Title: Community Ecology Package
Diff between vegan versions 1.15-4 dated 2009-09-07 and 1.17-0 dated 2010-01-11
Description: Ordination methods, diversity analysis and other functions
for community and vegetation ecologists.
Author: Jari Oksanen, F. Guillaume Blanchet, Roeland Kindt, Pierre
Legendre, R. G. O'Hara, Gavin L. Simpson, Peter Solymos, M.
Henry H. Stevens, Helene Wagner
Maintainer: Jari Oksanen
vegan-1.15-4/vegan/R/ripley.subs.R |only
vegan-1.15-4/vegan/R/ripley.subsets.R |only
vegan-1.17-0/vegan/DESCRIPTION | 15
vegan-1.17-0/vegan/R/adipart.R |only
vegan-1.17-0/vegan/R/alias.cca.R | 6
vegan-1.17-0/vegan/R/anova.ccabyaxis.R | 10
vegan-1.17-0/vegan/R/anova.ccabyterm.R | 16
vegan-1.17-0/vegan/R/as.mcmc.oecosimu.R |only
vegan-1.17-0/vegan/R/as.mcmc.permat.R |only
vegan-1.17-0/vegan/R/as.mlm.cca.R | 2
vegan-1.17-0/vegan/R/as.ts.oecosimu.R |only
vegan-1.17-0/vegan/R/as.ts.permat.R |only
vegan-1.17-0/vegan/R/betadisper.R | 16
vegan-1.17-0/vegan/R/bioenv.default.R | 2
vegan-1.17-0/vegan/R/bstick.cca.R | 6
vegan-1.17-0/vegan/R/calibrate.R |only
vegan-1.17-0/vegan/R/calibrate.ordisurf.R |only
vegan-1.17-0/vegan/R/capscale.R | 32
vegan-1.17-0/vegan/R/cca.default.R | 1
vegan-1.17-0/vegan/R/cca.formula.R | 12
vegan-1.17-0/vegan/R/decostand.R | 11
vegan-1.17-0/vegan/R/density.oecosimu.R |only
vegan-1.17-0/vegan/R/densityplot.oecosimu.R |only
vegan-1.17-0/vegan/R/drop1.cca.R | 2
vegan-1.17-0/vegan/R/envfit.default.R | 36
vegan-1.17-0/vegan/R/envfit.formula.R | 2
vegan-1.17-0/vegan/R/factorfit.R | 9
vegan-1.17-0/vegan/R/goodness.cca.R | 2
vegan-1.17-0/vegan/R/hiersimu.R |only
vegan-1.17-0/vegan/R/inertcomp.R | 4
vegan-1.17-0/vegan/R/intersetcor.R | 7
vegan-1.17-0/vegan/R/lines.permat.R |only
vegan-1.17-0/vegan/R/linestack.R | 4
vegan-1.17-0/vegan/R/metaMDSrotate.R |only
vegan-1.17-0/vegan/R/model.frame.cca.R |only
vegan-1.17-0/vegan/R/model.matrix.cca.R |only
vegan-1.17-0/vegan/R/msoplot.R | 44
vegan-1.17-0/vegan/R/nesteddisc.R | 67
vegan-1.17-0/vegan/R/oecosimu.R | 142
vegan-1.17-0/vegan/R/ordiGetData.R | 2
vegan-1.17-0/vegan/R/ordiNAexclude.R |only
vegan-1.17-0/vegan/R/ordiParseFormula.R | 81
vegan-1.17-0/vegan/R/ordiTerminfo.R | 2
vegan-1.17-0/vegan/R/ordimedian.R |only
vegan-1.17-0/vegan/R/ordiplot.R | 12
vegan-1.17-0/vegan/R/ordirgl.R | 14
vegan-1.17-0/vegan/R/ordistep.R |only
vegan-1.17-0/vegan/R/ordisurf.R | 20
vegan-1.17-0/vegan/R/orgltext.R | 4
vegan-1.17-0/vegan/R/pasteCall.R | 11
vegan-1.17-0/vegan/R/pcnm.R |only
vegan-1.17-0/vegan/R/permatfull.R | 57
vegan-1.17-0/vegan/R/permatswap.R | 175
vegan-1.17-0/vegan/R/permutest.cca.R | 6
vegan-1.17-0/vegan/R/plot.cca.R | 28
vegan-1.17-0/vegan/R/plot.contribdiv.R |only
vegan-1.17-0/vegan/R/plot.decorana.R | 7
vegan-1.17-0/vegan/R/plot.meandist.R | 44
vegan-1.17-0/vegan/R/plot.nestedtemp.R | 2
vegan-1.17-0/vegan/R/plot.permat.R | 39
vegan-1.17-0/vegan/R/plot.radfit.R | 8
vegan-1.17-0/vegan/R/predict.rda.R | 11
vegan-1.17-0/vegan/R/print.adipart.R |only
vegan-1.17-0/vegan/R/print.cca.R | 9
vegan-1.17-0/vegan/R/print.envfit.R | 2
vegan-1.17-0/vegan/R/print.hiersimu.R |only
vegan-1.17-0/vegan/R/print.oecosimu.R | 15
vegan-1.17-0/vegan/R/print.permat.R | 32
vegan-1.17-0/vegan/R/print.permutest.cca.R | 4
vegan-1.17-0/vegan/R/print.summary.permat.R | 52
vegan-1.17-0/vegan/R/print.varpart.R | 3
vegan-1.17-0/vegan/R/rarefy.R | 1
vegan-1.17-0/vegan/R/rda.formula.R | 11
vegan-1.17-0/vegan/R/scores.cca.R | 4
vegan-1.17-0/vegan/R/scores.default.R | 6
vegan-1.17-0/vegan/R/scores.lda.R |only
vegan-1.17-0/vegan/R/scores.pcnm.R |only
vegan-1.17-0/vegan/R/scores.rda.R | 4
vegan-1.17-0/vegan/R/simulate.rda.R |only
vegan-1.17-0/vegan/R/spandepth.R |only
vegan-1.17-0/vegan/R/spantree.R | 6
vegan-1.17-0/vegan/R/specaccum.R | 6
vegan-1.17-0/vegan/R/spenvcor.R | 8
vegan-1.17-0/vegan/R/summary.permat.R | 59
vegan-1.17-0/vegan/R/treedive.R | 6
vegan-1.17-0/vegan/R/treeheight.R | 2
vegan-1.17-0/vegan/R/vectorfit.R | 9
vegan-1.17-0/vegan/R/vegdist.R | 4
vegan-1.17-0/vegan/R/wcmdscale.R | 1
vegan-1.17-0/vegan/R/weights.cca.R | 8
vegan-1.17-0/vegan/R/weights.rda.R | 10
vegan-1.17-0/vegan/inst/ChangeLog | 1187 ++++--
vegan-1.17-0/vegan/inst/NEWS | 107
vegan-1.17-0/vegan/inst/doc/FAQ-vegan.pdf |binary
vegan-1.17-0/vegan/inst/doc/FAQ-vegan.texi | 4
vegan-1.17-0/vegan/inst/doc/decision-vegan.Rnw | 15
vegan-1.17-0/vegan/inst/doc/decision-vegan.pdf | 4700 ++++++++++++------------
vegan-1.17-0/vegan/inst/doc/decision-vegan.tex | 28
vegan-1.17-0/vegan/inst/doc/diversity-vegan.Rnw | 67
vegan-1.17-0/vegan/inst/doc/diversity-vegan.pdf |binary
vegan-1.17-0/vegan/inst/doc/diversity-vegan.tex | 142
vegan-1.17-0/vegan/inst/doc/intro-vegan.Rnw | 7
vegan-1.17-0/vegan/inst/doc/intro-vegan.pdf |binary
vegan-1.17-0/vegan/inst/doc/intro-vegan.tex | 68
vegan-1.17-0/vegan/man/CCorA.Rd | 2
vegan-1.17-0/vegan/man/RsquareAdj.Rd | 4
vegan-1.17-0/vegan/man/add1.cca.Rd | 24
vegan-1.17-0/vegan/man/adipart.Rd |only
vegan-1.17-0/vegan/man/adonis.Rd | 2
vegan-1.17-0/vegan/man/anosim.Rd | 2
vegan-1.17-0/vegan/man/anova.cca.Rd | 4
vegan-1.17-0/vegan/man/as.mlm.Rd | 2
vegan-1.17-0/vegan/man/beals.Rd | 37
vegan-1.17-0/vegan/man/betadisper.Rd | 31
vegan-1.17-0/vegan/man/bgdispersal.Rd | 2
vegan-1.17-0/vegan/man/bioenv.Rd | 5
vegan-1.17-0/vegan/man/capscale.Rd | 15
vegan-1.17-0/vegan/man/cascadeKM.Rd | 6
vegan-1.17-0/vegan/man/cca.Rd | 18
vegan-1.17-0/vegan/man/cca.object.Rd | 53
vegan-1.17-0/vegan/man/contribdiv.Rd | 23
vegan-1.17-0/vegan/man/decorana.Rd | 4
vegan-1.17-0/vegan/man/decostand.Rd | 23
vegan-1.17-0/vegan/man/designdist.Rd | 2
vegan-1.17-0/vegan/man/envfit.Rd | 23
vegan-1.17-0/vegan/man/goodness.cca.Rd | 9
vegan-1.17-0/vegan/man/indpower.Rd | 2
vegan-1.17-0/vegan/man/isomap.Rd | 6
vegan-1.17-0/vegan/man/kendall.global.Rd | 8
vegan-1.17-0/vegan/man/make.cepnames.Rd | 2
vegan-1.17-0/vegan/man/mantel.Rd | 4
vegan-1.17-0/vegan/man/metaMDS.Rd | 51
vegan-1.17-0/vegan/man/model.matrix.cca.Rd |only
vegan-1.17-0/vegan/man/mrpp.Rd | 28
vegan-1.17-0/vegan/man/nestedtemp.Rd | 57
vegan-1.17-0/vegan/man/oecosimu.Rd | 94
vegan-1.17-0/vegan/man/ordihull.Rd | 6
vegan-1.17-0/vegan/man/ordilabel.Rd | 2
vegan-1.17-0/vegan/man/ordiplot3d.Rd | 8
vegan-1.17-0/vegan/man/ordipointlabel.Rd | 4
vegan-1.17-0/vegan/man/ordiresids.Rd | 2
vegan-1.17-0/vegan/man/ordistep.Rd |only
vegan-1.17-0/vegan/man/ordisurf.Rd | 14
vegan-1.17-0/vegan/man/orditkplot.Rd | 6
vegan-1.17-0/vegan/man/ordixyplot.Rd | 2
vegan-1.17-0/vegan/man/pcnm.Rd |only
vegan-1.17-0/vegan/man/permatfull.Rd | 186
vegan-1.17-0/vegan/man/permuted.index2.Rd | 2
vegan-1.17-0/vegan/man/permutest.betadisper.Rd | 8
vegan-1.17-0/vegan/man/predict.cca.Rd | 9
vegan-1.17-0/vegan/man/renyi.Rd | 4
vegan-1.17-0/vegan/man/scores.Rd | 1
vegan-1.17-0/vegan/man/simulate.rda.Rd |only
vegan-1.17-0/vegan/man/spantree.Rd | 22
vegan-1.17-0/vegan/man/specaccum.Rd | 4
vegan-1.17-0/vegan/man/specpool.Rd | 4
vegan-1.17-0/vegan/man/taxondive.Rd | 6
vegan-1.17-0/vegan/man/treedive.Rd | 4
vegan-1.17-0/vegan/man/tsallis.Rd | 8
vegan-1.17-0/vegan/man/varechem.Rd | 2
vegan-1.17-0/vegan/man/varpart.Rd | 10
vegan-1.17-0/vegan/man/vegan-internal.Rd | 33
vegan-1.17-0/vegan/man/vegdist.Rd | 39
vegan-1.17-0/vegan/man/vegemite.Rd | 2
vegan-1.17-0/vegan/src/nestedness.c | 125
vegan-1.17-0/vegan/src/vegdist.c | 43
166 files changed, 5265 insertions(+), 3392 deletions(-)
Title: Urn : Sampling Without Replacement
Diff between urn versions 2.1 dated 2010-01-10 and 2.2.1 dated 2010-01-11
Description: Functions for sampling without replacement. (Simulated
Urns).
Author: Micah Altman
Maintainer: Micah Altman
CHANGELOG | 4 +++-
DESCRIPTION | 10 +++++-----
2 files changed, 8 insertions(+), 6 deletions(-)
Title: Spherical k-Means Clustering
Diff between skmeans versions 0.1-3 dated 2010-01-09 and 0.1-4 dated 2010-01-11
Description: Algorithms to compute spherical k-means partitions.
Features several methods, including a genetic and a simple
fixed-point algorithm and an interface to the CLUTO vcluster
program.
Author: Kurt Hornik, Ingo Feinerer, Martin Kober
Maintainer: Kurt Hornik
DESCRIPTION | 8 ++++----
R/skmeans.R | 19 +++++++++++++++++--
2 files changed, 21 insertions(+), 6 deletions(-)
Title: k-Nearest Neighbor Diagnostic Tools
Diff between nnDiag versions 0.0-4 dated 2009-11-25 and 0.0-5 dated 2010-01-11
Description: A suite of graphical diagnostic tools to evaluate kNN
classifications.
Author: Brian Walters
Maintainer: Brian Walters
DESCRIPTION | 8 ++++----
man/nnDiag-package.Rd | 4 ++--
src/knnvarfun.cpp | 10 +++++-----
3 files changed, 11 insertions(+), 11 deletions(-)
Title: Meta-Analysis with R
Diff between meta versions 1.1-5 dated 2009-12-21 and 1.1-7 dated 2010-01-11
Description: Fixed and random effects meta-analysis. Functions for
tests of bias, forest and funnel plot.
Author: Guido Schwarzer
Maintainer: Guido Schwarzer
ChangeLog | 15 +++++++++++++++
DESCRIPTION | 8 ++++----
R/forest.R | 18 ++++++++++++++----
R/metabin.R | 11 +++++++++--
R/metacont.R | 11 +++++++++--
R/metagen.R | 11 +++++++++--
R/metaprop.R | 11 +++++++++--
7 files changed, 69 insertions(+), 16 deletions(-)
Title: Efficient selection of undirected graphical models for
high-dimensional datasets
Diff between gRapHD versions 0.1.0 dated 2009-09-21 and 0.1.3 dated 2010-01-11
Description: gRapHD is designed for efficient selection of
high-dimensional undirected graphical models. The package
provides tools for selecting trees, forests and decomposable
models minimizing information criteria such as AIC or BIC, and
for displaying the independence graphs of the models. It has
also some useful tools for analysing graphical structures. It
supports the use of discrete, continuous, or both types of
variables.
Author: Gabriel Coelho Goncalves de Abreu
Maintainer: Gabriel Coelho Goncalves de Abreu
DESCRIPTION | 7
NAMESPACE | 3
R/functions.r | 541 ++++++++++++++++++++++++++++++++++++++-------------
inst/CITATION | 3
man/SubGraph.rd | 6
man/as.gRapHD.rd | 3
man/convData.rd | 2
man/findEd.rd | 9
man/minForest.Rd | 14 -
man/neighbourhood.rd | 3
man/plot.gRapHD.rd |only
man/plotG.rd | 35 ---
man/randTree.rd | 2
man/stepw.rd | 12 -
src/findEd.c | 41 ++-
src/minForest.c | 63 +++--
16 files changed, 514 insertions(+), 230 deletions(-)
Title: Multidimensional Numerical Integration
Diff between R2Cuba versions 1.0-0 dated 2010-01-06 and 1.0-1 dated 2010-01-11
Description: R2Cuba implements four general-purpose multidimensional
integration algorithms: Vegas, Suave, Divonne and Cuhre
Author: The Cuba library has been written by Thomas Hahn
Maintainer: Annie Bouvier
R2Cuba-1.0-0/R2Cuba/man/ARCHIVES |only
R2Cuba-1.0-0/R2Cuba/src/common_ChiSquare.c |only
R2Cuba-1.0-0/R2Cuba/src/common_Erf.c |only
R2Cuba-1.0-0/R2Cuba/src/cuhre_util.c |only
R2Cuba-1.0-0/R2Cuba/src/divonne_util.c |only
R2Cuba-1.0-0/R2Cuba/src/suave_util.c |only
R2Cuba-1.0-0/R2Cuba/tests/ARCHIVES |only
R2Cuba-1.0-1/R2Cuba/DESCRIPTION | 8 ++++----
R2Cuba-1.0-1/R2Cuba/src/common_ChiSquare.h |only
R2Cuba-1.0-1/R2Cuba/src/common_Erf.h |only
R2Cuba-1.0-1/R2Cuba/src/common_RCuba.c | 8 ++++----
R2Cuba-1.0-1/R2Cuba/src/common_Random.h | 3 +++
R2Cuba-1.0-1/R2Cuba/src/common_debug.h | 4 +++-
R2Cuba-1.0-1/R2Cuba/src/common_stddecl.h | 1 -
R2Cuba-1.0-1/R2Cuba/src/cuhre_Cuhre.c | 2 +-
R2Cuba-1.0-1/R2Cuba/src/cuhre_Integrate.h | 4 ++++
R2Cuba-1.0-1/R2Cuba/src/cuhre_Rule.h | 6 +++++-
R2Cuba-1.0-1/R2Cuba/src/cuhre_common.h | 6 +++++-
R2Cuba-1.0-1/R2Cuba/src/cuhre_decl.h | 4 ++--
R2Cuba-1.0-1/R2Cuba/src/cuhre_util.h |only
R2Cuba-1.0-1/R2Cuba/src/divonne_Divonne.c | 2 +-
R2Cuba-1.0-1/R2Cuba/src/divonne_Explore.h | 7 ++++++-
R2Cuba-1.0-1/R2Cuba/src/divonne_FindMinimum.h | 5 ++++-
R2Cuba-1.0-1/R2Cuba/src/divonne_Integrate.h | 3 +++
R2Cuba-1.0-1/R2Cuba/src/divonne_KorobovCoeff.h | 3 +++
R2Cuba-1.0-1/R2Cuba/src/divonne_Rule.h | 3 +++
R2Cuba-1.0-1/R2Cuba/src/divonne_Sample.h | 4 ++++
R2Cuba-1.0-1/R2Cuba/src/divonne_Split.h | 3 +++
R2Cuba-1.0-1/R2Cuba/src/divonne_common.h | 7 ++++++-
R2Cuba-1.0-1/R2Cuba/src/divonne_decl.h | 5 +++--
R2Cuba-1.0-1/R2Cuba/src/divonne_util.h |only
R2Cuba-1.0-1/R2Cuba/src/inclR.h | 4 ++++
R2Cuba-1.0-1/R2Cuba/src/suave_Fluct.h | 3 +++
R2Cuba-1.0-1/R2Cuba/src/suave_Grid.h | 3 +++
R2Cuba-1.0-1/R2Cuba/src/suave_Integrate.h | 4 ++++
R2Cuba-1.0-1/R2Cuba/src/suave_Sample.h | 5 ++++-
R2Cuba-1.0-1/R2Cuba/src/suave_Suave.c | 2 +-
R2Cuba-1.0-1/R2Cuba/src/suave_common.h | 5 ++++-
R2Cuba-1.0-1/R2Cuba/src/suave_decl.h | 4 ++--
R2Cuba-1.0-1/R2Cuba/src/suave_util.h |only
R2Cuba-1.0-1/R2Cuba/src/vegas_Grid.h | 3 +++
R2Cuba-1.0-1/R2Cuba/src/vegas_Integrate.h | 4 ++--
R2Cuba-1.0-1/R2Cuba/src/vegas_common.h | 6 ++++--
R2Cuba-1.0-1/R2Cuba/src/vegas_decl.h | 4 ++--
R2Cuba-1.0-1/R2Cuba/src/vegas_util.h | 4 ++--
45 files changed, 105 insertions(+), 34 deletions(-)
Title: Forecast verification utilities.
Diff between verification versions 1.30 dated 2009-08-04 and 1.31 dated 2010-01-11
Description: This package contains utilities for verification of
discrete,continuous, probabilistic forecasts and forecast
expressed as parametric distributions.
Author: NCAR - Research Application Program
Maintainer: Matt Pocernich
verification-1.30/verification/R/brier.r |only
verification-1.31/verification/ChangeLog | 5 +++
verification-1.31/verification/DESCRIPTION | 8 ++---
verification-1.31/verification/R/brier.R |only
verification-1.31/verification/R/roc.area.r | 4 ++
verification-1.31/verification/R/summary.bin.bin.R | 8 +++++
verification-1.31/verification/R/table.stats.R | 21 ++++++++-------
verification-1.31/verification/inst/doc/verification.pdf |binary
verification-1.31/verification/man/plot.int.scale.Rd | 2 -
verification-1.31/verification/man/roc.plot.Rd | 4 ++
verification-1.31/verification/man/table.stats.Rd | 19 ++++++++++++-
verification-1.31/verification/man/verify.Rd | 18 ++++++++++--
12 files changed, 67 insertions(+), 22 deletions(-)
Title: Multivariate ECDF Based Models
Diff between mecdf versions 0.2.1 dated 2009-12-09 and 0.3.0 dated 2010-01-11
Description: Univariate and multivariate empirical cumulative
distribution functions (ECDFs), including both step functions
(true ECDFs) and continuous functions (via interpolation). Plus
special purpose functions for plotting univariate and bivariate
ECDFs.
Author: CHARLOTTE MAIA
Maintainer: Charlotte Maia
mecdf-0.2.1/mecdf/R/plot.r |only
mecdf-0.2.1/mecdf/man/bcdf.plot.Rd |only
mecdf-0.3.0/mecdf/DESCRIPTION | 16 +-
mecdf-0.3.0/mecdf/R/interpolate.r |only
mecdf-0.3.0/mecdf/R/mecdf.r | 99 ++++++++----
mecdf-0.3.0/mecdf/R/plotbcdf.r |only
mecdf-0.3.0/mecdf/inst/doc/mecdf.pdf |binary
mecdf-0.3.0/mecdf/inst/doc/mecdf.rnw | 279 ++++++++++++++++++++++++-----------
mecdf-0.3.0/mecdf/man/mecdf.Rd | 14 +
mecdf-0.3.0/mecdf/man/plotbcdf.Rd |only
10 files changed, 275 insertions(+), 133 deletions(-)
Title: Frailty models using maximum penalized likelihood estimation
Diff between frailtypack versions 2.2-9.5 dated 2009-10-23 and 2.2-12 dated 2010-01-11
Description: Frailtypack now fits several classes of frailty models
using Penalized Likelihood on the hazard function. 1) A shared
gamma frailty model and Cox proportional hazards model. Left
truncated, censored data and strata (max=2) are allowed.
Clustered and recurrent survival times can be studied (the
Andersen-Gill(1982) approach has been implemented for recurrent
events). An automatic choice of the smoothing parameter is
possible using an approximated cross-validation procedure. 2)
Additive frailty models for proportional hazards models with
two correlated random effects (intercept random effect with
random slope). 3) Nested frailty models for hierarchically
clustered data (with 2 levels of clustering) by including two
iid gamma random effects. 4) Joint frailty models in the
context of joint modelling of recurrent events with terminal
event.
Author: Juan R González, Virginie Rondeau
Maintainer: Juan R Gonzalez
frailtypack-2.2-12/frailtypack/DESCRIPTION | 8
frailtypack-2.2-12/frailtypack/R/additivePenal.R | 4
frailtypack-2.2-12/frailtypack/R/frailtyPenal.R | 54
frailtypack-2.2-12/frailtypack/data/filelist | 1
frailtypack-2.2-12/frailtypack/data/readmission.R | 1300 +++++++--------
frailtypack-2.2-12/frailtypack/inst |only
frailtypack-2.2-12/frailtypack/man/JointfrailtyPenal.Rd | 46
frailtypack-2.2-12/frailtypack/man/NestedfrailtyPenal.Rd | 7
frailtypack-2.2-12/frailtypack/man/additivePenal.Rd | 6
frailtypack-2.2-12/frailtypack/man/frailtyPenal.Rd | 11
frailtypack-2.2-12/frailtypack/man/plotJointPenal.Rd | 28
frailtypack-2.2-12/frailtypack/man/printJointPenal.Rd | 16
frailtypack-2.2-12/frailtypack/man/readmission.Rd | 3
frailtypack-2.2-12/frailtypack/man/summaryJointPenal.Rd | 26
frailtypack-2.2-12/frailtypack/src/additive.f | 70
frailtypack-2.2-12/frailtypack/src/frailtypack.f | 16
frailtypack-2.2-12/frailtypack/src/joint.f | 36
frailtypack-2.2-12/frailtypack/src/nested.f | 56
frailtypack-2.2-9.5/frailtypack/data/dataJoint.R |only
frailtypack-2.2-9.5/frailtypack/man/dataJoint.Rd |only
20 files changed, 910 insertions(+), 778 deletions(-)
Title: Functions for spatial point pattern analysis
Diff between ecespa versions 1.1-2 dated 2009-08-25 and 1.1-3 dated 2010-01-11
Description: Some wrappers, functions and data sets for for spatial
point pattern analysis (mainly based on spatstat), used in the
book "Introduccion al Analisis Espacial de Datos en Ecologia y
Ciencias Ambientales: Metodos y Aplicaciones".
Author: Marcelino de la Cruz Rot, Philip M. Dixon and Jose M.
Blanco-Moreno
Maintainer: Marcelino de la Cruz Rot
ecespa-1.1-2/ecespa/NAMESPACE |only
ecespa-1.1-2/ecespa/R/funciones_Ecespa_1-1-0.R |only
ecespa-1.1-3/ecespa/DESCRIPTION | 12 ++--
ecespa-1.1-3/ecespa/R/NNid.R | 8 +-
ecespa-1.1-3/ecespa/inst/CITATION | 1
ecespa-1.1-3/ecespa/man/00ecespa.Rd | 52 ++++---------------
ecespa-1.1-3/ecespa/man/Kci.Rd | 12 ++--
ecespa-1.1-3/ecespa/man/ipc.estK.Rd | 67 ++++++++++++++++---------
ecespa-1.1-3/ecespa/man/marksum.rd | 2
ecespa-1.1-3/ecespa/man/pc.estK.rd | 4 -
10 files changed, 75 insertions(+), 83 deletions(-)
Title: Detection Localization Mapping for QTL
Diff between dlmap versions 1.04 dated 2010-01-08 and 1.06 dated 2010-01-11
Description: QTL mapping in a mixed model framework with separate
detection and localization stages. The first stage detects the
number of QTL on each chromosome based on the genetic variation
due to grouped markers on the chromosome; the second stage uses
this information to determine the most likely QTL positions.
The mixed model can accommodate general fixed and random
effects, including spatial effects in field trials and pedigree
effects. Applicable to backcrosses, doubled haploids,
recombinant inbred lines, F2 intercrosses, and association
mapping populations.
Author: Emma Huang and Andrew George
Maintainer: Emma Huang
DESCRIPTION | 8 ++++----
R/test.asreml.R | 6 ++++--
R/test.lme.R | 8 +++++---
inst/doc/DLvignette.pdf |binary
inst/doc/Rplots.pdf | 4 ++--
man/dlmap-package.Rd | 4 ++--
6 files changed, 17 insertions(+), 13 deletions(-)
Title: CORElearn - classification, regression, feature evaluation and
ordinal evaluation
Diff between CORElearn versions 0.9.25 dated 2010-01-08 and 0.9.26 dated 2010-01-11
Description: CORElearn is machine learning suite ported to R from
standalone C++ package. It contains several model learning
techniques in classification and regression, for example
classification and regression trees with optional constructive
induction and models in the leafs, random forests, kNN, naive
Bayes, and locally weighted regression. It is especially strong
in feature evaluation algorithms where it contains several
variants of Relief algorithm and many impurity based attribute
evaluation functions, e.g., Gini, information gain, MDL, DKM,
... Its additional strength is ordEval algorithm and its
visualization used for ordinal features and class. The top
level documentation is reachable through ?CORElearn.
Author: Marko Robnik-Sikonja
Maintainer: Marko Robnik-Sikonja
ChangeLog | 1
DESCRIPTION | 8 +--
man/CORElearn-package.Rd | 2
src/Rconvert.cpp | 30 ++++++------
src/Rfront.cpp | 14 ++---
src/binarize.cpp | 8 +--
src/binarizeReg.cpp | 8 +--
src/binpart.cpp | 2
src/dataStore.h | 2
src/estimator.cpp | 112 +++++++++++++++++++++++------------------------
src/estimatorReg.cpp | 6 +-
src/frontend.cpp | 2
src/rndforest.cpp | 14 ++---
src/rrelieff.cpp | 34 +++++++-------
src/trutilReg.cpp | 2
15 files changed, 123 insertions(+), 122 deletions(-)