Title: Rmetrics - Financial Time Series Objects
Diff between timeSeries versions 2110.86 dated 2009-12-13 and 2110.87 dated 2010-01-06
Description: Environment for teaching "Financial Engineering and
Computational Finance"
Author: Diethelm Wuertz and Yohan Chalabi
Maintainer: Rmetrics Core Team
ChangeLog | 38 ++++++++++++++++++++++++++++++++++++++
DESCRIPTION | 8 ++++----
NAMESPACE | 2 ++
R/fin-runlength.R |only
inst/unitTests/runit.aggregate.R | 17 ++++++++---------
inst/unitTests/runit.subset.R | 7 +++----
6 files changed, 55 insertions(+), 17 deletions(-)
Title: R Fortunes
Diff between fortunes versions 1.3-6 dated 2008-12-09 and 1.3-7 dated 2010-01-06
Description: R Fortunes
Author: Achim Zeileis (R code) and the R community (fortunes). Fortune
contributions by Torsten Hothorn, Peter Dalgaard, Uwe Ligges,
Kevin Wright, Martin Maechler, Kjetil Brinchmann Halvorsen,
Kurt Hornik, Duncan Murdoch, Andy Bunn, Ray Brownrigg, Roger
Bivand, Spencer Graves, Jim Lemon, Christian Kleiber, David L.
Reiner, Berton Gunter, Roger Koenker, Charles Berry, Marc
Schwartz, Michael Dewey, Ben Bolker, Peter Dunn, Sarah Goslee,
Simon Blomberg, Bill Venables, Roland Rau, Thomas Petzoldt,
Rolf Turner, Mark Leeds, Emmanuel Charpentier, Chris Evans,
Paolo Sonego.
Maintainer: Achim Zeileis
DESCRIPTION | 26 +++++++++++++++-----------
R/fortunes.R | 5 ++++-
inst/fortunes/fortunes.csv | 32 +++++++++++++++++++++++++++++++-
3 files changed, 50 insertions(+), 13 deletions(-)
Title: Rmetrics - Economic and Financial Data Import
Diff between fImport versions 2100.77 dated 2009-09-29 and 2110.78 dated 2010-01-06
Description: Environment for teaching "Financial Engineering and
Computational Finance"
Author: Diethelm Wuertz and many others, see the SOURCE file
Maintainer: Rmetrics Core Team
ChangeLog | 1044 +++++++++++++++++++++++++++++++++++++++++++++++++++++++-
DESCRIPTION | 10
R/fredImport.R | 110 ++---
R/oandaImport.R | 108 ++---
4 files changed, 1143 insertions(+), 129 deletions(-)
Title: Evaluation and experimental design for binomial group testing
Diff between binGroup versions 1.0-3 dated 2009-10-27 and 1.0-4 dated 2010-01-06
Description: This package provides methods for estimation and
hypothesis testing of proportions in group testing designs.
Currently, methods of estimating a proportion in a single
population, as well as hypothesis tests and functions for
experimental design for this situation are provided. Further,
regression methods are implemented for simple pooling and
matrix pooling designs.
Author: Boan Zhang, Christopher Bilder, Frank Schaarschmidt
Maintainer: Frank Schaarschmidt
binGroup-1.0-3/binGroup/man/print.bgtCI.Rd |only
binGroup-1.0-3/binGroup/man/print.bgtvs.Rd |only
binGroup-1.0-4/binGroup/DESCRIPTION | 8 +-
binGroup-1.0-4/binGroup/R/bgtAC.R | 14 ++--
binGroup-1.0-4/binGroup/R/bgtBlaker.R | 24 +++----
binGroup-1.0-4/binGroup/R/bgtCI.R | 71 +++++++++------------
binGroup-1.0-4/binGroup/R/bgtCP.R | 24 +++----
binGroup-1.0-4/binGroup/R/bgtPower.R | 24 +++----
binGroup-1.0-4/binGroup/R/bgtPowerI.R | 30 ++++-----
binGroup-1.0-4/binGroup/R/bgtSOC.R | 18 ++---
binGroup-1.0-4/binGroup/R/bgtTest.R | 62 +++++++-----------
binGroup-1.0-4/binGroup/R/bgtWald.R | 14 ++--
binGroup-1.0-4/binGroup/R/bgtWidth.R | 28 +++++++-
binGroup-1.0-4/binGroup/R/bgtWidthI.R | 22 +++---
binGroup-1.0-4/binGroup/R/bgtWilson.R | 8 +-
binGroup-1.0-4/binGroup/R/bgtvs.R | 50 +++++++--------
binGroup-1.0-4/binGroup/R/binAC.R | 17 ++---
binGroup-1.0-4/binGroup/R/binBlaker.R | 25 +++----
binGroup-1.0-4/binGroup/R/binCI.R | 70 +++++++++------------
binGroup-1.0-4/binGroup/R/binCP.R | 24 +++----
binGroup-1.0-4/binGroup/R/binDesign.R | 9 --
binGroup-1.0-4/binGroup/R/binPower.R | 43 +++++--------
binGroup-1.0-4/binGroup/R/binSOC.R | 6 -
binGroup-1.0-4/binGroup/R/binTest.R | 31 ++++++---
binGroup-1.0-4/binGroup/R/binWald.R | 7 --
binGroup-1.0-4/binGroup/R/binWidth.R | 38 +++++++----
binGroup-1.0-4/binGroup/R/binWilson.R | 22 +++---
binGroup-1.0-4/binGroup/R/estDesign.R | 8 +-
binGroup-1.0-4/binGroup/R/msep.R | 8 +-
binGroup-1.0-4/binGroup/R/nDesign.R | 24 +++----
binGroup-1.0-4/binGroup/R/print.bgtCI.R | 21 +++++-
binGroup-1.0-4/binGroup/R/print.bgtTest.R | 37 +++++++++--
binGroup-1.0-4/binGroup/R/print.binDesign.R | 30 ++++-----
binGroup-1.0-4/binGroup/R/print.nDesign.R | 42 ++++++------
binGroup-1.0-4/binGroup/R/print.sDesign.R | 40 ++++++------
binGroup-1.0-4/binGroup/R/sDesign.R | 23 +++---
binGroup-1.0-4/binGroup/man/bgtCI.Rd | 70 +++++++--------------
binGroup-1.0-4/binGroup/man/bgtPower.Rd | 66 +++++++++-----------
binGroup-1.0-4/binGroup/man/bgtTest.Rd | 67 ++++++++++----------
binGroup-1.0-4/binGroup/man/bgtWidth.Rd | 29 ++++----
binGroup-1.0-4/binGroup/man/bgtvs.Rd | 79 ++++++++++--------------
binGroup-1.0-4/binGroup/man/binCI.Rd | 38 +++++------
binGroup-1.0-4/binGroup/man/binDesign.Rd | 16 ++--
binGroup-1.0-4/binGroup/man/binGroup-package.Rd | 10 +--
binGroup-1.0-4/binGroup/man/binPower.Rd | 34 +++++-----
binGroup-1.0-4/binGroup/man/binTest.Rd | 21 +++---
binGroup-1.0-4/binGroup/man/binWidth.Rd | 6 -
binGroup-1.0-4/binGroup/man/estDesign.Rd | 8 +-
binGroup-1.0-4/binGroup/man/nDesign.Rd | 56 ++++++-----------
binGroup-1.0-4/binGroup/man/print.bgt.Rd |only
binGroup-1.0-4/binGroup/man/sDesign.Rd | 37 ++++-------
51 files changed, 720 insertions(+), 739 deletions(-)
Title: Harvest Metadata Using OAI-PMH v2.0
Diff between OAIHarvester versions 0.0-6 dated 2009-09-25 and 0.0-7 dated 2010-01-06
Description: Harvest metadata using the Open Archives Initiative
Protocol for Metadata Harvesting (OAI-PMH) version 2.0.
Author: Kurt Hornik
Maintainer: Kurt Hornik
DESCRIPTION | 8 ++++----
R/pmh.R | 27 +++++++++++++++++++++------
R/utils.R | 5 ++++-
R/verb.R | 11 ++++-------
inst/doc/oaih.pdf |binary
5 files changed, 33 insertions(+), 18 deletions(-)
Title: Statistical methods for safety assessment in agricultural field
trials
Diff between BSagri versions 0.1-5 dated 2008-11-04 and 0.1-6 dated 2010-01-06
Description: Collection of functions, data sets and code examples for
evaluations of field trials with the objective of safety
assessment.
Author: Frank Schaarschmidt
Maintainer: Frank Schaarschmidt
BSagri-0.1-5/BSagri/data/MixedGaussian.tex |only
BSagri-0.1-5/BSagri/man/BOOTSimpsonD.Rd |only
BSagri-0.1-6/BSagri/DESCRIPTION | 27 ++++++++++++++++-----------
BSagri-0.1-6/BSagri/R/BOOTSimpsonD.R | 2 +-
BSagri-0.1-6/BSagri/R/BOOTSimpsonR.R | 2 +-
BSagri-0.1-6/BSagri/man/BOOTSimpson.Rd |only
6 files changed, 18 insertions(+), 13 deletions(-)
Title: Statistical Modeling
Diff between statmod versions 1.4.1 dated 2009-09-29 and 1.4.2 dated 2010-01-06
Description: Various statistical modeling functions including growth
curve comparisons, limiting dilution analysis, mixed linear
models, heteroscedastic regression, Tweedie family generalized
linear models, the inverse-Gaussian distribution and Gauss
quadrature.
Author: Gordon Smyth with contributions from Yifang Hu and Peter Dunn
Maintainer: Gordon Smyth
DESCRIPTION | 8 ++++----
R/glmscoretest.R | 27 ++++++++++++++++++++++-----
R/limdil.R | 7 ++++---
inst/doc/changelog.txt | 6 ++++++
man/glmscoretest.Rd | 7 ++++++-
man/limdil.Rd | 30 +++++++++++++++---------------
6 files changed, 57 insertions(+), 28 deletions(-)
Title: Spatial Point Pattern analysis, model-fitting, simulation, tests
Diff between spatstat versions 1.17-4 dated 2009-12-17 and 1.17-5 dated 2010-01-06
Description: A package for analysing spatial data, mainly Spatial Point
Patterns, including multitype/marked points and spatial
covariates, in any two-dimensional spatial region. Also
supports three-dimensional point patterns. Contains functions
for plotting spatial data, exploratory data analysis,
model-fitting, simulation, spatial sampling, model diagnostics,
and formal inference. Data types include point patterns, line
segment patterns, spatial windows, pixel images and
tessellations. Point process models can be fitted to point
pattern data. Cluster type models are fitted by the method of
minimum contrast. Very general Gibbs point process models can
be fitted to point pattern data using a function ppm similar to
lm or glm. Models may include dependence on covariates,
interpoint interaction and dependence on marks. Fitted models
can be simulated automatically. Also provides facilities for
formal inference (such as chi-squared tests) and model
diagnostics (including simulation envelopes, residuals,
residual plots and Q-Q plots).
Author: Adrian Baddeley
Maintainer: Adrian Baddeley
spatstat-1.17-4/spatstat/.Rbuildindex.12568 |only
spatstat-1.17-4/spatstat/.Rbuildindex.17656 |only
spatstat-1.17-4/spatstat/.Rbuildindex.6632 |only
spatstat-1.17-4/spatstat/.Rbuildindex.6913 |only
spatstat-1.17-4/spatstat/.Rbuildindex.7635 |only
spatstat-1.17-4/spatstat/.Rbuildindex.9742 |only
spatstat-1.17-4/spatstat/INDEX |only
spatstat-1.17-5/spatstat/DESCRIPTION | 8
spatstat-1.17-5/spatstat/R/distan3D.R |only
spatstat-1.17-5/spatstat/R/distances.R | 355 +++++++----
spatstat-1.17-5/spatstat/R/envelope.R | 18
spatstat-1.17-5/spatstat/R/fasp.R | 3
spatstat-1.17-5/spatstat/R/fv.R | 53 +
spatstat-1.17-5/spatstat/R/hyperframe.R | 6
spatstat-1.17-5/spatstat/R/periodify.R |only
spatstat-1.17-5/spatstat/R/plot.ppp.S | 10
spatstat-1.17-5/spatstat/R/random.S | 4
spatstat-1.17-5/spatstat/R/rknn.R |only
spatstat-1.17-5/spatstat/R/util.S | 15
spatstat-1.17-5/spatstat/demo/spatstat.R | 110 ++-
spatstat-1.17-5/spatstat/inst/doc/shapefiles.pdf | 721 +++++++++++------------
spatstat-1.17-5/spatstat/man/crossdist.pp3.Rd |only
spatstat-1.17-5/spatstat/man/internal.Rd | 8
spatstat-1.17-5/spatstat/man/nndist.Rd | 40 +
spatstat-1.17-5/spatstat/man/nndist.pp3.Rd |only
spatstat-1.17-5/spatstat/man/nndist.psp.Rd | 36 -
spatstat-1.17-5/spatstat/man/nnwhich.Rd | 56 +
spatstat-1.17-5/spatstat/man/nnwhich.pp3.Rd |only
spatstat-1.17-5/spatstat/man/pairdist.pp3.Rd |only
spatstat-1.17-5/spatstat/man/periodify.Rd |only
spatstat-1.17-5/spatstat/man/rknn.Rd |only
spatstat-1.17-5/spatstat/man/shift.Rd | 3
spatstat-1.17-5/spatstat/man/shift.owin.Rd | 1
spatstat-1.17-5/spatstat/man/shift.ppp.Rd | 1
spatstat-1.17-5/spatstat/man/shift.psp.Rd | 1
spatstat-1.17-5/spatstat/man/spatstat-package.Rd | 23
spatstat-1.17-5/spatstat/src/distan3.c |only
spatstat-1.17-5/spatstat/src/distances.c | 327 ----------
spatstat-1.17-5/spatstat/src/nn3Ddist.c |only
spatstat-1.17-5/spatstat/src/nndistance.c |only
spatstat-1.17-5/spatstat/tests/nndist.R |only
41 files changed, 897 insertions(+), 902 deletions(-)
Title: Proportional Hazards Mixed-effects Model (PHMM)
Diff between phmm versions 0.6.1 dated 2009-09-22 and 0.6.3 dated 2010-01-06
Description: Fits proportional hazards model incorporating random
effects using an EM agorithm using Markov Chain Monte Carlo at
E-step.
Author: Michael Donohue, Ronghui Xu
Maintainer: Michael Donohue
phmm-0.6.1/phmm/src/nrutil.c |only
phmm-0.6.1/phmm/src/nrutil.h |only
phmm-0.6.3/phmm/DESCRIPTION | 8 +++---
phmm-0.6.3/phmm/man/phmm-package.Rd | 2 -
phmm-0.6.3/phmm/man/phmm.design.Rd | 4 +--
phmm-0.6.3/phmm/src/arms.c | 15 +++++-------
phmm-0.6.3/phmm/src/ludcmp.c | 2 -
phmm-0.6.3/phmm/src/phmm.c | 6 +---
phmm-0.6.3/phmm/src/phmm.h | 1
phmm-0.6.3/phmm/src/reffvar.c | 3 --
phmm-0.6.3/phmm/src/remnewt.c | 45 ++++++++++++++++++++++++------------
11 files changed, 50 insertions(+), 36 deletions(-)
Title: Regularized estimation of partial correlation matrices
Diff between parcor versions 0.2-1 dated 2009-11-17 and 0.2-2 dated 2010-01-06
Description: The package estimates the matrix of partial correlations
based on different regularized regression methods: lasso,
adaptive lasso, PLS, and Ridge Regression. In addition, the
package provides model selection for lasso, adaptive lasso and
Ridge regression based on cross-validation.
Author: Nicole Kraemer, Juliane Schaefer
Maintainer: Nicole Kraemer
DESCRIPTION | 12 +++++++-----
man/Beta2parcor.Rd | 4 +++-
man/adalasso.Rd | 4 +++-
man/adalasso.net.Rd | 7 +++++--
man/mylars.Rd | 4 +++-
man/parcor-package.Rd | 11 +++++++----
man/performance.pcor.Rd | 8 ++++++++
man/pls.net.Rd | 4 +++-
man/ridge.net.Rd | 4 +++-
9 files changed, 42 insertions(+), 16 deletions(-)
Title: Graphical Gaussian Models
Diff between ggm versions 1.0.2 dated 2006-02-09 and 1.0.3 dated 2010-01-06
Description: Functions for fitting Gaussian Markov models.
Author: Giovanni M. Marchetti, Mathias Drton
Maintainer: Giovanni M. Marchetti
DESCRIPTION | 22 ++++++++++++----------
man/UG.Rd | 1 -
man/checkIdent.Rd | 2 +-
man/fitCovGraph.Rd | 2 +-
man/rsphere.Rd | 2 +-
man/shipley.test.Rd | 1 -
man/transClos.Rd | 2 --
man/triDec.Rd | 2 +-
8 files changed, 16 insertions(+), 18 deletions(-)
Title: Provides tests and graphics for assessing tests of equivalence
Diff between equivalence versions 0.5.5 dated 2009-02-08 and 0.5.6 dated 2010-01-06
Description: This package provides some statistical tests and graphics
for assessing tests of equivalence. Such tests have similarity
as the alternative hypothesis instead of the null. Sample
datasets are included.
Author: Andrew Robinson
Maintainer: Andrew Robinson
ChangeLog | 6 ++++++
DESCRIPTION | 8 +++++---
man/equivalence.xyplot.Rd | 2 +-
3 files changed, 12 insertions(+), 4 deletions(-)
Title: CCMN and other noRMalizatioN methods for metabolomics data
Diff between crmn versions 0.0.8 dated 2009-12-02 and 0.0.10 dated 2010-01-06
Description: Implements the Cross-contribution Compensating Multiple
standard Normalization (CCMN) method and other normalization
algorithms.
Author: Henning Redestig
Maintainer: Henning Redestig
DESCRIPTION | 8 ++++----
NEWS |only
R/classes.R | 3 +--
R/crmn-package.R | 13 ++++++-------
R/generic.R | 46 ++++++++++++++++++----------------------------
R/misc.R | 33 ++++++++++++---------------------
R/norm.R | 44 +++++++++++++-------------------------------
inst/doc/auto |only
inst/doc/crmn.pdf |binary
man/analytes.Rd | 5 ++---
man/analytes_eset.Rd | 5 ++---
man/analytes_other.Rd | 5 ++---
man/crmn.Rd | 11 +++++------
man/dropunusedlevels.Rd | 5 ++---
man/makeX.Rd | 8 +++-----
man/makeX_eset.Rd | 8 +++-----
man/makeX_other.Rd | 8 +++-----
man/method.Rd | 5 ++---
man/mexprs.Rd | 7 ++-----
man/model.Rd | 5 ++---
man/nFit.Rd | 5 ++---
man/normFit.Rd | 8 +++-----
man/normPred.Rd | 8 +++-----
man/normalize.Rd | 8 +++-----
man/pcaMuffle.Rd | 7 ++-----
man/plot.nFit.Rd | 5 ++---
man/sFit.Rd | 5 ++---
man/set_mexprs.Rd | 6 ++----
man/show.Rd | 7 ++-----
man/show_nfit.Rd | 5 ++---
man/standards.Rd | 5 ++---
man/standardsFit.Rd | 12 +++++-------
man/standardsPred.Rd | 7 ++-----
man/standards_eset.Rd | 5 ++---
man/standards_other.Rd | 5 ++---
man/weightnorm.Rd | 8 +++-----
36 files changed, 121 insertions(+), 204 deletions(-)
Title: Zero Inflated Generalized Poisson (ZIGP) regression models
Diff between ZIGP versions 3.6 dated 2009-06-26 and 3.7 dated 2010-01-06
Description: Fit, analyze and compare GP, ZIP and ZIGP regression
models
Author: Vinzenz Erhardt
Maintainer: Vinzenz Erhardt
ZIGP-3.6/ZIGP/man/zigp-package.rd |only
ZIGP-3.7/ZIGP/DESCRIPTION | 8 ++++----
ZIGP-3.7/ZIGP/inst/CITATION | 1 +
ZIGP-3.7/ZIGP/man/ZIGP-package.rd |only
ZIGP-3.7/ZIGP/man/dzigp.rd | 4 +---
ZIGP-3.7/ZIGP/man/pzigp.rd | 4 +---
6 files changed, 7 insertions(+), 10 deletions(-)
Title: Statistical Analysis for Environmental Data
Diff between StatDA versions 1.2 dated 2009-11-06 and 1.3 dated 2010-01-06
Description: This package offers different possibilities to make
statistical analysis for Environmental Data.
Author: Peter Filzmoser and Barbara Steiger
Maintainer: Peter Filzmoser
DESCRIPTION | 13 +++++++------
inst/doc/StatDA.pdf |binary
2 files changed, 7 insertions(+), 6 deletions(-)
Title: General network (HTTP/FTP/...) client interface for R
Diff between RCurl versions 1.3-0 dated 2009-10-27 and 1.3-1 dated 2010-01-06
Description: The package allows one to compose general HTTP requests
and provides convenient functions to fetch URIs, get & post
forms, etc. and process the results returned by the Web server.
This provides a great deal of control over the HTTP/FTP/...
connection and the form of the request while providing a
higher-level interface than is available just using R socket
connections. Additionally, the underlying implementation is
robust and extensive, supporting FTP/FTPS/TFTP (uploads and
downloads), SSL/HTTPS, telnet, dict, ldap, and also supports
cookies, redirects, authentication, etc.
Author: Duncan Temple Lang
Maintainer: Duncan Temple Lang
Changes.html | 12 +++++++++++-
DESCRIPTION | 6 +++---
NAMESPACE | 2 +-
R/curl.S | 45 +++++++++++++++++++++++++++++++++++++++++++++
R/form.S | 5 +++--
man/curlEscape.Rd | 22 +++++++++++++++++++---
man/postForm.Rd | 11 +++++++++--
7 files changed, 91 insertions(+), 12 deletions(-)