Title: Methods for Tree-based Local Adaptive Thresholding
Diff between treethresh versions 0.1-3 dated 2009-07-26 and 0.1-4 dated 2010-01-04
Description: This package implements TreeThresh, a locally adaptive
version of EbayesThresh.
Author: Ludger Evers
Maintainer: Ludger Evers
DESCRIPTION | 8 ++++----
inst/doc/treethresh.Rnw | 12 ++++++------
inst/doc/treethresh.pdf |binary
man/wavelet.treethresh.Rd | 4 ++--
src/blockthresh.cc | 2 ++
5 files changed, 14 insertions(+), 12 deletions(-)
Title: Datasets for the R/qtl book
Diff between qtlbook versions 0.17-2 dated 2009-07-01 and 0.17-3 dated 2010-01-04
Description: Datasets for the book, A Guide to QTL Mapping with R/qtl
Author: Karl W Broman
Maintainer: Karl W Broman
DESCRIPTION | 8 ++++----
inst/CITATION | 2 +-
inst/STATUS.txt | 7 +++++++
man/ch3a.Rd | 4 ++--
man/ch3b.Rd | 4 ++--
man/ch3c.Rd | 4 ++--
man/gutlength.Rd | 6 +++---
man/iron.Rd | 4 ++--
man/myocard.Rd | 4 ++--
man/nf1.Rd | 6 +++---
man/ovar.Rd | 6 +++---
man/trout.Rd | 6 +++---
12 files changed, 34 insertions(+), 27 deletions(-)
Title: Quality speedy graphics compilation with Sweave
Diff between pgfSweave versions 1.0.1 dated 2009-12-04 and 1.0.3 dated 2010-01-04
Description: The pgfSweave package provides capabilities for 'caching'
graphics generated with Sweave. Using pgfSweave, figure labels
are converted to LaTeX strings so not only do they match the
style of the document but math can be put in labels. pgfSweave
provides a new driver for Sweave (pgfSweaveDriver) and new
chunk options tikz, pgf and external on top of the cache option
provided by cacheSweave. This package is built upon cacheSweave
and therefore also Sweave.
Author: Cameron Bracken
Maintainer: Cameron Bracken
ChangeLog | 1250 ++++++++++++
DESCRIPTION | 8
NEWS | 9
R/pgfSweaveDriver.R | 8
README | 5
exec/install-script.R | 2
exec/pgfsweave | 4
exec/pgfsweave-script.R | 28
inst/doc/figs/fig-normalSweave.pdf | 74
inst/doc/figs/fig-pgfSweave-hist.pdf |binary
inst/doc/figs/fig-pgfSweave-tikz-hist.pdf |binary
inst/doc/pgfSweave-example.pdf |binary
inst/doc/pgfSweave.Rnw | 42
inst/doc/pgfSweave.pdf | 1906 ++++++++++---------
inst/misc/vignette-src/pgfSweave-vignette-source.Rnw | 42
15 files changed, 2400 insertions(+), 978 deletions(-)
Title: marginTree: margin trees for high-dimensional classification
Diff between marginTree versions 1.00 dated 2008-01-05 and 1.01 dated 2010-01-04
Description: Some functions for high-dimensional classification, useful
for more than 2 classes
Author: R. Tibshirani
Maintainer: Rob TIbshirani
DESCRIPTION | 17 ++++++++++-------
man/marginTree.Rd | 1 -
man/marginTree.confusion.Rd | 2 --
man/marginTree.cv.Rd | 1 -
man/marginTree.getnonzero.Rd | 3 +--
man/marginTree.internal.Rd | 2 +-
man/marginTree.plclust.Rd | 3 +--
man/marginTree.plotcv.Rd | 2 --
man/marginTree.predict.Rd | 3 +--
9 files changed, 14 insertions(+), 20 deletions(-)
Title: R package for retrieving data from CIMIS.
Diff between cimis versions 0.1-2 dated 2009-07-30 and 0.1-3 dated 2010-01-04
Description: A set of functions for retrieving data from CIMIS, the
California Irrigation Management Information System.
Author: Greg Hirson
Maintainer: Greg Hirson
DESCRIPTION | 9 +++++----
R/cimis2.R | 1 +
R/multicimis.R |only
data/stnlist.rda |binary
data/stnlist.rda.old |only
man/mcimisannual.Rd |only
man/mcimishourly.Rd |only
updatelog |only
8 files changed, 6 insertions(+), 4 deletions(-)
Title: Mining NB-Frequent Itemsets and NB-Precise Rules
Diff between arulesNBMiner versions 0.1-0 dated 2009-03-27 and 0.1-1 dated 2010-01-04
Description: NBMiner is an implementation of the model-based mining
algorithm for mining NB-frequent itemsets presented in "Michael
Hahsler. A model-based frequency constraint for mining
associations from transaction data. Data Mining and Knowledge
Discovery, 13(2):137-166, September 2006." In addition an
extension for NB-precise rules is implemented.
Author: Michael Hahsler
Maintainer: Michael Hahsler
arulesNBMiner-0.1-0/arulesNBMiner/inst/jar |only
arulesNBMiner-0.1-1/arulesNBMiner/DESCRIPTION | 11 +++++----
arulesNBMiner-0.1-1/arulesNBMiner/R/AAAonLoad.R | 12 ++--------
arulesNBMiner-0.1-1/arulesNBMiner/inst/java |only
arulesNBMiner-0.1-1/arulesNBMiner/java/Association.class |only
arulesNBMiner-0.1-1/arulesNBMiner/java/Itemset.class |only
arulesNBMiner-0.1-1/arulesNBMiner/java/Makefile | 2 -
arulesNBMiner-0.1-1/arulesNBMiner/java/NBMiner.class |only
arulesNBMiner-0.1-1/arulesNBMiner/java/NBMiner.java | 4 ++-
arulesNBMiner-0.1-1/arulesNBMiner/java/R_result.class |only
arulesNBMiner-0.1-1/arulesNBMiner/java/Rule.class |only
arulesNBMiner-0.1-1/arulesNBMiner/java/SparseSetOfItemsets.class |only
arulesNBMiner-0.1-1/arulesNBMiner/java/arulesNBMiner.jar |only
arulesNBMiner-0.1-1/arulesNBMiner/man/NBMinerParameters.Rd | 2 -
14 files changed, 14 insertions(+), 17 deletions(-)
Title: R interface to the UNU.RAN random variate generators
Diff between Runuran versions 0.11.0 dated 2009-11-17 and 0.12.0 dated 2010-01-04
Description: Interface to the UNU.RAN library for Universal Non-Uniform
RANdom variate generators
Author: Josef Leydold and Wolfgang H\"ormann
Maintainer: Josef Leydold
DESCRIPTION | 8
NEWS | 13
R/Runuran.R | 20
R/universal.R | 65
configure | 18
configure.ac | 2
inst/doc/Runuran.pdf | 1013 +++++++--------
inst/doc/src/version.tex | 2
man/Runuran-package.Rd | 4
man/unuran.details.Rd | 69 -
src/Makevars.in | 4
src/Runuran.c | 43
src/Runuran.h | 5
src/distributions.c | 2
src/performance.c |only
src/unuran-src/distr/cemp.c | 2
src/unuran-src/distr/cemp.h | 2
src/unuran-src/distr/condi.c | 2
src/unuran-src/distr/condi.h | 2
src/unuran-src/distr/cont.c | 2
src/unuran-src/distr/cont.h | 2
src/unuran-src/distr/corder.c | 2
src/unuran-src/distr/corder.h | 2
src/unuran-src/distr/cvec.c | 2
src/unuran-src/distr/cvec.h | 2
src/unuran-src/distr/cvemp.c | 2
src/unuran-src/distr/cvemp.h | 2
src/unuran-src/distr/cxtrans.c | 2
src/unuran-src/distr/cxtrans.h | 2
src/unuran-src/distr/deprecated_distr.h | 2
src/unuran-src/distr/discr.c | 2
src/unuran-src/distr/discr.h | 2
src/unuran-src/distr/distr.c | 2
src/unuran-src/distr/distr.h | 2
src/unuran-src/distr/distr_info.c | 2
src/unuran-src/distr/distr_source.h | 2
src/unuran-src/distr/distr_struct.h | 2
src/unuran-src/distr/matr.c | 2
src/unuran-src/distr/matr.h | 2
src/unuran-src/distributions/c_F.c | 2
src/unuran-src/distributions/c_beta.c | 2
src/unuran-src/distributions/c_beta_gen.c | 2
src/unuran-src/distributions/c_burr.c | 2
src/unuran-src/distributions/c_cauchy.c | 2
src/unuran-src/distributions/c_chi.c | 2
src/unuran-src/distributions/c_chi_gen.c | 2
src/unuran-src/distributions/c_chisquare.c | 2
src/unuran-src/distributions/c_exponential.c | 2
src/unuran-src/distributions/c_exponential_gen.c | 2
src/unuran-src/distributions/c_extremeI.c | 2
src/unuran-src/distributions/c_extremeII.c | 2
src/unuran-src/distributions/c_gamma.c | 2
src/unuran-src/distributions/c_gamma_gen.c | 2
src/unuran-src/distributions/c_ghyp.c | 2
src/unuran-src/distributions/c_gig.c | 2
src/unuran-src/distributions/c_gig2.c | 2
src/unuran-src/distributions/c_gig_gen.c | 2
src/unuran-src/distributions/c_hyperbolic.c | 2
src/unuran-src/distributions/c_ig.c | 2
src/unuran-src/distributions/c_laplace.c | 2
src/unuran-src/distributions/c_logistic.c | 2
src/unuran-src/distributions/c_lognormal.c | 2
src/unuran-src/distributions/c_lomax.c | 2
src/unuran-src/distributions/c_normal.c | 2
src/unuran-src/distributions/c_normal_gen.c | 2
src/unuran-src/distributions/c_pareto.c | 2
src/unuran-src/distributions/c_powerexponential.c | 2
src/unuran-src/distributions/c_powerexponential_gen.c | 2
src/unuran-src/distributions/c_rayleigh.c | 2
src/unuran-src/distributions/c_slash.c | 2
src/unuran-src/distributions/c_slash_gen.c | 2
src/unuran-src/distributions/c_student.c | 2
src/unuran-src/distributions/c_student_gen.c | 2
src/unuran-src/distributions/c_triangular.c | 2
src/unuran-src/distributions/c_uniform.c | 2
src/unuran-src/distributions/c_weibull.c | 2
src/unuran-src/distributions/d_binomial.c | 2
src/unuran-src/distributions/d_binomial_gen.c | 2
src/unuran-src/distributions/d_geometric.c | 2
src/unuran-src/distributions/d_geometric_gen.c | 2
src/unuran-src/distributions/d_hypergeometric.c | 2
src/unuran-src/distributions/d_hypergeometric_gen.c | 2
src/unuran-src/distributions/d_logarithmic.c | 2
src/unuran-src/distributions/d_logarithmic_gen.c | 2
src/unuran-src/distributions/d_negativebinomial.c | 2
src/unuran-src/distributions/d_poisson.c | 2
src/unuran-src/distributions/d_poisson_gen.c | 2
src/unuran-src/distributions/d_zipf.c | 2
src/unuran-src/distributions/d_zipf_gen.c | 2
src/unuran-src/distributions/m_correlation.c | 2
src/unuran-src/distributions/unur_distributions.h | 2
src/unuran-src/distributions/unur_distributions_source.h | 2
src/unuran-src/distributions/unur_stddistr.h | 2
src/unuran-src/distributions/vc_copula.c | 2
src/unuran-src/distributions/vc_multicauchy.c | 2
src/unuran-src/distributions/vc_multiexponential.c | 2
src/unuran-src/distributions/vc_multinormal.c | 2
src/unuran-src/distributions/vc_multinormal_gen.c | 2
src/unuran-src/distributions/vc_multistudent.c | 2
src/unuran-src/methods/arou.c | 2
src/unuran-src/methods/arou.h | 2
src/unuran-src/methods/arou_struct.h | 2
src/unuran-src/methods/ars.c | 2
src/unuran-src/methods/ars.h | 2
src/unuran-src/methods/ars_struct.h | 2
src/unuran-src/methods/auto.c | 2
src/unuran-src/methods/auto.h | 2
src/unuran-src/methods/auto_struct.h | 2
src/unuran-src/methods/cext.c | 2
src/unuran-src/methods/cext.h | 2
src/unuran-src/methods/cext_struct.h | 2
src/unuran-src/methods/cstd.c | 2
src/unuran-src/methods/cstd.h | 2
src/unuran-src/methods/cstd_struct.h | 2
src/unuran-src/methods/dari.c | 2
src/unuran-src/methods/dari.h | 2
src/unuran-src/methods/dari_struct.h | 2
src/unuran-src/methods/dau.c | 2
src/unuran-src/methods/dau.h | 2
src/unuran-src/methods/dau_struct.h | 2
src/unuran-src/methods/deprecated_methods.h | 2
src/unuran-src/methods/deprecated_tdrgw.h | 2
src/unuran-src/methods/deprecated_vmt.h | 2
src/unuran-src/methods/deprecated_vmt_struct.h | 2
src/unuran-src/methods/dext.c | 2
src/unuran-src/methods/dext.h | 2
src/unuran-src/methods/dext_struct.h | 2
src/unuran-src/methods/dgt.c | 2
src/unuran-src/methods/dgt.h | 2
src/unuran-src/methods/dgt_struct.h | 2
src/unuran-src/methods/dsrou.c | 2
src/unuran-src/methods/dsrou.h | 2
src/unuran-src/methods/dsrou_struct.h | 2
src/unuran-src/methods/dss.c | 2
src/unuran-src/methods/dss.h | 2
src/unuran-src/methods/dss_struct.h | 2
src/unuran-src/methods/dstd.c | 2
src/unuran-src/methods/dstd.h | 2
src/unuran-src/methods/dstd_struct.h | 2
src/unuran-src/methods/empk.c | 2
src/unuran-src/methods/empk.h | 2
src/unuran-src/methods/empk_struct.h | 2
src/unuran-src/methods/empl.c | 2
src/unuran-src/methods/empl.h | 2
src/unuran-src/methods/empl_struct.h | 2
src/unuran-src/methods/gibbs.c | 2
src/unuran-src/methods/gibbs.h | 2
src/unuran-src/methods/gibbs_struct.h | 2
src/unuran-src/methods/hinv.c | 2
src/unuran-src/methods/hinv.h | 2
src/unuran-src/methods/hinv_struct.h | 2
src/unuran-src/methods/hist.c | 2
src/unuran-src/methods/hist.h | 2
src/unuran-src/methods/hist_struct.h | 2
src/unuran-src/methods/hitro.c | 2
src/unuran-src/methods/hitro.h | 2
src/unuran-src/methods/hitro_struct.h | 2
src/unuran-src/methods/hrb.c | 2
src/unuran-src/methods/hrb.h | 2
src/unuran-src/methods/hrb_struct.h | 2
src/unuran-src/methods/hrd.c | 2
src/unuran-src/methods/hrd.h | 2
src/unuran-src/methods/hrd_struct.h | 2
src/unuran-src/methods/hri.c | 2
src/unuran-src/methods/hri.h | 2
src/unuran-src/methods/hri_struct.h | 2
src/unuran-src/methods/itdr.c | 2
src/unuran-src/methods/itdr.h | 2
src/unuran-src/methods/itdr_struct.h | 2
src/unuran-src/methods/mcorr.c | 2
src/unuran-src/methods/mcorr.h | 2
src/unuran-src/methods/mcorr_struct.h | 2
src/unuran-src/methods/mvstd.c | 2
src/unuran-src/methods/mvstd.h | 2
src/unuran-src/methods/mvstd_struct.h | 2
src/unuran-src/methods/mvtdr.c | 2
src/unuran-src/methods/mvtdr.h | 2
src/unuran-src/methods/mvtdr_debug.ch | 2
src/unuran-src/methods/mvtdr_info.ch | 2
src/unuran-src/methods/mvtdr_init.ch | 2
src/unuran-src/methods/mvtdr_newset.ch | 2
src/unuran-src/methods/mvtdr_sample.ch | 2
src/unuran-src/methods/mvtdr_struct.h | 2
src/unuran-src/methods/ninv.c | 2
src/unuran-src/methods/ninv.h | 2
src/unuran-src/methods/ninv_debug.ch | 2
src/unuran-src/methods/ninv_info.ch | 2
src/unuran-src/methods/ninv_init.ch | 2
src/unuran-src/methods/ninv_newset.ch | 2
src/unuran-src/methods/ninv_newton.ch | 2
src/unuran-src/methods/ninv_regula.ch | 2
src/unuran-src/methods/ninv_sample.ch | 2
src/unuran-src/methods/ninv_struct.h | 2
src/unuran-src/methods/norta.c | 2
src/unuran-src/methods/norta.h | 2
src/unuran-src/methods/norta_struct.h | 2
src/unuran-src/methods/nrou.c | 2
src/unuran-src/methods/nrou.h | 2
src/unuran-src/methods/nrou_struct.h | 2
src/unuran-src/methods/pinv.c | 2
src/unuran-src/methods/pinv.h | 2
src/unuran-src/methods/pinv_debug.ch | 2
src/unuran-src/methods/pinv_info.ch | 2
src/unuran-src/methods/pinv_init.ch | 2
src/unuran-src/methods/pinv_newset.ch | 2
src/unuran-src/methods/pinv_newton.ch | 2
src/unuran-src/methods/pinv_prep.ch | 2
src/unuran-src/methods/pinv_sample.ch | 2
src/unuran-src/methods/pinv_struct.h | 2
src/unuran-src/methods/srou.c | 2
src/unuran-src/methods/srou.h | 2
src/unuran-src/methods/srou_struct.h | 2
src/unuran-src/methods/ssr.c | 2
src/unuran-src/methods/ssr.h | 2
src/unuran-src/methods/ssr_struct.h | 2
src/unuran-src/methods/tabl.c | 2
src/unuran-src/methods/tabl.h | 2
src/unuran-src/methods/tabl_debug.ch | 2
src/unuran-src/methods/tabl_info.ch | 2
src/unuran-src/methods/tabl_init.ch | 2
src/unuran-src/methods/tabl_newset.ch | 2
src/unuran-src/methods/tabl_sample.ch | 2
src/unuran-src/methods/tabl_struct.h | 2
src/unuran-src/methods/tdr.c | 2
src/unuran-src/methods/tdr.h | 2
src/unuran-src/methods/tdr_debug.ch | 2
src/unuran-src/methods/tdr_gw_debug.ch | 2
src/unuran-src/methods/tdr_gw_init.ch | 2
src/unuran-src/methods/tdr_gw_sample.ch | 2
src/unuran-src/methods/tdr_ia_sample.ch | 2
src/unuran-src/methods/tdr_info.ch | 2
src/unuran-src/methods/tdr_init.ch | 2
src/unuran-src/methods/tdr_newset.ch | 2
src/unuran-src/methods/tdr_ps_debug.ch | 2
src/unuran-src/methods/tdr_ps_init.ch | 2
src/unuran-src/methods/tdr_ps_sample.ch | 2
src/unuran-src/methods/tdr_sample.ch | 2
src/unuran-src/methods/tdr_struct.h | 2
src/unuran-src/methods/unif.c | 2
src/unuran-src/methods/unif.h | 2
src/unuran-src/methods/unif_struct.h | 2
src/unuran-src/methods/unur_methods_source.h | 2
src/unuran-src/methods/utdr.c | 4
src/unuran-src/methods/utdr.h | 2
src/unuran-src/methods/utdr_struct.h | 2
src/unuran-src/methods/vempk.c | 2
src/unuran-src/methods/vempk.h | 2
src/unuran-src/methods/vempk_struct.h | 2
src/unuran-src/methods/vnrou.c | 2
src/unuran-src/methods/vnrou.h | 2
src/unuran-src/methods/vnrou_struct.h | 2
src/unuran-src/methods/x_gen.c | 2
src/unuran-src/methods/x_gen.h | 2
src/unuran-src/methods/x_gen_source.h | 2
src/unuran-src/methods/x_gen_struct.h | 2
src/unuran-src/parser/functparser.c | 2
src/unuran-src/parser/functparser_debug.ch | 2
src/unuran-src/parser/functparser_deriv.ch | 2
src/unuran-src/parser/functparser_eval.ch | 2
src/unuran-src/parser/functparser_init.ch | 2
src/unuran-src/parser/functparser_parser.ch | 2
src/unuran-src/parser/functparser_scanner.ch | 2
src/unuran-src/parser/functparser_source.h | 2
src/unuran-src/parser/functparser_stringgen.ch | 2
src/unuran-src/parser/functparser_struct.h | 2
src/unuran-src/parser/functparser_symbols.h | 2
src/unuran-src/parser/parser.c | 2
src/unuran-src/parser/parser.h | 2
src/unuran-src/parser/parser_source.h | 2
src/unuran-src/parser/stringparser.c | 2
src/unuran-src/parser/stringparser_lists.ch | 2
src/unuran-src/specfunct/besselK.c | 7
src/unuran-src/specfunct/cephes_source.h | 2
src/unuran-src/specfunct/gamma.c | 2
src/unuran-src/specfunct/igam.c | 2
src/unuran-src/specfunct/incbet.c | 2
src/unuran-src/specfunct/log1p.c | 2
src/unuran-src/specfunct/ndtr.c | 2
src/unuran-src/specfunct/ndtri.c | 2
src/unuran-src/specfunct/polevl.c | 2
src/unuran-src/specfunct/unur_specfunct_source.h | 2
src/unuran-src/tests/chi2test.c | 2
src/unuran-src/tests/correlation.c | 2
src/unuran-src/tests/countpdf.c | 2
src/unuran-src/tests/counturn.c | 2
src/unuran-src/tests/inverror.c | 2
src/unuran-src/tests/moments.c | 2
src/unuran-src/tests/printsample.c | 2
src/unuran-src/tests/quantiles.c | 2
src/unuran-src/tests/tests.c | 2
src/unuran-src/tests/timing.c | 2
src/unuran-src/tests/unuran_tests.h | 2
src/unuran-src/uniform/unuran_urng_gsl.h | 2
src/unuran-src/uniform/unuran_urng_prng.h | 2
src/unuran-src/uniform/unuran_urng_rngstreams.h | 2
src/unuran-src/uniform/urng_builtin.h | 2
src/unuran-src/uniform/urng_fvoid.h | 2
src/unuran-src/uniform/urng_gsl.h | 2
src/unuran-src/uniform/urng_gslqrng.h | 2
src/unuran-src/uniform/urng_prng.h | 2
src/unuran-src/uniform/urng_randomshift.h | 2
src/unuran-src/uniform/urng_rngstreams.h | 2
src/unuran-src/unur_Rmath.h | 2
src/unuran-src/unur_cookies.h | 2
src/unuran-src/unur_source.h | 2
src/unuran-src/unur_struct.h | 2
src/unuran-src/unur_typedefs.h | 2
src/unuran-src/unuran.h | 2
src/unuran-src/urng/urng.c | 2
src/unuran-src/urng/urng.h | 2
src/unuran-src/urng/urng_default.c | 2
src/unuran-src/urng/urng_set.c | 2
src/unuran-src/urng/urng_source.h | 2
src/unuran-src/urng/urng_struct.h | 2
src/unuran-src/urng/urng_unuran.c | 2
src/unuran-src/utils/debug.c | 2
src/unuran-src/utils/debug.h | 2
src/unuran-src/utils/debug_source.h | 2
src/unuran-src/utils/eigensystem.c | 2
src/unuran-src/utils/error.c | 2
src/unuran-src/utils/error.h | 2
src/unuran-src/utils/error_source.h | 2
src/unuran-src/utils/fmax.c | 2
src/unuran-src/utils/fmax_source.h | 2
src/unuran-src/utils/hooke.c | 2
src/unuran-src/utils/hooke_source.h | 2
src/unuran-src/utils/lobatto.c | 2
src/unuran-src/utils/lobatto_source.h | 2
src/unuran-src/utils/lobatto_struct.h | 2
src/unuran-src/utils/matrix.c | 2
src/unuran-src/utils/matrix_source.h | 2
src/unuran-src/utils/mrou_rectangle.c | 2
src/unuran-src/utils/mrou_rectangle_source.h | 2
src/unuran-src/utils/mrou_rectangle_struct.h | 2
src/unuran-src/utils/slist.c | 2
src/unuran-src/utils/slist.h | 2
src/unuran-src/utils/slist_struct.h | 2
src/unuran-src/utils/stream.c | 2
src/unuran-src/utils/stream.h | 2
src/unuran-src/utils/stream_source.h | 2
src/unuran-src/utils/string.c | 2
src/unuran-src/utils/string_source.h | 2
src/unuran-src/utils/string_struct.h | 2
src/unuran-src/utils/umalloc.c | 2
src/unuran-src/utils/umalloc_source.h | 2
src/unuran-src/utils/umath.c | 2
src/unuran-src/utils/umath.h | 2
src/unuran-src/utils/umath_source.h | 2
src/unuran-src/utils/unur_errno.h | 2
src/unuran-src/utils/unur_fp.c | 2
src/unuran-src/utils/unur_fp_const_source.h | 2
src/unuran-src/utils/unur_fp_source.h | 2
src/unuran-src/utils/unur_math_source.h | 2
src/unuran-src/utils/vector.c | 2
src/unuran-src/utils/vector_source.h | 2
tests/test_unuran.R | 11
356 files changed, 1053 insertions(+), 913 deletions(-)
Title: Non-clustered heatmap alternatives
Diff between NeatMap versions 0.3.1 dated 2009-09-21 and 0.3.2 dated 2010-01-04
Description: NeatMap is a package to create heatmap like plots in 2 and
3 dimensions, without the need for cluster analysis. Like the
heatmap, the plots created by NeatMap display both a
dimensionally reduced representation of the data as well as the
data itself. They are intended to be used in conjunction with
dimensional reduction techniques such as PCA.
Author: Satwik Rajaram and Yoshi Oono
Maintainer: Satwik Rajaram
DESCRIPTION | 8 ++++----
R/Heatmap1.R | 5 +++--
man/circularmap.Rd | 2 +-
man/draw.dendrogram.Rd | 4 +++-
4 files changed, 11 insertions(+), 8 deletions(-)
Title: Gene set analysis
Diff between GSA versions 1.0 dated 2007-04-19 and 1.03 dated 2010-01-04
Description: Gene set analysis
Author: Brad Efron and R. Tibshirani
Maintainer: Rob Tibshirani
DESCRIPTION | 24 ++++++------
R/GSA.R | 14 +++++--
R/GSA.func.R | 89 ++++++++++++++++++++++++++++++++++++-----------
R/GSA.listsets.R | 26 ++++++++++---
R/GSA.morefuns.R | 27 ++++++++++++++
man/GSA.Rd | 12 ++++--
man/GSA.correlate.Rd | 4 --
man/GSA.func.Rd | 9 +++-
man/GSA.genescores.Rd | 2 -
man/GSA.listsets.Rd | 2 -
man/GSA.make.features.Rd | 2 -
man/GSA.plot.Rd | 2 -
12 files changed, 156 insertions(+), 57 deletions(-)
Title: Truncated Multivariate Normal Distribution
Diff between tmvtnorm versions 0.8-3 dated 2009-10-07 and 0.9-2 dated 2010-01-04
Description: Computes truncated multivariate normal probabilities,
quantiles and densities, including one-dimensional and
bivariate marginal densities. Random number generation.
Computes first and second moments (i.e. mean and covariance
matrix) for the double-truncated case.
Author: Stefan Wilhelm
Maintainer: Stefan Wilhelm
tmvtnorm-0.8-3/tmvtnorm/R/dmvtnorm-marginal.R |only
tmvtnorm-0.8-3/tmvtnorm/R/dmvtnorm.R |only
tmvtnorm-0.8-3/tmvtnorm/R/qtmvtnorm-marginal.R |only
tmvtnorm-0.8-3/tmvtnorm/man/dmvtnorm-marginal.Rd |only
tmvtnorm-0.8-3/tmvtnorm/man/rtmvtnorm.Rd |only
tmvtnorm-0.8-3/tmvtnorm/man/tmvtnorm.Rd |only
tmvtnorm-0.9-2/tmvtnorm/DESCRIPTION | 13
tmvtnorm-0.9-2/tmvtnorm/NAMESPACE | 1
tmvtnorm-0.9-2/tmvtnorm/R/bivariate-marginal-density.R | 29 -
tmvtnorm-0.9-2/tmvtnorm/R/dtmvnorm-marginal.R |only
tmvtnorm-0.9-2/tmvtnorm/R/dtmvnorm.R |only
tmvtnorm-0.9-2/tmvtnorm/R/mtmvnorm.R | 25 -
tmvtnorm-0.9-2/tmvtnorm/R/ptmvnorm-marginal.R | 26 -
tmvtnorm-0.9-2/tmvtnorm/R/ptmvnorm.R |only
tmvtnorm-0.9-2/tmvtnorm/R/qtmvnorm-marginal.R |only
tmvtnorm-0.9-2/tmvtnorm/R/rtmvnorm.R | 367 ++++++-----------
tmvtnorm-0.9-2/tmvtnorm/inst |only
tmvtnorm-0.9-2/tmvtnorm/man/dmvnorm.marginal.Rd |only
tmvtnorm-0.9-2/tmvtnorm/man/dtmvnorm.marginal2.Rd | 6
tmvtnorm-0.9-2/tmvtnorm/man/ptmvnorm.Rd | 10
tmvtnorm-0.9-2/tmvtnorm/man/rtmvnorm.Rd |only
tmvtnorm-0.9-2/tmvtnorm/man/tmvnorm.Rd |only
tmvtnorm-0.9-2/tmvtnorm/release-notes.txt | 19
tmvtnorm-0.9-2/tmvtnorm/src/rtmvnormgibbs.f90 | 24 -
24 files changed, 227 insertions(+), 293 deletions(-)
Title: Supervised principal components
Diff between superpc versions 1.06 dated 2009-04-14 and 1.07 dated 2010-01-04
Description: Supervised principal components for regression and
survival analsysis. Especially useful for high-dimnesional
data, including microarray data.
Author: Eric Bair, R. Tibshirani
Maintainer: Rob Tibshirani
DESCRIPTION | 6 +++---
man/superpc.cv.Rd | 1 -
man/superpc.decorrelate.Rd | 2 --
man/superpc.fit.to.outcome.Rd | 2 --
man/superpc.listfeatures.Rd | 1 -
man/superpc.lrtest.curv.Rd | 3 ---
man/superpc.plot.lrtest.Rd | 5 -----
man/superpc.plotcv.Rd | 3 ---
man/superpc.plotred.lrtest.Rd | 5 -----
man/superpc.predict.Rd | 2 --
man/superpc.predict.red.Rd | 1 -
man/superpc.predict.red.cv.Rd | 3 ---
man/superpc.predictionplot.Rd | 5 -----
man/superpc.rainbowplot.Rd | 2 --
14 files changed, 3 insertions(+), 38 deletions(-)
Title: SAM: Significance Analysis of Microarrays
Diff between samr versions 1.26 dated 2008-09-28 and 1.27 dated 2010-01-04
Description: Significance Analysis of Microarrays
Author: R. Tibshirani, G. Chu, T. Hastie, Balasubramanian Narasimhan
Maintainer: Rob Tibshirani
DESCRIPTION | 22 ++++++++++++----------
R/samr.morefuns.R | 3 ++-
man/samr.Rd | 12 ++++++------
man/samr.assess.samplesize.Rd | 2 +-
man/samr.assess.samplesize.plot.Rd | 1 -
man/samr.missrate.Rd | 2 +-
man/samr.plot.Rd | 2 +-
man/samr.pvalues.from.perms.Rd | 2 +-
man/samr.tail.strength.Rd | 2 +-
9 files changed, 25 insertions(+), 23 deletions(-)
Title: Subdistribution Analysis of Competing Risks
Diff between cmprsk versions 2.2-0 dated 2008-12-13 and 2.2-1 dated 2010-01-04
Description: Estimation, testing and regression modeling of
subdistribution functions in competing risks, as described in
Gray (1988), A class of K-sample tests for comparing the
cumulative incidence of a competing risk, Ann. Stat.
16:1141-1154, and Fine JP and Gray RJ (1999), A proportional
hazards model for the subdistribution of a competing risk,
JASA, 94:496-509.
Author: Bob Gray
Maintainer: Bob Gray
DESCRIPTION | 21 ++++++++++++---------
man/cuminc.Rd | 27 ++++++++++-----------------
2 files changed, 22 insertions(+), 26 deletions(-)
Title: R Commander Plugin for (industrial) Design of Experiments
Diff between RcmdrPlugin.DoE versions 0.6-9 dated 2009-12-20 and 0.6-10 dated 2010-01-04
More information about RcmdrPlugin.DoE at CRAN
Description: WARNING: This package is currently in beta status! The
package provides a platform-independent GUI for design of
experiments. It is implemented as a plugin to the R-Commander,
which is a more general graphical user interface for statistics
in R based on tcl/tk. DoE functionality can be accessed through
the menu Design that is added to the R-Commander menus.
Author: Ulrike Groemping
Maintainer: Ulrike Groemping
DESCRIPTION | 10 +-
R/Menu.FrF2level.R | 141 ++++++++++++++++++++++++++++++--------
R/Menu.addresponse.R | 11 ++
R/menu.defaults.R | 3
inst/NEWS | 4 +
man/Menu.FrF2levelTabEstimable.Rd | 21 ++++-
6 files changed, 150 insertions(+), 40 deletions(-)
Permanent link
Title: Easy handling of and access to files organized in structured
directories
Diff between R.filesets versions 0.6.5 dated 2009-11-03 and 0.7.0 dated 2010-01-04
Description: A file set refers to a set of files located in one or more
directories on the file system. This package provides classes
and methods to locate, setup, subset, navigate and iterate
suchs sets. The API is designed such that these classes can be
subsetted to provide a richer API for special file formats.
Moreover, a specific name format is defined such that filenames
and directories can be considered to have fullnames which
consists of a name followed by comma-separated tags. This adds
additional flexibility to identify file sets and individual
files. NOTE: This package's API should be considered to be in
an beta stage. Its main purpose is currently to support the
aroma.* packages, where it is one of the main core components;
if you decide to build on top of this package, please contact
the author first.
Author: Henrik Bengtsson
Maintainer: Henrik Bengtsson
DESCRIPTION | 34 -
R/FullNameInterface.R | 55 +-
R/GenericDataFile.R | 69 ++-
R/GenericDataFileSet.R | 243 ++++++++++--
R/GenericDataFileSetList.R | 524 +++++++++++++++++++++++++--
R/GenericTabularFileSet.R | 2
R/TabularTextFile.R | 2
incl/999.missingdocs.txt | 26 +
incl/GenericDataFileSet.Rex |only
incl/GenericDataFileSetList.Rex |only
inst/NEWS | 32 +
man/FullNameInterface.Rd | 2
man/GenericDataFileSet.Rd | 53 ++
man/GenericDataFileSetList.Rd |only
man/Non-documented_objects.Rd | 38 +
man/R.filesets-package.Rd | 2
man/extract.GenericDataFileSet.Rd | 5
man/getDefaultFullName.GenericDataFileSet.Rd | 8
man/getNames.GenericDataFileSet.Rd | 1
man/getTags.FullNameInterface.Rd | 4
man/indexOf.GenericDataFileSet.Rd |only
21 files changed, 968 insertions(+), 132 deletions(-)
Title: Multivariate two-sample tests based on K-nearest-neighbors
Diff between MTSKNN versions 0.0-4 dated 2009-12-07 and 0.0-5 dated 2010-01-04
Description: The package contains four multivariate two-sample tests
which are all based on k-nearest-neighbors. The testing
procedures are distribution free and are robust from balanced
designs to unbalanced designs.
Author: Lisha Chen
Maintainer: Wei Dou
DESCRIPTION | 8 ++++----
man/mtsknn.neq.Rd | 2 +-
2 files changed, 5 insertions(+), 5 deletions(-)