Title: Enhanced routines for plotting and analyzing valued relational
data.
Diff between ElectroGraph versions 0.1 dated 2009-06-28 and 0.1.1 dated 2010-01-15
Description: This package contains routines and procedures for
relational data, namely considerations for valued ties. In
particular, relative distances are calculated using social
conductance methods.
Author: Andrew C. Thomas
Maintainer: Andrew C. Thomas
ElectroGraph-0.1.1/ElectroGraph/DESCRIPTION | 10
ElectroGraph-0.1.1/ElectroGraph/NAMESPACE | 3
ElectroGraph-0.1.1/ElectroGraph/R/electro-specific.R | 94 ++-
ElectroGraph-0.1.1/ElectroGraph/R/electrograph-routines.R | 28
ElectroGraph-0.1.1/ElectroGraph/R/plot-routines.R | 39 -
ElectroGraph-0.1.1/ElectroGraph/man/ElectroGraph-package.Rd | 2
ElectroGraph-0.1.1/ElectroGraph/man/animate.plot.series.Rd | 2
ElectroGraph-0.1.1/ElectroGraph/man/clustering.statistics.Rd |only
ElectroGraph-0.1.1/ElectroGraph/man/electrograph.Rd | 2
ElectroGraph-0.1.1/ElectroGraph/man/electrograph.exam.Rd | 2
ElectroGraph-0.1.1/ElectroGraph/man/geodesic.mat.Rd | 2
ElectroGraph-0.1.1/ElectroGraph/man/get.resistance.Rd | 2
ElectroGraph-0.1.1/ElectroGraph/man/make.sociomatrix.from.edges.Rd | 2
ElectroGraph-0.1.1/ElectroGraph/man/make.sociomatrix.from.lattice.Rd | 2
ElectroGraph-0.1.1/ElectroGraph/man/network.components.Rd | 11
ElectroGraph-0.1.1/ElectroGraph/man/network.layout.Rd | 2
ElectroGraph-0.1.1/ElectroGraph/man/pair.sequence.Rd | 2
ElectroGraph-0.1.1/ElectroGraph/man/plot.electrograph.Rd | 4
ElectroGraph-0.1.1/ElectroGraph/man/plot.wedding.cake.Rd | 2
ElectroGraph-0.1.1/ElectroGraph/man/summary.electrograph.Rd | 2
ElectroGraph-0.1.1/ElectroGraph/src/electrograph-routines.cpp | 286 +++++-----
ElectroGraph-0.1.1/ElectroGraph/src/layout-adapted-2.cpp |only
ElectroGraph-0.1/ElectroGraph/src/layout-adapted.cpp |only
23 files changed, 308 insertions(+), 191 deletions(-)
Title: Phylogenetic analysis in R
Diff between phangorn versions 0.99-4 dated 2009-11-27 and 0.99-5 dated 2010-01-15
Description: Phylogenetic analysis in R (Estimation of phylogenetic
trees and networks using Maximum Likelihood, Maximum Parsimony,
Distance methods & Hadamard conjugation)
Author: Klaus Schliep
Maintainer: Klaus Schliep
ChangeLog | 40 +
DESCRIPTION | 9
NAMESPACE | 4
R/phylo.R | 1070 ++++++++++++++++++++++++-------------------
inst/doc/Rplots.pdf | 280 ++++++++++-
inst/doc/Trees.R |only
inst/doc/Trees.Rnw | 385 ++++++++-------
inst/doc/Trees.pdf |binary
man/Ancestors.Rd |only
man/bootstrap.pml.Rd | 119 +++-
man/pmlCluster.Rd | 134 ++---
src/init.c | 2
src/phangorn.c | 1250 +++++++++++++++++++++++++++------------------------
src/phangorn.h | 6
14 files changed, 1948 insertions(+), 1351 deletions(-)
Title: YourCast
Diff between YourCast versions 1.1-5 dated 2009-10-05 and 1.1-6 dated 2010-01-15
Description: YourCast makes time series cross-sectional forecasts with
multiple cross-sections based on your assumptions. It allows a
variety of smoothing assumptions based on similarities among
the levels, trends, or interactions in the expected value of
the dependent variable rather than the coefficients. YourCast
implements ideas in the book Federico Girosi and Gary King.
DEMOGRAPHIC FORECASTING. Princeton University Press, 2008; see
http://gking.harvard.edu/files/smooth/
Author: Federico Girosi
Maintainer: Gary King
DESCRIPTION | 8
R/plot.yourcast.R | 538 ++++++++++++++++++++++++---------------------------
inst/doc/copyRd.Rout | 4
inst/doc/index.shtml | 2
man/plot.yourcast.Rd | 76 ++++---
5 files changed, 305 insertions(+), 323 deletions(-)
Title: Interface between GRASS 6 geographical information system and R
Diff between spgrass6 versions 0.6-12 dated 2009-11-15 and 0.6-14 dated 2010-01-15
Description: Interpreted interface between GRASS 6 geographical
information system and R, based on starting R from within the
GRASS environment, or running free-standing R in a temporary
GRASS location; the package provides facilities for using all
GRASS commands from the R command line.
Author: Roger Bivand
Maintainer: Roger Bivand
ChangeLog | 12 ++++++++++++
DESCRIPTION | 10 +++++-----
R/initGRASS.R | 11 ++++++-----
R/vect_link.R | 5 +++--
inst/ChangeLog | 12 ++++++++++++
man/initGRASS.Rd | 4 ++--
6 files changed, 40 insertions(+), 14 deletions(-)
Title: Segregation measures for multitype spatial point patterns
Diff between spatialsegregation versions 2.11 dated 2009-09-28 and 2.12 dated 2010-01-15
More information about spatialsegregation at CRAN
Description: Summaries for measuring segregation/mingling in multitype
spatial point patterns with graph based neighbourhood
description. Included indices: Mingling, Shannon, Simpson (also
the non-spatial) Included functionals: Mingling, Shannon,
Simpson, ISAR. Included neighbourhoods: Geometric, k-nearest
neighbours, Gabriel, Delauney.
Author: Tuomas Rajala
Maintainer: Tuomas Rajala
DESCRIPTION | 8 ++++----
change.log | 4 ++++
src/Graph.cpp | 9 +++++----
src/other.cpp | 2 +-
src/shannon.cpp | 4 ++--
src/simpson.cpp | 3 ++-
6 files changed, 18 insertions(+), 12 deletions(-)
Permanent link
Title: Graphs for spatial point patterns
Diff between spatgraphs versions 2.30 dated 2009-11-12 and 2.31 dated 2010-01-15
Description: Graphs, graph visualization and graph component
calculations, ment to be used as a tool in spatial point
pattern analysis. See package 'spatstat' for more info about
spatial point patterns.
Author: Tuomas Rajala
Maintainer: Tuomas Rajala
DESCRIPTION | 8 ++++----
INDEX | 25 +++++++++++--------------
change.log | 3 +++
src/clustering.cpp | 2 +-
src/dists.cpp | 2 +-
src/dists.h | 12 ++++++------
6 files changed, 26 insertions(+), 26 deletions(-)
Title: a tentative logging package
Diff between logging versions 0.1-8996 dated 2010-01-15 and 0.2-9014 dated 2010-01-15
Description: a logging package emulating the python logging package.
Author: Mario Frasca
Maintainer: Mario Frasca
DESCRIPTION | 6 +++---
DESCRIPTION.template | 2 +-
R/aptions.R | 13 +++++--------
R/logger.R | 10 ++++------
R/version.R | 6 +++---
cleanup | 2 +-
dist/logging.tar.gz |binary
man/logging.addHandler.Rd | 3 ++-
man/logging.module.Rd | 9 +++++----
9 files changed, 24 insertions(+), 27 deletions(-)
Title: R interface to the QuantLib library
Diff between RQuantLib versions 0.3.1 dated 2009-12-13 and 0.3.2 dated 2010-01-15
Description: The RQuantLib package makes parts of QuantLib visible to
the R user. Currently a number option pricing functions are
included, both vanilla and exotic, as well as a broad range of
fixed-income functions, as well a general calendaring and
holiday utilities. Further software contributions are welcome.
The QuantLib project aims to provide a comprehensive software framework
for quantitative finance. The goal is to provide a standard
open source library for quantitative analysis, modeling,
trading, and risk management of financial assets.
The Windows binary version is self-contained and does not require a
QuantLib (or Boost) installation.
RQuantLib uses the Rcpp R/C++ interface class library. See the Rcpp
package on CRAN (or R-Forge) for more information on Rcpp.
Note that while RQuantLib's code is licensed under the GPL (v2 or
later), QuantLib itself is released under a somewhat less
restrictive Open Source license (see QuantLib-License.txt).
Author: Dirk Eddelbuettel
Maintainer: Dirk Eddelbuettel
DESCRIPTION | 15 -
INDEX | 10 +
R/calendars.R | 131 +++++++++++++
R/dayCounter.R |only
configure.in | 4
inst/ChangeLog | 46 ++++
man/adjust.Rd |only
man/advance.Rd |only
man/businessDaysBetween.Rd |only
man/dayCount.Rd |only
man/endOfMonth.Rd |only
man/holidayList.Rd |only
man/isEndOfMonth.Rd |only
man/isHoliday.Rd |only
man/isWeekend.Rd |only
man/yearFraction.Rd |only
src/asian.cpp | 4
src/barrier_binary.cpp | 8
src/bermudan.cpp | 4
src/bonds.cpp | 52 ++---
src/calendars.cpp | 429 ++++++++++++++++++++++++++++++++++++++++++++-
src/daycounter.cpp |only
src/discount.cpp | 12 -
src/implieds.cpp | 6
src/rquantlib.hpp | 8
src/utils.cpp | 58 +++++-
src/vanilla.cpp | 6
27 files changed, 730 insertions(+), 63 deletions(-)
Title: Joint Modelling of Mean and Dispersion
Diff between JointModeling versions 1.0-0 dated 2006-11-02 and 1.0-2 dated 2010-01-15
Description: Some functions useful to perform joint modelling of Mean
and Dispersion through two interlinked GLM's or GAM's.
Author: Mathieu Ribatet
Maintainer: Bertrand Iooss
JointModeling-1.0-0/JointModeling/man/hat.glm.Rd |only
JointModeling-1.0-2/JointModeling/ChangeLog | 25
JointModeling-1.0-2/JointModeling/DESCRIPTION | 24
JointModeling-1.0-2/JointModeling/R/fromMgcv.R | 698 +++++++----------
JointModeling-1.0-2/JointModeling/R/generics.R | 21
JointModeling-1.0-2/JointModeling/R/graphics.R | 26
JointModeling-1.0-2/JointModeling/R/joint.gam.R | 10
JointModeling-1.0-2/JointModeling/R/joint.glm.R | 23
JointModeling-1.0-2/JointModeling/man/joint.glm.Rd | 19
JointModeling-1.0-2/JointModeling/man/summary.joint.Rd | 2
10 files changed, 410 insertions(+), 438 deletions(-)
Title: Robust Covariance Matrix Estimators
Diff between sandwich versions 2.2-4 dated 2009-12-07 and 2.2-5 dated 2010-01-15
Description: Model-robust standard error estimators for
cross-sectional, time series and longitudinal data.
Author: Thomas Lumley, Achim Zeileis
Maintainer: Achim Zeileis
DESCRIPTION | 8 ++++----
NEWS | 6 ++++++
R/estfun.R | 28 ++++++++++++++++++++++------
inst/doc/sandwich-OOP.Rnw | 6 +++---
inst/doc/sandwich-OOP.pdf |binary
inst/doc/sandwich.Rnw | 6 +++---
inst/doc/sandwich.pdf |binary
7 files changed, 38 insertions(+), 16 deletions(-)
Title: A graphical user interface for data mining in R using GTK
Diff between rattle versions 2.5.14 dated 2010-01-10 and 2.5.15 dated 2010-01-15
Description: Rattle (the R Analytic Tool To Learn Easily) provides a
Gnome (RGtk2) based interface to R functionality for data
mining. The aim is to provide a simple and intuitive interface
that allows a user to quickly load data from a CSV file (or via
ODBC), transform and explore the data, build and evaluate
models, and export models as PMML (predictive modelling markup
language) or as scores. All of this with knowing little about
R. All R commands are logged and commented through the log tab
and so available to the user as a script file or as an aide to
the user to interact directly with R itself. Rattle also
exports a number of utility functions and the graphical user
interface, invoked as rattle(), does not need to be run to
deploy these.
Author: Graham Williams
Maintainer: Graham Williams
DESCRIPTION | 8
R/data.R | 147 +-
R/evaluate.R | 481 +++----
R/kmeans.R | 4
R/model.R | 11
R/random_forest.R | 6
R/rattle.R | 28
R/rpart.R | 8
R/tooltips.R | 9
R/zzz.R | 15
inst/etc/rattle.glade | 67 -
inst/etc/tooltips.xml | 649 ++++++---
inst/po/ja/LC_MESSAGES/R-rattle.mo |binary
po/Makefile | 4
po/R-ja.po | 2459 ++++++++++++++++++++++++++++++------
po/R-ja.poi | 2479 ++++++++++++++++++++++++++++++-------
po/R-ja.poi.100110123843 |only
po/R-ja.poi.100110142602 |only
po/R-ja.poi.100110150856 |only
po/R-ja.poi.100110152605 |only
po/R-ja.poi.100110153059 |only
po/R-ja.poi.100110160134 |only
po/R-ja.poi.100110160335 |only
po/R-ja.poi.100110160345 |only
po/R-ja.poi.100110160424 |only
po/R-ja.poi.100111205954 |only
po/messages.pot | 1998 ++++++++++++++++++++++++-----
po/new.poi | 2459 ++++++++++++++++++++++++++++++------
28 files changed, 8651 insertions(+), 2181 deletions(-)
Title: A GUI for interactive plots using GTK+
Diff between playwith versions 0.9-44 dated 2009-05-24 and 0.9-45 dated 2010-01-15
Description: A GTK+ graphical user interface for editing and
interacting with R plots.
Author: Felix Andrews
Maintainer: Felix Andrews
DESCRIPTION | 8 ++++----
R/apiData.R | 2 +-
R/apiIdentify.R | 16 +++++++++++++---
R/apiMain.R | 15 ++++++++-------
R/autoplay.R | 26 +++++++++++++++++---------
R/gridwork.R | 35 ++++++++++++++++++++---------------
R/playwith.R | 11 ++++++++---
R/settings.R | 2 +-
R/uiClickActions.R | 25 +++++++++++++++----------
R/uiGlobalActions.R | 4 ++--
R/uiIdentifyActions.R | 4 ++--
R/uiOptionsActions.R | 22 +++++++++++++---------
R/uiPlotActions.R | 2 +-
inst/NEWS | 17 +++++++++++++++++
man/convertFromDevicePixels.Rd | 3 ++-
man/identifyGrob.Rd | 8 ++++----
man/playwith.options.Rd | 7 ++++---
17 files changed, 132 insertions(+), 75 deletions(-)
Title: Non-linear mixed-effects modelling in nlme using differential
equations
Diff between nlmeODE versions 0.3-1 dated 2007-07-07 and 1.0 dated 2010-01-15
Description: This package combines the odesolve and nlme packages for
mixed-effects modelling using differential equations.
Author: Christoffer W. Tornoe
Maintainer: Christoffer W. Tornoe
DESCRIPTION | 26 +++++++++++++++-----------
man/nlmeODE.Rd | 43 ++++++++++---------------------------------
2 files changed, 25 insertions(+), 44 deletions(-)
Title: Palaeoecological and Palaeogeographical Analysis Tools
Diff between fossil versions 0.2.3 dated 2009-12-13 and 0.2.4 dated 2010-01-15
Description: A set of analytical tools useful in analysing ecological
and geographical data sets, both ancient and modern. The
package includes functions for estimating species richness
(Chao 1 and 2, ACE, ICE, Jacknife), shared species/beta
diversity, species area curves and geographic distances and
areas.
Author: Matthew Vavrek
Maintainer: Matthew Vavrek
DESCRIPTION | 10 +++++-----
R/spp.est.R | 28 ++++++++++++++++------------
data |only
man/ace.Rd | 4 ++--
man/chao.sd.rd | 7 +++++--
man/chao.sorenson.Rd | 7 ++++++-
man/chao1.Rd | 16 ++++++++++++++--
man/create.lats.Rd | 1 -
man/deg.dist.Rd | 4 ++--
man/dino.dist.Rd | 13 ++++++-------
man/spp.est.Rd | 15 ++++++++++++---
man/sppexample.Rd |only
12 files changed, 68 insertions(+), 37 deletions(-)