Title: Mesh generation and surface tesselation
Diff between geometry versions 0.1-5 dated 2010-01-05 and 0.1-6 dated 2010-01-08
Description: This package makes the qhull library (www.qhull.org)
available in R, in a similar manner as in Octave and MATLAB.
Qhull computes convex hulls, Delaunay triangulations, halfspace
intersections about a point, Voronoi diagrams, furthest-site
Delaunay triangulations, and furthest-site Voronoi diagrams. It
runs in 2-d, 3-d, 4-d, and higher dimensions. It implements the
Quickhull algorithm for computing the convex hull. Qhull does
not support constrained Delaunay triangulations, or mesh
generation of non-convex objects, but the package does include
some R functions that allow for this. Currently the package
only gives access to Delaunay triangulation and convex hull
computation.
Author: Raoul Grasman and Robert B. Gramacy
Maintainer: Robert B. Gramacy
DESCRIPTION | 10 +++++-----
LICENSE | 18 ++----------------
2 files changed, 7 insertions(+), 21 deletions(-)
Title: Pretty descriptive stats.
Diff between prettyR versions 1.7 dated 2009-11-11 and 1.8 dated 2010-01-08
Description: Functions for conventionally formatted descriptive stats,
and to format R output as HTML.
Author: Jim Lemon
Maintainer: Jim Lemon
DESCRIPTION | 8 ++++----
R/delim.table.R | 7 ++++---
R/xtab.R | 8 ++++----
3 files changed, 12 insertions(+), 11 deletions(-)
Title: Ordination and Multivariate Analysis for Ecology
Diff between labdsv versions 1.3-1 dated 2008-02-11 and 1.4-1 dated 2010-01-08
Description: A variety of ordination and vegetation analyses useful in
analysis of datasets in community ecology. Includes many of
the common ordination methods, with graphical routines to
facilitate their interpretation, as well as several novel
analyses.
Author: David W. Roberts
Maintainer: David W. Roberts
labdsv-1.3-1/labdsv/R/duleg.R |only
labdsv-1.3-1/labdsv/man/duarm.Rd |only
labdsv-1.3-1/labdsv/man/duleg.Rd |only
labdsv-1.3-1/labdsv/src/duleg.f |only
labdsv-1.4-1/labdsv/DESCRIPTION | 21 ++++++----
labdsv-1.4-1/labdsv/R/const.R | 66 ++++++++++++++++++++++++++++------
labdsv-1.4-1/labdsv/R/drop.R |only
labdsv-1.4-1/labdsv/R/importance.R | 54 +++++++++++++++++++++++++--
labdsv-1.4-1/labdsv/R/indspc.R | 28 +++++++++-----
labdsv-1.4-1/labdsv/R/indval.R |only
labdsv-1.4-1/labdsv/R/isamic.R | 2 -
labdsv-1.4-1/labdsv/R/nmds.R | 55 +++++++++++++++-------------
labdsv-1.4-1/labdsv/R/ordtaxa.R |only
labdsv-1.4-1/labdsv/R/ordutils.R | 10 +++++
labdsv-1.4-1/labdsv/R/pco.R | 31 ++++-----------
labdsv-1.4-1/labdsv/R/raretaxa.R |only
labdsv-1.4-1/labdsv/R/rgl.nmds.R |only
labdsv-1.4-1/labdsv/R/spcdisc.R | 1
labdsv-1.4-1/labdsv/R/thull.R |only
labdsv-1.4-1/labdsv/inst/ChangeLog | 65 +++++++++++++++++++++++++++++++++
labdsv-1.4-1/labdsv/man/const.Rd | 8 ++--
labdsv-1.4-1/labdsv/man/dropplt.Rd |only
labdsv-1.4-1/labdsv/man/dropspc.Rd |only
labdsv-1.4-1/labdsv/man/dsvdis.Rd | 2 -
labdsv-1.4-1/labdsv/man/importance.Rd | 6 ++-
labdsv-1.4-1/labdsv/man/indspc.Rd | 4 +-
labdsv-1.4-1/labdsv/man/indval.Rd |only
labdsv-1.4-1/labdsv/man/isamic.Rd |only
labdsv-1.4-1/labdsv/man/matrify.Rd | 4 +-
labdsv-1.4-1/labdsv/man/nmds.Rd | 4 +-
labdsv-1.4-1/labdsv/man/ordtaxa.Rd |only
labdsv-1.4-1/labdsv/man/pca.Rd | 12 +++---
labdsv-1.4-1/labdsv/man/pco.Rd | 6 +--
labdsv-1.4-1/labdsv/man/plot.nmds.Rd | 33 ++++++++++++-----
labdsv-1.4-1/labdsv/man/plot.pca.Rd | 4 +-
labdsv-1.4-1/labdsv/man/plot.pco.Rd | 16 +++++---
labdsv-1.4-1/labdsv/man/raretaxa.Rd |only
labdsv-1.4-1/labdsv/man/spcdisc.Rd | 2 -
labdsv-1.4-1/labdsv/man/thull.Rd |only
labdsv-1.4-1/labdsv/src/indval.f |only
labdsv-1.4-1/labdsv/src/thull.f |only
41 files changed, 314 insertions(+), 120 deletions(-)
Title: Randomization inference tools
Diff between RItools versions 0.1-8 dated 2009-07-18 and 0.1-9 dated 2010-01-08
Description: Tools for randomization inference.
Author: Jake Bowers
Maintainer: Jake Bowers
RItools-0.1-8/RItools/ToDo |only
RItools-0.1-9/RItools/DESCRIPTION | 8
RItools-0.1-9/RItools/NEWS |only
RItools-0.1-9/RItools/R/flatten.xbalresult.R |only
RItools-0.1-9/RItools/R/naImpute.R | 8
RItools-0.1-9/RItools/R/print.xbal.R | 10
RItools-0.1-9/RItools/R/xBalance.R | 10
RItools-0.1-9/RItools/R/xtable.xbal.R | 28 --
RItools-0.1-9/RItools/man/nuclearplants.Rd | 2
RItools-0.1-9/RItools/man/xBalance.Rd | 4
RItools-0.1-9/RItools/man/xtable.xbal.Rd | 10
RItools-0.1-9/RItools/tests/naImputeTests.Rout.save | 243 ++++++++------------
RItools-0.1-9/RItools/tests/xBalanceTests.R | 23 -
RItools-0.1-9/RItools/tests/xBalanceTests.Rout.save | 46 ++-
14 files changed, 185 insertions(+), 207 deletions(-)
Title: Univariate and Multivariate Spatial Modeling
Diff between spBayes versions 0.1-4 dated 2009-12-26 and 0.1-5 dated 2010-01-08
Description: spBayes fits univariate and multivariate models with
Markov chain Monte Carlo (MCMC).
Author: Andrew O. Finley
Maintainer: Andrew O. Finley
DESCRIPTION | 8 ++++----
inst/doc/spBayes-vignette.pdf |binary
src/spGLM_AMCMC.cpp | 2 +-
3 files changed, 5 insertions(+), 5 deletions(-)
Title: Detection Localization Mapping for QTL
Diff between dlmap versions 1.03 dated 2009-12-22 and 1.04 dated 2010-01-08
Description: QTL mapping in a mixed model framework with separate
detection and localization stages. The first stage detects the
number of QTL on each chromosome based on the genetic variation
due to grouped markers on the chromosome; the second stage uses
this information to determine the most likely QTL positions.
The mixed model can accommodate general fixed and random
effects, including spatial effects in field trials and pedigree
effects. Applicable to backcrosses, doubled haploids,
recombinant inbred lines, F2 intercrosses, and association
mapping populations.
Author: Emma Huang and Andrew George
Maintainer: Emma Huang
DESCRIPTION | 19 ++++++++++++++-----
R/dlmap.asreml.R | 5 ++++-
R/dlmap.lme.R | 5 ++++-
R/summary.dlcross.R | 28 +++++++++++++---------------
R/test.asreml.R | 5 ++++-
R/test.lme.R | 7 ++++++-
inst/doc/DLvignette-linkmap.eps |only
inst/doc/DLvignette-linkmap.pdf |only
inst/doc/DLvignette-pp.eps |only
inst/doc/DLvignette-pp.pdf |only
inst/doc/DLvignette.Rnw |only
inst/doc/DLvignette.pdf |binary
inst/doc/Rplots.pdf |only
man/dlcross.Rd | 2 --
man/dlmap-package.Rd | 4 ++--
man/dlmap.main.Rd | 16 ++++++++++------
man/plot.dlcross.Rd | 4 +---
man/plot.dlmap.Rd | 6 +++---
man/profileplot.Rd | 2 +-
man/summary.dlcross.Rd | 4 +---
man/summary.dlmap.Rd | 2 +-
21 files changed, 64 insertions(+), 45 deletions(-)
Title: Delaunay Triangulation and Dirichlet (Voronoi) Tessellation.
Diff between deldir versions 0.0-11 dated 2009-12-09 and 0.0-12 dated 2010-01-08
Description: Calculates the Delaunay triangulation and the Dirichlet or
Voronoi tessellation (with respect to the entire plane) of a
planar point set.
Author: Rolf Turner
Maintainer: Rolf Turner
ChangeLog | 10 ++++++++++
DESCRIPTION | 8 ++++----
R/First.R | 5 +++--
3 files changed, 17 insertions(+), 6 deletions(-)
Title: CCMN and other noRMalizatioN methods for metabolomics data
Diff between crmn versions 0.0.11 dated 2010-01-07 and 0.0.12 dated 2010-01-08
Description: Implements the Cross-contribution Compensating Multiple
standard Normalization (CCMN) method and other normalization
algorithms.
Author: Henning Redestig
Maintainer: Henning Redestig
DESCRIPTION | 8
R/norm.R | 12
inst/doc/crmn.Rnw | 6
inst/doc/crmn.pdf | 1591 ++++++++++++++++++++++++++--------------------------
man/pcaMuffle.Rd | 3
man/standardsFit.Rd | 2
6 files changed, 842 insertions(+), 780 deletions(-)
Title: Data Analysis Using Regression and Multilevel/Hierarchical
Models
Diff between arm versions 1.2-13 dated 2010-01-01 and 1.3-01 dated 2010-01-08
Description: R functions for processing lm, glm, mer and polr outputs.
Author: Andrew Gelman
Maintainer: Yu-Sung Su
CHANGELOG | 5 +++++
DESCRIPTION | 8 ++++----
R/bayesglm.R | 2 +-
3 files changed, 10 insertions(+), 5 deletions(-)
Title: CORElearn - classification, regression, feature evaluation and
ordinal evaluation
Diff between CORElearn versions 0.9.24 dated 2009-12-06 and 0.9.25 dated 2010-01-08
Description: CORElearn is machine learning suite ported to R from
standalone C++ package. It contains several model learning
techniques in classification and regression, for example
classification and regression trees with optional constructive
induction and models in the leafs, random forests, kNN, naive
Bayes, and locally weighted regression. It is especially strong
in feature evaluation algorithms where it contains several
variants of Relief algorithm and many impurity based attribute
evaluation functions, e.g., Gini, information gain, MDL, DKM,
... Its additional strength is ordEval algorithm and its
visualization used for ordinal features and class. The top
level documentation is reachable through ?CORElearn.
Author: Marko Robnik-Sikonja
Maintainer: Marko Robnik-Sikonja
ChangeLog | 3
DESCRIPTION | 8
NAMESPACE | 11
R/Rinterface.R | 903 +++++++++++++++++++++++------------------------
R/testCore.R | 425 +++++++++++++---------
R/util.R | 37 +
man/CORElearn-package.Rd | 2
man/CoreModel.Rd | 9
man/attrEval.Rd | 3
man/modelEval.Rd | 7
man/predict.CoreModel.Rd | 14
man/rfAttrEval.Rd |only
man/testCore.Rd | 45 +-
src/Rfront.cpp | 235 +++++++-----
src/Rfront.h | 15
src/binarize.cpp | 2
src/binarizeReg.cpp | 2
src/binpart.cpp | 13
src/binpart.h | 2
src/frontend.cpp | 30 -
src/ftree.cpp | 2
src/ftree.h | 2
src/rndforest.cpp | 4
src/trutil.cpp | 4
src/utils.cpp | 48 ++
src/utils.h | 5
26 files changed, 1019 insertions(+), 812 deletions(-)
Title: Better Automated ReDistricting
Diff between BARD versions 1.05 dated 2009-10-30 and 1.07 dated 2010-01-08
Description: This is a package for automated redistricting and
heuristic exploration of redistricter revealed preference
Author: Micah Altman
Maintainer: Micah Altman
CHANGELOG | 11
DESCRIPTION | 12
NAMESPACE | 7
R/bardComparison.R | 133
R/bardIO.R | 162
R/bardPlan.R | 180
R/bardScore.R | 273
TODO | 12
inst/CITATION | 4
inst/doc/Rplots.pdf |907967 +++++++++++++++++++++----------------------
inst/doc/bardJSS-plot1a.eps |127815 +++---
inst/doc/bardJSS-plot1a.pdf |238845 +++++------
inst/doc/bardJSS-plot2a.eps |605210 ++++++++++++++---------------
inst/doc/bardJSS-plot2a.pdf |664755 ++++++++++++++++----------------
inst/doc/bardJSS-plot3a.eps | 957
inst/doc/bardJSS-plot3a.pdf | 1159
inst/doc/bardJSS.log | 40
inst/doc/bardJSS.pdf |911556 +++++++++++++++++++++-----------------------
inst/doc/bardJSS.tex | 50
man/BARD.package.Rd | 18
man/createPlans.Rd | 17
man/diffPlan.Rd | 2
man/planScores.Rd | 28
man/profilePlans.Rd | 26
man/readBardCheckpoint.Rd | 1
man/readBardImage.Rd | 2
26 files changed, 1726855 insertions(+), 1732387 deletions(-)