTrain.pdf |binary inst/doc/caretVarImp.pdf |binary 15 files changed, 864 insertions(+), 780 deletions(-)
Author: Hugo Andres Gutierrez Rojas
Diff between TeachingSampling versions 0.7.6 dated 2009-03-14 and 0.8.1 dated 2009-05-24
More information about TeachingSampling at CRAN
Title: Sampling designs and parameter estimation in finite population
Description: Foundations of inference in survey sampling
DESCRIPTION | 6 +++---
R/S.SY.r | 22 ++++++++++++----------
man/S.SY.rd | 8 ++++----
3 files changed, 19 insertions(+), 17 deletions(-)
Permanent link
Author: Rich FitzJohn & Ian Dickie
Title: TRFLP Analysis and Matching Package for R
Description: TRAMPR is an R package for matching terminal restriction
fragment length polymorphism (TRFLP) profiles between unknown
samples and a database of knowns. TRAMPR facilitates analysis
of many unknown profiles at once, and provides tools for
working directly with electrophoresis output through to
generating summaries suitable for community analyses with R's
rich set of statistical functions. TRAMPR also resolves the
issues of multiple TRFLP profiles within a species, and shared
TRFLP profiles across species.
Diff between TRAMPR versions 1.0-4 dated 2007-06-05 and 1.0-5 dated 2009-05-24
TRAMPR-1.0-4/TRAMPR/inst/doc/TRAMPRdemo-012.eps |only TRAMPR-1.0-4/TRAMPR/inst/doc/TRAMPRdemo-012.pdf |only TRAMPR-1.0-4/TRAMPR/inst/doc/TRAMPRdemo-015.eps |only TRAMPR-1.0-4/TRAMPR/inst/doc/TRAMPRdemo-015.pdf |only TRAMPR-1.0-4/TRAMPR/inst/doc/TRAMPRdemo.tex |only TRAMPR-1.0-5/TRAMPR/DESCRIPTION | 36 ++++++++++++------------ TRAMPR-1.0-5/TRAMPR/R/TRAMPknowns.R | 7 +++- TRAMPR-1.0-5/TRAMPR/R/TRAMPsamples.R | 5 +++ TRAMPR-1.0-5/TRAMPR/inst/doc/TRAMPRdemo.pdf |binary TRAMPR-1.0-5/TRAMPR/man/TRAMPindexing.Rd | 4 ++ TRAMPR-1.0-5/TRAMPR/man/TRAMPknowns.Rd | 2 - 11 files changed, 33 insertions(+), 21 deletions(-)
Author: Ann Lee, Diana Luca, Bert Klei, Bernie Devlin, Kathryn Roeder
Title: Discovering Genetic Ancestry Using Spectral Graph Theory
Description: Discovering Genetic Ancestry Using Spectral Graph Theory
Diff between SpectralGEM versions 0.1 dated 2009-03-15 and 0.2 dated 2009-05-24
DESCRIPTION | 8 ++++---- R/Spectral-GEM.R | 18 +++++++++++------- src/RcallOlinux.c | 2 +- src/Rcallexe.c | 2 +- 4 files changed, 17 insertions(+), 13 deletions(-)
Author: Stig Bousgaard Mortensen
Diff between PSM versions 0.8-4 dated 2009-02-25 and 0.8-5 dated 2009-05-24
Title: Non-Linear Mixed-Effects modelling using Stochastic Differential
Equations.
Description: This package provides functions for estimation of linear
and non-linear mixed-effects models using stochastic
differential equations. Moreover it provides functions for
finding smoothed estimates of model states and for simulation.
The package allows for any multivariate non-linear time-variant
model to be specified, and it also handels multidimentional
input, co-variates, missing observations and specification of
dosage regimen.
DESCRIPTION | 26 ++++++++++++++++++--------
R/ModelCheck.R | 6 +++++-
R/PSM.simulate.R | 2 +-
examples/Case_Bioreactor.R | 15 +++++++++++++++
examples/Non-Linear-Deconvolution.R |only
examples/PSM.R |only
examples/PSM2.R |only
examples/PSMvsCTSM-figure1.eps |only
examples/PSMvsCTSM-figure1.pdf |only
examples/PSMvsCTSM-figure2.eps |only
examples/PSMvsCTSM-figure2.pdf |only
examples/PSMvsCTSM.tex |only
examples/RhelpPDF |only
examples/Rplots.ps |only
examples/Rprof1.out |only
examples/derivcheck.R |only
examples/example-isr.R | 10 ++++++++--
examples/example-supersimple.R | 3 ++-
examples/isrsim.png |only
examples/plot-test.R |only
examples/simdose.RData |only
examples/simisr.RData |only
examples/tmp.R |only
inst/doc/PSM.R |only
inst/doc/PSM.dvi |only
inst/doc/PSM.pdf |binary
inst/doc/simdoseold.RData |only
inst/doc/simdoseold2.RData |only
28 files changed, 49 insertions(+), 13 deletions(-)
Author: Lopaka Lee
Title: Nondetects And Data Analysis for environmental data
Description: Contains methods described by Dennis R. Helsel in his book
"Nondetects And Data Analysis: Statistics for Censored
Environmental Data"
Diff between NADA versions 1.5-1 dated 2007-09-27 and 1.5-2 dated 2009-05-24
DESCRIPTION | 14 ++++++++------ NAMESPACE | 3 ++- R/km.R | 6 ------ R/reg.R | 7 +------ R/ros.R | 11 +++++++---- man/Cen.Rd | 2 +- man/NADAList-class.Rd | 2 +- man/cenboxplot.Rd | 2 +- man/cendiff.Rd | 2 +- man/cenfit-class.Rd | 2 +- man/cenfit.Rd | 2 +- man/cenken-class.Rd | 4 ++-- man/cenmle-class.Rd | 2 +- man/cenmle-gaussian-class.Rd | 2 +- man/cenmle-lognormal-class.Rd | 2 +- man/cenmle.Rd | 2 +- man/cenreg-class.Rd | 4 ++-- man/cenreg-gaussian-class.Rd | 2 +- man/cenreg-lognormal-class.Rd | 2 +- man/cenreg.Rd | 2 +- man/censtats.Rd | 2 +- man/censummary.Rd | 2 +- man/cenxyplot.Rd | 2 +- man/cor-methods.Rd | 1 + man/hc.ppoints.Rd | 2 +- man/pctCen.Rd | 2 +- man/ros-class.Rd | 2 +- man/ros.Rd | 2 +- man/splitQual.Rd | 2 +- man/summary.cenreg-class.Rd | 2 +- 30 files changed, 45 insertions(+), 49 deletions(-)
Author: S original by Matt Wand. R port by Brian Ripley
Diff between KernSmooth versions 2.23-1 dated 2009-05-05 and 2.23-2 dated 2009-05-24
Title: Functions for kernel smoothing for Wand & Jones (1995)
Description: functions for kernel smoothing (and density estimation)
corresponding to the book: Wand, M.P. and Jones, M.C. (1995)
"Kernel Smoothing".
DESCRIPTION | 8 ++++----
R/all.R | 2 +-
inst/po/de |only
inst/po/en@quot/LC_MESSAGES/R-KernSmooth.mo |binary
po/R-KernSmooth.pot | 6 +++---
po/R-de.po |only
po/R-en@quot.po | 14 +++++++-------
7 files changed, 15 insertions(+), 15 deletions(-)
Author: Markus Loecher, Sense Networks
Diff between HTMLUtils versions 0.1 dated 2009-05-20 and 0.1.1 dated 2009-05-24
Title: Facilitates automated HTML report creation
Description: Facilitates automated HTML report creation, in particular
framed HTML pages and dynamically sortable tables.
DESCRIPTION | 6 +++---
R/myHTMLInitFile.R | 6 ++++--
man/BasicHTML.Rd | 10 +++++++---
man/FramedHTML.Rd | 10 +++++++---
man/HTMLUtils-package.Rd | 2 +-
5 files changed, 22 insertions(+), 12 deletions(-)
Author: Achim Zeileis, Gabor Grothendieck
Title: Z's ordered observations
Description: An S3 class with methods for totally ordered indexed
observations. It is particularly aimed at irregular time series
of numeric vectors/matrices and factors. zoo's key design goals
are independence of a particular index/date/time class and
consistency with with ts and base R by providing methods to
extend standard generics.
Diff between zoo versions 1.5-5 dated 2009-02-05 and 1.5-6 dated 2009-05-21
DESCRIPTION | 21 NEWS | 6 R/MATCH.R | 2 R/ORDER.R | 2 R/as.zoo.R | 4 R/merge.zoo.R | 2 inst/doc/plot-axes.pdf |only inst/doc/plot-axes.tex |only inst/doc/zoo-faq.Rnw | 15 inst/doc/zoo-faq.pdf | 581 +++++----- inst/doc/zoo-quickref.pdf | 296 ++--- inst/doc/zoo.Rnw | 22 inst/doc/zoo.pdf | 2572 +++++++++++++++++++++++----------------------- 13 files changed, 1776 insertions(+), 1747 deletions(-)
Author: Christian Kleiber, Achim Zeileis
Title: Applied Econometrics with R
Description: Functions, data sets, examples, demos, and vignettes for
the book Christian Kleiber and Achim Zeileis (2008), Applied
Econometrics with R, Springer-Verlag, New York. ISBN
978-0-387-77316-2. (See the vignette for a package overview.)
Diff between AER versions 1.1-2 dated 2009-03-19 and 1.1-3 dated 2009-05-21
COPYRIGHTS | 2 - DESCRIPTION | 8 ++--- NEWS | 13 +++++++++ R/tobit.R | 14 +++++----- data/PSID7682.rda |only inst/doc/AER.Rnw | 7 ++++- inst/doc/AER.pdf |binary inst/doc/Sweave-journals.pdf | 60 +++++++++++++++++++++---------------------- man/PSID1982.Rd | 10 ++++++- man/PSID7682.Rd |only 10 files changed, 71 insertions(+), 43 deletions(-)
Author: Dongjun Chung
Diff between spls versions 1.0-3 dated 2009-01-26 and 1.1-0 dated 2009-05-20
Title: Sparse Partial Least Squares (SPLS) Regression and
Classification
Description: This package provides functions for fitting a Sparse
Partial Least Squares Regression and Classification
DESCRIPTION | 27 ++++++----
R/ci.spls.R | 6 +-
R/coefplot.spls.R | 4 -
R/cv.spls.R | 12 ++--
R/predict.spls.R | 4 -
R/spls.R | 14 +++--
R/spls.dv.R | 14 +----
inst/doc/Rplots.pdf |only
inst/doc/spls-example.Rnw | 115 ++++++++++++++++++++++------------------------
inst/doc/spls-example.pdf |binary
man/cv.spls.Rd | 3 -
man/spls-internal.Rd | 2
12 files changed, 102 insertions(+), 99 deletions(-)
Author: Nagiza F. Samatova
Diff between taskPR versions 0.31 dated 2008-03-13 and 0.34 dated 2009-05-20
Title: Task-Parallel R Package
Description: The Task-Parallel R ("task-pR") system, repackaged as an R
package
taskPR-0.31/taskPR/..Rcheck |only
taskPR-0.34/taskPR/DESCRIPTION | 17 +++++++++++------
taskPR-0.34/taskPR/README | 5 +++++
taskPR-0.34/taskPR/man/PE.Rd | 2 +-
taskPR-0.34/taskPR/src/Makevars | 3 ++-
taskPR-0.34/taskPR/src/Makevars.in | 1 +
taskPR-0.34/taskPR/src/extra.c | 29 +++++++++++------------------
taskPR-0.34/taskPR/src/hashtable.c | 6 +++---
taskPR-0.34/taskPR/src/mpspawn.c | 9 ++++-----
taskPR-0.34/taskPR/src/peval.c | 16 ++++++++++------
taskPR-0.34/taskPR/src/scheduler.c | 2 +-
taskPR-0.34/taskPR/src/scheduler.h | 6 +++---
taskPR-0.34/taskPR/src/worker.c | 28 ++++++++++++++++++----------
13 files changed, 70 insertions(+), 54 deletions(-)
Author: Michael A. Lawrence
Title: Easy analysis and visualization of factorial experiments.
Description: This package facilitates easy analysis of factorial
experiments, including purely within-Ss designs (a.k.a.
"repeated measures"), purely between-Ss designs, and mixed
within-and-between-Ss designs. The functions in this package
provide easy access to descriptive statistics, ANOVA,
permutation tests, and visualization of results.
Diff between ez versions 1.2 dated 2009-05-18 and 1.3 dated 2009-05-20
ez-1.2/ez/R/relev.R |only ez-1.2/ez/man/relev.Rd |only ez-1.3/ez/CHANGES |only ez-1.3/ez/DESCRIPTION | 8 ++++---- ez-1.3/ez/NAMESPACE | 2 +- ez-1.3/ez/R/ez-internal.R | 10 +--------- ez-1.3/ez/R/ezANOVA.R | 10 +++++++++- ez-1.3/ez/R/ezLev.R |only ez-1.3/ez/man/ez-package.Rd | 8 ++++---- ez-1.3/ez/man/ezANOVA.Rd | 17 ++++------------- ez-1.3/ez/man/ezLev.Rd |only 11 files changed, 23 insertions(+), 32 deletions(-)
Author: Markus Loecher, Sense Networks
Title: Overlays on Google map tiles in R
Description: This package serves two purposes: (i) Provide a
comfortable R interface to query the Google server for static
maps, and (ii) Use the map as a background image to overlay
plots within R. This requires proper coordinate scaling.
Diff between RgoogleMaps versions 1.1.1 dated 2009-05-15 and 1.1.2 dated 2009-05-20
RgoogleMaps-1.1.1/RgoogleMaps/inst/doc/RgoogleMaps-intro.tex |only RgoogleMaps-1.1.2/RgoogleMaps/DESCRIPTION | 6 +++--- RgoogleMaps-1.1.2/RgoogleMaps/R/GetMap.R | 2 +- RgoogleMaps-1.1.2/RgoogleMaps/inst/doc/RgoogleMaps-intro.pdf |binary RgoogleMaps-1.1.2/RgoogleMaps/man/RgoogleMaps-package.Rd | 2 +- 5 files changed, 5 insertions(+), 5 deletions(-)
Author: Holger Schwender, Arno Fritsch
Title: Analysis of High-Dimensional Categorical Data such as SNP Data
Description: Tools for the analysis of high-dimensional data
developed/implemented at the group "Statistical Complexity
Reduction In Molecular Epidemiology" (SCRIME). Main focus is on
SNP data. But most of the functions can also be applied to
other types of categorical data.
Diff between scrime versions 1.1.4 dated 2009-05-11 and 1.1.6 dated 2009-05-19
DESCRIPTION | 8 ++++---- R/simulateSNPs.R | 39 ++++++++++++++++++++++++++++++--------- inst/CHANGES | 14 ++++++++++++++ man/simulateSNPs.Rd | 24 ++++++++++++++++++------ 4 files changed, 66 insertions(+), 19 deletions(-)
Author: Ben B. Hansen
Diff between optmatch versions 0.4-1 dated 2008-07-05 and 0.5-0 dated 2009-05-19
Title: Functions for optimal matching
Description: Functions for optimal matching, including full matching
ChangeLog | 8 +++
DESCRIPTION | 21 ++++----
R/fullmatch.R | 2
R/matched.distances.R | 3 +
R/pscore.dist.R | 12 +++-
R/stratumStructure.R | 46 +++++++++++++++---
R/summary.optmatch.R | 44 ++++++++++++++++-
ToDo | 2
inst/doc/optmatch.pdf |binary
man/fullmatch.Rd | 2
man/makedist.Rd | 2
man/pscore.dist.Rd | 16 ++++--
man/stratumStructure.Rd | 12 +++-
tests/moremethods.optmatch-tests.Rout.save | 32 ++++++++++++-
tests/pscore-dist.R | 6 +-
tests/pscore-dist.Rout.save | 17 ++++--
tests/stratumStructure-tests.R | 13 ++++-
tests/stratumStructure-tests.Rout.save | 71 ++++++++++++++++++++---------
tests/summary.optmatch-tests.R |only
tests/summary.optmatch-tests.Rout.save |only
20 files changed, 240 insertions(+), 69 deletions(-)
Author: Chris Fraley, Adrian E. Raftery, J. McLean Sloughter, Tilmann
Gneiting, University of Washington With contributions from
Bobby Yuen and Michael Polokowski
Title: Probabilistic Forecasting using Ensembles and Bayesian Model
Averaging
Description: Bayesian Model Averaging to create probabilistic forecasts
from ensemble forecasts and weather observations.
Diff between ensembleBMA versions 4.2.1 dated 2009-05-10 and 4.2.2 dated 2009-05-19
CHANGELOG | 3 ++- DESCRIPTION | 8 ++++---- R/crps.ensembleBMAgamma.R | 3 ++- R/crps.ensembleBMAgamma0.R | 3 ++- R/crps.ensembleBMAnormal.R | 3 ++- 5 files changed, 12 insertions(+), 8 deletions(-)
Author: Michele De Meo
Title: Bethel's algorithm.
Description: The sample size according to the Bethel's procedure.
Diff between bethel versions 0.1 dated 2009-03-27 and 0.2 dated 2009-05-19
bethel-0.1/bethel/doc |only bethel-0.2/bethel/DESCRIPTION | 8 ++++---- bethel-0.2/bethel/inst |only bethel-0.2/bethel/man/bth.Rd | 2 +- 4 files changed, 5 insertions(+), 5 deletions(-)
Author: David Kraus
Title: Tests of the Proportional Hazards Assumption
Description: Tests of the proportional hazards assumption in the Cox
model: data-driven Neyman type smooth tests and score process
based tests for identifying nonproportional covariates and for
global checks.
Diff between proptest versions 0.1-3 dated 2008-02-28 and 0.1-4 dated 2009-05-19
DESCRIPTION | 16 +++++++++------- R/mini.coxph.detail.R | 8 +++++--- R/mini.survfit.coxph.R | 5 +++-- 3 files changed, 17 insertions(+), 12 deletions(-)
Author: Gaston Sanchez
Diff between plspm versions 0.1-2 dated 2009-05-10 and 0.1-3 dated 2009-05-19
Title: Partial Least Squares data analysis methods
Description: Partial Least Squares (PLS) methods with emphasis on
structural equation models with latent variables.
DESCRIPTION | 8 -
R/plot.plsca.R | 3
R/plot.plspm.groups.R | 3
R/pls.efects.R |only
R/pls.loads.R |only
R/pls.paths.R |only
R/pls.weights.R |only
R/plspm.R | 236 +++-----------------------------------------------
R/plspm.groups.R | 157 ---------------------------------
R/plsr1.R |only
man/plspm-internal.Rd |only
man/plspm-package.Rd | 4
man/plspm.Rd | 6 -
13 files changed, 29 insertions(+), 388 deletions(-)
Author: Antoine Lucas
Title: Another Multidimensional Analysis Package
Description: Tools for Clustering and Principal Component Analysis
(With robusts methods, and parallelized functions).
Diff between amap versions 0.8-2 dated 2007-10-03 and 0.8-3 dated 2009-05-19
DESCRIPTION | 17 +++-- R/burt.R | 2 R/dist.R | 2 inst/doc/amap.pdf |binary inst/doc/amap_sdd.tex |only inst/doc/amap_srs.tex |only man/dist.Rd | 4 + man/hcluster.Rd | 6 +- src/Makevars.in | 2 src/burt.c | 10 ++- src/distance_T.cpp | 146 +++++++++++++++++++++++++++++++++++--------------- src/distance_T.h | 16 +++++ src/hclust.cpp | 29 --------- src/hclust.h | 18 +++++- src/hclust_T.cpp | 2 src/hclust_T.h | 13 ++++ 16 files changed, 178 insertions(+), 89 deletions(-)
Author: Michael A Rotondi
Diff between epibasix versions 0.1 dated 2007-10-16 and 1.1 dated 2009-05-18
Title: Elementary Epidemiological Functions for a Graduate
Epidemiology\Biostatistics Course
Description: This package contains elementary tools for analysis of
common epidemiological problems, ranging from sample size
estimation, through 2x2 contingency table analysis and basic
measures of agreement (kappa, sensitivity/specificity).
Appropriate print and summary statements are also written to
facilitate interpretation wherever possible. This package is a
work in progress, so any comments or suggestions would be
appreciated. Source code is commented throughout to facilitate
modification. The target audience includes graduate students
in various epi/biostatistics courses.
DESCRIPTION | 32 ++++++++++++++++++++++----------
R/epi2x2.R | 4 ++--
R/epiKappa.R | 12 ++++++------
R/epiTTest.R | 4 +---
R/sensSpec.R | 10 ++++------
R/univar.R | 2 +-
6 files changed, 36 insertions(+), 28 deletions(-)
Author: Michael Lawrence
Diff between RGtk2 versions 2.12.10 dated 2009-03-26 and 2.12.11 dated 2009-05-18
Title: R bindings for Gtk 2.8.0 and above
Description: Facilities in the R language for programming graphical
interfaces using Gtk, the Gimp Tool Kit.
DESCRIPTION | 10 ++--
R/gobject.R | 16 +++---
R/gtkManuals.R | 13 ++---
man/GObject.Rd | 6 +-
man/RGtkObject.Rd | 3 -
man/gtkSelectionDataSet.Rd | 3 -
src/libgladeManuals.c | 106 +++++++++++++++++++++++++--------------------
7 files changed, 89 insertions(+), 68 deletions(-)
Author: Thomas Lumley
Title: analysis of complex survey samples
Description: Summary statistics, generalised linear models, Cox models,
loglinear models, and general maximum pseudolikelihood
estimation for multistage stratified, cluster-sampled,
unequally weighted survey samples. Variances by Taylor series
linearisation or replicate weights. Post-stratification,
calibration, and raking. Two-phase designs. Graphics.
Predictive margins by direct standardization.
Diff between survey versions 3.14 dated 2009-04-15 and 3.15 dated 2009-05-18
DESCRIPTION | 10 +- NAMESPACE | 23 +++++- R/ftable.svystat.R | 5 + R/ht.R | 88 +++--------------------- R/margins.R | 169 +++++++++++++++++++++++++++++++++++++++++++++-- R/survey.R | 14 ++- R/surveyrep.R | 4 + R/svykm.R | 13 ++- R/twophase.R | 9 +- R/twophase2.R |only inst/CITATION | 4 - inst/NEWS | 23 ++++++ inst/doc/domain.pdf |binary inst/doc/epi.pdf |binary inst/doc/phase1.pdf |binary inst/doc/sparse.pdf |only inst/doc/survey.pdf |binary man/marginpred.Rd |only man/twophase.Rd | 61 ++++++++++------ tests/domain.R | 65 ++++++++++++++++++ tests/domain.Rout.save | 124 +++++++++++++++++++++++++++++++++- tests/twophase.R | 39 ++++++++-- tests/twophase.Rout.save | 133 +++++++++++++++++++++++++++--------- 23 files changed, 614 insertions(+), 170 deletions(-)
More information about odfWeave.survey at CRAN
Permanent link
Author: Ulrike Groemping
Title: Fractional Factorial designs with 2-level factors
Description: This package creates regular and non-regular Fractional
Factorial designs. Furthermore, analysis tools for Fractional
Factorial designs with 2-level factors are offered (main
effects and interaction plots for all factors simultaneously,
cube plot for looking at the simultaneous effects of three
factors, full or half normal plot, alias structure in a more
readable format than with the built-in function alias). The
package is currently subject to intensive development. While
much of the intended functionality is already available, some
changes and improvements are still to be expected. Suggestions
are welcome.
Diff between FrF2 versions 0.92-4 dated 2009-05-15 and 0.92-5 dated 2009-05-18
DESCRIPTION | 8 ++++---- R/estimable2fis.R | 5 +++-- R/fac.design.R | 2 +- inst/NEWS | 13 +++++++++++++ man/CatalogueAccessors.Rd | 17 ++++++++--------- man/FrF2.Rd | 11 +++++++++++ 6 files changed, 40 insertions(+), 16 deletions(-)
Author: Frank E Harrell Jr
Diff between Design versions 2.1-2 dated 2008-11-04 and 2.2-0 dated 2009-05-18
Title: Design Package
Description: Regression modeling, testing, estimation, validation,
graphics, prediction, and typesetting by storing enhanced model
design attributes in the fit. Design is a collection of about
180 functions that assist and streamline modeling, especially
for biostatistical and epidemiologic applications. It also
contains new functions for binary and ordinal logistic
regression models and the Buckley-James multiple regression
model for right-censored responses, and implements penalized
maximum likelihood estimation for logistic and ordinary linear
models. Design works with almost any regression model, but it
was especially written to work with logistic regression, Cox
regression, accelerated failure time models, ordinary linear
models, the Buckley-James model, and generalized least squares
for serially or spatially correlated observations.
Design-2.1-2/Design/R/summary.survfit.s |only
Design-2.1-2/Design/R/survfit.s |only
Design-2.1-2/Design/inst/CHANGELOG |only
Design-2.1-2/Design/man/Overview.Rd |only
Design-2.1-2/Design/man/summary.survfit.Rd |only
Design-2.1-2/Design/man/survfit.Rd |only
Design-2.1-2/Design/src/old_src |only
Design-2.2-0/Design/DESCRIPTION | 40 -
Design-2.2-0/Design/INDEX | 127 ++-
Design-2.2-0/Design/R/Design.Misc.s | 75 +-
Design-2.2-0/Design/R/Design.s | 538 ++++++++--------
Design-2.2-0/Design/R/Design.trans.s | 78 +-
Design-2.2-0/Design/R/Surv.s | 4
Design-2.2-0/Design/R/anova.Design.s | 812 ++++++++++++-------------
Design-2.2-0/Design/R/bj.s | 2
Design-2.2-0/Design/R/calibrate.default.s | 4
Design-2.2-0/Design/R/calibrate.s | 41 -
Design-2.2-0/Design/R/cph.s | 671 ++++++++++----------
Design-2.2-0/Design/R/groupkm.s | 6
Design-2.2-0/Design/R/lrm.s | 5
Design-2.2-0/Design/R/nomogram.Design.s | 241 +++++--
Design-2.2-0/Design/R/ols.s | 5
Design-2.2-0/Design/R/plot.Design.s | 573 ++++++++---------
Design-2.2-0/Design/R/predab.resample.s | 43 -
Design-2.2-0/Design/R/psm.s | 2
Design-2.2-0/Design/R/residuals.cph.s | 6
Design-2.2-0/Design/R/survest.cph.s | 2
Design-2.2-0/Design/R/survfit.cph.null.s | 320 ++++-----
Design-2.2-0/Design/R/survfit.cph.s | 202 +++---
Design-2.2-0/Design/R/survfit.formula.s |only
Design-2.2-0/Design/R/survplot.survfit.s | 483 +++++++++-----
Design-2.2-0/Design/R/val.prob.s | 3
Design-2.2-0/Design/R/validate.cph.s | 189 ++---
Design-2.2-0/Design/R/validate.psm.s | 3
Design-2.2-0/Design/inst/copyright |only
Design-2.2-0/Design/man/Design-internal.Rd | 1
Design-2.2-0/Design/man/Design.trans.Rd | 6
Design-2.2-0/Design/man/bj.Rd | 340 +++++-----
Design-2.2-0/Design/man/calibrate.Rd | 14
Design-2.2-0/Design/man/cph.Rd | 522 ++++++++--------
Design-2.2-0/Design/man/lrm.fit.Rd | 4
Design-2.2-0/Design/man/nomogram.Rd | 733 +++++++++++-----------
Design-2.2-0/Design/man/plot.Design.Rd | 21
Design-2.2-0/Design/man/plot.xmean.ordinaly.Rd | 119 +--
Design-2.2-0/Design/man/psm.Rd | 294 ++++-----
Design-2.2-0/Design/man/survfit.cph.Rd | 9
Design-2.2-0/Design/man/survfit.formula.Rd |only
Design-2.2-0/Design/man/survplot.Rd | 34 -
Design-2.2-0/Design/man/val.prob.Rd | 4
Design-2.2-0/Design/man/zzzDesignOverview.Rd |only
Design-2.2-0/Design/src/agexact.c |only
Design-2.2-0/Design/src/agfit3.c |only
Design-2.2-0/Design/src/agfit5.c |only
Design-2.2-0/Design/src/agmart.c |only
Design-2.2-0/Design/src/agmart2.c |only
Design-2.2-0/Design/src/agscore.c |only
Design-2.2-0/Design/src/agsurv1.c |only
Design-2.2-0/Design/src/agsurv2.c |only
Design-2.2-0/Design/src/agsurv3.c |only
Design-2.2-0/Design/src/chinv2.c |only
Design-2.2-0/Design/src/chinv3.c |only
Design-2.2-0/Design/src/cholesky2.c |only
Design-2.2-0/Design/src/cholesky3.c |only
Design-2.2-0/Design/src/chsolve2.c |only
Design-2.2-0/Design/src/chsolve3.c |only
Design-2.2-0/Design/src/cox_Rcallback.c |only
Design-2.2-0/Design/src/coxdetail.c |only
Design-2.2-0/Design/src/coxfit2.c |only
Design-2.2-0/Design/src/coxfit5.c |only
Design-2.2-0/Design/src/coxmart.c |only
Design-2.2-0/Design/src/coxph_wtest.c |only
Design-2.2-0/Design/src/coxscho.c |only
Design-2.2-0/Design/src/coxscore.c |only
Design-2.2-0/Design/src/dmatrix.c |only
Design-2.2-0/Design/src/doloop.c |only
Design-2.2-0/Design/src/lrmfit.f | 23
Design-2.2-0/Design/src/mlmats.f | 66 +-
Design-2.2-0/Design/src/pyears1.c |only
Design-2.2-0/Design/src/pyears2.c |only
Design-2.2-0/Design/src/pyears3.c |only
Design-2.2-0/Design/src/pystep.c |only
Design-2.2-0/Design/src/robcovf.f | 4
Design-2.2-0/Design/src/survConcordance.c |only
Design-2.2-0/Design/src/survS.h |only
Design-2.2-0/Design/src/survdiff2.c |only
Design-2.2-0/Design/src/survfit4.c |only
Design-2.2-0/Design/src/survpenal.c |only
Design-2.2-0/Design/src/survproto.h |only
Design-2.2-0/Design/src/survreg6.c |only
Design-2.2-0/Design/src/survreg7.c |only
Design-2.2-0/Design/src/survregc1.c |only
Design-2.2-0/Design/src/survregc2.c |only
92 files changed, 3560 insertions(+), 3109 deletions(-)
Author: Michael A. Lawrence
Title: Easy analysis and visualization of factorial experiments.
Description: This package facilitates easy analysis of factorial
experiments, including purely within-Ss designs (a.k.a.
"repeated measures"), purely between-Ss designs, and mixed
within-and-between-Ss designs. The functions in this package
provide easy access to descriptive statistics, ANOVA,
permutation tests, and visualization of results.
Diff between ez versions 1.1 dated 2009-04-27 and 1.2 dated 2009-05-18
DESCRIPTION | 11 +-- NAMESPACE | 2 R/ez-internal.R | 182 +++++++++++++++++++++++++++++++++++++++++++++++------- R/ezPlot.R | 19 ++--- R/ezStats.R | 78 ----------------------- R/relev.R |only man/ez-package.Rd | 11 +-- man/ezANOVA.Rd | 9 +- man/ezPlot.Rd | 12 +-- man/ezStats.Rd | 5 - man/relev.Rd |only 11 files changed, 192 insertions(+), 137 deletions(-)
Author: Duncan Temple Lang
Title: HTTP request interface
Description: The package allows one to compose general HTTP requests
and provides convenient functions to fetch URIs, get & post
forms, etc. and process the results returned by the Web server.
This provides a great deal of control over the HTTP/FTP/...
connection and the form of the request while providing a
higher-level interface than is available just using R socket
connections. Additionally, the underlying implementation is
robust and extensive, supporting FTP/FTPS/TFTP (uploads and
downloads), SSL/HTTPS, telnet, dict, ldap, and also supports
cookies, redirects, authentication, etc.
Diff between RCurl versions 0.94-1 dated 2009-02-07 and 0.95-1 dated 2009-05-18
Changes.html | 29 ++ CodeGeneration/enum.c.t00.tu |only CodeGeneration/generate.R | 2 DESCRIPTION | 42 ++-- FAQ.html | 80 +++++++- NAMESPACE | 3 R/dynamic.R |only R/form.S | 51 +++-- R/getURLContent.R | 61 +++++- R/header.R | 10 - inst/doc/philosophy.html | 421 +++++++++++++++++++++---------------------- inst/doc/philosophy.pdf |only inst/doc/philosophy.xml | 29 +- inst/enums/Renums.c | 51 ++++- man/base64.Rd | 20 +- man/basicTextGatherer.Rd | 3 man/dynCurlReader.Rd |only man/getURL.Rd | 8 man/postForm.Rd | 24 +- src/Rcurl.h | 4 src/curl.c | 4 tests/dynSetReader.R |only tickets.tcp |only 23 files changed, 531 insertions(+), 311 deletions(-)
Author: Piotr Romanski
Title: Selecting attributes
Description: This package provides functions for selecting attributes
from a given dataset. Attribute subset selection is the process
of identifying and removing as much of the irrevelant and
redundant information as possible.
Diff between FSelector versions 0.15 dated 2009-05-06 and 0.17 dated 2009-05-18
DESCRIPTION | 8 ++++---- R/discretize.R | 3 --- R/misc.R | 2 +- R/search.hill.climbing.R | 1 - R/selector.random.forest.R | 3 +-- R/selector.relief.R | 20 ++++++++++++++++---- man/FSelector-package.Rd | 2 +- 7 files changed, 23 insertions(+), 16 deletions(-)
Author: Wouter Buytaert
Title: Implementation of the hydrological model TOPMODEL in R
Description: An R implementation of the hydrological model TOPMODEL,
based on the 1995 FORTRAN version by Keith Beven. This version
is adapted from the C translation by Huidae Cho in implemented
in GRASS GIS.
Diff between topmodel versions 0.6.1 dated 2009-01-12 and 0.6.2 dated 2009-05-17
DESCRIPTION | 17 +++++++++++------ R/topidx.R | 11 +++++++---- man/NSeff.Rd | 4 ++-- man/huagrahuma.dem.Rd | 3 +-- man/infiltration.Rd | 2 +- man/make.classes.Rd | 2 +- man/topidx.Rd | 2 +- man/topmodel.Rd | 7 ++++--- 8 files changed, 28 insertions(+), 20 deletions(-)
Author: D.J.J. Walvoort, D.J. Brus, and J.J. de Gruijter
Title: Spatial Coverage Sampling
Description: Spatial coverage sampling and random sampling from compact
geographical strata created by k-means.
Diff between spcosa versions 0.1-2 dated 2009-03-23 and 0.1-3 dated 2009-05-17
DESCRIPTION | 11 R/method_getCellSize-CompactStratification.R | 4 R/method_getCellSize-SpatialPixels.R |only R/method_plot-CompactStratification.R | 6 inst/CITATION | 22 inst/doc/spcosa.pdf |188413 ++++++++++++++------------- tests/unitTesting.html | 16 7 files changed, 98166 insertions(+), 90306 deletions(-)
Author: Jan de Leeuw, Patrick Mair
Title: smacof for Multidimensional Scaling.
Description: This package provides the following approaches of
multidimensional scaling (MDS) based on stress minimization by
means of majorization (smacof): Simple smacof on symmetric
dissimilarity matrices, smacof for rectangular matrices
(unfolding models), smacof with constraints on the
configuration, three-way smacof for individual differences
(including constraints for idioscal, indscal, and identity),
and spherical smacof (primal and dual algorithm). Each of these
approaches is implemented in a metric and nonmetric manner
including primary, secondary, and tertiary approaches for tie
handling.
Diff between smacof versions 0.9-5 dated 2009-03-10 and 0.9-6 dated 2009-05-17
DESCRIPTION | 36 R/plot.smacof.R | 16 R/plot.smacofID.r | 16 R/plot.smacofR.R | 16 R/plot3d.smacof.r | 5 R/plot3d.smacofID.r | 2 R/plot3d.smacofR.r | 2 inst/doc/Rplots.pdf | 2353 ++++++++++++++++++++++++-------------------------- inst/doc/smacof.Rnw | 38 inst/doc/smacof.pdf | 2338 +++++++++++++++++++++++++------------------------ man/plot3d.smacof.rd | 8 man/smacof-package.Rd | 4 12 files changed, 2428 insertions(+), 2406 deletions(-)
Author: Ulrike Groemping, with contributions from Matthias Lehrkamp
Title: Relative importance of regressors in linear models
Description: relaimpo provides several metrics for assessing relative
importance in linear models. These can be printed, plotted and
bootstrapped. The recommended metric is lmg, which provides a
decomposition of the model explained variance into non-negative
contributions. There is a version of this package available
that additionally provides a new and also recommended metric
called pmvd. If you are a non-US user, you can download this
extended version from Ulrike Groempings web site.
Diff between relaimpo versions 2.1-1 dated 2009-05-15 and 2.1-2 dated 2009-05-17
DESCRIPTION | 8 ++++---- inst/CITATION | 9 +++++---- inst/NEWS | 4 ++++ man/mianalyze.relimp.Rd | 2 +- 4 files changed, 14 insertions(+), 9 deletions(-)
Author: Aaron A. King, Edward L. Ionides, Carles Martinez Breto, Steve
Ellner, Bruce Kendall
Title: Statistical inference for partially observed Markov processes
Description: Inference methods for partially-observed Markov processes
Diff between pomp versions 0.23-6 dated 2009-05-10 and 0.24-1 dated 2009-05-15
DESCRIPTION | 10 +++++----- R/simulate-pomp.R | 3 +++ data/euler.sir.rda |binary data/ou2.rda |binary data/rw2.rda |binary inst/ChangeLog | 19 +++++++++++++++++++ inst/doc/Rplots.pdf | 22 +++++++++++----------- inst/doc/compiled_code_in_pomp.Rnw | 2 +- inst/doc/compiled_code_in_pomp.pdf |binary inst/doc/intro_to_pomp.Rnw | 2 +- inst/doc/intro_to_pomp.pdf |binary inst/examples/logistic.R | 2 +- inst/include/pomp.h | 2 ++ man/nlf.Rd | 2 +- man/pfilter.Rd | 2 +- man/simulate-pomp.Rd | 2 ++ src/euler.c | 6 +++--- src/pomp.h | 2 ++ tests/logistic.R | 2 +- tests/logistic.Rout.save | 6 +++--- tests/ou2-nlf.R | 2 +- tests/ou2-nlf.Rout.save | 17 +++++++++-------- tests/ou2-simulate.R | 2 +- tests/ou2-simulate.Rout.save | 10 ++++++---- 24 files changed, 73 insertions(+), 42 deletions(-)
Author: Edzer J. Pebesma
Diff between gstat versions 0.9-59 dated 2009-02-04 and 0.9-60 dated 2009-05-15
Title: geostatistical modelling, prediction and simulation
Description: variogram modelling; simple, ordinary and universal point
or block (co)kriging, sequential Gaussian or indicator
(co)simulation; variogram and variogram map plotting utility
functions.
DESCRIPTION | 15
R/gstat.cv.R | 6
R/krige.R | 2
R/print.variogramModel.R | 2
demo/snow.R | 4
inst/doc/gstat.pdf |34666 +++++++++++++++++++++++-----------------------
man/fit.variogram.reml.Rd | 2
man/get.contr.Rd | 2
man/krige.Rd | 13
man/krige.cv.Rd | 11
man/variogram.Rd | 2
11 files changed, 17889 insertions(+), 16836 deletions(-)
Author: Ulrike Groemping
Title: Fractional Factorial designs with 2-level factors
Description: This package creates regular and non-regular Fractional
Factorial designs. Furthermore, analysis tools for Fractional
Factorial designs with 2-level factors are offered (main
effects and interaction plots for all factors simultaneously,
cube plot for looking at the simultaneous effects of three
factors, full or half normal plot, alias structure in a more
readable format than with the built-in function alias). The
package is currently subject to intensive development. While
much of the intended functionality is already available, some
changes and improvements are still to be expected. Suggestions
are welcome.
Diff between FrF2 versions 0.92-2 dated 2009-05-07 and 0.92-4 dated 2009-05-15
DESCRIPTION | 8 R/FrF2.R | 44 - R/fac.design.R | 12 R/pb.R | 2 inst/NEWS | 9 tests/FrF2test.Rout.save | 1576 +++++++++++++++++++++++------------------------ 6 files changed, 819 insertions(+), 832 deletions(-)
Author: Ulrike Groemping, with contributions from Matthias Lehrkamp
Title: Relative importance of regressors in linear models
Description: relaimpo provides several metrics for assessing relative
importance in linear models. These can be printed, plotted and
bootstrapped. The recommended metric is lmg, which provides a
decomposition of the model explained variance into non-negative
contributions. There is a version of this package available
that additionally provides a new and also recommended metric
called pmvd. If you are a non-US user, you can download this
extended version from Ulrike Groempings web site.
Diff between relaimpo versions 2.1 dated 2008-08-12 and 2.1-1 dated 2009-05-15
relaimpo-2.1-1/relaimpo/DESCRIPTION | 36 ++++++++++------- relaimpo-2.1-1/relaimpo/inst/NEWS |only relaimpo-2.1-1/relaimpo/man/booteval.relimp.Rd | 4 - relaimpo-2.1-1/relaimpo/man/calc.relimp.Rd | 2 relaimpo-2.1-1/relaimpo/man/classesmethods.relaimpo.Rd | 4 - relaimpo-2.1-1/relaimpo/man/mianalyze.relimp.Rd | 30 +++++++------- relaimpo-2.1-1/relaimpo/man/relaimpo-package.Rd | 2 relaimpo-2.1-1/relaimpo/man/relimplm-class.Rd | 2 relaimpo-2.1-1/relaimpo/man/relimplmboot-class.Rd | 2 relaimpo-2.1-1/relaimpo/man/relimplmbootMI-class.Rd | 2 relaimpo-2.1-1/relaimpo/man/relimplmbooteval-class.Rd | 2 relaimpo-2.1/relaimpo/inst/doc |only 12 files changed, 48 insertions(+), 38 deletions(-)
Author: Jonathan P. Weeks
Diff between plink versions 1.0.0 dated 2009-04-19 and 1.1-0 dated 2009-05-15
Title: IRT Separate Calibration Linking Methods
Description: This package uses item response theory methods to compute
linking constants and conduct chain linking of unidimensional
or multidimensional tests for multiple groups under a
nonequivalent groups common item design. The unidimensional
methods include the Mean/Mean, Mean/Sigma, Haebara, and
Stocking-Lord methods for dichotomous (1PL, 2PL and 3PL) and/or
polytomous (graded response, partial credit/generalized partial
credit, nominal, and multiple-choice model) items. The
multidimensional methods include the Reckase-Martineau method
and extensions of the Haebara and Stocking-Lord method using a
single dilation parameter, multiple dilation parameters, or the
Oshima, Davey, & Lee approach for multidimensional extensions
of all the unidimensional dichotomous and polytomous item
response models. The package also includes functions for
importing item and/or ability parameters from common IRT
software and ploting item characteristic/category curves or
surfaces and vector plots.
DESCRIPTION | 10
NAMESPACE | 6
R/plink.R | 73 ++++---
R/read.bilog.R | 481 +++++++++++++++++++++++++++++++++++++++++++-----
inst/CITATION | 4
inst/NEWS | 10
man/as.irt.pars.Rd | 45 ++--
man/as.poly.mod.Rd | 6
man/as.weight.Rd | 35 +--
man/combine.pars.Rd | 24 +-
man/drm-methods.Rd | 11 -
man/gpcm-methods.Rd | 20 +
man/grm-methods.Rd | 6
man/irt.pars-class.Rd | 12 -
man/irt.prob-class.Rd | 11 -
man/link-class.Rd | 2
man/link.con.Rd | 4
man/list.poly-class.Rd | 10
man/mcm-methods.Rd | 33 ++-
man/md.mixed.Rd | 4
man/mixed-methods.Rd | 13 -
man/nrm-methods.Rd | 10
man/plink-methods.Rd | 55 ++---
man/plink-package.Rd | 4
man/plot.irt.prob.Rd | 16 -
man/poly.mod-class.Rd | 5
man/read.bilog.Rd | 142 ++++++++++++--
man/sep.pars-class.Rd | 7
man/sep.pars-methods.Rd | 31 +--
man/summary.irt.pars.Rd | 14 -
30 files changed, 843 insertions(+), 261 deletions(-)
Author: Simon Wood
Diff between mgcv versions 1.5-4 dated 2009-05-04 and 1.5-5 dated 2009-05-15
Title: GAMs with GCV/AIC/REML smoothness estimation and GAMMs by PQL
Description: Routines for GAMs and other generalized ridge regression
with multiple smoothing parameter selection by GCV, REML or
UBRE/AIC. Also GAMMs by REML or PQL. Includes a gam() function.
DESCRIPTION | 6 +++---
NAMESPACE | 1 +
R/gamm.r | 11 +++++++----
changeLog | 10 ++++++++++
4 files changed, 21 insertions(+), 7 deletions(-)
Author: Deepayan Sarkar
Diff between lattice versions 0.17-22 dated 2009-04-04 and 0.17-25 dated 2009-05-15
Title: Lattice Graphics
Description: Implementation of Trellis Graphics. See ?Lattice for a
brief introduction
DESCRIPTION | 8 +++----
NEWS | 7 ++++++
R/levelplot.R | 25 +++++++-----------------
inst |only
man/level.colors.Rd | 34 +++++++++++++++++++++++++-------
man/levelplot.Rd | 18 ++++++++++++-----
man/panel.levelplot.Rd | 51 +++++++++++++++++++++++--------------------------
po/R-de.po |only
po/R-en@quot.po |only
po/R-fr.po | 17 +++++++++++++++-
po/R-lattice.pot | 17 +++++++++++++++-
11 files changed, 115 insertions(+), 62 deletions(-)
Author: Vincent Goulet, Sébastien Auclair, Christophe Dutang, Xavier
Milhaud, Tommy Ouellet, Louis-Philippe Pouliot, Mathieu Pigeon
Title: Actuarial functions
Description: Additional actuarial science functionality, mostly in the
fields of loss distributions, risk theory (including ruin
theory), simulation of compound hierarchical models and
credibility theory, for the moment.
Diff between actuar versions 1.0-1 dated 2009-01-29 and 1.0-2 dated 2009-05-15
actuar-1.0-1/actuar/inst/doc/Rplots.pdf |only actuar-1.0-2/actuar/DESCRIPTION | 17 actuar-1.0-2/actuar/R/bstraub.R | 8 actuar-1.0-2/actuar/inst/NEWS | 20 actuar-1.0-2/actuar/inst/doc/Makefile | 7 actuar-1.0-2/actuar/inst/doc/actuar.pdf |binary actuar-1.0-2/actuar/inst/doc/coverage.pdf |binary actuar-1.0-2/actuar/inst/doc/credibility.pdf |binary actuar-1.0-2/actuar/inst/doc/lossdist.pdf | 2804 - actuar-1.0-2/actuar/inst/doc/risk.pdf |42410 +++++++++++++-------------- actuar-1.0-2/actuar/inst/doc/simulation.pdf |binary actuar-1.0-2/actuar/src/beta.c | 14 actuar-1.0-2/actuar/src/burr.c | 24 actuar-1.0-2/actuar/src/chisq.c | 14 actuar-1.0-2/actuar/src/dpq.h | 7 actuar-1.0-2/actuar/src/exp.c | 12 actuar-1.0-2/actuar/src/gamma.c | 12 actuar-1.0-2/actuar/src/genbeta.c | 14 actuar-1.0-2/actuar/src/genpareto.c | 26 actuar-1.0-2/actuar/src/invburr.c | 24 actuar-1.0-2/actuar/src/invexp.c | 14 actuar-1.0-2/actuar/src/invgamma.c | 20 actuar-1.0-2/actuar/src/invgauss.c | 2 actuar-1.0-2/actuar/src/invparalogis.c | 24 actuar-1.0-2/actuar/src/invpareto.c | 26 actuar-1.0-2/actuar/src/invtrgamma.c | 20 actuar-1.0-2/actuar/src/invweibull.c | 18 actuar-1.0-2/actuar/src/lgamma.c | 29 actuar-1.0-2/actuar/src/llogis.c | 27 actuar-1.0-2/actuar/src/lnorm.c | 2 actuar-1.0-2/actuar/src/paralogis.c | 24 actuar-1.0-2/actuar/src/pareto.c | 13 actuar-1.0-2/actuar/src/pareto1.c | 9 actuar-1.0-2/actuar/src/phtype.c | 2 actuar-1.0-2/actuar/src/trbeta.c | 28 actuar-1.0-2/actuar/src/trgamma.c | 26 actuar-1.0-2/actuar/src/weibull.c | 14 37 files changed, 22935 insertions(+), 22776 deletions(-)
Author: Dan Bode
Diff between Rsge versions 0.6.2 dated 2009-05-14 and 0.6.3 dated 2009-05-15
Title: Interface to the SGE Queuing System
Description: This package provides functions for using R with the SGE
cluster/grid queuing system.
DESCRIPTION | 4 +--
R/sge.options.R | 69 +++++++++++++++++++++++++++++------------------------
R/zzz.R | 1
README | 27 ++++++++++++++------
inst/README | 27 ++++++++++++++------
man/sge.options.Rd | 4 +++
6 files changed, 83 insertions(+), 49 deletions(-)
Author: Markus Loecher, Sense Networks
Title: Overlays on Google map tiles in R
Description: This package serves two purposes: (i) Provide a
comfortable R interface to query the Google server for static
maps, and (ii) Use the map as a background image to overlay
plots within R. This requires proper coordinate scaling.
Diff between RgoogleMaps versions 1.1 dated 2009-05-13 and 1.1.1 dated 2009-05-15
RgoogleMaps-1.1.1/RgoogleMaps/DESCRIPTION | 6 - RgoogleMaps-1.1.1/RgoogleMaps/inst/doc/RgoogleMaps-intro.Rnw | 43 +++-------- RgoogleMaps-1.1.1/RgoogleMaps/inst/doc/RgoogleMaps-intro.pdf |binary RgoogleMaps-1.1.1/RgoogleMaps/inst/doc/RgoogleMaps-intro.tex | 43 +++-------- RgoogleMaps-1.1.1/RgoogleMaps/man/RgoogleMaps-package.Rd | 2 RgoogleMaps-1.1/RgoogleMaps/inst/doc/MyTile4.jpg |only 6 files changed, 32 insertions(+), 62 deletions(-)
Author: Spencer Graves, Sundar Dorai-Raj, and Romain Francois
Title: RSiteSearch
Description: Alternative interfaces to RSiteSearch
Diff between RSiteSearch versions 0.1-5 dated 2009-05-04 and 1.0-3 dated 2009-05-15
DESCRIPTION | 12 ++++++------ NAMESPACE | 5 +++++ NEWS |only R/HTML.RSiteSearch.R | 5 +++-- R/Ops.RSiteSearch.R |only R/PackageSum2.R |only R/PackageSummary.R |only R/RSiteSearch.function.R | 34 ++++++++++++++++++++-------------- R/hits.R |only R/intersectRSiteSearch.R |only R/sortRSiteSearch.R |only R/summary.RSiteSearch.R | 7 ++++--- R/unionRSiteSearch.R |only man/PackageSum2.Rd |only man/PackageSummary.Rd |only man/RSiteSearch.function.Rd | 26 +++++++++++++++++++------- man/hits.Rd |only man/sortRSiteSearch.Rd |only man/summary.RSiteSearch.Rd | 11 ++++------- man/unionRSiteSearch.Rd |only 20 files changed, 61 insertions(+), 39 deletions(-)
Author: Satwik Rajaram and Yoshi Oono
Title: Non-clustered heatmap alternatives
Description: NeatMap is a package to create heatmap like plots in 2 and
3 dimensions, without the need for cluster analysis. Like the
heatmap, the plots created by NeatMap display both a
dimensionally reduced representation of the data as well as the
data itself. They are intended to be used in conjunction with
dimensional reduction techniques such as PCA.
Diff between NeatMap versions 0.1 dated 2009-05-13 and 0.2 dated 2009-05-15
DESCRIPTION | 6 +++--- src/nMDS_R.h | 2 +- 2 files changed, 4 insertions(+), 4 deletions(-)
Author: Jarrod Hadfield
Title: MCMC Generalised Linear Mixed Models
Description: MCMC Generalised Linear Mixed Models
Diff between MCMCglmm versions 1.09 dated 2009-04-17 and 1.10 dated 2009-05-15
DESCRIPTION | 8 ++++---- R/MCMCglmm.R | 22 +++++++++++----------- R/posterior.mode.R | 10 ++++++++-- inst/CITATION | 4 ++-- inst/doc/Figures/TEST.R | 42 +++++++++++++++++++++--------------------- inst/doc/Figures/Tutorial.Rnw | 3 +-- inst/doc/Tutorial.Rnw | 2 +- inst/doc/Tutorial.pdf |binary man/MCMCglmm.Rd | 4 +++- man/posterior.mode.Rd | 10 +++++----- src/MCMCglmm.cc | 19 ++++++++++++++----- 11 files changed, 70 insertions(+), 54 deletions(-)
Author: Walter Resch with information from 'Measurement System
Assessment Via Generalized Inference' by Michael Hamada and Sam
Weerandi
Title: Gauge R and R Confidence Intervals
Description: Generates confidence intervals for the variance components
for Gauge R and R data using ANOVA with the Satterthwaite
approximation as well as the method of Generalized Inference.
Diff between GRRGI versions 1.0 dated 2009-01-14 and 1.1 dated 2009-05-15
DESCRIPTION | 34 ++++--- R/MLGI.R | 225 +++++++++++++++++++++++++++------------------------ R/RRgraph.R | 2 R/anovasat.R | 148 +++++++++++++++++---------------- R/intsignif.R | 18 ++-- R/ratiograph.R | 4 Read-and-delete-me |only data/GI1.rda |binary data/GI2.rda |binary man/GI1.Rd | 14 +-- man/GI2.Rd | 14 +-- man/GRRGI-package.Rd | 32 +++++-- man/HWstudy1.Rd | 9 +- man/HWstudy2.Rd | 9 +- man/MLGI.Rd | 21 +++- man/RRgraph.Rd | 14 ++- man/anovasat.Rd | 19 +++- man/intsignif.Rd | 8 + man/ratiograph.Rd | 13 ++ man/sat1.Rd | 14 ++- man/sat2.Rd | 14 ++- 21 files changed, 354 insertions(+), 258 deletions(-)
Author: Hadley Wickham
Diff between DescribeDisplay versions 0.1.3 dated 2007-03-14 and 0.2.0 dated 2009-05-15
More information about DescribeDisplay at CRAN
Title: R interface to DescribeDisplay (GGobi plugin)
Description: Produce publication quality graphics from output of
GGobi's describe display plugin
DescribeDisplay-0.1.3/DescribeDisplay/NAMESPACE |only
DescribeDisplay-0.1.3/DescribeDisplay/cattest.r |only
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DescribeDisplay-0.2.0/DescribeDisplay/R/ggplot.r | 180 +++---
DescribeDisplay-0.2.0/DescribeDisplay/R/plots.r | 290 ++++------
DescribeDisplay-0.2.0/DescribeDisplay/R/utils.r | 80 +-
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91 files changed, 402 insertions(+), 388 deletions(-)
Permanent link
Author: Dan Bode
Diff between Rsge versions 0.6.1 dated 2008-12-10 and 0.6.2 dated 2009-05-14
Title: Interface to the SGE Queuing System
Description: This package provides functions for using R with the SGE
cluster/grid queuing system.
DESCRIPTION | 20 +++++++++++---------
R/sge.options.R | 2 +-
2 files changed, 12 insertions(+), 10 deletions(-)
Author: John Maindonald and W. John Braun
Title: Data Analysis And Graphics
Description: various data sets used in examples and exercises in the
book Maindonald, J.H. and Braun, W.J. (2003, 2007) "Data
Analysis and Graphics Using R".
Diff between DAAG versions 0.98 dated 2009-01-14 and 0.99-1 dated 2009-05-14
DAAG-0.98/DAAG/CVbinary.R |only DAAG-0.98/DAAG/cv.binary.R |only DAAG-0.98/DAAG/inst/seedrates.txt |only DAAG-0.98/DAAG/socsupport.R |only DAAG-0.99-1/DAAG/DESCRIPTION | 14 ++++++----- DAAG-0.99-1/DAAG/INDEX | 39 ++++++++++++++++++++++++++++++- DAAG-0.99-1/DAAG/R/errorsINseveral.R |only DAAG-0.99-1/DAAG/R/errorsINx.R |only DAAG-0.99-1/DAAG/data/bomregions.RData |only DAAG-0.99-1/DAAG/data/cricketer.RData |only DAAG-0.99-1/DAAG/data/edcCO2.RData |only DAAG-0.99-1/DAAG/data/edcT.RData |only DAAG-0.99-1/DAAG/data/gaba.RData |only DAAG-0.99-1/DAAG/data/grog.RData |only DAAG-0.99-1/DAAG/data/hotspots.RData |only DAAG-0.99-1/DAAG/data/hotspots2006.RData |only DAAG-0.99-1/DAAG/data/intersalt.RData |only DAAG-0.99-1/DAAG/data/nassCDS.RData |only DAAG-0.99-1/DAAG/data/nasshead.RData |only DAAG-0.99-1/DAAG/data/nihills.RData |only DAAG-0.99-1/DAAG/data/nswdemo.RData |only DAAG-0.99-1/DAAG/data/progression.RData |only DAAG-0.99-1/DAAG/data/psid1.RData |only DAAG-0.99-1/DAAG/data/psid2.RData |only DAAG-0.99-1/DAAG/data/psid3.RData |only DAAG-0.99-1/DAAG/data/rockArt.RData |only DAAG-0.99-1/DAAG/data/worldRecords.RData |only DAAG-0.99-1/DAAG/inst/doc |only DAAG-0.99-1/DAAG/inst/misc |only DAAG-0.99-1/DAAG/man/DAAG-package.Rd |only DAAG-0.99-1/DAAG/man/bomregions.Rd |only DAAG-0.99-1/DAAG/man/cricketer.Rd |only DAAG-0.99-1/DAAG/man/edcCO2.Rd |only DAAG-0.99-1/DAAG/man/edcT.Rd |only DAAG-0.99-1/DAAG/man/errorsINseveral.Rd |only DAAG-0.99-1/DAAG/man/errorsINx.Rd |only DAAG-0.99-1/DAAG/man/gaba.Rd |only DAAG-0.99-1/DAAG/man/grog.Rd |only DAAG-0.99-1/DAAG/man/hotspots.Rd |only DAAG-0.99-1/DAAG/man/hotspots2006.Rd |only DAAG-0.99-1/DAAG/man/intersalt.Rd |only DAAG-0.99-1/DAAG/man/monica.Rd | 2 - DAAG-0.99-1/DAAG/man/nassCDS.Rd |only DAAG-0.99-1/DAAG/man/nasshead.Rd |only DAAG-0.99-1/DAAG/man/nihills.Rd |only DAAG-0.99-1/DAAG/man/nsw74psidA.Rd | 5 --- DAAG-0.99-1/DAAG/man/nswdemo.Rd |only DAAG-0.99-1/DAAG/man/progression.Rd |only DAAG-0.99-1/DAAG/man/psid1.Rd |only DAAG-0.99-1/DAAG/man/psid2.Rd |only DAAG-0.99-1/DAAG/man/psid3.Rd |only DAAG-0.99-1/DAAG/man/recordTimes.Rd |only DAAG-0.99-1/DAAG/man/rockArt.Rd |only 53 files changed, 48 insertions(+), 12 deletions(-)
Author: S-PLUS original by Phil Everson; R port by Roger D. Peng
Diff between tlnise versions 1.0 dated 2009-03-09 and 1.0-1 dated 2009-05-14
Title: Two-level normal independent sampling estimation
Description: Functions for two level normal models as described in
Everson and Morris (2000). J. R. Statist. Soc. B, 62 prt 2,
pp.399--412.
DESCRIPTION | 31 ++++++++++++++++++-------------
R/zzz.R | 2 +-
tests/reg-tests.Rout.save | 4 ++--
3 files changed, 21 insertions(+), 16 deletions(-)
Author: Adrian Baddeley
Diff between spatstat versions 1.15-2 dated 2009-04-16 and 1.15-3 dated 2009-05-14
Title: Spatial Point Pattern analysis, model-fitting, simulation, tests
Description: A package for analysing spatial data, mainly Spatial Point
Patterns, including multitype/marked points and spatial
covariates, in any two-dimensional spatial region. Contains
functions for plotting spatial data, exploratory data analysis,
model-fitting, simulation, spatial sampling, model diagnostics,
and formal inference. Data types include point patterns, line
segment patterns, spatial windows, and pixel images. Point
process models can be fitted to point pattern data. Cluster
type models are fitted by the method of minimum contrast. Very
general Gibbs point process models can be fitted to point
pattern data using a function ppm similar to lm or glm. Models
may include dependence on covariates, interpoint interaction
and dependence on marks. Fitted models can be simulated
automatically. Also provides facilities for formal inference
(such as chi-squared tests) and model diagnostics (including
simulation envelopes, residuals, residual plots and Q-Q plots).
spatstat-1.15-2/spatstat/.Rbuildindex.5392 |only
spatstat-1.15-3/spatstat/DESCRIPTION | 26
spatstat-1.15-3/spatstat/INDEX | 6
spatstat-1.15-3/spatstat/R/Kest.S | 7
spatstat-1.15-3/spatstat/R/Kmeasure.R | 6
spatstat-1.15-3/spatstat/R/Kmulti.S | 10
spatstat-1.15-3/spatstat/R/connected.R |only
spatstat-1.15-3/spatstat/R/density.ppp.R | 110 +++
spatstat-1.15-3/spatstat/R/distbdry.S | 22
spatstat-1.15-3/spatstat/R/distmap.R | 88 +-
spatstat-1.15-3/spatstat/R/images.R | 5
spatstat-1.15-3/spatstat/R/kstest.R | 4
spatstat-1.15-3/spatstat/R/nncorr.R | 26
spatstat-1.15-3/spatstat/R/plot.ppp.S | 18
spatstat-1.15-3/spatstat/R/quadrattest.R | 13
spatstat-1.15-3/spatstat/R/ripras.S | 9
spatstat-1.15-3/spatstat/R/summary.im.R | 6
spatstat-1.15-3/spatstat/R/wingeom.S | 13
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spatstat-1.15-3/spatstat/demo/data.R | 2
spatstat-1.15-3/spatstat/demo/spatstat.R | 8
spatstat-1.15-3/spatstat/inst/doc/shapefiles.pdf | 677 +++++++++++------------
spatstat-1.15-3/spatstat/man/00spatstat.Rd | 10
spatstat-1.15-3/spatstat/man/chorley.Rd | 4
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spatstat-1.15-3/spatstat/man/distmap.owin.Rd | 32 -
spatstat-1.15-3/spatstat/man/humberside.Rd | 5
spatstat-1.15-3/spatstat/man/lansing.Rd | 6
spatstat-1.15-3/spatstat/man/longleaf.Rd | 5
spatstat-1.15-3/spatstat/man/murchison.Rd | 6
spatstat-1.15-3/spatstat/man/nncorr.Rd | 159 +++--
spatstat-1.15-3/spatstat/man/ripras.Rd | 7
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spatstat-1.15-3/spatstat/src/distmapbin.c | 16
37 files changed, 859 insertions(+), 535 deletions(-)
Author: Eric Gilleland, Rick Katz, Greg Young
Title: Extreme value toolkit.
Description: Uses Stuart Coles' (Coles, Stewart, "An introduction to
statistical modeling of extreme values", Springer-Verlag,
London 2001) S-plus functions as ported to the R programming
language (ismev) by Alec Stephenson
(http://www.maths.lancs.ac.uk/~stephena/). This toolkit
provides a Graphical User Interface (GUI) to ismev for
pedagogical purposes.
Diff between extRemes versions 1.59 dated 2009-01-27 and 1.60 dated 2009-05-14
DESCRIPTION | 20 ++++---- R/extremes.gui.R | 2 R/gevf.gui.R | 118 ++++++++++++++++++++++++++++++++++++++++++++--- R/gpdf.gui.R | 126 ++++++++++++++++++++++++++++++++++++++++++++++----- R/scrubber.gui.R | 72 ++++++++++++++++++----------- man/gevrlgradient.Rd | 2 6 files changed, 285 insertions(+), 55 deletions(-)
Author: David Ardia
Diff between DEoptim versions 1.3-0 dated 2008-12-04 and 1.3-3 dated 2009-05-14
Title: Differential Evolution Optimization
Description: This package provides the DEoptim function which performs
Differential Evolution Optimization (evolutionary algorithm).
DEoptim-1.3-0/DEoptim/CHANGES |only
DEoptim-1.3-0/DEoptim/XEmacs-21.4.20.lnk |only
DEoptim-1.3-3/DEoptim/COPYRIGHTS |only
DEoptim-1.3-3/DEoptim/DESCRIPTION | 25 +++++++------
DEoptim-1.3-3/DEoptim/NEWS |only
DEoptim-1.3-3/DEoptim/R/DEoptim.R | 50 +++++++++++++++++++++------
DEoptim-1.3-3/DEoptim/THANKS |only
DEoptim-1.3-3/DEoptim/demo/DEoptim.R | 3 -
DEoptim-1.3-3/DEoptim/inst/CITATION | 25 +++++++------
DEoptim-1.3-3/DEoptim/man/DEoptim-methods.Rd | 18 +++++++--
DEoptim-1.3-3/DEoptim/man/DEoptim.Rd | 13 +++----
11 files changed, 88 insertions(+), 46 deletions(-)
Author: Sven Knoth, ...
Title: Statistical Process Control
Description: Evaluation of control charts by means of the zero-state,
steady-state ARL (Average Run Length). Setting up control
charts for given in-control ARL and plotting of the related
figures. The control charts under consideration are one- and
two-sided EWMA, CUSUM, and Shiryaev-Roberts schemes for
monitoring the mean of normally distributed independent data.
Now, the ARL calculation of the same set of schemes under drift
are added. Other charts and parameters are in preparation.
Further SPC areas will be covered as well (sampling plans,
capability indices ...).
Diff between spc versions 0.21 dated 2007-10-14 and 0.3 dated 2009-05-13
spc-0.21/spc/INDEX |only spc-0.21/spc/spc.Rcheck |only spc-0.21/spc/src/Makevars |only spc-0.3/spc/DESCRIPTION | 29 spc-0.3/spc/R/sewma.arl.R | 6 spc-0.3/spc/R/sewma.crit.R | 63 spc-0.3/spc/R/xDcusum.arl.R |only spc-0.3/spc/R/xDewma.arl.R |only spc-0.3/spc/R/xDgrsr.arl.R |only spc-0.3/spc/R/xDshewhartrunsrules.arl.R |only spc-0.3/spc/R/xDshewhartrunsrulesFixedm.arl.R |only spc-0.3/spc/R/xewma.ad.R | 6 spc-0.3/spc/R/xewma.arl.R | 23 spc-0.3/spc/R/xewma.crit.R | 6 spc-0.3/spc/R/xgrsr.ad.R |only spc-0.3/spc/R/xgrsr.arl.R |only spc-0.3/spc/R/xgrsr.crit.R |only spc-0.3/spc/R/xsewma.arl.R |only spc-0.3/spc/R/xsewma.crit.R |only spc-0.3/spc/R/xshewhartrunsrules.ad.R |only spc-0.3/spc/R/xshewhartrunsrules.arl.R |only spc-0.3/spc/R/xshewhartrunsrules.crit.R |only spc-0.3/spc/R/xshewhartrunsrules.matrix.R |only spc-0.3/spc/index |only spc-0.3/spc/man/sewma.arl.Rd | 52 spc-0.3/spc/man/sewma.crit.Rd | 46 spc-0.3/spc/man/xDcusum.arl.Rd |only spc-0.3/spc/man/xDewma.arl.Rd |only spc-0.3/spc/man/xDgrsr.arl.Rd |only spc-0.3/spc/man/xDshewhartrunsrules.arl.Rd |only spc-0.3/spc/man/xewma.arl.Rd | 69 - spc-0.3/spc/man/xgrsr.ad.Rd |only spc-0.3/spc/man/xgrsr.arl.Rd |only spc-0.3/spc/man/xgrsr.crit.Rd |only spc-0.3/spc/man/xsewma.arl.Rd |only spc-0.3/spc/man/xsewma.crit.Rd |only spc-0.3/spc/man/xshewhartrunsrules.arl.Rd |only spc-0.3/spc/src/allspc.c | 1677 +++++++++++++++++++++++--- spc-0.3/spc/src/sewma_arl.c | 9 spc-0.3/spc/src/sewma_crit.c | 16 spc-0.3/spc/src/xDcusum_arl.c |only spc-0.3/spc/src/xDewma_arl.c |only spc-0.3/spc/src/xDgrsr_arl.c |only spc-0.3/spc/src/xewma_ad.c | 12 spc-0.3/spc/src/xewma_arl.c | 27 spc-0.3/spc/src/xgrsr_ad.c |only spc-0.3/spc/src/xgrsr_arl.c |only spc-0.3/spc/src/xgrsr_crit.c |only spc-0.3/spc/src/xsewma_crit.c | 8 49 files changed, 1783 insertions(+), 266 deletions(-)
Author: Martin Maechler, based on S original by Peter Rousseeuw
Diff between cluster versions 1.11.13 dated 2009-03-31 and 1.12.0 dated 2009-05-13
Title: Cluster Analysis Extended Rousseeuw et al.
Description: Cluster Analysis, extended original from Peter Rousseeuw,
Anja Struyf and Mia Hubert.
ChangeLog | 9 ++++++
DESCRIPTION | 8 +++---
R/agnes.q | 2 -
R/silhouette.R | 49 ++++++++++++++++++++++++-------------
tests/silhouette-default.R | 4 +++
tests/silhouette-default.Rout.save | 49 +++++++++++++++++++++++--------------
6 files changed, 82 insertions(+), 39 deletions(-)
Author: Max Kuhn. Contributions from Jed Wing, Steve Weston, Andre
Williams and Chris Keefer
Title: Classification and Regression Training
Description: Misc functions for training and plotting classification
and regression models
Diff between caret versions 4.12 dated 2009-05-08 and 4.15 dated 2009-05-13
DESCRIPTION | 10 R/createFolds.R | 63 +-- R/createGrid.R | 3 R/createModel.R | 26 + R/misc.R | 19 - R/predictionFunction.R | 7 R/print.train.R | 4 R/probFunction.R | 9 R/selection.R | 2 R/train.default.R | 2 inst/CHANGES | 19 + inst/doc/caretMisc.Rnw | 2 inst/doc/caretMisc.pdf | 774 +++++++++++++++++++++----------------------- inst/doc/caretSelection.pdf | 637 ++++++++++++++++++------------------ inst/doc/caretTrain.Rnw | 11 inst/doc/caretTrain.pdf |binary inst/doc/caretVarImp.pdf |binary man/train.Rd | 3 18 files changed, 837 insertions(+), 754 deletions(-)
Author: Vinzenz Erhardt
Title: Zero Inflated Generalized Poisson (ZIGP) regression models
Description: Fit, analyze and compare GP, ZIP and ZIGP regression
models
Diff between ZIGP versions 3.4 dated 2009-04-20 and 3.5 dated 2009-05-13
DESCRIPTION | 8 ++++---- inst/CITATION | 6 +++--- man/ZIGP-package.rd | 10 +++++----- 3 files changed, 12 insertions(+), 12 deletions(-)
Author: Alexis Gabadinho
Diff between TraMineR versions 1.2 dated 2009-04-15 and 1.2-1 dated 2009-05-13
Title: Sequences and trajectories mining for social scientists
Description: This package is a toolbox for sequence manipulation,
description, rendering and more generally sequence data mining
in the field of social sciences. Though it is primarily
intended for analyzing state or event sequences that describe
life courses such as family formation histories or professional
careers its features apply indeed also to many other kinds of
categorical sequence data. It accepts as input many different
sequence representations and provides tools for translating
sequences from one format to another. It offers several
statistical functions for describing and rendering sequences,
for computing distances between sequences with different
metrics among which optimal matching, the longest common prefix
and the longest common subsequence, and simple functions for
extracting the most frequent subsequences and identifying the
most discriminating ones among them. A user's guide can be
found on TraMineR's web page.
TraMineR-1.2-1/TraMineR/DESCRIPTION | 8
TraMineR-1.2-1/TraMineR/NAMESPACE | 2
TraMineR-1.2-1/TraMineR/NEWS | 12
TraMineR-1.2-1/TraMineR/R/BIOSPELL_to_STS.R | 17
TraMineR-1.2-1/TraMineR/R/TraMineR-fplot.R | 3
TraMineR-1.2-1/TraMineR/R/TraMineR-iplot.R | 3
TraMineR-1.2-1/TraMineR/R/dissassoc.R | 3
TraMineR-1.2-1/TraMineR/R/disscenter.R | 96 ++++-
TraMineR-1.2-1/TraMineR/R/disstree.r | 46 +-
TraMineR-1.2-1/TraMineR/R/plot.stslist.R | 22 -
TraMineR-1.2-1/TraMineR/R/seqdef.R | 9
TraMineR-1.2-1/TraMineR/R/seqdiff.R | 4
TraMineR-1.2-1/TraMineR/R/seqformat.R | 4
TraMineR-1.2-1/TraMineR/R/seqientdiff.R | 41 +-
TraMineR-1.2-1/TraMineR/R/seqmatsaltt.R |only
TraMineR-1.2-1/TraMineR/R/seqtrate.R | 8
TraMineR-1.2-1/TraMineR/man/dissassoc.Rd | 6
TraMineR-1.2-1/TraMineR/man/disscenter.Rd | 12
TraMineR-1.2-1/TraMineR/man/disstree.Rd | 42 +-
TraMineR-1.2-1/TraMineR/man/mvad.Rd | 3
TraMineR-1.2-1/TraMineR/man/plot.stslist.Rd | 7
TraMineR-1.2-1/TraMineR/man/seqdef.Rd | 10
TraMineR-1.2-1/TraMineR/man/seqiplot.Rd | 12
TraMineR-1.2-1/TraMineR/src/alignement.cpp |only
TraMineR-1.2-1/TraMineR/src/alignement.h |only
TraMineR-1.2-1/TraMineR/src/distancefunctions.cpp | 5
TraMineR-1.2-1/TraMineR/src/saltt.cpp | 399 ++++++++++++++--------
TraMineR-1.2-1/TraMineR/src/salttseq.cpp |only
TraMineR-1.2-1/TraMineR/src/salttseq.h |only
TraMineR-1.2-1/TraMineR/src/tmrsequence.cpp | 4
TraMineR-1.2/TraMineR/R/TSE_to_STS.R |only
TraMineR-1.2/TraMineR/R/TraMineR-rplot.R |only
TraMineR-1.2/TraMineR/R/seqrep.R |only
TraMineR-1.2/TraMineR/R/seqrplot.R |only
TraMineR-1.2/TraMineR/TODO.txt |only
35 files changed, 482 insertions(+), 296 deletions(-)
Author: Jeffrey A. Ryan, Josh M. Ulrich
Title: Extensible Time Series
Description: Provide for uniform handling of R's different time-based
data classes by extending zoo, maximizing native format
information preservation and allowing for user level
customization and extension, while simplifying cross-class
interoperability.
Diff between xts versions 0.6-4 dated 2009-01-09 and 0.6-5 dated 2009-05-13
xts-0.6-4/xts/inst/unitTests/report.html |only xts-0.6-4/xts/inst/unitTests/report.txt |only xts-0.6-4/xts/inst/unitTests/reportSummary.txt |only xts-0.6-4/xts/inst/unitTests/runit.indexClass.R.old |only xts-0.6-4/xts/inst/unitTests/runit.timeSeries.R.old |only xts-0.6-5/xts/DESCRIPTION | 14 xts-0.6-5/xts/DEVELOPMENT-NOTES | 8 xts-0.6-5/xts/NAMESPACE | 14 xts-0.6-5/xts/R/Ops.xts.R | 3 xts-0.6-5/xts/R/as.numeric.R | 116 + xts-0.6-5/xts/R/axTicksByTime.R | 2 xts-0.6-5/xts/R/bind.R | 6 xts-0.6-5/xts/R/coredata.xts.R | 6 xts-0.6-5/xts/R/endpoints.R | 47 xts-0.6-5/xts/R/index.R | 37 xts-0.6-5/xts/R/indexTZ.R |only xts-0.6-5/xts/R/merge.R | 4 xts-0.6-5/xts/R/na.R | 12 xts-0.6-5/xts/R/origin.fix.R | 41 xts-0.6-5/xts/R/plot.R | 35 xts-0.6-5/xts/R/print.R | 1 xts-0.6-5/xts/R/str.R | 7 xts-0.6-5/xts/R/timeBasedSeq.R | 9 xts-0.6-5/xts/R/utils.R | 14 xts-0.6-5/xts/R/xts.R | 16 xts-0.6-5/xts/R/xts.methods.R | 83 - xts-0.6-5/xts/R/xtsible.R | 4 xts-0.6-5/xts/R/zzz.R |only xts-0.6-5/xts/inst/doc/xts.pdf | 1465 +++++++++----------- xts-0.6-5/xts/man/indexTZ.Rd |only xts-0.6-5/xts/man/plot.xts.Rd | 7 xts-0.6-5/xts/man/xts-package.Rd | 4 xts-0.6-5/xts/src/attr.c | 31 xts-0.6-5/xts/src/coredata.c | 1 xts-0.6-5/xts/src/init.c | 2 xts-0.6-5/xts/src/leadingNA.c | 201 ++ xts-0.6-5/xts/src/merge.c | 16 xts-0.6-5/xts/src/rbind.c | 78 - xts-0.6-5/xts/src/readXts.c |only xts-0.6-5/xts/src/runSum.c | 8 xts-0.6-5/xts/src/subset.c | 45 xts-0.6-5/xts/src/totalcols.c | 4 xts-0.6-5/xts/src/xts.h | 11 43 files changed, 1383 insertions(+), 969 deletions(-)
Author: Original S functions by Stuart Coles, R port and R
documentation files by Alec Stephenson.
Title: An Introduction to Statistical Modeling of Extreme Values
Description: Functions to support the computations carried out in `An
Introduction to Statistical Modeling of Extreme Values' by
Stuart Coles. The functions may be divided into the following
groups; maxima/minima, order statistics, peaks over thresholds
and point processes.
Diff between ismev versions 1.32 dated 2009-01-01 and 1.33 dated 2009-05-13
DESCRIPTION | 24 +++++++++++++----------- INDEX | 3 +++ R/gev.R | 15 ++++++++------- R/gpd.R | 11 ++++++----- R/gum.R | 11 ++++++----- R/miscell.R | 6 +++--- R/pp.R | 23 ++++++++--------------- R/rlarg.R | 15 ++++++++------- man/gev.fit.Rd | 14 ++++++++++++++ man/gpd.fit.Rd | 8 +++++++- man/gum.fit.Rd | 15 +++++++++++++-- man/ismev-internal.Rd | 1 - man/ismev.Rd |only man/pp.fit.Rd | 15 ++++++++++++++- man/rlarg.fit.Rd | 16 +++++++++++++++- 15 files changed, 118 insertions(+), 59 deletions(-)
Author: Søren Højsgaard
Diff between doBy versions 3.7 dated 2008-12-21 and 3.9 dated 2009-05-13
Title: Groupwise computations of summary statistics and other utilities
Description: Facilities for groupwise computations of summary
statistics and other facilities for working with grouped data.
doBy-3.7/doBy/inst/doc/.build.timestamp |only
doBy-3.9/doBy/ChangeLog | 6
doBy-3.9/doBy/DESCRIPTION | 26 +-
doBy-3.9/doBy/R/splitBy.R | 49 ++-
doBy-3.9/doBy/inst/doc/doBy.pdf | 408 +++++++++++++++-----------------
doBy-3.9/doBy/man/doBy.Rd | 11
doBy-3.9/doBy/man/orderBy.Rd | 13 -
7 files changed, 270 insertions(+), 243 deletions(-)
Author: Stefano Iacus
Diff between cem versions 1.0.96 dated 2009-04-14 and 1.0.106 dated 2009-05-13
Title: CEM: Software for Coarsened Exact Matching
Description: This program implements the coarsened exact matching
algorithm (and many extensions) described in Stefano M. Iacus,
Gary King, and Giuseppe Porro, "Matching for Causal Inference
Without Balance Checking,"
http://gking.harvard.edu/files/abs/cem-abs.shtml
DESCRIPTION | 8
NAMESPACE | 1
R/att.R | 67 -
R/cem.R | 2
R/cem.main.R | 2
R/cem.summary.R | 44
R/relax.cem.R | 447 +++---
R/relax.plot.R | 5
inst/doc/JSS-paper.tex |only
inst/doc/Rplots.pdf | 74 -
inst/doc/cem.Rnw | 10
inst/doc/cem.pdf | 3199 ++++++++++++++++++++++++-------------------------
inst/doc/coarsen1.pdf | 34
inst/doc/coarsen2.pdf | 30
inst/doc/copyRd.Rout | 4
inst/doc/index.shtml | 8
inst/doc/teff.pdf | 42
man/att.Rd | 24
man/relax.cem.Rd | 3
19 files changed, 2027 insertions(+), 1977 deletions(-)
Author: Markus Loecher, Sense Networks
Title: Overlays on Google map tiles in R
Description: This package serves two purposes: (i) Provide a
comfortable R interface to query the Google server for static
maps, and (ii) Use the map as a background image to overlay
plots within R. This requires proper coordinate scaling.
Diff between RgoogleMaps versions 1.0 dated 2009-05-06 and 1.1 dated 2009-05-13
RgoogleMaps-1.0/RgoogleMaps/inst/doc/RgoogleMaps-intro.aux |only RgoogleMaps-1.0/RgoogleMaps/inst/doc/RgoogleMaps-intro.log |only RgoogleMaps-1.1/RgoogleMaps/DESCRIPTION | 6 +++--- RgoogleMaps-1.1/RgoogleMaps/inst/doc/RgoogleMaps-intro.pdf |binary RgoogleMaps-1.1/RgoogleMaps/man/RgoogleMaps-package.Rd | 2 +- 5 files changed, 4 insertions(+), 4 deletions(-)
Author: Jeffrey A. Ryan
Title: R API to Interactive Brokers Trader Workstation
Description: Provides native Raccess to Interactive Brokers Trader
Workstation API.
Diff between IBrokers versions 0.2-0 dated 2009-05-11 and 0.2-1 dated 2009-05-13
DESCRIPTION | 8 R/twsConnect.R | 3 R/zzz.R | 2 inst/doc/IBrokers.pdf | 684 ++++++++++++++++++++++------------------------- inst/doc/RealTime.pdf | 595 +++++++++++++++++++--------------------- man/IBrokers-package.Rd | 4 man/reqHistoricalData.Rd | 2 man/twsConnect.Rd | 15 - 8 files changed, 637 insertions(+), 676 deletions(-)
Author: Douglas Bates
Diff between lme4 versions 0.999375-28 dated 2008-12-14 and 0.999375-30 dated 2009-05-12
Title: Linear mixed-effects models using S4 classes
Description: Fit linear and generalized linear mixed-effects models.
ChangeLog | 27 +++++++++
DESCRIPTION | 17 +++---
R/carryOver.R | 9 ++-
R/lmer.R | 19 +++++--
inst/doc/AGQ.Rnw |only
inst/doc/AGQ.pdf |only
inst/doc/Implementation.pdf |binary
inst/doc/PLSvGLS.pdf |binary
inst/doc/SpecifyingLMMs.Rnw |only
inst/doc/SpecifyingLMMs.pdf |only
inst/doc/Theory.Rnw | 119 +++++++++++++++++++++++++++++++++++++++++---
inst/doc/Theory.pdf |binary
inst/doc/Theory.rel |only
inst/doc/auto |only
man/Penicillin.Rd | 2
man/refit.Rd | 1
src/lmer.c | 36 +++++++------
tests/StratVar.R |only
tests/lmer-1.R | 10 +++
tests/lmer-1.Rout.save | 25 +++++++--
tests/nlmer.Rout.save | 36 ++++++-------
21 files changed, 238 insertions(+), 63 deletions(-)
Author: Michael Malecki
Title: apsrtable model-output formatter for social science
Description: Formats latex tables from one or more model objects
side-by-side with standard errors below, not unlike tables
found in such journals as the American Political Science
Review.
Diff between apsrtable versions 0.7-3 dated 2009-05-10 and 0.7-4 dated 2009-05-12
DESCRIPTION | 8 ++++---- R/apsrtable.R | 2 +- inst/doc/guide.rel |only man/apsrtable.Rd | 48 +++++++++++++++++++++++++++++++++++------------- 4 files changed, 40 insertions(+), 18 deletions(-)
Author: Jose L. Izquierdo
Diff between Metabonomic versions 3.1.3.2 dated 2009-05-06 and 3.1.3.3 dated 2009-05-12
Title: GUI for Metabonomic Analysis
Description: Graphical User Interface for the Metabonomic Analysis
(Baseline, Normalization, Peak Detection, PCA, PLS, Nearest
Neigbourgt, Neural Network) developed to make easy this data
analysis.
Metabonomic-3.1.3.2/Metabonomic/inst |only
Metabonomic-3.1.3.3/Metabonomic/DESCRIPTION | 10 +-
Metabonomic-3.1.3.3/Metabonomic/R/Baseline.Correction.R | 70 +++++++++++++++-
3 files changed, 71 insertions(+), 9 deletions(-)
Author: Roger Koenker
Diff between quantreg versions 4.27 dated 2009-04-14 and 4.30 dated 2009-05-12
Title: Quantile Regression
Description: Quantile regression and related methods.
quantreg-4.27/quantreg/src/cholesky.c |only
quantreg-4.27/quantreg/src/ratfor/out |only
quantreg-4.27/quantreg/src/ratfor/rqbr.o |only
quantreg-4.27/quantreg/src/ratfor/rqbrold.o |only
quantreg-4.30/quantreg/DESCRIPTION | 8
quantreg-4.30/quantreg/R/anova.R | 124 ++-
quantreg-4.30/quantreg/R/quantreg.R | 58 -
quantreg-4.30/quantreg/R/rqss.R | 6
quantreg-4.30/quantreg/data/Bosco.rda |only
quantreg-4.30/quantreg/inst/ChangeLog | 25
quantreg-4.30/quantreg/inst/FAQ | 2
quantreg-4.30/quantreg/inst/doc/Rplots.pdf | 1104 +++++++++++++---------------
quantreg-4.30/quantreg/inst/doc/rq.pdf |binary
quantreg-4.30/quantreg/man/Bosco.Rd |only
quantreg-4.30/quantreg/man/anova.rq.Rd | 27
quantreg-4.30/quantreg/man/ranks.Rd | 10
quantreg-4.30/quantreg/src/cholesky.f |only
17 files changed, 728 insertions(+), 636 deletions(-)
Author: Pierre Chausse
Diff between gmm versions 1.0-4 dated 2009-03-11 and 1.0-6 dated 2009-05-12
Title: Generalized Method of Moments and Generalized Empirical
Likelihood
Description: It is a complete suite to estimate models based on moment
conditions. It includes the two step Generalized method of
moments (GMM) of Hansen(1982), the iterated GMM and continuous
updated estimator (CUE) of Hansen-Eaton-Yaron(1996) and several
methods that belong to the Generalized Empirical Likelihood
(GEL) family of estimators, as presented by Smith(1997),
Kitamura(1997), Newey-Smith(2004) and Anatolyev(2005).
DESCRIPTION | 19 +
NEWS | 4
R/gel.R | 5
R/gmm.R | 6
inst/doc/gmm_with_R.pdf | 477 ++++++++++++++++++++++++------------------------
5 files changed, 264 insertions(+), 247 deletions(-)
Author: S original by Venables & Ripley. R port by Brian Ripley
Diff between VR versions 7.2-46 dated 2009-03-10 and 7.2-47 dated 2009-05-12
Bundle: VR
Contains: MASS class nnet spatial
VR-7.2-46/VR/class/INDEX |only
VR-7.2-46/VR/nnet/INDEX |only
VR-7.2-46/VR/po |only
VR-7.2-46/VR/spatial/INDEX |only
VR-7.2-47/VR/DESCRIPTION | 18 +++++-----
VR-7.2-47/VR/MASS/inst/po/de |only
VR-7.2-47/VR/MASS/inst/po/en@quot/LC_MESSAGES/R-MASS.mo |binary
VR-7.2-47/VR/MASS/inst/po/fr/LC_MESSAGES/R-MASS.mo |binary
VR-7.2-47/VR/MASS/man/lm.ridge.Rd | 10 ++---
VR-7.2-47/VR/MASS/man/rlm.Rd | 4 ++
VR-7.2-47/VR/MASS/po |only
VR-7.2-47/VR/WHATS.NEW | 2 +
VR-7.2-47/VR/class/R/knn.R | 2 -
VR-7.2-47/VR/class/inst/po/de |only
VR-7.2-47/VR/class/inst/po/en@quot/LC_MESSAGES/R-class.mo |binary
VR-7.2-47/VR/class/inst/po/fr/LC_MESSAGES/R-class.mo |binary
VR-7.2-47/VR/class/man/condense.Rd | 1
VR-7.2-47/VR/class/man/knn.Rd | 1
VR-7.2-47/VR/class/man/knn.cv.Rd | 1
VR-7.2-47/VR/class/man/knn1.Rd | 1
VR-7.2-47/VR/class/man/lvq1.Rd | 1
VR-7.2-47/VR/class/man/lvq2.Rd | 1
VR-7.2-47/VR/class/man/lvq3.Rd | 1
VR-7.2-47/VR/class/man/lvqinit.Rd | 1
VR-7.2-47/VR/class/man/multiedit.Rd | 1
VR-7.2-47/VR/class/man/olvq1.Rd | 1
VR-7.2-47/VR/class/man/reduce.nn.Rd | 1
VR-7.2-47/VR/class/po |only
VR-7.2-47/VR/nnet/inst/po/de |only
VR-7.2-47/VR/nnet/inst/po/en@quot/LC_MESSAGES/R-nnet.mo |binary
VR-7.2-47/VR/nnet/man/nnet.Hess.Rd | 1
VR-7.2-47/VR/nnet/man/nnet.Rd | 1
VR-7.2-47/VR/nnet/man/predict.nnet.Rd | 1
VR-7.2-47/VR/nnet/po |only
VR-7.2-47/VR/spatial/inst/po/de |only
VR-7.2-47/VR/spatial/inst/po/en@quot/LC_MESSAGES/R-spatial.mo |binary
VR-7.2-47/VR/spatial/po |only
37 files changed, 22 insertions(+), 28 deletions(-)
Author: Roger Koenker
Diff between SparseM versions 0.79 dated 2009-01-26 and 0.80 dated 2009-05-12
Title: Sparse Linear Algebra
Description: Basic linear algebra for sparse matrices
SparseM-0.79/SparseM/REVISIONS |only
SparseM-0.80/SparseM/DESCRIPTION | 14 ++++++++------
SparseM-0.80/SparseM/R/SparseM.R | 4 ++--
SparseM-0.80/SparseM/inst/ChangeLog |only
SparseM-0.80/SparseM/inst/doc/Rplots.pdf | 4 ++--
SparseM-0.80/SparseM/inst/doc/SparseM.pdf |binary
6 files changed, 12 insertions(+), 10 deletions(-)
Author: Holger Schwender, Arno Fritsch
Title: Analysis of High-Dimensional Categorical Data such as SNP Data
Description: Tools for the analysis of high-dimensional data
developed/implemented at the group "Statistical Complexity
Reduction In Molecular Epidemiology" (SCRIME). Main focus is on
SNP data. But most of the functions can also be applied to
other types of categorical data.
Diff between scrime versions 1.1.2 dated 2009-01-27 and 1.1.4 dated 2009-05-11
DESCRIPTION | 34 ++++++++++++++++++--------------- R/buildSNPannotation.R | 1 R/getResponse.R |only R/simulateSNPcatResponse.R | 43 +++++++----------------------------------- inst/CHANGES | 11 ++++++++++ man/rowChisq2Class.Rd | 5 ++++ man/simulateSNPcatResponse.Rd | 22 ++++++++++++++++----- 7 files changed, 61 insertions(+), 55 deletions(-)
Author: Roger D. Peng
Diff between gpclib versions 1.4-3 dated 2009-02-16 and 1.4-4 dated 2009-05-11
Title: General Polygon Clipping Library for R
Description: General polygon clipping routines for R based on Alan
Murta's C library
DESCRIPTION | 30 +++++++++++++++++-------------
R/zzz.R | 6 ++----
tests/reg-tests.Rout.save | 13 +++++++------
3 files changed, 26 insertions(+), 23 deletions(-)
Author: David Hajage
Title: Export R objects to asciidoc or txt2tags
Description: Coerce R object to asciidoc or txt2tags syntax. Package
comes with two drivers for Sweave.
Diff between ascii versions 0.1.2 dated 2009-05-04 and 0.1.3 dated 2009-05-11
DESCRIPTION | 8 ++++---- NAMESPACE | 3 ++- R/RweaveAsciidoc.r | 1 + R/SweaveAscii.r |only R/SweaveSyntaxAscii.r |only Rplots.pdf | 4 ++-- TODO | 1 + index-ggplot2.pdf | 4 ++-- man/RweaveAsciidoc.Rd | 12 +++++++++--- man/RweaveT2t.Rd | 12 +++++++++--- man/SweaveAscii.Rd |only man/ascii.Rd | 2 +- man/print.ascii.Rd | 4 ++-- 13 files changed, 33 insertions(+), 18 deletions(-)
Author: Jeffrey A. Ryan
Title: R API to Interactive Brokers Trader Workstation
Description: Provides native Raccess to Interactive Brokers Trader
Workstation API.
Diff between IBrokers versions 0.1-3 dated 2008-11-18 and 0.2-0 dated 2009-05-11
DESCRIPTION | 11 NAMESPACE | 19 R/eWrapper.MktData.CSV.R |only R/eWrapper.MktDepth.CSV.R |only R/eWrapper.R |only R/eventHandlers.R | 63 +- R/processMsg.R |only R/reqAccountUpdates.R | 19 R/reqContractDetails.R | 53 + R/reqCurrentTime.R | 27 R/reqHistoricalData.R | 49 + R/reqIds.R | 31 - R/reqMktData.R | 156 ----- R/reqMktDepth.R | 79 -- R/reqRealTimeBars.R | 89 +-- R/setServerLogLevel.R |only R/twsConnect.R | 32 - R/twsContract.R | 38 + R/twsDisconnect.R | 4 R/twsIDs.R | 7 R/twsOption.R | 6 R/zzz.R | 2 inst/doc/IBrokers.pdf | 1293 ++++++++++++++++++++-------------------------- inst/doc/RealTime.Rnw |only inst/doc/RealTime.pdf |only man/IBrokers-package.Rd | 26 man/eWrapper.Rd |only man/internal.Rd | 1 man/processMsg.Rd |only man/reqContractDetails.Rd | 33 + man/reqHistoricalData.Rd | 12 man/reqMktData.Rd | 40 - man/reqMktDepth.Rd | 10 man/reqRealTimeBars.Rd | 12 man/setServerLogLevel.Rd |only man/twsCALLBACK.Rd |only man/twsConnect.Rd | 21 man/twsContract.Rd | 17 man/twsCurrency.Rd | 2 man/twsEquity.Rd | 2 man/twsFuture.Rd | 2 man/twsOption.Rd | 11 42 files changed, 1032 insertions(+), 1135 deletions(-)
Author: John Boik
Diff between mixlow versions 0.01.1 dated 2009-02-23 and 0.01-2 dated 2009-05-11
Title: mixlow method for assessing drug synergism
Description: mixlow software for assessing drug synergism/antagonism
DESCRIPTION | 14 ++++++++------
man/plotLoeweData.Rd | 2 +-
2 files changed, 9 insertions(+), 7 deletions(-)
Author: Patrick E. Meyer, Frederic Lafitte, Gianluca Bontempi
Title: Mutual Information Network Inference
Description: This package implements various algorithms for inferring
mutual information networks from data. All the algorithms
compute the mutual information matrix in order to infer a
network. Several mutual information estimators are implemented.
Diff between minet versions 1.4.0 dated 2009-05-10 and 1.6.0 dated 2009-05-11
minet-1.4.0/minet/inst/doc/minet.bib |only minet-1.6.0/minet/CHANGES | 13 minet-1.6.0/minet/DESCRIPTION | 7 minet-1.6.0/minet/R/build.mim.R | 5 minet-1.6.0/minet/R/disc.R | 6 minet-1.6.0/minet/demo/demo.R | 2 minet-1.6.0/minet/inst/doc/minet.Rnw | 187 +- minet-1.6.0/minet/inst/doc/minet.pdf | 2311 ++++++++++++++++------------------- minet-1.6.0/minet/man/build.mim.Rd | 14 minet-1.6.0/minet/man/disc.Rd | 7 minet-1.6.0/minet/man/minet.Rd | 4 minet-1.6.0/minet/man/mr.net.Rd | 27 minet-1.6.0/minet/man/syn.data.Rd | 5 minet-1.6.0/minet/man/vis.res.Rd | 7 minet-1.6.0/minet/src/disc.cpp | 4 15 files changed, 1286 insertions(+), 1313 deletions(-)
Author: Torsten Hothorn, Kurt Hornik, Mark A. van de Wiel and Achim
Zeileis
Title: Conditional Inference Procedures in a Permutation Test Framework
Description: Conditional inference procedures for the general
independence problem including two-sample, K-sample
(non-parametric ANOVA), correlation, censored, ordered and
multivariate problems.
Diff between coin versions 1.0-3 dated 2009-04-01 and 1.0-4 dated 2009-05-11
CHANGES | 5 ++++ DESCRIPTION | 8 +++--- R/ClassicalTests.R | 47 ++++++++++++++++++++++++--------------- R/MTP.R | 1 inst/doc/LegoCondInf.pdf |binary inst/doc/MAXtest.Rnw | 2 - inst/doc/MAXtest.pdf |binary inst/doc/coin.pdf |binary inst/doc/coin_implementation.pdf |binary inst/doc/references.bib | 6 ++-- tests/bugfixes.R | 6 ++++ tests/bugfixes.Rout.save | 28 +++++++++++++++++++++-- 12 files changed, 75 insertions(+), 28 deletions(-)
Author: Tomoaki Nakatani
Diff between ccgarch versions 0.1.3 dated 2009-05-04 and 0.1.4-1 dated 2009-05-11
Title: Conditional Correlation GARCH models
Description: Functions for estimating and simulating the family of the
CC-GARCH models.
DESCRIPTION | 8 ++++----
NAMESPACE | 1 +
R/dcc_estimation.R | 16 ++++++++--------
R/loglik_dcc.R |only
inst/CITATION | 19 ++++++++++++-------
man/loglik_dcc.Rd |only
6 files changed, 25 insertions(+), 19 deletions(-)
Author: David Ardia
Diff between bayesGARCH versions 1-00.02 dated 2008-12-04 and 1-00.04 dated 2009-05-11
Title: Bayesian Estimation of the GARCH(1,1) Model with Student-t
Innovations
Description: This package provides the bayesGARCH function which
performs the Bayesian estimation of the GARCH(1,1) model with
Student's t innovations.
bayesGARCH-1-00.02/bayesGARCH/XEmacs-21.4.20.lnk |only
bayesGARCH-1-00.04/bayesGARCH/COPYRIGHTS |only
bayesGARCH-1-00.04/bayesGARCH/DESCRIPTION | 28 +++--
bayesGARCH-1-00.04/bayesGARCH/NEWS |only
bayesGARCH-1-00.04/bayesGARCH/R/onload.R | 2
bayesGARCH-1-00.04/bayesGARCH/README | 21 +---
bayesGARCH-1-00.04/bayesGARCH/THANKS |only
bayesGARCH-1-00.04/bayesGARCH/inst/CITATION | 109 ++++++++---------------
bayesGARCH-1-00.04/bayesGARCH/man/bayesGARCH.Rd | 59 +++++++-----
bayesGARCH-1-00.04/bayesGARCH/man/dem2gbp.Rd | 17 ++-
10 files changed, 110 insertions(+), 126 deletions(-)
Author: Murray Aitkin, Brian Francis, John Hinde, Ross Darnell
Diff between SMIR versions 0.01 dated 2009-05-04 and 0.02 dated 2009-05-11
Title: Companion to Statistical Modelling in R
Description: This package accompanies Aitkin et al, Statistical
Modelling in R, OUP, 2009. The package contains some functions
and datasets used in the text.
SMIR-0.01/SMIR/CITATION |only
SMIR-0.02/SMIR/DESCRIPTION | 10 ++--
SMIR-0.02/SMIR/data/stan.rda |binary
SMIR-0.02/SMIR/man/NPL.bands.Rd | 3 -
SMIR-0.02/SMIR/man/R2.Rd | 29 +----------
SMIR-0.02/SMIR/man/R2CV.Rd | 2
SMIR-0.02/SMIR/man/Rsq.Rd | 2
SMIR-0.02/SMIR/man/betablok.Rd | 12 ++--
SMIR-0.02/SMIR/man/bronchitis.Rd | 6 +-
SMIR-0.02/SMIR/man/byssinosis.Rd | 8 +--
SMIR-0.02/SMIR/man/cars.Rd | 6 +-
SMIR-0.02/SMIR/man/chd.Rd | 7 +-
SMIR-0.02/SMIR/man/claims.Rd | 9 +--
SMIR-0.02/SMIR/man/coxph.disparity.Rd | 2
SMIR-0.02/SMIR/man/disparity.Rd | 28 -----------
SMIR-0.02/SMIR/man/disparity.glm.Rd | 38 +--------------
SMIR-0.02/SMIR/man/disparity.lm.Rd | 38 ++-------------
SMIR-0.02/SMIR/man/faults.Rd | 5 --
SMIR-0.02/SMIR/man/feigl.Rd | 4 -
SMIR-0.02/SMIR/man/gehan.Rd | 6 +-
SMIR-0.02/SMIR/man/ghq.Rd | 5 --
SMIR-0.02/SMIR/man/hostility.Rd | 9 +--
SMIR-0.02/SMIR/man/insult.Rd | 4 -
SMIR-0.02/SMIR/man/lsat.Rd | 9 +--
SMIR-0.02/SMIR/man/miners.Rd | 18 ++++---
SMIR-0.02/SMIR/man/poison.Rd | 7 +-
SMIR-0.02/SMIR/man/prentice.Rd | 4 -
SMIR-0.02/SMIR/man/solv.Rd | 8 +--
SMIR-0.02/SMIR/man/stackloss.Rd | 6 +-
SMIR-0.02/SMIR/man/stan.Rd | 83 ++++++++++++++++++----------------
SMIR-0.02/SMIR/man/statlab.Rd | 7 +-
SMIR-0.02/SMIR/man/summary.treg.Rd | 37 ++-------------
SMIR-0.02/SMIR/man/toxaemia.Rd | 4 -
SMIR-0.02/SMIR/man/toxoplas.Rd | 8 +--
SMIR-0.02/SMIR/man/trees.Rd | 6 +-
SMIR-0.02/SMIR/man/treg.Rd | 4 -
SMIR-0.02/SMIR/man/trypanos.Rd | 7 --
SMIR-0.02/SMIR/man/vaso.Rd | 2
SMIR-0.02/SMIR/man/vietnam.Rd | 9 ++-
SMIR-0.02/SMIR/man/woolson.Rd | 8 ---
40 files changed, 163 insertions(+), 297 deletions(-)
Author: David Ardia, Lennart F. Hoogerheide and Herman K. van Dijk
Title: Adaptive Mixture of Student-t distributions
Description: This package provides functions to perform the fitting of
an adaptive mixture of Student-t distributions to a target
density through its kernel function. The mixture approximation
can then be used as the importance density in importance
sampling or as the candidate density in the Metropolis-Hastings
algorithm to obtain quantities of interest for the target
density itself.
Diff between AdMit versions 1-01.01 dated 2009-01-25 and 1-01.02 dated 2009-05-11
DESCRIPTION | 36 ++- NEWS | 7 R/onload.R | 2 README | 43 ---- inst/CITATION | 12 - inst/doc/AdMit.pdf | 494 ++++++++++++++++++++++++++-------------------------- inst/doc/Rplots.pdf | 4 man/AdMit.Rd | 2 man/AdMitIS.Rd | 2 man/AdMitMH.Rd | 4 man/Mit.Rd | 6 11 files changed, 298 insertions(+), 314 deletions(-)
Author: Gregory R. Warnes. Includes R source code and/or documentation
contributed by (in alphabetical order): Ben Bolker, Lodewijk
Bonebakker, Robert Gentleman, Wolfgang Huber Andy Liaw, Thomas
Lumley, Martin Maechler, Arni Magnusson, Steffen Moeller, Marc
Schwartz, Bill Venables
Title: Various R programming tools for plotting data
Description: Various R programming tools for plotting data
Diff between gplots versions 2.7.0 dated 2009-04-23 and 2.7.1 dated 2009-05-11
ChangeLog | 1187 +++++++++++++++++++------------------- DESCRIPTION | 6 NEWS | 34 - R/balloonplot.R | 4 R/heatmap.2.R | 847 ++++++++++++++------------- R/plotCI.R | 8 inst/ChangeLog | 1187 +++++++++++++++++++------------------- inst/NEWS | 34 - man/balloonplot.Rd | 2 man/bandplot.Rd | 4 man/boxplot.n.Rd | 4 man/colorpanel.Rd | 2 man/heatmap.2.Rd | 212 ++++-- man/hist2d.Rd | 4 man/ooplot.Rd | 2 man/overplot.Rd | 2 man/plot.lm2.Rd | 2 man/plotCI.Rd | 32 - man/plotmeans.Rd | 4 man/residplot.Rd | 4 man/sinkplot.Rd | 2 man/smartlegend.Rd | 2 man/space.Rd | 4 man/textplot.Rd | 2 man/wapply.Rd | 4 tests/heatmap2Test.Rout.save | 113 +++ tests/heatmap_to_heatmap.2_test.R |only 27 files changed, 2006 insertions(+), 1702 deletions(-)
Author: Stephen A Sefick Jr.
Title: Stream Metabolism-A package for calculating single station
metabolism from diurnal Oxygen curves
Description: This package contains functions for calculating GPP, NDM,
and R from single station diurnal Oxygen curves
Diff between StreamMetabolism versions 0.03-2 dated 2009-04-15 and 0.03-3 dated 2009-05-11
StreamMetabolism-0.03-2/StreamMetabolism/R/integration.R |only StreamMetabolism-0.03-3/StreamMetabolism/DESCRIPTION | 8 +- StreamMetabolism-0.03-3/StreamMetabolism/R/EcosystemProduction.20.R | 2 StreamMetabolism-0.03-3/StreamMetabolism/R/EcosystemProduction.K.R | 2 StreamMetabolism-0.03-3/StreamMetabolism/R/contiguous.zoo.R | 2 StreamMetabolism-0.03-3/StreamMetabolism/R/read.production.R | 2 StreamMetabolism-0.03-3/StreamMetabolism/R/simp.R |only StreamMetabolism-0.03-3/StreamMetabolism/R/sunrise.set.R | 2 StreamMetabolism-0.03-3/StreamMetabolism/R/window.chron.R | 2 StreamMetabolism-0.03-3/StreamMetabolism/inst/CITATION | 35 ++++++---- StreamMetabolism-0.03-3/StreamMetabolism/man/EcosystemProduction.20.Rd | 11 +-- StreamMetabolism-0.03-3/StreamMetabolism/man/EcosystemProduction.K.Rd | 10 +- StreamMetabolism-0.03-3/StreamMetabolism/man/EcosystemProduction.Rd | 8 +- StreamMetabolism-0.03-3/StreamMetabolism/man/read.production.Rd | 2 StreamMetabolism-0.03-3/StreamMetabolism/man/window.chron.Rd | 8 +- 15 files changed, 52 insertions(+), 42 deletions(-)
More information about StreamMetabolism at CRAN
Permanent link
Author: Nicola Lama
Diff between vbmp versions 1.3.0 dated 2007-07-24 and 1.12.0 dated 2009-05-10
Title: Variational Bayesian Multinomial Probit Regression
Description: Variational Bayesian Multinomial Probit Regression with
Gaussian Process Priors. It estimates class membership
posterior probability employing variational and sparse
approximation to the full posterior. This software also
incorporates feature weighting by means of Automatic Relevance
Determination.
DESCRIPTION | 38 +++++++++++++++++++++++---------------
NAMESPACE | 2 +-
R/computeKernel.R | 6 +++---
R/gaussQuad.R |only
R/genCPP.classic.R |only
R/genCPP.quad.R |only
R/plotDiagnostics.R | 6 +++---
R/predictCPP.R |only
R/tmean.classic.R |only
R/tmean.quad.R |only
R/vbmp.R | 37 ++++++++++++++++++-------------------
data |only
inst |only
man/BRCA12.Rd |only
man/covParams.Rd | 2 +-
man/lowerBound.Rd | 2 +-
man/predLik.Rd | 2 +-
man/predictCPP.rd |only
man/vbmp.Rd | 33 +++++++++++++++++++++++++--------
19 files changed, 76 insertions(+), 52 deletions(-)
Author: Rainer Opgen-Rhein, Verena Zuber, and Korbinian Strimmer.
Title: Shrinkage t Statistic and Correlation-Adjusted t Score
Description: This package implements the "shrinkage t" statistic
introduced in Opgen-Rhein and Strimmer (2007) and a shrinkage
estimate of the "correlation-adjusted t-score" (cat score)
described in Zuber and Strimmer (2009). It also offers a
convenient interface to a number of other regularized
t-statistics commonly employed in high-dimensional case-control
studies.
Diff between st versions 1.1.2 dated 2009-04-26 and 1.1.3 dated 2009-05-10
DESCRIPTION | 8 ++++---- NEWS | 6 ++++++ R/shrinkcat.R | 37 ++++++++++++++++++++++++++++++++----- man/shrinkcat.stat.Rd | 27 ++++++++++++++++++--------- man/st-internal.Rd | 1 + 5 files changed, 61 insertions(+), 18 deletions(-)
Author: Duncan Temple Lang
Diff between rggobi versions 2.1.13 dated 2009-05-05 and 2.1.14 dated 2009-05-10
Title: Interface between R and GGobi
Description: The rggobi package provides a command-line interface to
GGobi, an interactive and dynamic graphics package. Rggobi
complements GGobi's graphical user interface, providing a way
to fluidly transition between analysis and exploration, as well
as automating common tasks.
DESCRIPTION | 8 ++++----
R/gtk.r | 3 ++-
aclocal.m4 | 4 ++--
src/Makevars | 4 ++--
4 files changed, 10 insertions(+), 9 deletions(-)
Author: Alan Dabney
Diff between qvalue versions 1.1.1 dated 2009-02-24 and 1.18.0 dated 2009-05-10
Title: Q-value estimation for false discovery rate control
Description: This package takes a list of p-values resulting from the
simultaneous testing of many hypotheses and estimates their
q-values. The q-value of a test measures the proportion of
false positives incurred (called the false discovery rate) when
that particular test is called significant. Various plots are
automatically generated, allowing one to make sensible
significance cut-offs. Several mathematical results have
recently been shown on the conservative accuracy of the
estimated q-values from this software. The software can be
applied to problems in genomics, brain imaging, astrophysics,
and data mining.
qvalue-1.1.1/qvalue/INDEX |only
qvalue-1.1.1/qvalue/inst/doc/qvalue.log |only
qvalue-1.18.0/qvalue/DESCRIPTION | 46
qvalue-1.18.0/qvalue/R/qvalue.R | 2
qvalue-1.18.0/qvalue/inst/doc/my-qvalue-results.txt | 6342 ++++++++++----------
qvalue-1.18.0/qvalue/inst/doc/qvalue-002.eps | 62
qvalue-1.18.0/qvalue/inst/doc/qvalue-002.pdf | 207
qvalue-1.18.0/qvalue/inst/doc/qvalue-004.eps | 103
qvalue-1.18.0/qvalue/inst/doc/qvalue-004.pdf | 253
qvalue-1.18.0/qvalue/inst/doc/qvalue-006.eps | 545 -
qvalue-1.18.0/qvalue/inst/doc/qvalue-006.pdf | 967 +--
qvalue-1.18.0/qvalue/inst/doc/qvalue.pdf |binary
qvalue-1.18.0/qvalue/inst/doc/qvalue.tex | 4
qvalue-1.18.0/qvalue/man/qplot.rd | 4
qvalue-1.18.0/qvalue/man/qvalue.rd | 4
15 files changed, 4311 insertions(+), 4228 deletions(-)
Author: Aaron A. King, Edward L. Ionides, Carles Martinez Breto, Steve
Ellner, Bruce Kendall
Title: Statistical inference for partially observed Markov processes
Description: Inference methods for partially-observed Markov processes
Diff between pomp versions 0.23-5 dated 2009-05-04 and 0.23-6 dated 2009-05-10
DESCRIPTION | 10 +++++----- R/init.state-pomp.R | 4 ++-- inst/ChangeLog | 24 ++++++++++++++++++++++++ inst/doc/Rplots.pdf | 4 ++-- inst/doc/compiled_code_in_pomp.pdf |binary inst/doc/intro_to_pomp.pdf |binary inst/include/pomp.h | 11 +---------- src/eulermultinom.c | 8 ++++---- src/pomp.h | 11 +---------- tests/sir.R | 2 +- tests/sir.Rout.save | 10 +++++----- 11 files changed, 45 insertions(+), 39 deletions(-)
Author: Gaston Sanchez
Diff between plspm versions 0.1-1 dated 2009-05-04 and 0.1-2 dated 2009-05-10
Title: Partial Least Squares data analysis methods
Description: Partial Least Squares (PLS) methods with emphasis on
structural equation models with latent variables.
plspm-0.1-1/plspm/R/nipals.default.R |only
plspm-0.1-1/plspm/R/plsca.default.R |only
plspm-0.1-1/plspm/R/plspm.default.R |only
plspm-0.1-1/plspm/R/plsreg1.default.R |only
plspm-0.1-1/plspm/R/plsreg2.default.R |only
plspm-0.1-2/plspm/DESCRIPTION | 9
plspm-0.1-2/plspm/R/nipals.R | 101 +++++
plspm-0.1-2/plspm/R/plot.plspm.groups.R |only
plspm-0.1-2/plspm/R/plsca.R | 98 ++++-
plspm-0.1-2/plspm/R/plspm.R | 547 +++++++++++++++++++++++++++-
plspm-0.1-2/plspm/R/plspm.groups.R |only
plspm-0.1-2/plspm/R/plsreg1.R | 175 ++++++++
plspm-0.1-2/plspm/R/plsreg2.R | 142 +++++++
plspm-0.1-2/plspm/R/print.plspm.groups.R |only
plspm-0.1-2/plspm/data/satisfaction.rda |binary
plspm-0.1-2/plspm/man/nipals.Rd | 2
plspm-0.1-2/plspm/man/plot.plspm.groups.Rd |only
plspm-0.1-2/plspm/man/plsca.Rd | 2
plspm-0.1-2/plspm/man/plspm-package.Rd | 10
plspm-0.1-2/plspm/man/plspm.Rd | 3
plspm-0.1-2/plspm/man/plspm.groups.Rd |only
plspm-0.1-2/plspm/man/plsreg1.Rd | 2
plspm-0.1-2/plspm/man/plsreg2.Rd | 2
plspm-0.1-2/plspm/man/print.plspm.groups.Rd |only
plspm-0.1-2/plspm/man/satisfaction.Rd | 2
25 files changed, 1070 insertions(+), 25 deletions(-)
Author: T. Hastie, R. Tibshirani, Balasubramanian Narasimhan, Gil Chu
Title: Pam: prediction analysis for microarrays
Description: Some functions for sample classification in microarrays
Diff between pamr versions 1.33 dated 2009-04-15 and 1.42.0 dated 2009-05-10
pamr-1.33/pamr/INDEX |only pamr-1.42.0/pamr/DESCRIPTION | 9 ++-- pamr-1.42.0/pamr/R/pamr.fdr.R | 3 - pamr-1.42.0/pamr/R/pamr.listgenes.R | 5 -- pamr-1.42.0/pamr/R/pamr.makeclasses.R | 1 pamr-1.42.0/pamr/R/pamr.plotstrata.R | 1 pamr-1.42.0/pamr/R/pamr.survfuns.R | 39 +++++++----------- pamr-1.42.0/pamr/R/pamr.xlfuns.R | 3 - pamr-1.42.0/pamr/inst |only pamr-1.42.0/pamr/man/pamr.confusion.survival.Rd | 13 +++--- pamr-1.42.0/pamr/man/pamr.cv.Rd | 8 +-- pamr-1.42.0/pamr/man/pamr.fdr.Rd | 3 - pamr-1.42.0/pamr/man/pamr.from.excel.Rd | 6 +- pamr-1.42.0/pamr/man/pamr.listgenes.Rd | 6 +- pamr-1.42.0/pamr/man/pamr.makeclasses.Rd | 4 + pamr-1.42.0/pamr/man/pamr.plotcen.Rd | 2 pamr-1.42.0/pamr/man/pamr.plotstrata.Rd | 6 +- pamr-1.42.0/pamr/man/pamr.plotsurvival.Rd | 4 - pamr-1.42.0/pamr/man/pamr.predict.Rd | 2 pamr-1.42.0/pamr/man/pamr.surv.to.class2.Rd | 6 +- pamr-1.42.0/pamr/man/pamr.test.errors.surv.compute.Rd | 6 +- pamr-1.42.0/pamr/man/pamr.to.excel.Rd | 2 pamr-1.42.0/pamr/man/pamr.train.Rd | 3 - pamr-1.42.0/pamr/src/cox_func.c |only 24 files changed, 63 insertions(+), 69 deletions(-)
Author: Katherine S. Pollard, Houston N. Gilbert, Yongchao Ge, Sandra
Taylor, Sandrine Dudoit
Title: Resampling-based multiple hypothesis testing
Description: Non-parametric bootstrap and permutation resampling-based
multiple testing procedures (including empirical Bayes methods)
for controlling the family-wise error rate (FWER), generalized
family-wise error rate (gFWER), tail probability of the
proportion of false positives (TPPFP), and false discovery rate
(FDR). Several choices of bootstrap-based null distribution
are implemented (centered, centered and scaled,
quantile-transformed). Single-step and step-wise methods are
available. Tests based on a variety of t- and F-statistics
(including t-statistics based on regression parameters from
linear and survival models as well as those based on
correlation parameters) are included. When probing hypotheses
with t-statistics, users may also select a potentially faster
null distribution which is multivariate normal with mean zero
and variance covariance matrix derived from the vector
influence function. Results are reported in terms of adjusted
p-values, confidence regions and test statistic cutoffs. The
procedures are directly applicable to identifying
differentially expressed genes in DNA microarray experiments.
Diff between multtest versions 1.23.3 dated 2009-02-15 and 2.0.0 dated 2009-05-10
DESCRIPTION | 42 ++++--- NAMESPACE | 17 ++ R/EBMTP.R |only R/EBzzz.R |only R/ICQTNullDist.R |only R/mt.basic.R | 59 +++++++++ R/nulldistn_c.R | 175 +++++++++++++++++++---------- R/statistics.R | 17 +- R/test.R | 175 ++++++++++++++++++++++++----- R/zzz.R | 311 ++++++++++++++++++++++++++++++++++++++++++---------- man/EBMTP-class.Rd |only man/EBMTP.Rd |only man/Hsets.Rd |only man/MTP-class.Rd | 60 +++++++--- man/MTP-methods.Rd | 66 ++++++++--- man/MTP.Rd | 131 ++++++++++++++++----- man/boot.null.Rd | 86 +++++++++++--- man/corr.null.Rd |only man/meanX.Rd | 24 +++- man/mt.internal.Rd | 13 ++ man/mt.rawp2adjp.Rd | 112 +++++++++++------- src/VScount.c |only 22 files changed, 989 insertions(+), 299 deletions(-)
Author: Patrick E. Meyer, Frederic Lafitte, Gianluca Bontempi
Title: Mutual Information Network Inference
Description: This package implements various algorithms for inferring
mutual information networks from data. All the algorithms
compute the mutual information matrix in order to infer a
network. Several mutual information estimators are implemented.
Diff between minet versions 1.1.7 dated 2009-01-05 and 1.4.0 dated 2009-05-10
CHANGES | 11 DESCRIPTION | 14 R/build.mim.R | 5 R/disc.R | 6 demo/demo.R | 2 inst/doc/minet.Rnw | 187 +--- inst/doc/minet.bib |only inst/doc/minet.pdf | 2324 +++++++++++++++++++++++++++-------------------------- man/build.mim.Rd | 14 man/disc.Rd | 7 man/minet.Rd | 4 man/mr.net.Rd | 27 man/syn.data.Rd | 5 man/vis.res.Rd | 7 src/disc.cpp | 2 15 files changed, 1316 insertions(+), 1299 deletions(-)
Author: Andrew Gelman
Diff between mi versions 0.07-1 dated 2009-04-29 and 0.07-2 dated 2009-05-10
Title: Missing Data Imputation and Model Checking
Description: Missing-data imputation and model checking
CHANGELOG | 5 ++++
DESCRIPTION | 8 +++----
NAMESPACE | 4 +--
R/write.mi.R |only
man/mi.Rd | 57 ++++++++++++++++++++++++++------------------------------
man/write.mi.Rd |only
6 files changed, 38 insertions(+), 36 deletions(-)
Author: Hao Wu, modified by Hyuna Yang and Keith Sheppard with ideas
from Gary Churchill, Katie Kerr and Xiangqin Cui.
Title: Tools for analyzing Micro Array experiments
Description: Analysis of N-dye Micro Array experiment using mixed model
effect. Containing anlysis of variance, permutation and
bootstrap, cluster and consensus tree.
Diff between maanova versions 1.13.3 dated 2009-02-13 and 1.14.0 dated 2009-05-10
DESCRIPTION | 16 inst/doc/maanova.pdf | 946 +++++++++++++++++++++++++-------------------------- 2 files changed, 482 insertions(+), 480 deletions(-)
Author: Trevor Hastie, Robert Tibshirani, Balasubramanian Narasimhan,
Gilbert Chu
Title: impute: Imputation for microarray data
Description: Imputation for microarray data (currently KNN only)
Diff between impute versions 1.0-5 dated 2006-04-18 and 1.16.0 dated 2009-05-10
impute-1.0-5/impute/INDEX |only impute-1.16.0/impute/DESCRIPTION | 12 + impute-1.16.0/impute/R/allknnimp.R | 66 ++++------ impute-1.16.0/impute/man/impute.knn.Rd | 60 ++++----- impute-1.16.0/impute/man/khanmiss.Rd | 30 ++-- impute-1.16.0/impute/src/knnimpute.f | 214 +++++++++++++++------------------ 6 files changed, 182 insertions(+), 200 deletions(-)
Author: Katherine S. Pollard, with Mark J. van der Laan
Diff between hopach versions 2.3.0 dated 2009-02-15 and 2.4.0 dated 2009-05-10
Title: Hierarchical Ordered Partitioning and Collapsing Hybrid (HOPACH)
Description: The HOPACH clustering algorithm builds a hierarchical tree
of clusters by recursively partitioning a data set, while
ordering and possibly collapsing clusters at each level. The
algorithm uses the Mean/Median Split Silhouette (MSS) criteria
to identify the level of the tree with maximally homogeneous
clusters. It also runs the tree down to produce a final ordered
list of the elements. The non-parametric bootstrap allows one
to estimate the probability that each element belongs to each
cluster (fuzzy clustering).
DESCRIPTION | 23 -
inst/doc/hopach.pdf | 688 ++++++++++++++++++++++++----------------------------
2 files changed, 343 insertions(+), 368 deletions(-)
Author: Dan Carr
Diff between hexbin versions 1.17.0 dated 2008-12-04 and 1.18.0 dated 2009-05-10
Title: Hexagonal Binning Routines
Description: Binning and plotting functions for hexagonal bins. Now
uses and relies on grid graphics and formal (S4) classes and
methods.
DESCRIPTION | 14
R/grid.hexagons.R | 1
inst/doc/hexagon_binning.pdf |66939 +++++++++++++++++++++----------------------
man/hexbinplot.Rd | 2
4 files changed, 33057 insertions(+), 33899 deletions(-)
Author: Gregory R. Warnes. Includes R source code and/or documentation
contributed by Ben Bolker and Thomas Lumley
Title: Various R programming tools
Description: Various R programming tools
Diff between gtools versions 2.5.0-1 dated 2009-02-19 and 2.6.1 dated 2009-05-10
ChangeLog | 987 +++++++++++++++++++++++++++++++++++++++++++++++ DESCRIPTION | 22 - NAMESPACE | 1 NEWS | 18 R/keywords.R |only R/newVersionAvailable.R |only inst |only man/addLast.Rd | 2 man/binsearch.Rd | 4 man/capture.Rd | 7 man/combinations.Rd | 4 man/defmacro.Rd | 4 man/dirichlet.Rd | 4 man/foldchange.Rd | 4 man/gtools-deprecated.Rd | 2 man/invalid.Rd | 4 man/keywords.Rd |only man/logit.Rd | 4 man/mixedsort.Rd | 4 man/oddeven.Rd | 4 man/permute.Rd | 4 man/quantcut.Rd | 6 man/running.Rd | 4 man/scat.Rd | 4 man/setTCPNoDelay.Rd | 4 man/smartbind.Rd | 2 src/Makevars.win | 2 27 files changed, 1055 insertions(+), 46 deletions(-)
Author: R. Gentleman, Elizabeth Whalen, W. Huber, S. Falcon
Title: graph: A package to handle graph data structures
Description: A package that implements some simple graph handling
capabilities.
Diff between graph versions 1.20.0 dated 2008-11-28 and 1.22.2 dated 2009-05-10
DESCRIPTION | 22 +- NAMESPACE | 20 +- R/AllGenerics.R | 2 R/attrData.R | 4 R/edgefunctions.R | 2 R/graphNEL.R | 68 +++----- R/methods-graph.R | 7 R/settings.R | 66 ++++++-- inst/doc/GraphClass.pdf | 334 ++++++++++++++++++++++--------------------- inst/doc/clusterGraph.pdf |binary inst/doc/graph.pdf |binary inst/doc/graphAttributes.pdf |binary man/combineNodes.Rd | 13 + man/graphNEL-class.Rd | 1 man/renderInfo-class.Rd | 127 +++++++++++++--- src/Makevars |only src/Makevars.win |only src/graph.c | 2 18 files changed, 398 insertions(+), 270 deletions(-)
Author: Beiying Ding
Title: Classification using generalized partial least squares
Description: Classification using generalized partial least squares for
two-group and multi-group (more than 2 group) classification.
Diff between gpls versions 1.3.1 dated 2006-04-15 and 1.16.0 dated 2009-05-10
gpls-1.16.0/gpls/DESCRIPTION | 18 +++++++++++------- gpls-1.16.0/gpls/NAMESPACE | 4 ++-- gpls-1.16.0/gpls/R/glpls1a.R | 6 ------ gpls-1.16.0/gpls/inst/doc/gpls.pdf |binary gpls-1.16.0/gpls/man/glpls1a.Rd | 9 +++++++-- gpls-1.16.0/gpls/man/glpls1a.cv.error.Rd | 9 +++++++-- gpls-1.16.0/gpls/man/glpls1a.logit.all.Rd | 9 +++++++-- gpls-1.16.0/gpls/man/glpls1a.mlogit.Rd | 9 +++++++-- gpls-1.16.0/gpls/man/glpls1a.mlogit.cv.error.Rd | 8 ++++++-- gpls-1.16.0/gpls/man/glpls1a.train.test.error.Rd | 9 +++++++-- gpls-1.16.0/gpls/man/gpls.Rd | 17 +++++++++++------ gpls-1.16.0/gpls/man/predict.gpls.Rd | 17 +++++++---------- gpls-1.3.1/gpls/INDEX |only 13 files changed, 72 insertions(+), 43 deletions(-)
Author: Gregory R. Warnes. Includes R source code and/or documentation
contributed by Ben Bolker, Thomas Lumley, and Randall C
Johnson. Contributions from Randall C. Johnson are Copyright
(2005) SAIC-Frederick, Inc. Funded by the Intramural Research
Program, of the NIH, National Cancer Institute, Center for
Cancer Research under NCI Contract NO1-CO-12400.
Title: Various R programming tools for model fitting
Description: Various R programming tools for model fitting
Diff between gmodels versions 2.14.1 dated 2007-12-08 and 2.15.0 dated 2009-05-10
ChangeLog | 61 +++++++++++++++++++++ DESCRIPTION | 27 ++++----- NAMESPACE | 6 +- NEWS | 14 ++++ R/ci.R | 12 ++-- R/est.lmer.R | 4 - R/est.mer.R |only R/estimable.R | 142 ++++++++++++++++++++++++++------------------------ R/fit.contrast.R | 32 +++++------ R/to.est.R | 12 ++-- inst |only man/CrossTable.Rd | 7 +- man/ci.Rd | 18 +++--- man/estimable.Rd | 16 ++--- man/fast.prcomp.Rd | 4 - man/fit.contrast.Rd | 14 ++-- man/glh.test.Rd | 8 +- man/make.contrasts.Rd | 4 - test |only 19 files changed, 230 insertions(+), 151 deletions(-)
Author: Holger Froehlich
Diff between gene2pathway versions 1.0.5.4 dated 2009-04-22 and 1.2.0 dated 2009-05-10
Title: Prediction of KEGG pathway membership for individual genes based
on InterPro domain signatures
Description: The package takes a list of genes and predicts to which
KEGG pathway each gene maps to. This is done by looking at the
InterPro domains of each gene. Each prediction is assigned a
confidence score. The package also allows to predict connected
component membership of genes within signaling pathways.
Separate models for each organism supported by KEGG can be
trained.
DESCRIPTION | 8 ++++----
R/gene2pathway.signaltrans.R | 9 ++++-----
inst/doc/gene2pathway.pdf |binary
3 files changed, 8 insertions(+), 9 deletions(-)
Author: Gregory R. Warnes
Diff between fork versions 1.2.1 dated 2007-11-27 and 1.2.2 dated 2009-05-10
Title: R functions for handling multiple processes.
Description: These functions provides simple wrappers around the Unix
process management API calls: fork, signal, wait, waitpid,
kill, and _exit. This enables construction of programs that
utilize and mange multiple concurrent processes. Commercial
support for this package available from Random Technologies,
LLC
ChangeLog | 167 +++++++++++++++++++++++++++++++++++++-----------------------
DESCRIPTION | 26 +++++----
inst |only
man/wait.Rd | 9 +--
4 files changed, 125 insertions(+), 77 deletions(-)
Author: Chris Fraley, Adrian E. Raftery, J. McLean Sloughter, Tilmann
Gneiting, University of Washington With contributions from
Bobby Yuen and Michael Polokowski
Title: Probabilistic Forecasting using Ensembles and Bayesian Model
Averaging
Description: Bayesian Model Averaging to create probabilistic forecasts
from ensemble forecasts and weather observations.
Diff between ensembleBMA versions 4.2 dated 2009-04-01 and 4.2.1 dated 2009-05-10
CHANGELOG | 4 +++- DESCRIPTION | 8 ++++---- R/cdf.ensembleBMAgamma.R | 2 +- R/ensembleBMAgamma.R | 2 +- R/ensembleBMAgamma0.R | 2 +- R/ensembleBMAnormal.R | 2 +- R/ensembleData.R | 7 ++++--- R/trainingData.R | 3 +-- 8 files changed, 16 insertions(+), 14 deletions(-)
Author: John Fox
Diff between effects versions 2.0-6 dated 2009-04-23 and 2.0-7 dated 2009-05-10
Title: Effect Displays for Linear, Generalized Linear,
Multinomial-Logit, and Proportional-Odds Logit Models
Description: Graphical and tabular effect displays, e.g., of
interactions, for linear generalized linear, multinomial-logit,
and proportional-odds logit models.
DESCRIPTION | 10 +++++-----
R/utilities.R | 6 ++++--
inst/CHANGES | 4 ++++
man/effects-package.Rd | 4 ++--
4 files changed, 15 insertions(+), 9 deletions(-)
Author: Joseph Richards
Diff between diffusionMap versions 0.0-1 dated 2009-05-08 and 0.0-2 dated 2009-05-10
Title: Diffusion map
Description: Implements diffusion map method of data parametrization,
including creation and visualization of diffusion map and
course-graining using diffusion K-means.
DESCRIPTION | 6 +++---
man/diffusionKmeans.Rd | 2 +-
2 files changed, 4 insertions(+), 4 deletions(-)
Author: Michael Malecki
Title: apsrtable model-output formatter for social science
Description: Formats latex tables from one or more model objects
side-by-side with standard errors below, not unlike tables
found in such journals as the American Political Science
Review.
Diff between apsrtable versions 0.7-2 dated 2009-02-26 and 0.7-3 dated 2009-05-10
DESCRIPTION | 17 +++++-- NAMESPACE | 5 +- R/apsrtable.R | 104 ++++++++++++++++++++++++++++++++++++------------ inst |only man/apsrtable.Rd | 12 ++++- man/apsrtableSummary.Rd |only man/modelInfo.Rd | 2 7 files changed, 105 insertions(+), 35 deletions(-)
Author: Nusrat Rabbee
Diff between RLMM versions 0.7 dated 2005-09-05 and 1.6.0 dated 2009-05-10
Title: A Genotype Calling Algorithm for Affymetrix SNP Arrays
Description: A classification algorithm, based on a multi-chip,
multi-SNP approach for Affymetrix SNP arrays. Using a large
training sample where the genotype labels are known, this
aglorithm will obtain more accurate classification results on
new data. RLMM is based on a robust, linear model and uses the
Mahalanobis distance for classification. The chip-to-chip
non-biological variation is removed through normalization. This
model-based algorithm captures the similarities across genotype
groups and probes, as well as thousands other SNPs for accurate
classification. NOTE: 100K-Xba only at for now.
RLMM-0.7/RLMM/inst/Xba.CQV |only
RLMM-0.7/RLMM/inst/Xba.regions |only
RLMM-0.7/RLMM/inst/doc/RLMM.tex |only
RLMM-1.6.0/RLMM/DESCRIPTION | 30
RLMM-1.6.0/RLMM/R/create_Thetafile.R | 289 ++-
RLMM-1.6.0/RLMM/inst/doc/RLMM.Rnw | 242 ++-
RLMM-1.6.0/RLMM/inst/doc/RLMM.pdf | 2536 ++++++++++++++++++++++++-----------
RLMM-1.6.0/RLMM/inst/doc/Xba.rlmm |only
RLMM-1.6.0/RLMM/inst/doc/Xba.theta |only
RLMM-1.6.0/RLMM/inst/doc/snps.lst |only
10 files changed, 2103 insertions(+), 994 deletions(-)
Author: Vince Carey
Diff between RBGL versions 1.18.0 dated 2008-11-28 and 1.20.0 dated 2009-05-10
Title: An interface to the BOOST graph library
Description: A fairly extensive and comprehensive interface to the
graph algorithms contained in the BOOST library.
DESCRIPTION | 12
inst/doc/RBGL.pdf | 2729 +++++++++++++++++++++++++-------------------------
man/clusteringCoef.Rd | 11
man/coloring.Rd | 2
man/kCores.Rd | 2
man/layout.Rd | 2
man/transitivity.Rd | 7
7 files changed, 1401 insertions(+), 1364 deletions(-)
Author: David Rocke, Geun Cheol Lee, and John Tillinghast.
Title: LMGene Software for Date Transformation and Identification of
Differentially Expressed Genes in Gene Expression Arrays
Description: LMGene package for analysis of microarray data using a
linear model and glog data transformation in the R statistical
package.
Diff between LMGene versions 1.9.1 dated 2007-12-15 and 1.14.0 dated 2009-05-10
LMGene-1.14.0/LMGene/DESCRIPTION | 32 LMGene-1.14.0/LMGene/R/GetLMObj.R | 15 LMGene-1.14.0/LMGene/R/LMGene.R |only LMGene-1.14.0/LMGene/R/genediff.R | 14 LMGene-1.14.0/LMGene/R/jggrad2.R | 2 LMGene-1.14.0/LMGene/R/lnormeS.R | 20 LMGene-1.14.0/LMGene/R/mlm2lm.R | 2 LMGene-1.14.0/LMGene/R/msa.R | 2 LMGene-1.14.0/LMGene/R/msecalc.R | 19 LMGene-1.14.0/LMGene/R/msecalcmult.R | 35 LMGene-1.14.0/LMGene/R/neweS.R | 18 LMGene-1.14.0/LMGene/R/norm.R | 2 LMGene-1.14.0/LMGene/R/psmeans.R | 38 LMGene-1.14.0/LMGene/R/pvadjust.R | 2 LMGene-1.14.0/LMGene/R/rowaov.R | 26 LMGene-1.14.0/LMGene/R/tranest.R | 15 LMGene-1.14.0/LMGene/R/tranest2.R | 31 LMGene-1.14.0/LMGene/R/tranestmult.R | 56 LMGene-1.14.0/LMGene/R/transeS.R | 3 LMGene-1.14.0/LMGene/data/sample.eS.RData |binary LMGene-1.14.0/LMGene/inst/doc/LMGene.Rnw | 515 LMGene-1.14.0/LMGene/inst/doc/LMGene.pdf |binary LMGene-1.14.0/LMGene/inst/doc/Rplots.ps |43884 +++++++++++++++--------------- LMGene-1.14.0/LMGene/man/GetLMObj.Rd | 63 LMGene-1.14.0/LMGene/man/LMGene.Rd | 49 LMGene-1.14.0/LMGene/man/genediff.Rd | 54 LMGene-1.14.0/LMGene/man/lnormeS.Rd | 70 LMGene-1.14.0/LMGene/man/mlm2lm.Rd | 43 LMGene-1.14.0/LMGene/man/msa.Rd | 36 LMGene-1.14.0/LMGene/man/msecalc.Rd | 44 LMGene-1.14.0/LMGene/man/msecalcmult.Rd | 45 LMGene-1.14.0/LMGene/man/neweS.Rd | 29 LMGene-1.14.0/LMGene/man/psmeans.Rd | 84 LMGene-1.14.0/LMGene/man/rowaov.Rd | 46 LMGene-1.14.0/LMGene/man/rowlist.Rd | 51 LMGene-1.14.0/LMGene/man/sample.eS.Rd | 13 LMGene-1.14.0/LMGene/man/tranest.Rd | 54 LMGene-1.14.0/LMGene/man/tranest2.Rd | 54 LMGene-1.14.0/LMGene/man/tranestmult.Rd | 56 LMGene-1.14.0/LMGene/man/transeS.Rd | 72 LMGene-1.9.1/LMGene/R/LMGene.r |only 41 files changed, 22735 insertions(+), 22859 deletions(-)
Author: R. Gentleman and Alain Vandal .
Title: NPMLE for Censored and Truncated Data
Description: Many functions for computing the NPMLE for censored and
truncated data.
Diff between Icens versions 1.2.0 dated 2005-11-04 and 1.16.0 dated 2009-05-10
Icens-1.16.0/Icens/DESCRIPTION | 12 ++++++++---- Icens-1.16.0/Icens/NAMESPACE |only Icens-1.16.0/Icens/man/icsurv.Rd | 25 ++++++++++++++----------- Icens-1.2.0/Icens/INDEX |only 4 files changed, 22 insertions(+), 15 deletions(-)
Author: Dongxiao Zhu and Youjuan Li
Title: Multivariate Correlation Estimator and Statistical Inference
Procedures.
Description: Multivariate correlation estimation and statistical
inference. See package vignette.
Diff between CORREP versions 1.0.1 dated 2007-03-31 and 1.10.0 dated 2009-05-10
CORREP-1.0.1/CORREP/R/cor.LRtest1.R |only CORREP-1.0.1/CORREP/R/cor.LRtest2.R |only CORREP-1.0.1/CORREP/inst/doc/CORREP-002.eps |only CORREP-1.0.1/CORREP/inst/doc/CORREP.aux |only CORREP-1.0.1/CORREP/inst/doc/CORREP.log |only CORREP-1.0.1/CORREP/inst/doc/CORREP.rnw |only CORREP-1.0.1/CORREP/inst/doc/CORREP.tex |only CORREP-1.0.1/CORREP/inst/doc/Rplots.ps |only CORREP-1.0.1/CORREP/inst/doc/gal_all.rda |only CORREP-1.0.1/CORREP/inst/doc/true.member.rda |only CORREP-1.0.1/CORREP/man/cor.LRtest1.Rd |only CORREP-1.0.1/CORREP/man/cor.LRtest2.Rd |only CORREP-1.10.0/CORREP/DESCRIPTION | 27 +++++++++++++++++---------- CORREP-1.10.0/CORREP/R/cor.LRtest.R |only CORREP-1.10.0/CORREP/R/cor.LRtest.std.R |only CORREP-1.10.0/CORREP/inst/doc/CORREP.Rnw |only CORREP-1.10.0/CORREP/inst/doc/CORREP.pdf |binary CORREP-1.10.0/CORREP/man/CORREP-package.Rd | 11 ++++++++--- CORREP-1.10.0/CORREP/man/cor.LRtest.Rd |only CORREP-1.10.0/CORREP/man/cor.LRtest.std.Rd |only CORREP-1.10.0/CORREP/man/cor.balance.Rd | 2 +- CORREP-1.10.0/CORREP/man/cor.bootci.Rd | 10 +++++----- CORREP-1.10.0/CORREP/man/cor.unbalance.Rd | 2 +- CORREP-1.10.0/CORREP/man/gal_all.Rd | 6 +++--- CORREP-1.10.0/CORREP/man/permutest.Rd | 4 ++-- 25 files changed, 37 insertions(+), 25 deletions(-)
Author: David Meyer, Achim Zeileis, Kurt Hornik
Title: Visualizing Categorical Data
Description: Visualization techniques, data sets, summary and inference
procedures aimed particularly at categorical data. Special
emphasis is given to highly extensible grid graphics. The
package was inspired by the book "Visualizing Categorical Data"
by Michael Friendly.
Diff between vcd versions 1.2-3 dated 2009-03-09 and 1.2-4 dated 2009-05-09
DESCRIPTION | 8 NEWS | 8 R/labeling.R | 20 - R/ternaryplot.R | 2 inst/NEWS | 8 inst/doc/residual-shadings.pdf | 630 ++++++++++++++++++++--------------------- inst/doc/strucplot.pdf |binary 7 files changed, 348 insertions(+), 328 deletions(-)
Author: Gabor Csardi
Diff between igraph versions 0.5.2 dated 2009-04-14 and 0.5.2-2 dated 2009-05-08
Title: Routines for simple graphs, network analysis.
Description: Routines for simple graphs and network analysis. igraph
can handle large graphs very well and provides functions for
generating random and regular graphs, graph visualization,
centrality indices and much more.
DESCRIPTION | 6 +++---
configure.win | 10 +++++-----
2 files changed, 8 insertions(+), 8 deletions(-)
Author: Jae H. Kim
Title: Variance Ratio tests and spectral shape tests for Weak-form
Market Efficiency
Description: A collection of variance ratio and spectral shapte tests
Diff between vrtest versions 0.91 dated 2009-04-14 and 0.93 dated 2009-05-08
vrtest-0.91/vrtest/R/wild.R |only vrtest-0.93/vrtest/DESCRIPTION | 8 ++-- vrtest-0.93/vrtest/R/ABEL1Q.R | 2 - vrtest-0.93/vrtest/R/AR1.R | 2 - vrtest-0.93/vrtest/R/Adjust.thin.R | 2 - vrtest-0.93/vrtest/R/Auto.VR.R | 8 +--- vrtest-0.93/vrtest/R/AutoBoot.test.R | 27 ++++---------- vrtest-0.93/vrtest/R/Ave.Ex.R | 2 - vrtest-0.93/vrtest/R/Boot.test.R | 61 ++++++++++++-------------------- vrtest-0.93/vrtest/R/Chen.Deo.R | 2 - vrtest-0.93/vrtest/R/Chow.Denning.R | 2 - vrtest-0.93/vrtest/R/FastLMCD.R |only vrtest-0.93/vrtest/R/FastLM_stat.R |only vrtest-0.93/vrtest/R/FastVR.R |only vrtest-0.93/vrtest/R/IACM.R | 2 - vrtest-0.93/vrtest/R/ISIMP.R | 2 - vrtest-0.93/vrtest/R/JWright.crit.R | 2 - vrtest-0.93/vrtest/R/Joint.Wright.R | 2 - vrtest-0.93/vrtest/R/LMCD.R | 2 - vrtest-0.93/vrtest/R/LM_stat.R | 30 +++------------ vrtest-0.93/vrtest/R/Lo.Mac.R | 7 ++- vrtest-0.93/vrtest/R/Mammen.R | 2 - vrtest-0.93/vrtest/R/Rademacher.R | 2 - vrtest-0.93/vrtest/R/Spec.shape.R | 2 - vrtest-0.93/vrtest/R/Subsample.test.R | 6 ++- vrtest-0.93/vrtest/R/VR.minus.1.R | 4 +- vrtest-0.93/vrtest/R/VR.plot.R | 7 ++- vrtest-0.93/vrtest/R/WK_stat1.R | 2 - vrtest-0.93/vrtest/R/WK_stat2.R | 2 - vrtest-0.93/vrtest/R/Wald.R | 2 - vrtest-0.93/vrtest/R/Wald1.R | 2 - vrtest-0.93/vrtest/R/Wright.R | 7 ++- vrtest-0.93/vrtest/R/Wright.crit.R | 2 - vrtest-0.93/vrtest/R/Wright_stat.R | 2 - vrtest-0.93/vrtest/R/covmat.R | 2 - vrtest-0.93/vrtest/R/kfunc.R | 2 - vrtest-0.93/vrtest/R/stat.R | 2 - vrtest-0.93/vrtest/R/stat.plot.R | 2 - vrtest-0.93/vrtest/man/AutoBoot.test.Rd | 5 +- vrtest-0.93/vrtest/man/Boot.test.Rd | 4 +- vrtest-0.93/vrtest/man/Lo.Mac.Rd | 4 -- 41 files changed, 96 insertions(+), 130 deletions(-)
Author: Matthias Templ, Karel Hron, Peter Filzmoser
Title: Robust Estimation for Compositional Data.
Description: The package includes methods for imputation of
compositional data including robust methods, (robust) outlier
detection for compositional data, (robust) principal component
analysis for compositional data, (robust) factor analysis for
compositional data and (robust) Anderson-Darling normality
tests for compositional data.
Diff between robCompositions versions 1.2 dated 2009-03-06 and 1.2.2 dated 2009-05-08
robCompositions-1.2.2/robCompositions/DESCRIPTION | 34 robCompositions-1.2.2/robCompositions/NAMESPACE | 9 robCompositions-1.2.2/robCompositions/R/aDist.R | 36 robCompositions-1.2.2/robCompositions/R/adtest.R |only robCompositions-1.2.2/robCompositions/R/adtestWrapper.R |only robCompositions-1.2.2/robCompositions/R/alrEM.R | 102 robCompositions-1.2.2/robCompositions/R/drawMahal.R |only robCompositions-1.2.2/robCompositions/R/factanal.fit.principal1.R |only robCompositions-1.2.2/robCompositions/R/impCoda.R | 423 - robCompositions-1.2.2/robCompositions/R/impKNNa.R | 16 robCompositions-1.2.2/robCompositions/R/outCoDa.R |only robCompositions-1.2.2/robCompositions/R/pcaCoDa.R |only robCompositions-1.2.2/robCompositions/R/pfa.R |only robCompositions-1.2.2/robCompositions/R/plot.outCoDa.R |only robCompositions-1.2.2/robCompositions/R/plot.pcaCoDa.R |only robCompositions-1.2.2/robCompositions/R/print.adtestWrapper.R |only robCompositions-1.2.2/robCompositions/R/print.outCoDa.R |only robCompositions-1.2.2/robCompositions/R/print.pcaCoDa.R |only robCompositions-1.2.2/robCompositions/R/summary.adtestWrapper.R |only robCompositions-1.2.2/robCompositions/R/zzz.R | 16 robCompositions-1.2.2/robCompositions/inst/doc/.project |only robCompositions-1.2.2/robCompositions/inst/doc/Rplots.pdf | 4 robCompositions-1.2.2/robCompositions/inst/doc/hs_err_pid1448.log |only robCompositions-1.2.2/robCompositions/inst/doc/hs_err_pid2256.log |only robCompositions-1.2.2/robCompositions/inst/doc/hs_err_pid2848.log |only robCompositions-1.2.2/robCompositions/inst/doc/hs_err_pid3600.log |only robCompositions-1.2.2/robCompositions/inst/doc/imputation-plot-acomp.eps | 1137 ++-- robCompositions-1.2.2/robCompositions/inst/doc/imputation-plot-acomp.pdf | 50 robCompositions-1.2.2/robCompositions/inst/doc/imputation.Rnw | 1 robCompositions-1.2.2/robCompositions/inst/doc/imputation.pdf | 2314 ++++------ robCompositions-1.2.2/robCompositions/inst/doc/normalityAD.aux |only robCompositions-1.2.2/robCompositions/inst/doc/normalityAD.bbl |only robCompositions-1.2.2/robCompositions/inst/doc/normalityAD.blg |only robCompositions-1.2.2/robCompositions/inst/doc/normalityAD.log |only robCompositions-1.2.2/robCompositions/inst/doc/normalityAD.out |only robCompositions-1.2.2/robCompositions/inst/doc/refPCSn.log |only robCompositions-1.2.2/robCompositions/inst/texput.log |only robCompositions-1.2.2/robCompositions/man/aDist.Rd | 25 robCompositions-1.2.2/robCompositions/man/adtest.Rd |only robCompositions-1.2.2/robCompositions/man/adtestWrapper.Rd |only robCompositions-1.2.2/robCompositions/man/alrEM.Rd | 3 robCompositions-1.2.2/robCompositions/man/ilr.Rd | 2 robCompositions-1.2.2/robCompositions/man/impCoda.Rd | 16 robCompositions-1.2.2/robCompositions/man/impKNNa.Rd | 3 robCompositions-1.2.2/robCompositions/man/outCoDa.Rd |only robCompositions-1.2.2/robCompositions/man/pcaCoDa.Rd |only robCompositions-1.2.2/robCompositions/man/pfa.Rd |only robCompositions-1.2.2/robCompositions/man/plot.outCoDa.Rd |only robCompositions-1.2.2/robCompositions/man/plot.pcaCoDa.Rd |only robCompositions-1.2.2/robCompositions/man/print.adtestWrapper.Rd |only robCompositions-1.2.2/robCompositions/man/print.outCoDa.Rd |only robCompositions-1.2.2/robCompositions/man/print.pcaCoDa.Rd |only robCompositions-1.2.2/robCompositions/man/summary.adtestWrapper.Rd |only robCompositions-1.2.2/robCompositions/src |only robCompositions-1.2.2/robCompositions/tests |only robCompositions-1.2/robCompositions/inst/doc/imputation.log |only robCompositions-1.2/robCompositions/inst/doc/imputation.tex |only 57 files changed, 2087 insertions(+), 2104 deletions(-)
More information about robCompositions at CRAN
Permanent link
Author: Max Kuhn. Contributions from Jed Wing, Steve Weston, Andre
Williams and Chris Keefer
Title: Classification and Regression Training
Description: Misc functions for training and plotting classification
and regression models
Diff between caret versions 4.11 dated 2009-04-29 and 4.12 dated 2009-05-08
caret-4.11/caret/inst/doc/caretMisc.tex |only caret-4.11/caret/inst/doc/caretSelection.tex |only caret-4.11/caret/inst/doc/caretTrain.tex |only caret-4.11/caret/inst/doc/caretVarImp.tex |only caret-4.12/caret/DESCRIPTION | 10 caret-4.12/caret/R/confusionMatrix.R | 2 caret-4.12/caret/R/makeCubistFiles.R |only caret-4.12/caret/R/print.confusionMatrix.R | 2 caret-4.12/caret/inst/CHANGES | 7 caret-4.12/caret/inst/doc/caretMisc.pdf | 756 +++++++++++++-------------- caret-4.12/caret/inst/doc/caretSelection.pdf | 660 +++++++++++------------ caret-4.12/caret/inst/doc/caretTrain.Rnw | 2 caret-4.12/caret/inst/doc/caretTrain.pdf |binary caret-4.12/caret/inst/doc/caretVarImp.pdf |binary 14 files changed, 720 insertions(+), 719 deletions(-)
Author: Jake Bowers
Diff between RItools versions 0.1-5 dated 2009-01-22 and 0.1-6 dated 2009-05-08
Title: Randomization inference tools
Description: Tools for randomization inference.
ChangeLog | 2 ++
DESCRIPTION | 16 +++++++++++-----
inst/CITATION | 14 ++++++++------
3 files changed, 21 insertions(+), 11 deletions(-)
Author: Renan Cortes
Diff between RcmdrPlugin.qcc versions 1.0-4 dated 2009-05-06 and 1.0-5 dated 2009-05-08
More information about RcmdrPlugin.qcc at CRAN
Title: Rcmdr qcc Plug-In
Description: This package provides an Rcmdr "plug-in" based on the qcc
package, and it provides an integration between the user and
the tools of SPC.
DESCRIPTION | 6 +++---
R/RcmdrPlugin.qcc.r | 20 ++++++++++----------
man/RcmdrPlugin.qcc-package.Rd | 2 +-
3 files changed, 14 insertions(+), 14 deletions(-)
Permanent link
Author: Ulrike Groemping
Title: Fractional Factorial designs with 2-level factors
Description: This package creates regular and non-regular Fractional
Factorial designs. Furthermore, analysis tools for Fractional
Factorial designs with 2-level factors are offered (main
effects and interaction plots for all factors simultaneously,
cube plot for looking at the simultaneous effects of three
factors, full or half normal plot, alias structure in a more
readable format than with the built-in function alias). The
package is currently subject to intensive development. While
much of the intended functionality is already available, some
changes and improvements are still to be expected. Suggestions
are welcome.
Diff between FrF2 versions 0.92-1 dated 2009-05-04 and 0.92-2 dated 2009-05-07
DESCRIPTION | 14 ++++++++------ R/blockpick.big.R | 4 ++-- R/fac.design.R | 8 +++++++- R/pb.R | 8 ++++++-- inst/NEWS | 15 +++++++++++++++ man/FrF2.Rd | 6 ++++-- man/class-design.Rd | 3 ++- man/pb.Rd | 5 +++-- 8 files changed, 47 insertions(+), 16 deletions(-)
Author: Øyvind Langsrud and Bjørn-Helge Mevik
Title: Fifty-fifty MANOVA
Description: This package performs general linear modeling with
multiple responses (MANCOVA). An overall p-value for each
model term is calculated by the 50-50 MANOVA method, which
handles collinear responses. Rotation testing is used to
compute adjusted single response p-values according to
familywise error rates and false discovery rates.
Diff between ffmanova versions 0.1-1.1 dated 2009-02-23 and 0.1-1.2 dated 2009-05-07
DESCRIPTION | 19 +++++----- man/manova5050.Rd | 100 +++++++++++++++++++++++++++--------------------------- 2 files changed, 61 insertions(+), 58 deletions(-)
Author: Sebastian Kaiser, Rodrigo Santamaria, Roberto Theron, Luis
Quintales and Friedrich Leisch.
Title: BiCluster Algorithms
Description: The main function biclust provides several algorithms to
find biclusters in two-dimensional data: Cheng and Church,
Spectral, Plaid Model, Xmotifs and Bimax. In addition, the
package provides methods for data preprocessing (normalization
and discretisation), visualisation, and validation of bicluster
solutions.
Diff between biclust versions 0.7.2 dated 2009-04-28 and 0.8.1 dated 2009-05-07
DESCRIPTION | 12 ++++++------ NAMESPACE | 1 + NEWS | 7 ++++--- R/bubbleplot.r | 2 +- R/clustmember.r | 2 -- R/drawHeatmap.r | 2 +- R/drawHeatmap2.r | 2 +- man/clustmember.rd | 1 - 8 files changed, 14 insertions(+), 15 deletions(-)
Author: Gavin L. Simpson, Jari Oksanen
Title: Analogue and weighted averaging methods for palaeoecology
Description: Fits Modern Analogue Technique and Weighted Averaging
transfer function models for prediction of environmental data
from species data, and related methods used in palaeoecology.
Diff between analogue versions 0.6-6 dated 2009-03-10 and 0.6-8 dated 2009-05-07
DESCRIPTION | 17 ++++++++++------- R/as.data.frame.optima.R |only R/densityplot.residLen.R |only R/distance.R | 2 +- R/getK.R | 22 +++++++++++++++++++++- R/hist.residLen.R |only R/histogram.residLen.R |only R/plot.residLen.R |only R/predict.mat.R | 11 ++++++----- R/print.residLen.R |only R/residLen.R |only R/stdError.R |only inst/CITATION | 8 +++++--- inst/ChangeLog | 39 +++++++++++++++++++++++++++++++++++++++ man/densityplot.residLen.Rd |only man/getK.Rd | 6 +++++- man/hist.residLen.Rd |only man/histogram.residLen.Rd |only man/optima.Rd | 20 +++++++++++++------- man/plot.residLen.Rd |only man/predict.mat.Rd | 8 ++++++++ man/residLen.Rd |only man/stdError.Rd |only 23 files changed, 108 insertions(+), 25 deletions(-)
Author: Nicolas Turenne
Diff between svcR versions 1.4.1 dated 2008-07-14 and 1.4.2 dated 2009-05-06
Title: svcR package
Description: svcR implements a support vector machine technique for
clustering It includes choice between three kinds of kernel.
Original cluster labeling and export of clusters. Format of
data require 3 files: matrix, attributes, variables.
svcR-1.4.1/svcR/Makedeps |only
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svcR-1.4.2/svcR/NAMESPACE | 41
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svcR-1.4.2/svcR/R/svcR.R | 2905 +++-----------------------
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svcR-1.4.2/svcR/man/kernelMatrix-class.Rd |only
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svcR-1.4.2/svcR/src/svcR.c | 117 -
svcR-1.4.2/svcR/src/svcR.h | 1
27 files changed, 574 insertions(+), 2516 deletions(-)
Author: Christian Hennig
Diff between prabclus versions 2.1-2 dated 2008-09-21 and 2.1-3 dated 2009-05-06
Title: Functions for clustering of presence-absence and abundance data
Description: Distance-based parametric bootstrap tests for clustering,
mainly intended for presence-absence data and abundance data
(clustering of species distribution ranges). Jaccard,
Kulczynski, quantitative Kulczynski and geco distance measures,
clustering of presence-absence and abundance data, and nearest
neighbor based noise detection (R port of Byers and Raftery's
(1998) "NNclean"). Main functions are prabtest, abundtest (for
testing), prabclust (for clustering), prabinit (for preparing
the data) and NNclean (for noise detection). The help-pages for
prabtest, abundtest and prabclust contain simple standard
executions. Note that the use of the package mclust (called by
function prabclust) is protected by a special license, see
http://www.stat.washington.edu/mclust/license.txt, particularly
point 6.
DESCRIPTION | 40 +++++++++++++++++++++-------------------
DESCRIPTIONbackup |only
R/NNclean.R | 20 +++++++++++++++-----
man/abundtest.Rd | 2 +-
man/autoconst.Rd | 2 +-
man/conregmat.Rd | 5 -----
man/homogen.test.Rd | 2 --
man/incmatrix.Rd | 2 --
man/jaccard.Rd | 2 --
man/kulczynski.Rd | 2 --
man/prabtest.Rd | 2 +-
man/siskiyou.Rd | 3 ++-
tests/examples.R | 16 ++++++++--------
13 files changed, 49 insertions(+), 49 deletions(-)
Author: Christian Hennig
Diff between fpc versions 1.2-3 dated 2007-06-14 and 1.2-4 dated 2009-05-06
Title: Fixed point clusters, clusterwise regression and discriminant
plots
Description: Fuzzy and crisp fixed point cluster analysis based on
Mahalanobis distance and linear regression fixed point
clusters. Semi-explorative, semi-model-based clustering
methods, operating on n*p data, do not need prespecification of
number of clusters, produce overlapping clusters. Symmetric and
asymmetric discriminant projections separate groups optimally,
used to visualize the separation of groupings, visual cluster
validation. Clusterwise linear regression by normal mixture
modeling. Cluster validation statistics for distance based
clustering including corrected Rand index. Clusterwise cluster
stability assessment. DBSCAN clustering. Interface functions
for many clustering methods implemented in R. Note that the use
of the package mclust (called by function prabclust) is
protected by a special license, see
http://www.stat.washington.edu/mclust/license.txt, particularly
point 6.
DESCRIPTION | 43 ++---
R/clusterboot.R | 438 ++++++++++++++++++++++++++++++++++-----------------
R/discrproj.R | 129 +++++++++++----
R/fixreg.R | 4
R/rFace.R | 199 +++++++++++++----------
man/cluster.stats.Rd | 39 +++-
man/clusterboot.Rd | 36 ++--
man/discrproj.Rd | 11 +
man/kmeansCBI.Rd | 66 +++----
man/plotcluster.Rd | 37 +++-
10 files changed, 662 insertions(+), 340 deletions(-)
Author: P. Neytchev, P. Filzmoser, R. Patnaik, A. Eisl and R. Boubela
Title: Trimmed Maximum Likelihood Estimation
Description: TLE implements a general framework for robust fitting of
finite mixture models. Parameter estimation is performed using
the EM algorithm.
Diff between tlemix versions 0.0.4 dated 2009-03-04 and 0.0.5 dated 2009-05-06
tlemix-0.0.4/tlemix/R/classes.R |only tlemix-0.0.5/tlemix/DESCRIPTION | 16 tlemix-0.0.5/tlemix/R/FLXglm.Estimate.R | 2 tlemix-0.0.5/tlemix/R/FLXmclust.Estimate.R | 2 tlemix-0.0.5/tlemix/inst/doc/references.bib | 48 tlemix-0.0.5/tlemix/inst/doc/tlemix-intro.Rnw | 98 - tlemix-0.0.5/tlemix/inst/doc/tlemix-intro.pdf | 2089 ++++++++++++++------------ tlemix-0.0.5/tlemix/man/FLXmclust.Estimate.Rd | 2 tlemix-0.0.5/tlemix/man/McLachlan150.Rd | 2 tlemix-0.0.5/tlemix/man/dPois.Rd | 2 tlemix-0.0.5/tlemix/man/flexmix.Estimate.Rd | 2 tlemix-0.0.5/tlemix/man/gaussData.Rd | 2 12 files changed, 1265 insertions(+), 1000 deletions(-)
Author: Theresa Scharl, Ingo Voglhuber, Friedrich Leisch
Title: Graphical Cluster Explorer
Description: Visualize cluster results and investigate additional
properties of clusters using interactive neighbourhood graphs.
By clicking on the node representing the cluster, information
about the cluster is provided using additional graphics or
summary statistics. For microarray data, tables with links to
genetic databases like gene ontolgy can be created for each
cluster.
Diff between gcExplorer versions 0.9-0 dated 2009-01-13 and 0.9-1 dated 2009-05-06
DESCRIPTION | 19 ++++++++++-------- NAMESPACE | 19 +++++++++++++++--- R/Group2Cluster.R |only R/clusterPlot.R | 26 ++++++++++++++++++++---- R/comp_test.R |only R/edgeTest.R |only R/gcExplorer.R | 15 +++++++------- R/gcModify.R |only R/gcProfile.R | 51 +++++++++++++++++++++++++++---------------------- R/go.details.R | 6 +++-- R/legend.size.R | 8 ++++--- R/write.htmltable.R | 2 - data/comp19.rda |only data/oxygen.rda |only data/ps19.rda |only data/sigma.rda |only inst |only man/Group2Cluster.Rd |only man/clnorm.Rd | 10 ++++----- man/clusterPlot.Rd | 9 +++++--- man/comp_test.Rd |only man/edgeTest.Rd |only man/fitsod.Rd | 4 +-- man/gcExplorer.Rd | 25 ++++++++++++++---------- man/gcModify.Rd |only man/gcOffline.Rd | 6 ++--- man/gcProfile.Rd | 2 - man/gcTable.Rd | 6 ++--- man/go.details.Rd | 13 ++++++------ man/jkdist.Rd | 2 - man/node.tight.Rd | 6 ++--- man/oxygen.Rd |only man/pattern.Rd | 2 - man/ps19.Rd |only man/sigma.Rd |only man/write.htmltable.Rd | 4 +-- 36 files changed, 144 insertions(+), 91 deletions(-)
Author: Carsten F. Dormann and Bernd Gruber, with additional code from
Jochen Fruend, also based on C-code developed by Nils Bluethgen
and by Miguel Rodriguez-Girones.
Title: Visualising bipartite networks and calculating some ecological
indices.
Description: Bipartite provides functions to viualise webs and
calculate a series of indices commonly used to describe pattern
in ecological webs. It focusses on webs consisting of only two
trophic levels, e.g. pollination webs or predator-prey-webs.
Visualisation is important to get an idea of what we are
actually looking at, while the indices summarise different
aspects of the webs topology.
Diff between bipartite versions 0.90 dated 2009-03-24 and 0.91 dated 2009-05-06
bipartite-0.90/bipartite/R/compart.r |only bipartite-0.90/bipartite/R/nestedness.corso.r |only bipartite-0.90/bipartite/man/discrepancy.rd |only bipartite-0.90/bipartite/man/nestedness.corso.Rd |only bipartite-0.91/bipartite/DESCRIPTION | 10 +++---- bipartite-0.91/bipartite/Jochentest.txt |only bipartite-0.91/bipartite/R/compart.R |only bipartite-0.91/bipartite/R/networklevel.R | 31 ++++++++++++++-------- bipartite-0.91/bipartite/R/plotweb.R | 10 ++----- bipartite-0.91/bipartite/R/robustness.r |only bipartite-0.91/bipartite/R/second.extinct.R | 25 ++++++++++------- bipartite-0.91/bipartite/R/wine.r |only bipartite-0.91/bipartite/Wishlist.txt | 8 ----- bipartite-0.91/bipartite/data/ollerton2003.rda |only bipartite-0.91/bipartite/man/bipartite-package.Rd | 15 +++++++--- bipartite-0.91/bipartite/man/discrepancy.Rd |only bipartite-0.91/bipartite/man/nestedness.Rd | 2 - bipartite-0.91/bipartite/man/networklevel.Rd | 12 ++++---- bipartite-0.91/bipartite/man/ollerton2003.Rd |only bipartite-0.91/bipartite/man/robustness.rd |only bipartite-0.91/bipartite/man/vazquez.example.rd | 22 +++++++-------- bipartite-0.91/bipartite/man/wine.rd |only bipartite-0.91/bipartite/vazquez_et_al_ms.pdf |only 23 files changed, 75 insertions(+), 60 deletions(-)
Author: Jose L. Izquierdo
Diff between Metabonomic versions 3.1.3 dated 2009-04-16 and 3.1.3.2 dated 2009-05-06
Title: GUI for Metabonomic Analysis
Description: Graphical User Interface for the Metabonomic Analysis
(Baseline, Normalization, Peak Detection, PCA, PLS, Nearest
Neigbourgt, Neural Network) developed to make easy this data
analysis.
Metabonomic-3.1.3.2/Metabonomic/DESCRIPTION | 10 +-
Metabonomic-3.1.3.2/Metabonomic/R/Baseline.Correction.R | 2
Metabonomic-3.1.3.2/Metabonomic/R/Import.data.R | 2
Metabonomic-3.1.3.2/Metabonomic/R/Manual.cut.R | 2
Metabonomic-3.1.3.2/Metabonomic/R/Met.Aligm.R | 2
Metabonomic-3.1.3.2/Metabonomic/R/Met.B.STAT.R | 2
Metabonomic-3.1.3.2/Metabonomic/R/Met.Baseline.R | 2
Metabonomic-3.1.3.2/Metabonomic/R/Met.Binning.R | 2
Metabonomic-3.1.3.2/Metabonomic/R/Met.Checkbox1.R | 2
Metabonomic-3.1.3.2/Metabonomic/R/Met.KNN.R | 2
Metabonomic-3.1.3.2/Metabonomic/R/Met.LDA.R | 2
Metabonomic-3.1.3.2/Metabonomic/R/Met.LDA.multi.R | 2
Metabonomic-3.1.3.2/Metabonomic/R/Met.LDA.multi2.R | 2
Metabonomic-3.1.3.2/Metabonomic/R/Met.Load.Data.R | 2
Metabonomic-3.1.3.2/Metabonomic/R/Met.Metabolites.R | 2
Metabonomic-3.1.3.2/Metabonomic/R/Met.NN1.R | 2
Metabonomic-3.1.3.2/Metabonomic/R/Met.NN2.R | 2
Metabonomic-3.1.3.2/Metabonomic/R/Met.Norm.R | 2
Metabonomic-3.1.3.2/Metabonomic/R/Met.Order.R | 2
Metabonomic-3.1.3.2/Metabonomic/R/Met.Outliers.R | 2
Metabonomic-3.1.3.2/Metabonomic/R/Met.PCA.R | 2
Metabonomic-3.1.3.2/Metabonomic/R/Met.PLS1.R | 2
Metabonomic-3.1.3.2/Metabonomic/R/Met.PLS3D.R | 2
Metabonomic-3.1.3.2/Metabonomic/R/Met.RadioBox1.R | 2
Metabonomic-3.1.3.2/Metabonomic/R/Met.RadioBox2.R | 2
Metabonomic-3.1.3.2/Metabonomic/R/Met.Save.Data.R | 2
Metabonomic-3.1.3.2/Metabonomic/R/Met.Selection.R | 2
Metabonomic-3.1.3.2/Metabonomic/R/Met.Show.R | 2
Metabonomic-3.1.3.2/Metabonomic/R/Met.delete.R | 2
Metabonomic-3.1.3.2/Metabonomic/R/Met.modalDialog.R | 2
Metabonomic-3.1.3.2/Metabonomic/R/Met.modalDialog2.R | 2
Metabonomic-3.1.3.2/Metabonomic/R/Met.modalDialog3.R | 2
Metabonomic-3.1.3.2/Metabonomic/R/Met.modalDialog4.R | 2
Metabonomic-3.1.3.2/Metabonomic/R/Met.model.1.R | 2
Metabonomic-3.1.3.2/Metabonomic/R/Met.peak.detection.R | 2
Metabonomic-3.1.3.2/Metabonomic/R/Met.redo.R | 2
Metabonomic-3.1.3.2/Metabonomic/R/Met.spectrum.2.R | 2
Metabonomic-3.1.3.2/Metabonomic/R/Met.spectrum.R | 2
Metabonomic-3.1.3.2/Metabonomic/R/Met.undo.R | 2
Metabonomic-3.1.3.2/Metabonomic/R/Metabonomic.R | 62 +++++++++-------
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Metabonomic-3.1.3.2/Metabonomic/R/Require.R | 2
Metabonomic-3.1.3.2/Metabonomic/R/TABLE.R | 2
Metabonomic-3.1.3.2/Metabonomic/R/Try.R | 2
Metabonomic-3.1.3.2/Metabonomic/R/manual.model.R | 2
Metabonomic-3.1.3.2/Metabonomic/R/showData2.R | 2
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Metabonomic-3.1.3/Metabonomic/inst/493.bmp |only
Metabonomic-3.1.3/Metabonomic/inst/51.bmp |only
Metabonomic-3.1.3/Metabonomic/inst/52.bmp |only
Metabonomic-3.1.3/Metabonomic/inst/62.bmp |only
Metabonomic-3.1.3/Metabonomic/inst/726.bmp |only
63 files changed, 85 insertions(+), 75 deletions(-)
Author: R port by Douglas Bates
Diff between EngrExpt versions 0.1-5 dated 2009-04-15 and 0.1-6 dated 2009-05-06
Title: Data sets from "Introductory Statistics for Engineering
Experimentation"
Description: Datasets from Nelson, Coffin and Copeland "Introductory
Statistics for Engineering Experimentation" (Elsevier, 2003)
with sample code.
DESCRIPTION | 12 +++++++-----
data/bright.rda |binary
data/deink2.rda |binary
data/moisture.rda |binary
data/mw.rda |binary
data/separate.rda |binary
data/temprate.rda |binary
data/tpaste.rda |binary
man/bright.Rd | 11 ++++++-----
man/moisture.Rd | 14 +++++++++-----
man/sarea.Rd | 1 -
man/tpaste.Rd | 19 +++++++++++++++----
man/yield.Rd | 5 +++--
13 files changed, 40 insertions(+), 22 deletions(-)
Author: Gordon Smyth with contributions from Yifang Hu and Peter Dunn
Title: Statistical Modeling
Description: Various statistical modeling functions including growth
curve comparisons, limiting dilution analysis, mixed linear
models, heteroscedastic regression, Tweedie family generalized
linear models, the inverse-Gaussian distribution and Gauss
quadrature.
Diff between statmod versions 1.3.8 dated 2008-11-19 and 1.4.0 dated 2009-05-06
DESCRIPTION | 30 +++-- R/glmscoretest.R |only R/limdil.R | 231 +++++++++++++++++++++++++++++++++++------- inst/doc/changelog.txt | 21 +++ man/glmscoretest.Rd |only man/growthcurve.Rd | 6 + man/invgauss.Rd | 2 man/limdil.Rd | 26 +++- man/plot.limdil.Rd |only man/remlscor.Rd | 4 man/remlscorgamma.Rd | 4 tests/statmod-Tests.R | 95 ----------------- tests/statmod-Tests.Rout.save | 224 ---------------------------------------- 13 files changed, 265 insertions(+), 378 deletions(-)
Author: Russell V. Lenth
Title: Response-surface analysis
Description: Provides functions to generate response-surface designs,
fit first- and second-order response-surface models, make
contour plots, obtain the path of steepest ascent, and do
canonical analysis.
Diff between rsm versions 1.11 dated 2009-03-08 and 1.12 dated 2009-05-06
DESCRIPTION | 31 ++++++++++++++++--------------- inst/CITATION | 10 ++++++---- inst/NEWS | 4 ++++ inst/doc/rsm.pdf |binary 4 files changed, 26 insertions(+), 19 deletions(-)
Author: Devin S. Johnson
Title: Fit continuous-time correlated random walk models for animal
movement data
Description: The (C)orrelated (RA)ndom (W)alk (L)ibrary of R functions
was designed for fitting continuous-time correlated random walk
(CTCRW) models with time indexed covariates. The model is fit
using the Kalman-Filter on a state space version of the
continuous-time staochistic movement process.
Diff between crawl versions 1.0-3 dated 2009-02-03 and 1.0-4 dated 2009-05-06
DESCRIPTION | 34 +++++++++++++++++++--------------- R/crwMLE.R | 13 +++++++++++-- R/crwN2ll.R | 6 +++--- R/crwPredict.R | 6 ++++-- R/intToPOSIX.r |only R/mergeTrackStop.R | 4 ++-- man/crawl-package.Rd | 6 +++--- man/crwMLE.Rd | 19 +++++++++++-------- man/intToPOSIX.Rd |only man/northernFurSeal.Rd | 3 +-- 10 files changed, 54 insertions(+), 37 deletions(-)
Author: Matthieu Lesnoff
Diff between aod versions 1.1-30 dated 2009-05-05 and 1.1-31 dated 2009-05-06
Title: Analysis of Overdispersed Data
Description: This package provides a set of functions to analyse
overdispersed counts or proportions. Most of the methods are
already available elsewhere but are scattered in different
packages. The proposed functions should be considered as
complements to more sophisticated methods such as generalized
estimating equations (GEE) or generalized linear mixed effect
models (GLMM).
DESCRIPTION | 8 ++++----
inst/CITATION | 3 +--
man/aod-pkg.Rd | 4 ++--
3 files changed, 7 insertions(+), 8 deletions(-)
Author: Renan Cortes
Diff between RcmdrPlugin.qcc versions 1.0-3 dated 2009-05-05 and 1.0-4 dated 2009-05-06
More information about RcmdrPlugin.qcc at CRAN
Title: Rcmdr qcc Plug-In
Description: This package provides an Rcmdr "plug-in" based on the qcc
package, and it provides an integration between the user and
the tools of SPC.
DESCRIPTION | 6 +++---
R/RcmdrPlugin.qcc.r | 4 ++--
man/RcmdrPlugin.qcc-package.Rd | 2 +-
3 files changed, 6 insertions(+), 6 deletions(-)
Permanent link
Author: Campo Elias Pardo
Diff between FactoClass versions 0.7.6 dated 2008-11-19 and 0.7.7 dated 2009-05-06
Title: Combination of Factorial Methods and Cluster Analysis
Description: Multivariate exploration of a data table with factorial
analysis and cluster methods.
DESCRIPTION | 28 +++++++++++++++++-----------
man/Vietnam.Rd | 27 +++++++++++++++------------
man/dudi.tex.Rd | 41 +++++++++++++++++++++++------------------
man/plotFactoClass.Rd | 3 ++-
4 files changed, 57 insertions(+), 42 deletions(-)
Author: Matthias Graser
Title: EM-Algorithm for Jump Diffusion processes
Description: Calculates parameters for Jump Diffusion processes via
EM-Algorithm. The jumps-times are considered to be bernoulli
distributed with normally distributed jump-sizes.
Diff between EMJumpDiffusion versions 1.3.4 dated 2009-04-16 and 1.4 dated 2009-05-06
DESCRIPTION | 10 +++++----- R/rbern.R |only man/EMJumpDiffusion-package.Rd | 6 +++--- man/rbern.Rd |only man/simulate.Rd | 2 -- 5 files changed, 8 insertions(+), 10 deletions(-)
More information about EMJumpDiffusion at CRAN
Permanent link
Author: Duncan Temple Lang
Diff between rggobi versions 2.1.10 dated 2008-08-14 and 2.1.13 dated 2009-05-05
Title: Interface between R and GGobi
Description: The rggobi package provides a command-line interface to
GGobi, an interactive and dynamic graphics package. Rggobi
complements GGobi's graphical user interface, providing a way
to fluidly transition between analysis and exploration, as well
as automating common tasks.
DESCRIPTION | 26 ++++++++++++++++----------
NAMESPACE | 1 +
R/call.r | 2 +-
R/data.r | 4 ++++
R/display.r | 4 +---
R/ggobi.r | 6 +++---
R/gtk.r | 1 -
aclocal.m4 | 4 ++--
demo/ball.R | 4 ++--
load.r | 2 +-
man/GGobiCall-n1.rd | 2 +-
man/check-versions-qe.rd |only
man/displays-GGobi-4v.rd | 2 +-
man/ggobi-version-ao.rd | 6 +++---
man/stormtracks.rd | 5 ++---
src/Makevars | 4 ++--
src/brush.c | 2 +-
src/dataset.c | 2 +-
src/ggobi.c | 5 -----
19 files changed, 42 insertions(+), 40 deletions(-)
Author: Ji-Hyung Shin
Diff between luca versions 1.0-4 dated 2009-04-19 and 1.0-5 dated 2009-05-05
Title: Likelihood inference from case-control data Under Covariate
Assumptions (LUCA)
Description: Likelihood inference in case-control studies of a rare
disease under independence or simple dependence of genetic and
non-genetic covariates
DESCRIPTION | 6 +++---
inst/CITATION | 6 +++---
inst/ChangeLog | 4 ++++
3 files changed, 10 insertions(+), 6 deletions(-)
Author: Thomas Lumley
Diff between leaps versions 2.8 dated 2009-02-25 and 2.9 dated 2009-05-05
Title: regression subset selection
Description: Regression subset selection including exhaustive search
DESCRIPTION | 12 +++++++-----
NAMESPACE | 3 +++
NEWS | 4 ++++
R/leaps.R | 44 ++++++++++++++++++++++++++++++++++++++++++++
man/leaps.Rd | 9 ++++++++-
man/regsubsets.Rd | 44 +++++++++++++++++++++++++++++++++++++++-----
6 files changed, 105 insertions(+), 11 deletions(-)
Author: Marco Scutari
Title: Bayesian network structure learning
Description: Bayesian network structure learning via constraint-based
(also known as 'conditional independence') and score-based
algorithms. This package implements the Grow-Shrink (GS)
algorithm, the Incremental Association (IAMB) algorithm, the
Interleaved-IAMB (Inter-IAMB) algorithm, the Fast-IAMB
(Fast-IAMB) algorithm, the Max-Min Parents and Children (MMPC)
algorithm and the Hill-Climbing (HC) greedy search algorithm
for both discrete and Gaussian networks, along with many score
functions and conditional independence tests. Some utility
functions (model comparison and manipulation, random data
generation, arc orientation testing, simple and advanced plots)
are also included.
Diff between bnlearn versions 1.3 dated 2009-03-29 and 1.4 dated 2009-05-05
bnlearn-1.3/bnlearn/data/learning.test.txt |only bnlearn-1.4/bnlearn/Changelog | 17 +++ bnlearn-1.4/bnlearn/DESCRIPTION | 10 - bnlearn-1.4/bnlearn/NAMESPACE | 1 bnlearn-1.4/bnlearn/R/arc.strength.R | 4 bnlearn-1.4/bnlearn/R/backend-indep.R | 30 ++--- bnlearn-1.4/bnlearn/R/choose.direction.R | 6 - bnlearn-1.4/bnlearn/R/ci.test.R | 22 ++-- bnlearn-1.4/bnlearn/R/fast-iamb.R | 24 ++-- bnlearn-1.4/bnlearn/R/formula.R | 7 + bnlearn-1.4/bnlearn/R/frontend-bn.R | 11 -- bnlearn-1.4/bnlearn/R/frontend-formula.R | 13 ++ bnlearn-1.4/bnlearn/R/frontend-learning.R | 37 +++---- bnlearn-1.4/bnlearn/R/frontend-print.R | 12 +- bnlearn-1.4/bnlearn/R/frontend-score.R | 29 ++--- bnlearn-1.4/bnlearn/R/frontend-simulation.R | 8 - bnlearn-1.4/bnlearn/R/globals.R | 11 +- bnlearn-1.4/bnlearn/R/graphviz.R | 8 + bnlearn-1.4/bnlearn/R/grow-shrink.R | 24 ++-- bnlearn-1.4/bnlearn/R/incremental-association.R | 24 ++-- bnlearn-1.4/bnlearn/R/inter-iamb.R | 31 ++---- bnlearn-1.4/bnlearn/R/learning-algorithms.R | 61 ++++++------ bnlearn-1.4/bnlearn/R/maxmin-pc.R | 35 +++--- bnlearn-1.4/bnlearn/R/scores.R | 6 - bnlearn-1.4/bnlearn/R/simulation.R | 83 ++++++++++++++-- bnlearn-1.4/bnlearn/R/test.R | 18 --- bnlearn-1.4/bnlearn/R/utils-graph.R | 48 ++++----- bnlearn-1.4/bnlearn/R/utils-sanitization.R | 68 +++++++++++-- bnlearn-1.4/bnlearn/data/alarm.rda |only bnlearn-1.4/bnlearn/data/learning.test.rda |only bnlearn-1.4/bnlearn/data/marks.rda |only bnlearn-1.4/bnlearn/inst |only bnlearn-1.4/bnlearn/man/00.bnlearn-package.Rd | 121 ++++++++++++------------ bnlearn-1.4/bnlearn/man/10.gs.Rd | 31 ++---- bnlearn-1.4/bnlearn/man/11.iamb.Rd | 25 ++-- bnlearn-1.4/bnlearn/man/12.fast.iamb.Rd | 24 ++-- bnlearn-1.4/bnlearn/man/13.inter.iamb.Rd | 24 ++-- bnlearn-1.4/bnlearn/man/14.mmpc.Rd | 26 ++--- bnlearn-1.4/bnlearn/man/15.hc.Rd | 16 +-- bnlearn-1.4/bnlearn/man/20.mb.Rd | 19 +-- bnlearn-1.4/bnlearn/man/22.modelstring.Rd | 6 - bnlearn-1.4/bnlearn/man/24.graphgen.Rd | 7 - bnlearn-1.4/bnlearn/man/30.score.Rd | 21 ++-- bnlearn-1.4/bnlearn/man/31.ci.test.Rd | 25 ++++ bnlearn-1.4/bnlearn/man/40.rbn.Rd | 13 -- bnlearn-1.4/bnlearn/man/A0.learning-test.Rd | 63 +----------- bnlearn-1.4/bnlearn/man/A1.gaussian-test.Rd | 25 +--- bnlearn-1.4/bnlearn/man/A2.asia.Rd | 68 ++----------- bnlearn-1.4/bnlearn/man/A3.lizards.Rd | 13 +- bnlearn-1.4/bnlearn/man/A4.alarm.Rd |only bnlearn-1.4/bnlearn/man/A5.marks.Rd |only bnlearn-1.4/bnlearn/src/bayesian.network.c | 24 ++++ bnlearn-1.4/bnlearn/src/monte.carlo.c | 2 53 files changed, 648 insertions(+), 553 deletions(-)
Author: Matthieu Lesnoff
Diff between aod versions 1.1-29 dated 2008-10-10 and 1.1-30 dated 2009-05-05
Title: Analysis of Overdispersed Data
Description: This package provides a set of functions to analyse
overdispersed counts or proportions. Most of the methods are
already available elsewhere but are scattered in different
packages. The proposed functions should be considered as
complements to more sophisticated methods such as generalized
estimating equations (GEE) or generalized linear mixed effect
models (GLMM).
DESCRIPTION | 37 +++++++++++++++++++++++--------------
inst/CITATION | 7 ++++---
man/aod-pkg.Rd | 6 +++---
man/logLik.Rd | 2 +-
4 files changed, 31 insertions(+), 21 deletions(-)
More information about ClinicalRobustPriors at CRAN
Permanent link
Author: Yves Croissant
Diff between plm versions 1.1-1 dated 2009-03-08 and 1.1-2 dated 2009-05-05
Title: Linear models for panel data
Description: A set of estimators and tests for panel data
plm-1.1-1/plm/R/plm.formula.R |only
plm-1.1-1/plm/R/plm.model.R |only
plm-1.1-1/plm/inst |only
plm-1.1-2/plm/DESCRIPTION | 15
plm-1.1-2/plm/R/divers.R | 64 ++-
plm-1.1-2/plm/R/dynformula.R |only
plm-1.1-2/plm/R/fixef.R | 9
plm-1.1-2/plm/R/pFormula.R | 10
plm-1.1-2/plm/R/pfunctions.R | 22 -
plm-1.1-2/plm/R/pgmm.R | 791 +++++++++--------------------------------
plm-1.1-2/plm/R/pgmm.methods.R |only
plm-1.1-2/plm/R/plm.R |only
plm-1.1-2/plm/R/plm.methods.R | 37 +
plm-1.1-2/plm/R/pserial.R | 1
plm-1.1-2/plm/R/pvcovHC.R | 6
plm-1.1-2/plm/changelog | 18
plm-1.1-2/plm/man/fixef.plm.Rd | 5
plm-1.1-2/plm/man/pgmm.Rd | 9
18 files changed, 335 insertions(+), 652 deletions(-)
Author: Robin K. S. Hankin
Title: Additive partitions of integers
Description: Additive partitions of integers. Enumerates the
partitions, unequal partitions, and restricted partitions of an
integer; the three corresponding partition functions are also
given. Set partitions are now included.
Diff between partitions versions 1.9-3 dated 2009-02-15 and 1.9-6 dated 2009-05-05
DESCRIPTION | 16 inst/doc/answers.Rdata |only inst/doc/partitionspaper.Rnw | 8 inst/doc/partitionspaper.pdf |binary inst/doc/scrabble.Rnw | 82 inst/doc/scrabble.pdf |binary inst/doc/setpartitions.Rnw | 7 inst/doc/setpartitions.pdf | 8057 +++++++++++++++++++++++++++++++------------ man/parts.Rd | 7 src/partitions.h | 18 10 files changed, 5943 insertions(+), 2252 deletions(-)
Author: Arne Henningsen
Title: Microeconomic Analysis and Modelling
Description: Tools for microeconomic analysis and microeconomic
modelling
Diff between micEcon versions 0.5-14 dated 2009-03-09 and 0.5-18 dated 2009-05-05
DESCRIPTION | 11 - INDEX | 1 R/cobbDouglasCalc.R | 26 ++ R/cobbDouglasDeriv.R |only R/quadFuncDeriv.R | 9 R/quadFuncEla.R | 2 R/translogCheckMono.R | 2 R/translogDeriv.R | 2 R/translogEla.R | 3 data/germanFarms.txt | 42 ++-- man/USMeatConsump.Rd | 2 man/aidsBestA0.Rd | 2 man/aidsCalc.Rd | 2 man/aidsConcav.Rd | 2 man/aidsConsist.Rd | 2 man/aidsElas.Rd | 2 man/aidsEst.Rd | 2 man/aidsMono.Rd | 2 man/aidsUtility.Rd | 2 man/cobbDouglasCalc.Rd | 19 +- man/cobbDouglasDeriv.Rd |only man/fitted.aidsEst.Rd | 2 man/germanFarms.Rd | 4 man/logLik.aidsEst.Rd | 2 man/lrtest.aidsEst.Rd | 2 man/predict.snqProfitEst.Rd | 2 man/print.snqProfitEst.Rd | 4 man/quadFuncDeriv.Rd | 17 + man/quadFuncEla.Rd | 2 man/residuals.snqProfitEst.Rd | 2 man/snqProfitCalc.Rd | 2 man/snqProfitEla.Rd | 2 man/snqProfitEst.Rd | 2 man/snqProfitFixEla.Rd | 2 man/snqProfitHessian.Rd | 2 man/snqProfitHessianDeriv.Rd | 2 man/snqProfitImposeConvexity.Rd | 2 man/snqProfitShadowPrices.Rd | 2 man/summary.aidsElas.Rd | 2 man/summary.aidsEst.Rd | 2 man/translogCheckMono.Rd | 2 man/translogDeriv.Rd | 2 man/translogEla.Rd | 16 - tests/aids.R | 52 ++--- tests/aids.Rout.save | 77 +++----- tests/cobbDouglasTest.R | 51 ++++- tests/cobbDouglasTest.Rout.save | 216 +++++++++++++++++++++-- tests/colMediansTest.Rout.save | 32 +-- tests/indices.Rout.save | 12 - tests/insertColRow.Rout.save | 12 - tests/npregHomTest.Rout.save | 12 - tests/quadFunc.R | 68 ++++--- tests/quadFunc.Rout.save | 120 ++++--------- tests/snqProfit.R | 8 tests/snqProfit.Rout.save | 369 +++++++++++++++++++--------------------- tests/translog.R | 10 - tests/translog.Rout.save | 54 +---- tests/translogCost.Rout.save | 12 - 58 files changed, 772 insertions(+), 545 deletions(-)
Author: Michal Czajkowski, Ryan Gill, Greg Rempala
Title: Logistic Joinpoint Regression
Description: Fits and tests logistic joinpoint models.
Diff between ljr versions 1.2-0 dated 2008-05-08 and 1.2-2 dated 2009-05-05
DESCRIPTION | 10 ++++++---- R/firstlib.R | 2 +- man/ljr0.rd | 2 +- man/ljr01.rd | 2 +- man/ljr1.rd | 2 +- man/ljr11.rd | 2 +- man/ljrb.rd | 2 +- man/ljrf.rd | 2 +- man/ljrjk.rd | 2 +- man/ljrk.rd | 2 +- man/ljrkk.rd | 2 +- src/Makevars | 2 +- 12 files changed, 17 insertions(+), 15 deletions(-)
Author: Nathan Stephens
Diff between hacks versions 0.1-5 dated 2009-01-23 and 0.1-8 dated 2009-05-05
Title: Convenient R Functions
Description: This package contains useful functions.
DESCRIPTION | 14 ++++++++------
R/difference.sign.test.r |only
R/rank.test.r |only
R/scale2.r |only
R/turning.point.test.r |only
R/wiki.table.r |only
man/difference.sign.test.rd |only
man/rank.test.rd |only
man/scale2.rd |only
man/turning.point.test.rd |only
man/wa.rd | 3 +--
man/wiki.table.rd |only
12 files changed, 9 insertions(+), 8 deletions(-)
Author: Robin K. S. Hankin; qrng functions by Duncan Murdoch and
multimin by Andrew Clausen
Title: wrapper for the Gnu Scientific Library
Description: An R wrapper for the special functions and quasi random
number generators of the Gnu Scientific Library
(http://www.gnu.org/software/gsl/). See gsl-package.Rd for
details of overall package organization, and Misc.Rd for some
functions that are widely used in the package.
Diff between gsl versions 1.8-13 dated 2009-03-30 and 1.8-14 dated 2009-05-05
DESCRIPTION | 6 +++--- inst/doc |only man/Airy.Rd | 10 +++++----- man/Bessel.Rd | 2 +- man/Coupling.Rd | 2 +- man/Dilog.Rd | 4 ++-- man/Elljac.Rd | 2 +- man/Expint.Rd | 2 +- man/Gamma.Rd | 4 ++-- man/Lambert.Rd | 4 ++-- man/Legendre.Rd | 2 +- man/Log.Rd | 8 ++++---- man/Misc.Rd | 4 ++-- man/Multimin.Rd | 6 +++--- man/Poly.Rd | 4 ++-- man/Qrng.Rd | 4 ++-- man/Rng.Rd | 6 +++--- man/Trig.Rd | 6 +++--- man/gsl-package.Rd | 18 +++++++++--------- 19 files changed, 47 insertions(+), 47 deletions(-)
Author: Tim Coelli, Arne Henningsen
Title: Stochastic Frontier Analysis
Description: Maximum Likelihood Estimation of Stochastic Frontier
Production and Cost Functions. Two specifications are
available: the error components specification with time-varying
efficiencies (Battese and Coelli, 1992) and a model
specification in which the firm effects are directly influenced
by a number of variables (Battese and Coelli, 1995).
Diff between frontier versions 0.9-8 dated 2009-01-14 and 0.99-2 dated 2009-05-05
DESCRIPTION | 27 INDEX |only NAMESPACE | 7 NEWS |only R/efficiencies.R |only R/efficiencies.frontier.R |only R/elas.frontierQuad.R |only R/frontier.R | 254 R/frontierQuad.R |only R/frontierTranslogRay.R |only R/logLik.frontier.R |only R/print.frontier.R | 14 R/print.summary.frontier.R | 14 man/coef.frontier.Rd | 4 man/coef.summary.frontier.Rd | 4 man/efficiencies.Rd |only man/efficiencies.frontier.Rd |only man/elas.frontierQuad.Rd |only man/frontier.Rd | 185 man/frontierQuad.Rd |only man/frontierTranslogRay.Rd |only man/logLik.frontier.Rd |only man/riceProdPhil.Rd | 2 man/summary.frontier.Rd | 17 man/vcov.frontier.Rd | 4 tests/frontier41.Rout.save | 70 tests/frontierTest.R | 171 tests/frontierTest.Rout.save |11017 +++++++++++++++++++++++++++---------------- tests/translogRay.R |only tests/translogRay.Rout.save |only 30 files changed, 7612 insertions(+), 4178 deletions(-)
Author: R-core members, Saikat DebRoy
Diff between foreign versions 0.8-34 dated 2009-03-12 and 0.8-35 dated 2009-05-05
Title: Read Data Stored by Minitab, S, SAS, SPSS, Stata, Systat, dBase,
...
Description: Functions for reading and writing data stored by
statistical packages such as Minitab, S, SAS, SPSS, Stata,
Systat, ..., and for reading and writing .dbf (dBase) files.
ChangeLog | 9 +++++++++
DESCRIPTION | 8 ++++----
src/Rdbfread.c | 18 ++++++++++--------
src/dbfopen.c | 14 ++++++++++++--
4 files changed, 35 insertions(+), 14 deletions(-)
Author: Thomas Lumley
Title: bounded memory linear and generalized linear models
Description: Regression for data too large to fit in memory
Diff between biglm versions 0.6 dated 2009-02-24 and 0.7 dated 2009-05-05
DESCRIPTION | 8 ++++-- NAMESPACE | 4 ++- NEWS | 11 +++++++++ R/bigglm.R | 21 ++++++++++++++--- R/biglm.R | 7 ++++- R/coef.bigqr.R | 1 R/extractors.R | 2 - R/predict.R | 2 - R/sqlite.R | 69 +++++++++++++++++++++++++++++---------------------------- R/vcov.biglm.R | 2 - man/bigglm.Rd | 8 ++++-- 11 files changed, 86 insertions(+), 49 deletions(-)
Author: Francois Husson, Sebastien Le
Title: Sensory data analysis with R
Description: an R package for analysing sensory data
Diff between SensoMineR versions 1.08 dated 2008-09-16 and 1.09 dated 2009-05-05
DESCRIPTION | 27 NAMESPACE | 2 R/averagetable.R | 3 R/coltable.R | 8 R/coltable2.R |only R/cpa.R | 49 - R/fast.R |only R/indscal.R | 2 R/optimaldesign.R | 1575 ++++++++++++++++++----------------------------- R/panellipse.R | 4 R/plot.fast.R |only R/plotellipseinter.R | 4 R/plotellipseinterhmfa.R | 4 R/print.fast.R |only data/perfume.rda |only man/chocolates.Rd | 12 man/cocktail.Rd | 10 man/fast.Rd |only man/napping.Rd | 8 man/panelmatch.Rd | 10 man/perfume.Rd |only man/plot.fast.Rd |only man/print.fast.Rd |only man/simulation.Rd | 3 24 files changed, 697 insertions(+), 1024 deletions(-)
Author: Renan Cortes
Diff between RcmdrPlugin.qcc versions 1.0-2 dated 2009-05-04 and 1.0-3 dated 2009-05-05
More information about RcmdrPlugin.qcc at CRAN
Title: Rcmdr qcc Plug-In
Description: This package provides an Rcmdr "plug-in" based on the qcc
package, and it provides an integration between the user and
the tools of SPC.
DESCRIPTION | 6 +++---
inst/etc/menus.txt | 2 +-
man/RcmdrPlugin.qcc-package.Rd | 2 +-
3 files changed, 5 insertions(+), 5 deletions(-)
Permanent link
Author: S original by Matt Wand. R port by Brian Ripley
Diff between KernSmooth versions 2.22-22 dated 2008-01-27 and 2.23-1 dated 2009-05-05
Title: Functions for kernel smoothing for Wand & Jones (1995)
Description: functions for kernel smoothing (and density estimation)
corresponding to the book: Wand, M.P. and Jones, M.C. (1995)
"Kernel Smoothing".
DESCRIPTION | 16
PORTING | 8
R/all.R | 1827 +++++++++++++++++++++++-----------------------------
inst/po |only
man/bkde.Rd | 8
man/bkde2D.Rd | 4
man/bkfe.Rd | 4
man/dpih.Rd | 4
man/dpik.Rd | 9
man/dpill.Rd | 2
man/locpoly.Rd | 11
po/R-KernSmooth.pot | 29
po/R-en@quot.po |only
src/linbin.f | 17
src/rlbin.f | 15
15 files changed, 895 insertions(+), 1059 deletions(-)
Author: Robin K. S. Hankin
Title: Bayesian Analysis of Computer Code Output
Permanent link
Author: Ingo Feinerer, with contributions from Christian Buchta, Kurt
Hornik, David Meyer, and Fridolin Wild
Title: Text Mining Package
Description: A framework for text mining applications within R.
Diff between tm versions 0.3-4 dated 2009-04-29 and 0.3-4.1 dated 2009-05-04
DESCRIPTION | 8 ++++---- NAMESPACE | 24 ++++++++++++------------ R/matrix.R | 8 -------- inst/doc/extensions.pdf |binary inst/doc/tm.pdf |binary 5 files changed, 16 insertions(+), 24 deletions(-)
Author: Yu-Sung Su
Diff between R2jags versions 0.01-22 dated 2009-04-15 and 0.01-23 dated 2009-05-04
Title: A Package for Running jags from R
Description: Using this package to call jags from R.
CHANGELOG | 4 ++++
DESCRIPTION | 8 ++++----
R/as.bugs.array2.R | 5 +++--
R/jags.sims.R | 23 +++++++++++++++--------
4 files changed, 26 insertions(+), 14 deletions(-)
Author: Clement Calenge, contributions from Mathieu Basille, Stephane
Dray and Scott Fortmann-Roe
Title: Analysis of habitat selection by animals
Description: A collection of tools for the analysis of habitat
selection by animals
Diff between adehabitat versions 1.8.2 dated 2009-02-15 and 1.8.3 dated 2009-05-04
DESCRIPTION | 14 +++++++++----- R/dunnfa.r | 2 +- R/kernelbb.r | 1 + R/kernelkc.r | 2 ++ R/kerneloverlap.R | 4 ++-- man/adehabitat-package.Rd | 4 ++-- man/kernelkc.Rd | 9 +++++++-- src/tests.c | 8 ++++---- 8 files changed, 28 insertions(+), 16 deletions(-)
Author: Bernhard Pfaff
Title: VAR Modelling
Description: Estimation, lag selection, diagnostic testing,
forecasting, causality analysis, forecast error variance
decomposition and impulse response functions of VAR models and
estimation of SVAR/SVEC models.
Diff between vars versions 1.4-4 dated 2009-01-25 and 1.4-5 dated 2009-05-04
DESCRIPTION | 34 ++++++++++++++++++++-------------- R/stability.R | 2 +- inst/ChangeLog | 5 +++++ inst/doc/vars.pdf |binary 4 files changed, 26 insertions(+), 15 deletions(-)
Author: Stefan Wilhelm
Diff between tmvtnorm versions 0.4-2 dated 2009-03-29 and 0.5-1 dated 2009-05-04
Title: Truncated Multivariate Normal Distribution
Description: Computes truncated multivariate normal probabilities,
quantiles and densities, including one-dimensional marginal
densities
tmvtnorm-0.4-2/tmvtnorm/Beispiele2.R |only
tmvtnorm-0.4-2/tmvtnorm/Bug.txt |only
tmvtnorm-0.5-1/tmvtnorm/DESCRIPTION | 8
tmvtnorm-0.5-1/tmvtnorm/R/dmvtnorm.R | 96
tmvtnorm-0.5-1/tmvtnorm/R/rtmvnorm.R |only
tmvtnorm-0.5-1/tmvtnorm/Rplots.pdf |14761 ++++++++++++++++++++++++++---
tmvtnorm-0.5-1/tmvtnorm/Rplots.ps | 1344 --
tmvtnorm-0.5-1/tmvtnorm/TODO.txt |only
tmvtnorm-0.5-1/tmvtnorm/Verbesserungen.txt |only
tmvtnorm-0.5-1/tmvtnorm/man/rtmvtnorm.Rd |only
tmvtnorm-0.5-1/tmvtnorm/man/tmvtnorm.Rd | 17
tmvtnorm-0.5-1/tmvtnorm/prof.out | 3
tmvtnorm-0.5-1/tmvtnorm/prof2.out | 22
tmvtnorm-0.5-1/tmvtnorm/readme.txt | 31
tmvtnorm-0.5-1/tmvtnorm/release-notes.txt | 3
tmvtnorm-0.5-1/tmvtnorm/rmvnorm.out |only
tmvtnorm-0.5-1/tmvtnorm/rtmvnorm.out |only
tmvtnorm-0.5-1/tmvtnorm/sampling.R |only
18 files changed, 13889 insertions(+), 2396 deletions(-)
Author: Gaston Sanchez
Diff between plspm versions 0.1-0 dated 2009-04-15 and 0.1-1 dated 2009-05-04
Title: Partial Least Squares data analysis methods
Description: Partial Least Squares (PLS) methods with emphasis on
structural equation models with latent variables.
DESCRIPTION | 14 +++----
R/nipals.R |only
R/nipals.default.R |only
R/plot.nipals.R |only
R/plot.plsca.R |only
R/plot.plsreg1.R |only
R/plot.plsreg2.R |only
R/plsca.R |only
R/plsca.default.R |only
R/plspm.R | 4 +-
R/plspm.default.R | 95 ++++++++++++++++++++++++++++++++++++++++++---------
R/plsreg1.R |only
R/plsreg1.default.R |only
R/plsreg2.R |only
R/plsreg2.default.R |only
R/print.nipals.R |only
R/print.plsca.R |only
R/print.plspm.R | 11 +----
R/print.plsreg1.R |only
R/print.plsreg2.R |only
data/vehicles.rda |only
data/wines.rda |only
man/arizona.Rd | 2 -
man/nipals.Rd |only
man/orange.Rd | 2 -
man/plot.nipals.Rd |only
man/plot.plsca.Rd |only
man/plot.plsreg1.Rd |only
man/plot.plsreg2.Rd |only
man/plsca.Rd |only
man/plspm-package.Rd | 13 ++++--
man/plspm.Rd | 24 +++++++-----
man/plsreg1.Rd |only
man/plsreg2.Rd |only
man/print.nipals.Rd |only
man/print.plsca.Rd |only
man/print.plsreg1.Rd |only
man/print.plsreg2.Rd |only
man/satisfaction.Rd | 2 -
man/summary.plspm.Rd | 7 +++
man/vehicles.Rd |only
man/wines.Rd |only
42 files changed, 124 insertions(+), 50 deletions(-)
Author: Aaron A. King, Edward L. Ionides, Carles Martinez Breto, Steve
Ellner, Bruce Kendall
Title: Statistical inference for partially observed Markov processes
Description: Inference methods for partially-observed Markov processes
Diff between pomp versions 0.23-2 dated 2009-04-19 and 0.23-5 dated 2009-05-04
DESCRIPTION | 10 NAMESPACE | 3 R/euler.R | 79 - R/pomp.R | 84 - R/trajectory-pomp.R | 29 data/euler.sir.rda |only data/ou2.rda |binary data/rw2.rda |only inst/CITATION | 2 inst/ChangeLog | 70 + inst/doc/Makefile | 1 inst/doc/Rplots.pdf | 2332 ++++++++++++++++++------------------- inst/doc/compiled_code_in_pomp.Rnw | 4 inst/doc/compiled_code_in_pomp.pdf |binary inst/doc/intro_to_pomp.pdf |binary inst/examples/euler_sir.R | 4 inst/examples/logistic.R | 2 inst/examples/rw2.R | 67 - inst/include/pomp.h | 58 man/euler.Rd | 106 - man/euler.sir.Rd |only man/pomp-package.Rd | 2 man/rw2.Rd |only src/bspline.c | 10 src/dprocess.c | 2 src/dsobol.c | 5 src/euler.c | 159 +- src/lookup_table.c | 2 src/pomp.h | 58 src/pomp_internal.h | 24 src/rprocess.c | 2 tests/logistic.R | 2 tests/logistic.Rout.save | 7 tests/ou2-kalman.Rout.save | 22 tests/ou2-mif.Rout.save | 12 tests/rw2.R | 32 tests/rw2.Rout.save | 38 tests/sir.R | 48 tests/sir.Rout.save | 56 39 files changed, 1706 insertions(+), 1626 deletions(-)
Author: Jim Lemon,Ben Bolker,Sander Oom, Eduardo Klein,Barry
Rowlingson, Hadley Wickham,Anupam Tyagi, Olivier
Eterradossi,Gabor Grothendieck, Michael Toews,John Kane,Mike
Cheetham, Rolf Turner,Carl Witthoft,Julian Stander, Thomas
Petzoldt,Remko Duursma,Elisa Biancotto, Ofir Levy
Title: Various plotting functions
Description: Lots of plots, various labeling, axis and color scaling
functions.
Diff between plotrix versions 2.5-4 dated 2009-03-19 and 2.5-5 dated 2009-05-04
DESCRIPTION | 10 ++-- INDEX | 3 + NEWS |only R/addtable2plot.R | 11 ++--- R/barp.R | 1 R/bumpchart.R |only R/count.overplot.R | 2 R/dispersion.R | 5 +- R/fullaxis.R |only R/plotCI.R | 6 +- R/spreadout.R |only R/staircase.plot.R | 17 +++++-- R/twoord.plot.R | 110 ++++++++++++++++++++++++++++---------------------- demo/plotrix.R | 30 ++++++++----- man/addtable2plot.Rd | 2 man/barp.Rd | 8 +++ man/boxed.labels.Rd | 8 +++ man/bumpchart.Rd |only man/count.overplot.Rd | 4 - man/dispersion.Rd | 15 +++++- man/fullaxis.Rd |only man/spreadout.Rd |only man/staircase.plot.Rd | 6 +- man/twoord.plot.Rd | 26 ++++++++++- 24 files changed, 174 insertions(+), 90 deletions(-)
Author: Jose Pinheiro
Diff between nlme versions 3.1-90 dated 2008-12-30 and 3.1-91 dated 2009-05-04
Title: Linear and Nonlinear Mixed Effects Models
Description: Fit and compare Gaussian linear and nonlinear
mixed-effects models.
ChangeLog | 8 ++
DESCRIPTION | 22 +++---
man/Assay.Rd | 34 +++++-----
man/BodyWeight.Rd | 36 +++++------
man/Dialyzer.Rd | 46 +++++++-------
man/Earthquake.Rd | 56 ++++++++---------
man/Gasoline.Rd | 6 -
man/Glucose.Rd | 30 ++++-----
man/IGF.Rd | 26 ++++----
man/MathAchSchool.Rd | 52 ++++++++--------
man/MathAchieve.Rd | 46 +++++++-------
man/Milk.Rd | 30 ++++-----
man/Muscle.Rd | 18 ++---
man/Nitrendipene.Rd | 26 ++++----
man/PBG.Rd | 38 +++++------
man/Pixel.Rd | 32 ++++-----
man/Rail.Rd | 20 +++---
man/RatPupWeight.Rd | 40 ++++++------
man/Relaxin.Rd | 22 +++---
man/Remifentanil.Rd | 78 ++++++++++++------------
man/Tetracycline1.Rd | 32 ++++-----
man/Tetracycline2.Rd | 32 ++++-----
man/Wafer.Rd | 62 +++++++++----------
man/Wheat.Rd | 28 ++++----
man/Wheat2.Rd | 146 ++++++++++++++++++++++-----------------------
man/ergoStool.Rd | 32 ++++-----
man/glsControl.Rd | 2
man/gnlsControl.Rd | 2
man/lmeControl.Rd | 2
man/phenoModel.Rd | 2
man/plot.nffGroupedData.Rd | 4 -
man/quinModel.Rd | 2
man/summary.pdMat.Rd | 8 +-
po/R-de.po |only
po/R-nlme.pot | 2
35 files changed, 516 insertions(+), 506 deletions(-)
Author: Simon Wood
Diff between mgcv versions 1.5-3 dated 2009-04-22 and 1.5-4 dated 2009-05-04
Title: GAMs with GCV/AIC/REML smoothness estimation and GAMMs by PQL
Description: Routines for GAMs and other generalized ridge regression
with multiple smoothing parameter selection by GCV, REML or
UBRE/AIC. Also GAMMs by REML or PQL. Includes a gam() function.
DESCRIPTION | 6 +++---
R/smooth.r | 17 ++++++++++++-----
changeLog | 8 ++++++++
src/matrix.c | 2 +-
4 files changed, 24 insertions(+), 9 deletions(-)
Author: Peter Solymos
Title: Multivariate Data Handling in Ecology and Biogeography
Description: A framework package aimed to provide standardized
computational environment for specialist work via object
classes to represent the data coded by samples, taxa and
segments (i.e. subpopulations, repeated measures). It supports
easy processing of the data along with cross tabulation and
relational data tables for samples and taxa. An object of class
`mefa' is a project specific compendium of the data and can be
easily used in further analyses. Methods are provided for
extraction, aggregation, conversion, plotting, summary and
reporting of `mefa' objects. Reports can be generated in plain
text or LaTeX format. Vignette contains worked examples.
Diff between mefa versions 3.0-0 dated 2009-02-17 and 3.0-1 dated 2009-05-04
mefa-3.0-0/mefa/man/as.data.frame.mefa.Rd |only mefa-3.0-1/mefa/DESCRIPTION | 42 ++++++++++++++++++++---------- mefa-3.0-1/mefa/R/as.array.mefa.R |only mefa-3.0-1/mefa/R/as.data.frame.stcs.R |only mefa-3.0-1/mefa/R/as.list.mefa.R |only mefa-3.0-1/mefa/R/as.matrix.mefa.R |only mefa-3.0-1/mefa/R/as.mefa.R | 14 +--------- mefa-3.0-1/mefa/R/as.mefa.array.R |only mefa-3.0-1/mefa/R/as.mefa.default.R |only mefa-3.0-1/mefa/R/as.mefa.list.R |only mefa-3.0-1/mefa/R/as.stcs.R | 5 ++- mefa-3.0-1/mefa/R/as.stcs.default.R |only mefa-3.0-1/mefa/R/mefa.R | 2 - mefa-3.0-1/mefa/inst/ChangeLog | 13 ++++++++- mefa-3.0-1/mefa/inst/doc/mefa.Rnw | 4 ++ mefa-3.0-1/mefa/inst/doc/mefa.pdf |binary mefa-3.0-1/mefa/man/aggregate.mefa.Rd | 2 + mefa-3.0-1/mefa/man/as.mefa.Rd |only mefa-3.0-1/mefa/man/dolina.Rd | 2 + mefa-3.0-1/mefa/man/fill.na.Rd | 2 + mefa-3.0-1/mefa/man/inflate.Rd | 2 + mefa-3.0-1/mefa/man/label.Rd | 2 + mefa-3.0-1/mefa/man/mefa.Rd | 6 ++-- mefa-3.0-1/mefa/man/mefaCheck.Rd | 2 + mefa-3.0-1/mefa/man/mefaCrosstab.Rd | 2 + mefa-3.0-1/mefa/man/mefaNestedless.Rd | 2 + mefa-3.0-1/mefa/man/mefaTables.Rd | 2 + mefa-3.0-1/mefa/man/mefalogo.Rd | 2 + mefa-3.0-1/mefa/man/mefaweb.Rd | 2 + mefa-3.0-1/mefa/man/melt.mefa.Rd | 2 + mefa-3.0-1/mefa/man/plot.mefa.Rd | 2 + mefa-3.0-1/mefa/man/qvector.Rd | 2 + mefa-3.0-1/mefa/man/report.mefa.Rd | 2 + mefa-3.0-1/mefa/man/stcs.Rd | 8 +++-- 34 files changed, 90 insertions(+), 34 deletions(-)
Author: J. R. M. Hosking
Title: Regional frequency analysis using L-moments
Description: Functions for regional frequency analysis using the
methods of J. R. M. Hosking and J. R. Wallis (1997), "Regional
frequency analysis: an approach based on L-moments".
Diff between lmomRFA versions 1.0 dated 2009-03-03 and 2.0 dated 2009-05-04
lmomRFA-1.0/lmomRFA/man/0-lmomRFA.Rd |only lmomRFA-2.0/lmomRFA/DESCRIPTION | 26 - lmomRFA-2.0/lmomRFA/NAMESPACE | 24 - lmomRFA-2.0/lmomRFA/NEWS | 59 ++ lmomRFA-2.0/lmomRFA/R/lmomRFA.r | 690 +++++++++++++++++++++++++++-- lmomRFA-2.0/lmomRFA/data/Cascades.r | 3 lmomRFA-2.0/lmomRFA/man/Appalach.Rd | 2 lmomRFA-2.0/lmomRFA/man/Cascades.Rd | 7 lmomRFA-2.0/lmomRFA/man/Maxwind.Rd | 2 lmomRFA-2.0/lmomRFA/man/cluagg.Rd | 6 lmomRFA-2.0/lmomRFA/man/cluinf.Rd | 4 lmomRFA-2.0/lmomRFA/man/clukm.Rd | 2 lmomRFA-2.0/lmomRFA/man/evplot.rfd.Rd |only lmomRFA-2.0/lmomRFA/man/lmomRFA-package.Rd |only lmomRFA-2.0/lmomRFA/man/regavlmom.Rd |only lmomRFA-2.0/lmomRFA/man/regdata.Rd |only lmomRFA-2.0/lmomRFA/man/regfit.Rd |only lmomRFA-2.0/lmomRFA/man/reglmr.Rd | 5 lmomRFA-2.0/lmomRFA/man/regquant.Rd |only lmomRFA-2.0/lmomRFA/man/regquantbounds.Rd |only lmomRFA-2.0/lmomRFA/man/regsamlmu.Rd | 19 lmomRFA-2.0/lmomRFA/man/regsimh.Rd |only lmomRFA-2.0/lmomRFA/man/regsimq.Rd |only lmomRFA-2.0/lmomRFA/man/regtst.Rd | 27 - lmomRFA-2.0/lmomRFA/man/sitequant.Rd |only lmomRFA-2.0/lmomRFA/man/summary.regtst.Rd | 5 lmomRFA-2.0/lmomRFA/src/lmomRFA.f | 31 - 27 files changed, 821 insertions(+), 91 deletions(-)
Author: J. R. M. Hosking
Title: L-moments
Description: Functions related to L-moments: computation of L-moments
of distributions and data samples; parameter estimation;
L-moment ratio diagram; plot vs. quantiles of an extreme-value
distribution.
Diff between lmom versions 1.2 dated 2009-03-16 and 1.3 dated 2009-05-04
lmom-1.2/lmom/man/0-lmom.Rd |only lmom-1.3/lmom/DESCRIPTION | 8 - lmom-1.3/lmom/NAMESPACE | 1 lmom-1.3/lmom/NEWS | 40 ++++++ lmom-1.3/lmom/R/lmom.r | 81 +++++++++---- lmom-1.3/lmom/man/evplot.Rd | 5 lmom-1.3/lmom/man/lmom-package.Rd |only lmom-1.3/lmom/man/lmrd.Rd | 225 +++++++++++++++++++------------------- lmom-1.3/lmom/src/lmom.f | 4 9 files changed, 224 insertions(+), 140 deletions(-)
Author: Bernhard Pfaff
Title: Generalized Orthogonal GARCH (GO-GARCH) models
Description: Implementation of the GO-GARCH model class
Diff between gogarch versions 0.6-8 dated 2009-03-09 and 0.6-9 dated 2009-05-04
DESCRIPTION | 32 +++++++++++++++++--------------- R/Methods-show.R | 4 ++-- inst/ChangeLog | 4 ++++ 3 files changed, 23 insertions(+), 17 deletions(-)
Author: Tomoaki Nakatani
Diff between ccgarch versions 0.1.2-2 dated 2009-04-16 and 0.1.3 dated 2009-05-04
Title: Conditional Correlation GARCH models
Description: Functions for estimating and simulating the family of the
CC-GARCH models.
ccgarch-0.1.2-2/ccgarch/R/loglik_dcc.R |only
ccgarch-0.1.2-2/ccgarch/man/loglik_dcc.Rd |only
ccgarch-0.1.3/ccgarch/DESCRIPTION | 8 +++----
ccgarch-0.1.3/ccgarch/NAMESPACE | 1
ccgarch-0.1.3/ccgarch/R/dcc_estimation.R | 32 +++++++++++++++++++++-------
ccgarch-0.1.3/ccgarch/R/robust_kurtosis.R | 2 +
ccgarch-0.1.3/ccgarch/R/robust_skewness.R | 2 +
ccgarch-0.1.3/ccgarch/man/dcc_estimation.Rd | 4 ++-
8 files changed, 35 insertions(+), 14 deletions(-)
Author: Kristin K. Nicodemus
Diff between catmap versions 1.5 dated 2008-06-08 and 1.6 dated 2009-05-04
Title: Case-control And Tdt Meta-Analysis Package
Description: catmap is an R package that conducts fixed-effects
(inverse variance) and random-effects (DerSimonian and Laird,
1986) meta-analyses of case-control or family-based (TDT)
genetic data; in addition, it performs meta-analyses combining
these two types of study designs. The fixed-effects model was
first described by Kazeem and Farrell (2005); the
random-effects model is described in Nicodemus (submitted).
catmap-1.5/catmap/R/catmap.R |only
catmap-1.6/catmap/DESCRIPTION | 26 +++++++++++++++++---------
catmap-1.6/catmap/R/catmap.r |only
catmap-1.6/catmap/man/catmap.cumulative.Rd | 2 +-
4 files changed, 18 insertions(+), 10 deletions(-)
Author: Michael J. Kane and John W. Emerson
Title: Manage massive matrices in R using C++, with support for shared
memory and memory-mapped files.
Description: Use C++ to create, store, access, and manipulate massive
matrices. Matrices may optionally be allocated to shared
memory and/or may use memory-mapped files.
Diff between bigmemory versions 3.5 dated 2009-04-15 and 3.6 dated 2009-05-04
bigmemory-3.5/bigmemory/include/boost/date_time.hpp |only bigmemory-3.5/bigmemory/include/boost/date_time/testfrmwk.hpp |only bigmemory-3.5/bigmemory/include/boost/exception/detail/cloning_base.hpp |only bigmemory-3.5/bigmemory/include/boost/exception/detail/counted_base.hpp |only bigmemory-3.5/bigmemory/include/boost/intrusive_ptr.hpp |only bigmemory-3.5/bigmemory/include/boost/iterator |only bigmemory-3.5/bigmemory/include/boost/preprocessor.hpp |only bigmemory-3.5/bigmemory/src/MSCexceptions.h |only bigmemory-3.6/bigmemory/DESCRIPTION | 8 bigmemory-3.6/bigmemory/LICENSE | 2 bigmemory-3.6/bigmemory/R/bigmatrix.R | 49 bigmemory-3.6/bigmemory/R/bigmatrixLib.R | 8 bigmemory-3.6/bigmemory/R/bigmatrixShm.R | 67 bigmemory-3.6/bigmemory/configure.Rout | 2 bigmemory-3.6/bigmemory/include/boost/config/abi/msvc_prefix.hpp | 16 bigmemory-3.6/bigmemory/include/boost/config/auto_link.hpp | 7 bigmemory-3.6/bigmemory/include/boost/config/compiler/borland.hpp | 56 bigmemory-3.6/bigmemory/include/boost/config/compiler/codegear.hpp |only bigmemory-3.6/bigmemory/include/boost/config/compiler/common_edg.hpp | 5 bigmemory-3.6/bigmemory/include/boost/config/compiler/digitalmars.hpp | 1 bigmemory-3.6/bigmemory/include/boost/config/compiler/gcc.hpp | 13 bigmemory-3.6/bigmemory/include/boost/config/compiler/intel.hpp | 9 bigmemory-3.6/bigmemory/include/boost/config/compiler/metrowerks.hpp | 1 bigmemory-3.6/bigmemory/include/boost/config/compiler/mpw.hpp | 2 bigmemory-3.6/bigmemory/include/boost/config/compiler/pgi.hpp | 3 bigmemory-3.6/bigmemory/include/boost/config/compiler/sgi_mipspro.hpp | 2 bigmemory-3.6/bigmemory/include/boost/config/compiler/sunpro_cc.hpp | 5 bigmemory-3.6/bigmemory/include/boost/config/compiler/vacpp.hpp | 1 bigmemory-3.6/bigmemory/include/boost/config/compiler/visualc.hpp | 18 bigmemory-3.6/bigmemory/include/boost/config/no_tr1/cmath.hpp |only bigmemory-3.6/bigmemory/include/boost/config/platform/bsd.hpp | 19 bigmemory-3.6/bigmemory/include/boost/config/select_compiler_config.hpp | 4 bigmemory-3.6/bigmemory/include/boost/config/stdlib/dinkumware.hpp | 5 bigmemory-3.6/bigmemory/include/boost/config/stdlib/libcomo.hpp | 4 bigmemory-3.6/bigmemory/include/boost/config/stdlib/libstdcpp3.hpp | 5 bigmemory-3.6/bigmemory/include/boost/config/stdlib/modena.hpp | 4 bigmemory-3.6/bigmemory/include/boost/config/stdlib/msl.hpp | 4 bigmemory-3.6/bigmemory/include/boost/config/stdlib/roguewave.hpp | 6 bigmemory-3.6/bigmemory/include/boost/config/stdlib/sgi.hpp | 1 bigmemory-3.6/bigmemory/include/boost/config/stdlib/stlport.hpp | 3 bigmemory-3.6/bigmemory/include/boost/config/stdlib/vacpp.hpp | 1 bigmemory-3.6/bigmemory/include/boost/config/suffix.hpp | 74 bigmemory-3.6/bigmemory/include/boost/cstdint.hpp | 2 bigmemory-3.6/bigmemory/include/boost/current_function.hpp |only bigmemory-3.6/bigmemory/include/boost/date_time/c_local_time_adjustor.hpp | 10 bigmemory-3.6/bigmemory/include/boost/date_time/c_time.hpp | 22 bigmemory-3.6/bigmemory/include/boost/date_time/compiler_config.hpp | 32 bigmemory-3.6/bigmemory/include/boost/date_time/constrained_value.hpp | 49 bigmemory-3.6/bigmemory/include/boost/date_time/date_duration.hpp | 27 bigmemory-3.6/bigmemory/include/boost/date_time/date_facet.hpp | 32 bigmemory-3.6/bigmemory/include/boost/date_time/date_generator_formatter.hpp | 42 bigmemory-3.6/bigmemory/include/boost/date_time/date_generator_parser.hpp | 103 - bigmemory-3.6/bigmemory/include/boost/date_time/date_generators.hpp | 32 bigmemory-3.6/bigmemory/include/boost/date_time/date_parsing.hpp | 77 bigmemory-3.6/bigmemory/include/boost/date_time/filetime_functions.hpp | 174 + bigmemory-3.6/bigmemory/include/boost/date_time/format_date_parser.hpp | 22 bigmemory-3.6/bigmemory/include/boost/date_time/gregorian/conversion.hpp | 27 bigmemory-3.6/bigmemory/include/boost/date_time/gregorian/greg_date.hpp | 13 bigmemory-3.6/bigmemory/include/boost/date_time/gregorian/greg_duration.hpp | 116 + bigmemory-3.6/bigmemory/include/boost/date_time/gregorian/greg_duration_types.hpp | 23 bigmemory-3.6/bigmemory/include/boost/date_time/gregorian/greg_facet.hpp | 35 bigmemory-3.6/bigmemory/include/boost/date_time/gregorian/greg_serialize.hpp | 6 bigmemory-3.6/bigmemory/include/boost/date_time/gregorian/greg_weekday.hpp | 4 bigmemory-3.6/bigmemory/include/boost/date_time/gregorian/gregorian_io.hpp | 15 bigmemory-3.6/bigmemory/include/boost/date_time/gregorian_calendar.ipp | 4 bigmemory-3.6/bigmemory/include/boost/date_time/int_adapter.hpp | 6 bigmemory-3.6/bigmemory/include/boost/date_time/local_time/local_date_time.hpp | 54 bigmemory-3.6/bigmemory/include/boost/date_time/local_time/local_time_io.hpp | 100 bigmemory-3.6/bigmemory/include/boost/date_time/local_time/posix_time_zone.hpp | 69 bigmemory-3.6/bigmemory/include/boost/date_time/local_time_adjustor.hpp | 29 bigmemory-3.6/bigmemory/include/boost/date_time/local_timezone_defs.hpp | 4 bigmemory-3.6/bigmemory/include/boost/date_time/microsec_time_clock.hpp | 154 - bigmemory-3.6/bigmemory/include/boost/date_time/period_parser.hpp | 32 bigmemory-3.6/bigmemory/include/boost/date_time/posix_time/conversion.hpp | 14 bigmemory-3.6/bigmemory/include/boost/date_time/posix_time/posix_time_config.hpp | 4 bigmemory-3.6/bigmemory/include/boost/date_time/posix_time/posix_time_io.hpp | 69 bigmemory-3.6/bigmemory/include/boost/date_time/string_parse_tree.hpp | 92 bigmemory-3.6/bigmemory/include/boost/date_time/strings_from_facet.hpp | 12 bigmemory-3.6/bigmemory/include/boost/date_time/time.hpp | 13 bigmemory-3.6/bigmemory/include/boost/date_time/time_defs.hpp | 14 bigmemory-3.6/bigmemory/include/boost/date_time/time_facet.hpp | 250 +- bigmemory-3.6/bigmemory/include/boost/date_time/time_formatting_streams.hpp | 13 bigmemory-3.6/bigmemory/include/boost/date_time/time_system_split.hpp | 20 bigmemory-3.6/bigmemory/include/boost/date_time/tz_db_base.hpp | 36 bigmemory-3.6/bigmemory/include/boost/date_time/wrapping_int.hpp | 36 bigmemory-3.6/bigmemory/include/boost/detail/atomic_count.hpp | 7 bigmemory-3.6/bigmemory/include/boost/detail/atomic_count_sync.hpp | 4 bigmemory-3.6/bigmemory/include/boost/detail/call_traits.hpp | 2 bigmemory-3.6/bigmemory/include/boost/detail/container_fwd.hpp |only bigmemory-3.6/bigmemory/include/boost/detail/dynamic_bitset.hpp | 91 bigmemory-3.6/bigmemory/include/boost/detail/endian.hpp | 6 bigmemory-3.6/bigmemory/include/boost/detail/sp_convertible.hpp | 2 bigmemory-3.6/bigmemory/include/boost/detail/sp_counted_base.hpp | 4 bigmemory-3.6/bigmemory/include/boost/detail/spinlock.hpp | 4 bigmemory-3.6/bigmemory/include/boost/detail/utf8_codecvt_facet.hpp | 2 bigmemory-3.6/bigmemory/include/boost/detail/workaround.hpp | 66 bigmemory-3.6/bigmemory/include/boost/exception/detail/error_info_impl.hpp |only bigmemory-3.6/bigmemory/include/boost/exception/detail/object_hex_dump.hpp | 4 bigmemory-3.6/bigmemory/include/boost/exception/detail/type_info.hpp |only bigmemory-3.6/bigmemory/include/boost/exception/diagnostic_information.hpp | 47 bigmemory-3.6/bigmemory/include/boost/exception/enable_current_exception.hpp | 150 - bigmemory-3.6/bigmemory/include/boost/exception/enable_error_info.hpp | 100 bigmemory-3.6/bigmemory/include/boost/exception/error_info.hpp | 12 bigmemory-3.6/bigmemory/include/boost/exception/exception.hpp | 398 +++ bigmemory-3.6/bigmemory/include/boost/exception/get_error_info.hpp |only bigmemory-3.6/bigmemory/include/boost/exception/info.hpp | 203 - bigmemory-3.6/bigmemory/include/boost/interprocess/allocators/allocator.hpp | 2 bigmemory-3.6/bigmemory/include/boost/interprocess/allocators/detail/adaptive_node_pool.hpp | 23 bigmemory-3.6/bigmemory/include/boost/interprocess/allocators/detail/node_pool.hpp | 15 bigmemory-3.6/bigmemory/include/boost/interprocess/anonymous_shared_memory.hpp | 12 bigmemory-3.6/bigmemory/include/boost/interprocess/containers/deque.hpp | 1025 ++++------ bigmemory-3.6/bigmemory/include/boost/interprocess/containers/detail/flat_tree.hpp | 218 +- bigmemory-3.6/bigmemory/include/boost/interprocess/containers/detail/node_alloc_holder.hpp | 151 - bigmemory-3.6/bigmemory/include/boost/interprocess/containers/detail/tree.hpp | 336 ++- bigmemory-3.6/bigmemory/include/boost/interprocess/containers/flat_map.hpp | 413 ++-- bigmemory-3.6/bigmemory/include/boost/interprocess/containers/flat_set.hpp | 283 ++ bigmemory-3.6/bigmemory/include/boost/interprocess/containers/list.hpp | 384 ++- bigmemory-3.6/bigmemory/include/boost/interprocess/containers/map.hpp | 262 +- bigmemory-3.6/bigmemory/include/boost/interprocess/containers/set.hpp | 267 ++ bigmemory-3.6/bigmemory/include/boost/interprocess/containers/slist.hpp | 384 ++- bigmemory-3.6/bigmemory/include/boost/interprocess/containers/string.hpp | 81 bigmemory-3.6/bigmemory/include/boost/interprocess/containers/vector.hpp | 830 ++++---- bigmemory-3.6/bigmemory/include/boost/interprocess/detail/advanced_insert_int.hpp |only bigmemory-3.6/bigmemory/include/boost/interprocess/detail/algorithms.hpp | 11 bigmemory-3.6/bigmemory/include/boost/interprocess/detail/atomic.hpp | 8 bigmemory-3.6/bigmemory/include/boost/interprocess/detail/config_begin.hpp | 4 bigmemory-3.6/bigmemory/include/boost/interprocess/detail/intersegment_ptr.hpp | 69 bigmemory-3.6/bigmemory/include/boost/interprocess/detail/managed_memory_impl.hpp | 10 bigmemory-3.6/bigmemory/include/boost/interprocess/detail/managed_multi_shared_memory.hpp | 4 bigmemory-3.6/bigmemory/include/boost/interprocess/detail/managed_open_or_create_impl.hpp | 8 bigmemory-3.6/bigmemory/include/boost/interprocess/detail/move.hpp | 12 bigmemory-3.6/bigmemory/include/boost/interprocess/detail/named_proxy.hpp | 193 + bigmemory-3.6/bigmemory/include/boost/interprocess/detail/os_file_functions.hpp | 13 bigmemory-3.6/bigmemory/include/boost/interprocess/detail/os_thread_functions.hpp | 60 bigmemory-3.6/bigmemory/include/boost/interprocess/detail/preprocessor.hpp |only bigmemory-3.6/bigmemory/include/boost/interprocess/detail/segment_manager_helper.hpp | 30 bigmemory-3.6/bigmemory/include/boost/interprocess/detail/type_traits.hpp | 41 bigmemory-3.6/bigmemory/include/boost/interprocess/detail/utilities.hpp | 161 + bigmemory-3.6/bigmemory/include/boost/interprocess/detail/variadic_templates_tools.hpp |only bigmemory-3.6/bigmemory/include/boost/interprocess/detail/win32_api.hpp | 20 bigmemory-3.6/bigmemory/include/boost/interprocess/errors.hpp | 2 bigmemory-3.6/bigmemory/include/boost/interprocess/file_mapping.hpp | 64 bigmemory-3.6/bigmemory/include/boost/interprocess/interprocess_fwd.hpp | 5 bigmemory-3.6/bigmemory/include/boost/interprocess/ipc/message_queue.hpp | 50 bigmemory-3.6/bigmemory/include/boost/interprocess/managed_external_buffer.hpp | 39 bigmemory-3.6/bigmemory/include/boost/interprocess/managed_heap_memory.hpp | 34 bigmemory-3.6/bigmemory/include/boost/interprocess/managed_mapped_file.hpp | 32 bigmemory-3.6/bigmemory/include/boost/interprocess/managed_shared_memory.hpp | 34 bigmemory-3.6/bigmemory/include/boost/interprocess/managed_windows_shared_memory.hpp | 25 bigmemory-3.6/bigmemory/include/boost/interprocess/mapped_region.hpp | 44 bigmemory-3.6/bigmemory/include/boost/interprocess/mem_algo/detail/mem_algo_common.hpp | 37 bigmemory-3.6/bigmemory/include/boost/interprocess/mem_algo/detail/multi_simple_seq_fit_impl.hpp | 72 bigmemory-3.6/bigmemory/include/boost/interprocess/mem_algo/detail/simple_seq_fit_impl.hpp | 75 bigmemory-3.6/bigmemory/include/boost/interprocess/mem_algo/rbtree_best_fit.hpp | 85 bigmemory-3.6/bigmemory/include/boost/interprocess/offset_ptr.hpp | 16 bigmemory-3.6/bigmemory/include/boost/interprocess/segment_manager.hpp | 88 bigmemory-3.6/bigmemory/include/boost/interprocess/shared_memory_object.hpp | 18 bigmemory-3.6/bigmemory/include/boost/interprocess/smart_ptr/detail/sp_counted_impl.hpp | 3 bigmemory-3.6/bigmemory/include/boost/interprocess/smart_ptr/shared_ptr.hpp | 4 bigmemory-3.6/bigmemory/include/boost/interprocess/smart_ptr/unique_ptr.hpp | 12 bigmemory-3.6/bigmemory/include/boost/interprocess/smart_ptr/weak_ptr.hpp | 2 bigmemory-3.6/bigmemory/include/boost/interprocess/sync/emulation/interprocess_condition.hpp | 16 bigmemory-3.6/bigmemory/include/boost/interprocess/sync/emulation/interprocess_mutex.hpp | 10 bigmemory-3.6/bigmemory/include/boost/interprocess/sync/emulation/interprocess_recursive_mutex.hpp | 22 bigmemory-3.6/bigmemory/include/boost/interprocess/sync/emulation/interprocess_semaphore.hpp | 4 bigmemory-3.6/bigmemory/include/boost/interprocess/sync/file_lock.hpp | 77 bigmemory-3.6/bigmemory/include/boost/interprocess/sync/interprocess_condition.hpp | 12 bigmemory-3.6/bigmemory/include/boost/interprocess/sync/interprocess_mutex.hpp | 2 bigmemory-3.6/bigmemory/include/boost/interprocess/sync/interprocess_recursive_mutex.hpp | 9 bigmemory-3.6/bigmemory/include/boost/interprocess/sync/interprocess_semaphore.hpp | 4 bigmemory-3.6/bigmemory/include/boost/interprocess/sync/interprocess_upgradable_mutex.hpp | 12 bigmemory-3.6/bigmemory/include/boost/interprocess/sync/lock_options.hpp | 22 bigmemory-3.6/bigmemory/include/boost/interprocess/sync/named_condition.hpp | 16 bigmemory-3.6/bigmemory/include/boost/interprocess/sync/named_mutex.hpp | 16 bigmemory-3.6/bigmemory/include/boost/interprocess/sync/named_recursive_mutex.hpp | 8 bigmemory-3.6/bigmemory/include/boost/interprocess/sync/named_semaphore.hpp | 16 bigmemory-3.6/bigmemory/include/boost/interprocess/sync/named_upgradable_mutex.hpp | 26 bigmemory-3.6/bigmemory/include/boost/interprocess/sync/posix/interprocess_mutex.hpp | 4 bigmemory-3.6/bigmemory/include/boost/interprocess/sync/posix/interprocess_recursive_mutex.hpp | 4 bigmemory-3.6/bigmemory/include/boost/interprocess/sync/posix/interprocess_semaphore.hpp | 8 bigmemory-3.6/bigmemory/include/boost/interprocess/sync/posix/semaphore_wrapper.hpp | 2 bigmemory-3.6/bigmemory/include/boost/interprocess/sync/scoped_lock.hpp | 29 bigmemory-3.6/bigmemory/include/boost/interprocess/sync/sharable_lock.hpp | 18 bigmemory-3.6/bigmemory/include/boost/interprocess/sync/upgradable_lock.hpp | 24 bigmemory-3.6/bigmemory/include/boost/interprocess/windows_shared_memory.hpp | 11 bigmemory-3.6/bigmemory/include/boost/mpl/O1_size.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/O1_size_fwd.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/accumulate.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/advance.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/advance_fwd.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/alias.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/always.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/and.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/apply.hpp | 12 bigmemory-3.6/bigmemory/include/boost/mpl/apply_fwd.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/apply_wrap.hpp | 46 bigmemory-3.6/bigmemory/include/boost/mpl/arg.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/arg_fwd.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/arithmetic.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/as_sequence.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/assert.hpp | 12 bigmemory-3.6/bigmemory/include/boost/mpl/at.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/at_fwd.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/O1_size_impl.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/adl_barrier.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/advance_backward.hpp | 12 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/advance_forward.hpp | 12 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/apply_1st.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/arg_typedef.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/arithmetic_op.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/arity.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/arity_spec.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/at_impl.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/back_impl.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/basic_bind.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/begin_end_impl.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/clear_impl.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/common_name_wknd.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/comparison_op.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/config/adl.hpp | 8 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/config/arrays.hpp | 8 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/config/bcc.hpp |only bigmemory-3.6/bigmemory/include/boost/mpl/aux_/config/bind.hpp | 8 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/config/compiler.hpp | 14 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/config/ctps.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/config/dependent_nttp.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/config/dmc_ambiguous_ctps.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/config/dtp.hpp | 10 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/config/eti.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/config/forwarding.hpp | 8 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/config/gcc.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/config/has_apply.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/config/has_xxx.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/config/integral.hpp | 8 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/config/intel.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/config/lambda.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/config/msvc.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/config/msvc_typename.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/config/nttp.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/config/operators.hpp | 8 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/config/overload_resolution.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/config/pp_counter.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/config/preprocessor.hpp | 8 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/config/static_constant.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/config/ttp.hpp | 8 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/config/typeof.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/config/use_preprocessed.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/config/workaround.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/contains_impl.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/count_args.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/count_impl.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/empty_impl.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/erase_impl.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/erase_key_impl.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/filter_iter.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/fold_impl.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/fold_impl_body.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/fold_op.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/fold_pred.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/front_impl.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/full_lambda.hpp | 12 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/has_apply.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/has_begin.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/has_key_impl.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/has_rebind.hpp | 10 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/has_size.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/has_tag.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/has_type.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/include_preprocessed.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/insert_impl.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/insert_range_impl.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/inserter_algorithm.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/integral_wrapper.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/is_msvc_eti_arg.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/iter_apply.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/iter_fold_if_impl.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/iter_fold_impl.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/iter_push_front.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/joint_iter.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/lambda_arity_param.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/lambda_no_ctps.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/lambda_spec.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/lambda_support.hpp | 8 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/largest_int.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/logical_op.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/msvc_dtw.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/msvc_eti_base.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/msvc_is_class.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/msvc_never_true.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/msvc_type.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/na.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/na_assert.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/na_fwd.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/na_spec.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/nested_type_wknd.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/nttp_decl.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/numeric_cast_utils.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/numeric_op.hpp | 12 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/order_impl.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/overload_names.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/partition_op.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/pop_back_impl.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/pop_front_impl.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/preprocessed/bcc/advance_backward.hpp | 2 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/preprocessed/bcc/advance_forward.hpp | 2 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/preprocessed/bcc/and.hpp | 2 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/preprocessed/bcc/apply.hpp | 2 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/preprocessed/bcc/apply_fwd.hpp | 2 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/preprocessed/bcc/apply_wrap.hpp | 21 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/preprocessed/bcc/arg.hpp | 2 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/preprocessed/bcc/basic_bind.hpp | 2 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/preprocessed/bcc/bind.hpp | 2 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/preprocessed/bcc/bind_fwd.hpp | 2 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/preprocessed/bcc/bitand.hpp | 2 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/preprocessed/bcc/bitor.hpp | 2 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/preprocessed/bcc/bitxor.hpp | 2 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bigmemory-3.6/bigmemory/include/boost/mpl/map/aux_/map0.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/map/aux_/numbered.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/map/aux_/size_impl.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/map/aux_/tag.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/map/aux_/value_type_impl.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/map/map0.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/map/map10.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/map/map20.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/map/map30.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/map/map40.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/map/map50.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/math/fixed_c.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/math/is_even.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/math/rational_c.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/max.hpp | 6 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| 6 bigmemory-3.6/bigmemory/include/boost/mpl/prior.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/protect.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/push_back.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/push_back_fwd.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/push_front.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/push_front_fwd.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/quote.hpp | 25 bigmemory-3.6/bigmemory/include/boost/mpl/range_c.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/remove.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/remove_if.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/replace.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/replace_if.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/reverse.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/reverse_fold.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/reverse_iter_fold.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/same_as.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/sequence_tag.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/sequence_tag_fwd.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/set.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/set/aux_/at_impl.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/set/aux_/begin_end_impl.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/set/aux_/clear_impl.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/set/aux_/empty_impl.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/set/aux_/erase_impl.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/set/aux_/erase_key_impl.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/set/aux_/has_key_impl.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/set/aux_/include_preprocessed.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/set/aux_/insert_impl.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/set/aux_/item.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/set/aux_/iterator.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/set/aux_/key_type_impl.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/set/aux_/numbered.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/set/aux_/numbered_c.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/set/aux_/set0.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/set/aux_/size_impl.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/set/aux_/tag.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/set/aux_/value_type_impl.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/set/set0.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/set/set0_c.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/set/set10.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/set/set10_c.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/set/set20.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/set/set20_c.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/set/set30.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/set/set30_c.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/set/set40.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/set/set40_c.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/set/set50.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/set/set50_c.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/set_c.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/shift_left.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/shift_right.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/single_view.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/size.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/size_fwd.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/size_t.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/size_t_fwd.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/sizeof.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/sort.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/stable_partition.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/switch.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/tag.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/times.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/transform.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/transform_view.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/unique.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/unpack_args.hpp | 12 bigmemory-3.6/bigmemory/include/boost/mpl/upper_bound.hpp | 8 bigmemory-3.6/bigmemory/include/boost/mpl/value_type.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/value_type_fwd.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/vector.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/vector/aux_/O1_size.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/vector/aux_/at.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/vector/aux_/back.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/vector/aux_/begin_end.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/vector/aux_/clear.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/vector/aux_/empty.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/vector/aux_/front.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/vector/aux_/include_preprocessed.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/vector/aux_/item.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/vector/aux_/iterator.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/vector/aux_/numbered.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/vector/aux_/numbered_c.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/vector/aux_/pop_back.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/vector/aux_/pop_front.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/vector/aux_/push_back.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/vector/aux_/push_front.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/vector/aux_/size.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/vector/aux_/tag.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/vector/aux_/vector0.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/vector/vector0.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/vector/vector0_c.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/vector/vector10.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/vector/vector10_c.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/vector/vector20.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/vector/vector20_c.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/vector/vector30.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/vector/vector30_c.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/vector/vector40.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/vector/vector40_c.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/vector/vector50.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/vector/vector50_c.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/vector_c.hpp | 9 bigmemory-3.6/bigmemory/include/boost/mpl/void.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/void_fwd.hpp | 6 bigmemory-3.6/bigmemory/include/boost/mpl/zip_view.hpp | 6 bigmemory-3.6/bigmemory/include/boost/numeric/conversion/converter_policies.hpp | 2 bigmemory-3.6/bigmemory/include/boost/numeric/interval/arith2.hpp | 2 bigmemory-3.6/bigmemory/include/boost/numeric/interval/detail/bugs.hpp | 2 bigmemory-3.6/bigmemory/include/boost/numeric/interval/rounded_arith.hpp | 2 bigmemory-3.6/bigmemory/include/boost/numeric/interval/rounded_transc.hpp | 2 bigmemory-3.6/bigmemory/include/boost/numeric/ublas/functional.hpp | 339 +-- bigmemory-3.6/bigmemory/include/boost/numeric/ublas/hermitian.hpp | 16 bigmemory-3.6/bigmemory/include/boost/numeric/ublas/symmetric.hpp | 8 bigmemory-3.6/bigmemory/include/boost/numeric/ublas/traits.hpp | 24 bigmemory-3.6/bigmemory/include/boost/numeric/ublas/triangular.hpp | 32 bigmemory-3.6/bigmemory/include/boost/random/binomial_distribution.hpp | 4 bigmemory-3.6/bigmemory/include/boost/random/cauchy_distribution.hpp | 4 bigmemory-3.6/bigmemory/include/boost/random/exponential_distribution.hpp | 4 bigmemory-3.6/bigmemory/include/boost/random/gamma_distribution.hpp | 4 bigmemory-3.6/bigmemory/include/boost/random/geometric_distribution.hpp | 4 bigmemory-3.6/bigmemory/include/boost/random/lagged_fibonacci.hpp | 6 bigmemory-3.6/bigmemory/include/boost/random/lognormal_distribution.hpp | 4 bigmemory-3.6/bigmemory/include/boost/random/normal_distribution.hpp | 4 bigmemory-3.6/bigmemory/include/boost/random/poisson_distribution.hpp | 4 bigmemory-3.6/bigmemory/include/boost/random/subtract_with_carry.hpp | 6 bigmemory-3.6/bigmemory/include/boost/random/triangle_distribution.hpp | 4 bigmemory-3.6/bigmemory/include/boost/random/uniform_int.hpp | 105 - bigmemory-3.6/bigmemory/include/boost/throw_exception.hpp | 16 bigmemory-3.6/bigmemory/include/boost/type_traits/add_pointer.hpp | 2 bigmemory-3.6/bigmemory/include/boost/type_traits/alignment_of.hpp | 13 bigmemory-3.6/bigmemory/include/boost/type_traits/config.hpp | 2 bigmemory-3.6/bigmemory/include/boost/type_traits/detail/ice_eq.hpp | 36 bigmemory-3.6/bigmemory/include/boost/type_traits/extent.hpp | 13 bigmemory-3.6/bigmemory/include/boost/type_traits/intrinsics.hpp | 41 bigmemory-3.6/bigmemory/include/boost/type_traits/is_arithmetic.hpp | 8 bigmemory-3.6/bigmemory/include/boost/type_traits/is_array.hpp | 5 bigmemory-3.6/bigmemory/include/boost/type_traits/is_base_and_derived.hpp | 4 bigmemory-3.6/bigmemory/include/boost/type_traits/is_class.hpp | 3 bigmemory-3.6/bigmemory/include/boost/type_traits/is_compound.hpp | 6 bigmemory-3.6/bigmemory/include/boost/type_traits/is_const.hpp | 8 bigmemory-3.6/bigmemory/include/boost/type_traits/is_function.hpp | 10 bigmemory-3.6/bigmemory/include/boost/type_traits/is_fundamental.hpp | 4 bigmemory-3.6/bigmemory/include/boost/type_traits/is_integral.hpp | 5 bigmemory-3.6/bigmemory/include/boost/type_traits/is_member_function_pointer.hpp | 4 bigmemory-3.6/bigmemory/include/boost/type_traits/is_member_pointer.hpp | 4 bigmemory-3.6/bigmemory/include/boost/type_traits/is_pointer.hpp | 4 bigmemory-3.6/bigmemory/include/boost/type_traits/is_reference.hpp | 6 bigmemory-3.6/bigmemory/include/boost/type_traits/is_signed.hpp | 8 bigmemory-3.6/bigmemory/include/boost/type_traits/is_unsigned.hpp | 9 bigmemory-3.6/bigmemory/include/boost/type_traits/is_void.hpp | 5 bigmemory-3.6/bigmemory/include/boost/type_traits/is_volatile.hpp | 6 bigmemory-3.6/bigmemory/include/boost/type_traits/rank.hpp | 8 bigmemory-3.6/bigmemory/include/boost/type_traits/remove_all_extents.hpp | 2 bigmemory-3.6/bigmemory/include/boost/type_traits/remove_bounds.hpp | 2 bigmemory-3.6/bigmemory/include/boost/type_traits/remove_extent.hpp | 2 bigmemory-3.6/bigmemory/include/boost/type_traits/remove_reference.hpp | 2 bigmemory-3.6/bigmemory/include/boost/type_traits/type_with_alignment.hpp | 2 bigmemory-3.6/bigmemory/man/big.matrix.Rd | 11 bigmemory-3.6/bigmemory/man/bigmemory-package.Rd | 4 bigmemory-3.6/bigmemory/src/BigMatrix.cpp | 830 ++++---- bigmemory-3.6/bigmemory/src/BigMatrix.h | 1 bigmemory-3.6/bigmemory/src/BigMemoryMutex.cpp | 170 + bigmemory-3.6/bigmemory/src/BigMemoryMutex.h | 1 bigmemory-3.6/bigmemory/src/CbigmemoRy.cpp | 19 bigmemory-3.6/bigmemory/src/SharedCounter.cpp | 1 bigmemory-3.6/bigmemory/src/SharedCounter.h | 1 748 files changed, 8906 insertions(+), 5911 deletions(-)
Author: Jean Thioulouse
Diff between ade4TkGUI versions 0.2-3 dated 2008-09-21 and 0.2-4 dated 2009-05-04
Title: ade4 Tcl/Tk Graphical User Interface
Description: a Tcl/Tk GUI for some basic functions in the ade4 package
DESCRIPTION | 16 +
R/ade4TkGUI.R | 472 +++++++++++++++++++++++++++++-----------------------------
R/ordiClust.R | 4
3 files changed, 249 insertions(+), 243 deletions(-)
Author: David Hajage
Title: Export R objects to asciidoc or txt2tags
Description: Coerce R object to asciidoc or txt2tags syntax. Package
comes with two drivers for Sweave.
Diff between ascii versions 0.1.1 dated 2009-04-14 and 0.1.2 dated 2009-05-04
DESCRIPTION | 8 ++++---- NEWS | 7 +++++++ R/asciiAnova.r | 22 +++++++++++----------- R/asciiDataFrame.r | 8 ++++---- R/asciiDefault.r | 4 ++-- R/asciiDensity.r | 4 ++-- R/asciiGlm.r | 8 ++++---- R/asciiHmisc.r | 11 +++++++++-- R/asciiHtest.r | 4 ++-- R/asciiList.r | 4 ++-- R/asciiLm.r | 8 ++++---- R/asciiMatrix.r | 4 ++-- R/asciiPrcomp.r | 8 ++++---- R/asciiSmoothSpline.r | 4 ++-- R/asciiSummaryTable.r | 4 ++-- R/asciiSurvival.r | 10 +++++----- R/asciiTable.r | 4 ++-- R/asciiTs.r | 4 ++-- R/asciiVector.r | 16 ++++++++-------- R/misc.r | 48 +++++++++++++++++++++++++++++++++++++++--------- R/show.r | 12 ++++++++---- Rplots.pdf |only index-ggplot2.pdf |only man/ascii.Rd | 14 ++++++++++---- 24 files changed, 135 insertions(+), 81 deletions(-)
Author: Micah Altman, Jeff Gill, Michael P. McDonald
Title: Tools for testing and improving accuracy of statistical results.
Description: This is a suite of tools designed to test and improve the
accuracy of statistical computation, including: Summarization
of the sensitivity of linear and non-linear models (lm, glm,
mle, nls) to measurement and numerical error; Sensitivity
analysis of dozens of models as run through Zelig; A
generalized cholesky method for correcting non-invertable
Hessians; Tests for the global optimality of non-linear
regression and maximum likelihood results; Tools for obtaining
true random numbers using entropy collected from the system
and/or entropy servers on the internet; A method for converting
floating point numbers to normalized fractions; Benchmark data
for checking the accuracy of basic distribution functions.
Diff between accuracy versions 1.31 dated 2008-11-17 and 1.32 dated 2009-05-04
CHANGELOG | 2 DESCRIPTION | 53 - R/trueRandom.R | 30 inst/doc/Rplots.pdf | 1650 +++++++++++++++++----------------- inst/doc/accuracy_vignette-plot1a.eps | 564 +++++------ inst/doc/accuracy_vignette-plot1a.pdf | 588 ++++++------ inst/doc/accuracy_vignette-plot2a.eps | 623 ++++++------ inst/doc/accuracy_vignette-plot2a.pdf | 1022 ++++++++++----------- inst/doc/accuracy_vignette.log | 4 inst/doc/accuracy_vignette.pdf |binary inst/doc/accuracy_vignette.tex | 24 man/dehaan.Rd | 8 man/disttest.Rd | 4 man/pzelig.Rd | 2 man/starr.Rd | 10 15 files changed, 2317 insertions(+), 2267 deletions(-)
Author: Sundar Dorai-Raj, Romain Francois and Spencer Graves
Title: RSiteSearch
Description: Alternative interfaces to RSiteSearch
Diff between RSiteSearch versions 0.1-3 dated 2009-04-29 and 0.1-5 dated 2009-05-04
DESCRIPTION | 8 ++++---- R/HTML.RSiteSearch.R | 10 +++++++++- R/RSiteSearch.function.R | 10 +++++++++- man/HTML.Rd | 5 ++--- 4 files changed, 24 insertions(+), 9 deletions(-)
Author: Renan Cortes
Diff between RcmdrPlugin.qcc versions 1.0-1 dated 2009-01-02 and 1.0-2 dated 2009-05-04
More information about RcmdrPlugin.qcc at CRAN
Title: Rcmdr qcc Plug-In
Description: This package provides an Rcmdr "plug-in" based on the qcc
package, and it provides an integration between the user and
the tools of SPC.
DESCRIPTION | 31 ++++++++++--------
R/RcmdrPlugin.qcc.r | 48 ++++++++++++++--------------
inst/etc/menus.txt | 88 ++++++++++++++++++++++++++--------------------------
3 files changed, 86 insertions(+), 81 deletions(-)
Permanent link
Author: M. Lado, A. Mendez, D. Olivieri, L. Rodriguez-Linares, X. Vila
Title: Heart rate variability analysis of ECG data
Description: This is a package for developing heart rate variability
studies of ECG records
Diff between RHRV versions 1.0 dated 2008-10-28 and 1.6.2 dated 2009-05-04
RHRV-1.0/RHRV/R/build_hr.R |only RHRV-1.0/RHRV/R/hr_filter.R |only RHRV-1.0/RHRV/R/hr_interpolator.R |only RHRV-1.0/RHRV/R/load_beat_file.R |only RHRV-1.0/RHRV/R/plot_hr.R |only RHRV-1.0/RHRV/R/plot_power_band.R |only RHRV-1.0/RHRV/R/plot_spectrogram.R |only RHRV-1.0/RHRV/R/power_band.R |only RHRV-1.0/RHRV/R/pw_from_file.R |only RHRV-1.0/RHRV/R/spectrogram.R |only RHRV-1.0/RHRV/R/wfdb_import.R |only RHRV-1.0/RHRV/man/build_hr.Rd |only RHRV-1.0/RHRV/man/hr_filter.Rd |only RHRV-1.0/RHRV/man/hr_interpolator.Rd |only RHRV-1.0/RHRV/man/load_beat_file.Rd |only RHRV-1.0/RHRV/man/plot_hr.Rd |only RHRV-1.0/RHRV/man/plot_power_band.Rd |only RHRV-1.0/RHRV/man/plot_spectrogram.Rd |only RHRV-1.0/RHRV/man/power_band.Rd |only RHRV-1.0/RHRV/man/pw_from_file.Rd |only RHRV-1.0/RHRV/man/spectrogram.Rd |only RHRV-1.0/RHRV/man/wfdb_import.Rd |only RHRV-1.6.2/RHRV/DESCRIPTION | 24 ++++++++++-------- RHRV-1.6.2/RHRV/R/BuildNIHR.R |only RHRV-1.6.2/RHRV/R/CalculatePowerBand.R |only RHRV-1.6.2/RHRV/R/CalculateSpectrogram.R |only RHRV-1.6.2/RHRV/R/CreateData.R |only RHRV-1.6.2/RHRV/R/EditNIHR.R |only RHRV-1.6.2/RHRV/R/FilterNIHR.R |only RHRV-1.6.2/RHRV/R/InterpolateNIHR.R |only RHRV-1.6.2/RHRV/R/LoadBeatAscii.R |only RHRV-1.6.2/RHRV/R/LoadBeatWFDB.R |only RHRV-1.6.2/RHRV/R/LoadEpisodesAscii.R |only RHRV-1.6.2/RHRV/R/LoadHeaderWFDB.R |only RHRV-1.6.2/RHRV/R/PlotHR.R |only RHRV-1.6.2/RHRV/R/PlotNIHR.R |only RHRV-1.6.2/RHRV/R/PlotPowerBand.R |only RHRV-1.6.2/RHRV/R/PlotSpectrogram.R |only RHRV-1.6.2/RHRV/R/ReadFromFile.R |only RHRV-1.6.2/RHRV/R/WriteToFile.R |only RHRV-1.6.2/RHRV/man/BuildNIHR.Rd |only RHRV-1.6.2/RHRV/man/CalculatePowerBand.Rd |only RHRV-1.6.2/RHRV/man/CalculateSpectrogram.Rd |only RHRV-1.6.2/RHRV/man/CreateData.Rd |only RHRV-1.6.2/RHRV/man/EditNIHR.Rd |only RHRV-1.6.2/RHRV/man/FilterNIHR.Rd |only RHRV-1.6.2/RHRV/man/InterpolateNIHR.Rd |only RHRV-1.6.2/RHRV/man/LoadBeatAscii.Rd |only RHRV-1.6.2/RHRV/man/LoadBeatWFDB.Rd |only RHRV-1.6.2/RHRV/man/LoadEpisodesAscii.Rd |only RHRV-1.6.2/RHRV/man/LoadHeaderWFDB.Rd |only RHRV-1.6.2/RHRV/man/PlotHR.Rd |only RHRV-1.6.2/RHRV/man/PlotNIHR.Rd |only RHRV-1.6.2/RHRV/man/PlotPowerBand.Rd |only RHRV-1.6.2/RHRV/man/PlotSpectrogram.Rd |only RHRV-1.6.2/RHRV/man/RHRV-package.Rd | 37 ++++++++++++---------------- RHRV-1.6.2/RHRV/man/ReadFromFile.Rd |only RHRV-1.6.2/RHRV/man/WriteToFile.Rd |only 58 files changed, 31 insertions(+), 30 deletions(-)
Author: Ulrike Groemping
Title: Fractional Factorial designs with 2-level factors
Description: This package creates regular and non-regular Fractional
Factorial designs. Furthermore, analysis tools for Fractional
Factorial designs with 2-level factors are offered (main
effects and interaction plots for all factors simultaneously,
cube plot for looking at the simultaneous effects of three
factors, full or half normal plot, alias structure in a more
readable format than with the built-in function alias). The
package is currently subject to intensive development;
structures and even function names may change in the future.
Diff between FrF2 versions 0.91-1 dated 2009-04-15 and 0.92-1 dated 2009-05-04
FrF2-0.91-1/FrF2/COPYING |only FrF2-0.91-1/FrF2/COPYRIGHT |only FrF2-0.91-1/FrF2/inst/doc |only FrF2-0.92-1/FrF2/DESCRIPTION | 10 FrF2-0.92-1/FrF2/LICENSE |only FrF2-0.92-1/FrF2/NAMESPACE | 8 FrF2-0.92-1/FrF2/R/DesignAccessors.R |only FrF2-0.92-1/FrF2/R/FrF2.R | 711 +++++++++++++++++++++++++---- FrF2-0.92-1/FrF2/R/WP.check.R |only FrF2-0.92-1/FrF2/R/blockcheck.R |only FrF2-0.92-1/FrF2/R/blockpick.R |only FrF2-0.92-1/FrF2/R/blockpick.big.R |only FrF2-0.92-1/FrF2/R/cols.R |only FrF2-0.92-1/FrF2/R/contr.FrF2.R |only FrF2-0.92-1/FrF2/R/estimable2fis.R | 29 - FrF2-0.92-1/FrF2/R/fac.design.R | 6 FrF2-0.92-1/FrF2/R/leftadjust.R |only FrF2-0.92-1/FrF2/R/pb.R | 10 FrF2-0.92-1/FrF2/R/print.catlg.R |only FrF2-0.92-1/FrF2/R/splitpick.R |only FrF2-0.92-1/FrF2/R/sysdata.rda |binary FrF2-0.92-1/FrF2/R/utilcat.R | 53 +- FrF2-0.92-1/FrF2/R/utilperm.R |only FrF2-0.92-1/FrF2/inst/NEWS | 42 + FrF2-0.92-1/FrF2/man/CatalogueAccessors.Rd | 99 +++- FrF2-0.92-1/FrF2/man/FrF2-package.Rd | 22 FrF2-0.92-1/FrF2/man/FrF2.Rd | 561 +++++++++++++++++++--- FrF2-0.92-1/FrF2/man/StructurePickers.Rd |only FrF2-0.92-1/FrF2/man/blockpick.Rd |only FrF2-0.92-1/FrF2/man/class-design.Rd | 78 ++- FrF2-0.92-1/FrF2/man/pb.Rd | 9 FrF2-0.92-1/FrF2/man/utilitiesCat.Rd | 11 FrF2-0.92-1/FrF2/tests |only 33 files changed, 1392 insertions(+), 257 deletions(-)
Author: Jae. H. Kim
Title: Bootstrap Prediction Intervals and Bias-Corrected Forecasting
Description: Bias-Corrected Forecasting and Bootstrap Prediction
Intervals for Autoregressive Time Series
Diff between BootPR versions 0.56 dated 2008-06-12 and 0.57 dated 2009-05-04
BootPR-0.56/BootPR/R/fuller_1.R |only BootPR-0.56/BootPR/R/fullert_1.R |only BootPR-0.57/BootPR/DESCRIPTION | 25 ++++++++++++++----------- BootPR-0.57/BootPR/R/AR.Fore.R | 2 +- BootPR-0.57/BootPR/R/AR.ForeB.R | 2 +- BootPR-0.57/BootPR/R/AR.order.R | 2 +- BootPR-0.57/BootPR/R/ART.Fore.R | 2 +- BootPR-0.57/BootPR/R/ART.ForeB.R | 2 +- BootPR-0.57/BootPR/R/ART.order.R | 2 +- BootPR-0.57/BootPR/R/ARnames.R |only BootPR-0.57/BootPR/R/ARnames2.R |only BootPR-0.57/BootPR/R/ARorder.R | 4 +++- BootPR-0.57/BootPR/R/Andrews.Chen.R | 5 ++++- BootPR-0.57/BootPR/R/Andrews.Chen1.R | 2 +- BootPR-0.57/BootPR/R/Andrews.Chen2.R | 2 +- BootPR-0.57/BootPR/R/Boot.PI.R | 2 +- BootPR-0.57/BootPR/R/BootAfterBoot.PI.R | 2 +- BootPR-0.57/BootPR/R/BootAfterBootPI.R | 4 +++- BootPR-0.57/BootPR/R/BootAfterBootT.PI.R | 2 +- BootPR-0.57/BootPR/R/BootBC.R | 4 +++- BootPR-0.57/BootPR/R/BootPI.R | 4 +++- BootPR-0.57/BootPR/R/BootT.PI.R | 2 +- BootPR-0.57/BootPR/R/Bootstrap.R | 4 ++-- BootPR-0.57/BootPR/R/BootstrapB.R | 2 +- BootPR-0.57/BootPR/R/BootstrapT.R | 4 ++-- BootPR-0.57/BootPR/R/BootstrapTB.R | 2 +- BootPR-0.57/BootPR/R/FFuller.R |only BootPR-0.57/BootPR/R/FFullerT.R |only BootPR-0.57/BootPR/R/LS.AR.R | 6 +++++- BootPR-0.57/BootPR/R/LSE.R | 2 +- BootPR-0.57/BootPR/R/LSET.R | 2 +- BootPR-0.57/BootPR/R/LSM.R | 2 +- BootPR-0.57/BootPR/R/LSMB.R | 2 +- BootPR-0.57/BootPR/R/LSMBT.R | 2 +- BootPR-0.57/BootPR/R/LSMT.R | 2 +- BootPR-0.57/BootPR/R/OLS.AR.R | 2 +- BootPR-0.57/BootPR/R/OLS.ART.R | 3 +-- BootPR-0.57/BootPR/R/Plot.Fore.R | 3 ++- BootPR-0.57/BootPR/R/Plot.PI.R | 3 ++- BootPR-0.57/BootPR/R/RE.LSMT.R | 2 +- BootPR-0.57/BootPR/R/RE.LSMTB.R | 2 +- BootPR-0.57/BootPR/R/RESID.R | 2 +- BootPR-0.57/BootPR/R/RESIDT.R | 2 +- BootPR-0.57/BootPR/R/Roy.Fuller.R | 8 +++++--- BootPR-0.57/BootPR/R/RoyFuller.PI.R | 4 +++- BootPR-0.57/BootPR/R/RoyFuller1.PI.R | 2 +- BootPR-0.57/BootPR/R/RoyFuller1T.PI.R | 2 +- BootPR-0.57/BootPR/R/RoyFuller2.PI.R | 2 +- BootPR-0.57/BootPR/R/RoyFuller2T.PI.R | 2 +- BootPR-0.57/BootPR/R/Shaman.Stine.R | 2 +- BootPR-0.57/BootPR/R/Shaman.StineB.R | 2 +- BootPR-0.57/BootPR/R/Shaman.StineBT.R | 2 +- BootPR-0.57/BootPR/R/Shaman.StineT.R | 2 +- BootPR-0.57/BootPR/R/ShamanStine.PI.R | 4 +++- BootPR-0.57/BootPR/R/ShamanStine1.PI.R | 2 +- BootPR-0.57/BootPR/R/ShamanStine1T.PI.R | 2 +- BootPR-0.57/BootPR/R/ShamanStine2.PI.R | 2 +- BootPR-0.57/BootPR/R/ShamanStine2T.PI.R | 2 +- BootPR-0.57/BootPR/R/Stine.R | 2 +- BootPR-0.57/BootPR/R/Stine.Shaman.R | 4 +++- BootPR-0.57/BootPR/R/StineT.R | 2 +- BootPR-0.57/BootPR/R/adjust.R | 4 +++- BootPR-0.57/BootPR/R/adjust2.R | 7 ++----- BootPR-0.57/BootPR/R/alpha.u.R | 2 +- BootPR-0.57/BootPR/R/alpha.u0.R | 2 +- BootPR-0.57/BootPR/R/alphas.R | 2 +- BootPR-0.57/BootPR/R/alphas0.R | 2 +- BootPR-0.57/BootPR/R/arlevel.R | 2 +- BootPR-0.57/BootPR/R/estmf.R | 2 +- BootPR-0.57/BootPR/R/estmf0.R | 2 +- BootPR-0.57/BootPR/R/fuller.R | 2 +- BootPR-0.57/BootPR/R/fuller1.R | 2 +- BootPR-0.57/BootPR/R/fullerT.R | 2 +- BootPR-0.57/BootPR/R/mainf.R | 5 +++-- BootPR-0.57/BootPR/R/ys.R | 2 +- BootPR-0.57/BootPR/R/ysT.R | 2 +- BootPR-0.57/BootPR/R/ysb.R | 2 +- BootPR-0.57/BootPR/R/ysbT.R | 2 +- BootPR-0.57/BootPR/man/BootPR-package.Rd | 4 ++-- 79 files changed, 121 insertions(+), 94 deletions(-)