Title: Linear Models for Panel Data
Diff between plm versions 1.2-1 dated 2009-09-29 and 1.2-3 dated 2010-01-26
Description: A set of estimators and tests for panel data.
Author: Yves Croissant
Maintainer: Yves Croissant
DESCRIPTION | 8
NAMESPACE | 13
R/dynformula.R | 12
R/pfunctions.R | 13
R/pgmm.R | 70 +
R/pgmm.methods.R | 7
R/pserial.R | 32
R/purtest.R |only
R/pvcovHC.R | 337 +++++----
R/vcovBK.R |only
R/vcovSCC.R |only
THANKS | 8
changelog | 38 -
inst/doc/plm.R |only
inst/doc/plm.pdf | 1766 ++++++++++++++++++++++++-------------------------
inst/doc/purtest.aux |only
inst/doc/purtest.dvi |only
inst/doc/purtest.log |only
inst/doc/purtest.tex |only
man/Cigar.Rd | 22
man/Crime.Rd | 32
man/EmplUK.Rd | 20
man/Gasoline.Rd | 23
man/Grunfeld.Rd | 27
man/Hedonic.Rd | 26
man/LaborSupply.Rd | 20
man/Males.Rd | 38 -
man/Produc.Rd | 28
man/Snmesp.Rd | 52 -
man/SumHes.Rd | 41 -
man/Wages.Rd | 57 -
man/dynformula.Rd | 44 -
man/ercomp.Rd | 35
man/fixef.plm.Rd | 21
man/mtest.Rd | 26
man/pFormula.Rd | 45 -
man/pFtest.Rd | 41 -
man/pbgtest.Rd | 55 -
man/pbltest.Rd | 59 -
man/pbsytest.Rd | 68 -
man/pcdtest.Rd | 71 -
man/pdata.frame.Rd | 37 -
man/pdim.Rd | 46 -
man/pdwtest.Rd | 48 -
man/pggls.Rd | 75 --
man/pgmm.Rd | 175 +---
man/pht.Rd | 47 -
man/phtest.Rd | 35
man/plm.Rd | 139 +--
man/plm.data.Rd | 46 -
man/plmtest.Rd | 64 -
man/pmodel.response.Rd | 24
man/pooltest.Rd | 37 -
man/pserie.Rd | 32
man/purtest.Rd |only
man/pvar.Rd | 37 -
man/pvcm.Rd | 42 -
man/pwartest.Rd | 51 -
man/pwfdtest.Rd | 68 -
man/pwtest.Rd | 48 -
man/sargan.Rd | 29
man/vcovBK.Rd |only
man/vcovHC.Rd | 48 -
man/vcovSCC.Rd |only
64 files changed, 2123 insertions(+), 2160 deletions(-)
Title: multinomial logit model
Diff between mlogit versions 0.1-2 dated 2008-12-19 and 0.1-3 dated 2010-01-26
Description: Estimation of the multinomial logit model with choice
specific variables
Author: Yves Croissant
Maintainer: Yves Croissant
mlogit-0.1-2/mlogit/R/methods.mlogit.R |only
mlogit-0.1-2/mlogit/man/logitform.Rd |only
mlogit-0.1-3/mlogit/DESCRIPTION | 15
mlogit-0.1-3/mlogit/NAMESPACE | 16
mlogit-0.1-3/mlogit/R/logitform.R | 166 ++++----
mlogit-0.1-3/mlogit/R/mlogit.R | 604 ++++++++++++++------------------
mlogit-0.1-3/mlogit/R/mlogit.data.R |only
mlogit-0.1-3/mlogit/R/mlogit.lnl.R |only
mlogit-0.1-3/mlogit/R/mlogit.methods.R |only
mlogit-0.1-3/mlogit/R/mlogit.rpar.R |only
mlogit-0.1-3/mlogit/R/mlogit.test.R | 3
mlogit-0.1-3/mlogit/R/mlogit.tools.R |only
mlogit-0.1-3/mlogit/changelog | 9
mlogit-0.1-3/mlogit/data/Cracker.rda |binary
mlogit-0.1-3/mlogit/man/Cracker.Rd | 2
mlogit-0.1-3/mlogit/man/hmftest.Rd | 3
mlogit-0.1-3/mlogit/man/mlogit.Rd | 186 +++++++--
mlogit-0.1-3/mlogit/man/mlogit.data.Rd | 83 ++--
mlogit-0.1-3/mlogit/man/mlogit.optim.Rd |only
19 files changed, 582 insertions(+), 505 deletions(-)
Title: Extensible Time Series
Diff between xts versions 0.6-9 dated 2009-11-03 and 0.7-0 dated 2010-01-26
Description: Provide for uniform handling of R's different time-based
data classes by extending zoo, maximizing native format
information preservation and allowing for user level
customization and extension, while simplifying cross-class
interoperability.
Author: Jeffrey A. Ryan, Josh M. Ulrich
Maintainer: Jeffrey A. Ryan
DESCRIPTION | 8
NAMESPACE | 4
NEWS |only
R/align.time.R | 3
R/barplot.xts.R |only
R/endpoints.R | 63 ++-
R/indexTZ.R | 4
R/lag.xts.R | 7
R/merge.R | 2
R/na.R | 43 ++
R/parse8601.R | 5
R/plot.R | 8
R/print.R | 2
R/rollapply.xts.R | 28 -
R/timeSeries.R | 8
R/xts.R | 4
R/xts.methods.R | 16
WISHLIST | 10
inst/doc/xts.pdf | 849 +++++++++++++++++++++++++-------------------------
man/as.xts.methods.Rd | 1
man/na.locf.xts.Rd |only
man/parseISO8601.Rd | 7
man/subset.xts.Rd | 11
man/xts-package.Rd | 4
src/diff.c | 307 ++++++++++++++++++
src/endpoints.c |only
src/leadingNA.c | 124 +++++--
src/merge.c | 29 +
src/rbind.c | 24 +
src/runSum.c | 2
src/subset.old.c | 4
src/toperiod.c | 156 ++++++---
32 files changed, 1161 insertions(+), 572 deletions(-)
Title: Calculates parameters of the seawater carbonate system
Diff between seacarb versions 2.3 dated 2010-01-07 and 2.3.1 dated 2010-01-26
Description: Calculates parameters of the seawater carbonate system
Author: Heloise Lavigne and Jean-Pierre Gattuso. Portions of code
and/or corrections were contributed by Jean-Marie Epitalon,
Bernard Gentili, Andreas Hofmann, Jim Orr, Aurelien Proye, and
Karline Soetaert
Maintainer: Jean-Pierre Gattuso
ChangeLog | 6 ++++++
DESCRIPTION | 16 ++++++++--------
man/oa.Rd | 2 +-
3 files changed, 15 insertions(+), 9 deletions(-)
Title: Modelling and analysis of real-time PCR data
Diff between qpcR versions 1.2-3 dated 2009-11-06 and 1.2-4 dated 2010-01-26
Description: Model fitting, optimal model selection and calculation of
various features that are essential in the analysis of
quantitative real-time polymerase chain reaction (qPCR).
Author: Andrej-Nikolai Spiess
Maintainer: Andrej-Nikolai Spiess
qpcR-1.2-3/qpcR/R/modlist.R |only
qpcR-1.2-3/qpcR/R/pcrbatch.R |only
qpcR-1.2-3/qpcR/R/plot.pcrfit.R |only
qpcR-1.2-4/qpcR/DESCRIPTION | 10 +++---
qpcR-1.2-4/qpcR/R/calib.r | 26 ++++++++++++----
qpcR-1.2-4/qpcR/R/calib2.r | 2 +
qpcR-1.2-4/qpcR/R/curvemean.R | 39 +++++++++----------------
qpcR-1.2-4/qpcR/R/expfit.R | 2 -
qpcR-1.2-4/qpcR/R/midpoint.R | 4 +-
qpcR-1.2-4/qpcR/R/modlist.r |only
qpcR-1.2-4/qpcR/R/mselect.r | 46 +++++++++++++++++------------
qpcR-1.2-4/qpcR/R/pcrbatch.r |only
qpcR-1.2-4/qpcR/R/pcrfit.r | 32 ++++++++++----------
qpcR-1.2-4/qpcR/R/pcrsim.r | 1
qpcR-1.2-4/qpcR/R/plot.pcrfit.r |only
qpcR-1.2-4/qpcR/R/replist.r | 57 +++++++++++++++++++++++++------------
qpcR-1.2-4/qpcR/man/calib.Rd | 9 +++--
qpcR-1.2-4/qpcR/man/curvemean.Rd | 46 ++++++++++++++++++++---------
qpcR-1.2-4/qpcR/man/fitprob.rd | 2 -
qpcR-1.2-4/qpcR/man/modlist.Rd | 8 +++++
qpcR-1.2-4/qpcR/man/mselect.Rd | 22 +++++++-------
qpcR-1.2-4/qpcR/man/pcrbatch.Rd | 13 +++++---
qpcR-1.2-4/qpcR/man/pcrfit.Rd | 10 +-----
qpcR-1.2-4/qpcR/man/plot.pcrfit.Rd | 48 ++++++++++++++++++++++---------
qpcR-1.2-4/qpcR/man/propagate.Rd | 7 ++--
qpcR-1.2-4/qpcR/man/replist.rd | 16 +++++++---
26 files changed, 245 insertions(+), 155 deletions(-)
Title: Spatially explicit population genetic simulations
Diff between kernelPop versions 0.9.09 dated 2007-10-01 and 0.11.2 dated 2010-01-26
Description: This package creates a individual-based population genetic
simulation. Individuals have spatial coordiantes, dispersal
governed by mixtures of Weibull and normal pdfs. It is
discrete-time. It can be arbitrarily complex given enough
known or assumed demographic characteristics. Simulates
diploid and haploid inheritance. Allows the development of null
distributions of genotypes for complex demographic scenarios.
This version includes some approximations for pollen (male
gamete) dispersal.
Author: Allan Strand and James Niehaus
Maintainer:
kernelPop-0.11.2/kernelPop/CHANGELOG | 4
kernelPop-0.11.2/kernelPop/DESCRIPTION | 16
kernelPop-0.11.2/kernelPop/NAMESPACE | 2
kernelPop-0.11.2/kernelPop/R/landscape.sample.R | 82 ++--
kernelPop-0.11.2/kernelPop/man/landscape.amova.Rd | 2
kernelPop-0.11.2/kernelPop/man/landscape.amova.locus.Rd | 2
kernelPop-0.11.2/kernelPop/man/landscape.amova.pairwise.Rd | 7
kernelPop-0.11.2/kernelPop/man/landscape.demography.Rd | 5
kernelPop-0.11.2/kernelPop/man/landscape.new.epoch.Rd | 70 +++
kernelPop-0.11.2/kernelPop/man/landscape.new.expression.Rd | 23 -
kernelPop-0.11.2/kernelPop/man/landscape.new.floatparam.Rd | 39 ++
kernelPop-0.11.2/kernelPop/man/landscape.sample.Rd | 4
kernelPop-0.11.2/kernelPop/src/FastAllele.cc | 7
kernelPop-0.11.2/kernelPop/src/FastSeqAllele.cc | 7
kernelPop-0.11.2/kernelPop/src/Landscape_space.cc | 246 ++++++++++++-
kernelPop-0.11.2/kernelPop/src/Landscape_space.h | 10
kernelPop-0.11.2/kernelPop/src/Makevars | 2
kernelPop-0.11.2/kernelPop/src/PackedIndividual_space.h | 2
kernelPop-0.11.2/kernelPop/src/RandLib.cc | 6
kernelPop-0.11.2/kernelPop/src/TransMat.cc | 6
kernelPop-0.11.2/kernelPop/src/const.h | 4
kernelPop-0.11.2/kernelPop/src/kernelPop.cc | 18
kernelPop-0.11.2/kernelPop/src/kernelPop.h | 2
kernelPop-0.9.09/kernelPop/README |only
kernelPop-0.9.09/kernelPop/man/landscape.modify.epoch.Rd |only
25 files changed, 462 insertions(+), 104 deletions(-)
Title: Highest density regions and conditional density estimation
Diff between hdrcde versions 2.12 dated 2009-10-13 and 2.13 dated 2010-01-26
Description: Computation of highest density regions in one and two
dimensions, kernel estimation of univariate density functions
conditional on one covariate, and multimodal regression.
Author: Rob J Hyndman
Maintainer: Rob J Hyndman
ChangeLog | 16 +++++++++++-----
DESCRIPTION | 8 ++++----
R/hdr.boxplot.2d.R | 16 ++++++++--------
man/hdr.boxplot.2d.Rd | 4 +++-
4 files changed, 26 insertions(+), 18 deletions(-)
Title: Relevant Functions for Gene Expression Analysis, Especially in
Breast Cancer.
Diff between genefu versions 1.0.0 dated 2010-01-01 and 1.0.1 dated 2010-01-26
Description: R package providing various functions relevant for gene
expression analysis with emphasis on breast cancer.
Author: Benjamin Haibe-Kains, Gianluca Bontempi, Christos Sotiriou
Maintainer: Benjamin Haibe-Kains
DESCRIPTION | 11
R/subtype.cluster.R | 3
data/sbtgene.rda |binary
data/sbtmod1.rda |binary
data/sbtmod2.rda |binary
inst/extdata/sbtmod1_model.csv | 1457 ++++++++++++++++++++---------------------
inst/extdata/sbtmod2_model.csv | 1201 ++++++++++++++++-----------------
man/genefu-package.Rd | 24
8 files changed, 1328 insertions(+), 1368 deletions(-)
Title: Various R programming tools for data manipulation
Diff between gdata versions 2.6.1 dated 2009-08-20 and 2.7.0 dated 2010-01-26
Description: Various R programming tools for data manipulation
Author: Gregory R. Warnes, with contributions from Ben Bolker, Gregor
Gorjanc, Gabor Grothendieck, Ales Korosec, Thomas Lumley, Don
MacQueen, Arni Magnusson, Jim Rogers, and others
Maintainer: Gregory Warnes
gdata-2.6.1/gdata/inst/unitTests/runit.bindData.Rout |only
gdata-2.7.0/gdata/ChangeLog | 1099 +-
gdata-2.7.0/gdata/DESCRIPTION | 14
gdata-2.7.0/gdata/NAMESPACE | 3
gdata-2.7.0/gdata/NEWS | 32
gdata-2.7.0/gdata/R/Args.R | 5
gdata-2.7.0/gdata/R/dQuote.ascii.R |only
gdata-2.7.0/gdata/R/env.R | 1
gdata-2.7.0/gdata/R/is.what.R | 1
gdata-2.7.0/gdata/R/keep.R | 1
gdata-2.7.0/gdata/R/ll.R | 52
gdata-2.7.0/gdata/R/read.xls.R | 136
gdata-2.7.0/gdata/R/sheetCount.R |only
gdata-2.7.0/gdata/R/xls2sep.R |only
gdata-2.7.0/gdata/inst/ChangeLog | 1099 +-
gdata-2.7.0/gdata/inst/NEWS | 32
gdata-2.7.0/gdata/inst/bin/xls2csv.bat | 171
gdata-2.7.0/gdata/inst/doc/mapLevels.pdf |binary
gdata-2.7.0/gdata/inst/doc/unknown.pdf |binary
gdata-2.7.0/gdata/inst/perl/Archive |only
gdata-2.7.0/gdata/inst/perl/IO/AtomicFile.pm | 2
gdata-2.7.0/gdata/inst/perl/IO/InnerFile.pm | 2
gdata-2.7.0/gdata/inst/perl/IO/Lines.pm | 2
gdata-2.7.0/gdata/inst/perl/IO/Scalar.pm | 2
gdata-2.7.0/gdata/inst/perl/IO/ScalarArray.pm | 2
gdata-2.7.0/gdata/inst/perl/IO/Stringy.pm | 2
gdata-2.7.0/gdata/inst/perl/IO/Wrap.pm | 2
gdata-2.7.0/gdata/inst/perl/IO/WrapTie.pm | 2
gdata-2.7.0/gdata/inst/perl/OLE/README-OLE-Storage_Lite |only
gdata-2.7.0/gdata/inst/perl/OLE/Storage_Lite.pm | 229
gdata-2.7.0/gdata/inst/perl/Spreadsheet/ParseExcel.pm | 3749 +++++-----
gdata-2.7.0/gdata/inst/perl/Spreadsheet/ParseExcel/Cell.pm |only
gdata-2.7.0/gdata/inst/perl/Spreadsheet/ParseExcel/Dump.pm | 490 -
gdata-2.7.0/gdata/inst/perl/Spreadsheet/ParseExcel/FmtDefault.pm | 137
gdata-2.7.0/gdata/inst/perl/Spreadsheet/ParseExcel/FmtJapan.pm | 218
gdata-2.7.0/gdata/inst/perl/Spreadsheet/ParseExcel/FmtJapan2.pm | 84
gdata-2.7.0/gdata/inst/perl/Spreadsheet/ParseExcel/FmtUnicode.pm | 83
gdata-2.7.0/gdata/inst/perl/Spreadsheet/ParseExcel/Font.pm |only
gdata-2.7.0/gdata/inst/perl/Spreadsheet/ParseExcel/Format.pm |only
gdata-2.7.0/gdata/inst/perl/Spreadsheet/ParseExcel/SaveParser |only
gdata-2.7.0/gdata/inst/perl/Spreadsheet/ParseExcel/SaveParser.pm | 805 --
gdata-2.7.0/gdata/inst/perl/Spreadsheet/ParseExcel/Utility.pm | 2116 +++--
gdata-2.7.0/gdata/inst/perl/Spreadsheet/ParseExcel/Workbook.pm |only
gdata-2.7.0/gdata/inst/perl/Spreadsheet/ParseExcel/Worksheet.pm |only
gdata-2.7.0/gdata/inst/perl/Spreadsheet/README-ParseExcel |only
gdata-2.7.0/gdata/inst/perl/Spreadsheet/README-XLS |only
gdata-2.7.0/gdata/inst/perl/Spreadsheet/XLSX |only
gdata-2.7.0/gdata/inst/perl/Spreadsheet/XLSX.pm |only
gdata-2.7.0/gdata/inst/perl/VERSIONS |only
gdata-2.7.0/gdata/inst/perl/darwin-2level |only
gdata-2.7.0/gdata/inst/perl/sheetCount.pl |only
gdata-2.7.0/gdata/inst/perl/sheetNames.pl |only
gdata-2.7.0/gdata/inst/perl/xls2csv.pl | 177
gdata-2.7.0/gdata/inst/perl/xls2tab.pl | 179
gdata-2.7.0/gdata/inst/perl/xls2tsv.pl |only
gdata-2.7.0/gdata/inst/xls/ExampleExcelFile.xls |only
gdata-2.7.0/gdata/inst/xls/ExampleExcelFile.xlsx |only
gdata-2.7.0/gdata/man/Args.Rd | 24
gdata-2.7.0/gdata/man/env.Rd | 18
gdata-2.7.0/gdata/man/is.what.Rd | 26
gdata-2.7.0/gdata/man/keep.Rd | 22
gdata-2.7.0/gdata/man/ll.Rd | 53
gdata-2.7.0/gdata/man/read.xls.Rd | 49
gdata-2.7.0/gdata/man/sheetCount.Rd |only
gdata-2.7.0/gdata/src |only
gdata-2.7.0/gdata/tests/test.read.xls.R |only
gdata-2.7.0/gdata/tests/test.read.xls.Rout.save |only
67 files changed, 6265 insertions(+), 4856 deletions(-)
Title: Dendrochronology Program Library in R
Diff between dplR versions 1.2.4 dated 2010-01-14 and 1.2.5 dated 2010-01-26
Description: This package contains functions for performing some
standard tree-ring analyses.
Author: Andy Bunn with contributions from Franco Biondi and Mikko
Korpela
Maintainer: Andy Bunn
DESCRIPTION | 11 +-
NAMESPACE | 2
R/read.rwl.R | 66 ++++++++-------
R/write.rwl.R | 229 +++++++++++++++++++++++++++++++++++++++++++++++++------
man/cms.Rd | 4
man/read.rwl.Rd | 2
man/write.rwl.Rd | 18 ++++
src |only
8 files changed, 270 insertions(+), 62 deletions(-)
Title: US Census 2000 Suite of R Packages
Diff between UScensus2000 versions 0.02 dated 2010-01-21 and 0.03 dated 2010-01-26
Description: US 2000 Census shape files and additional demographic data
from the SF1 100 percent files. This package contains a number
of helper functions for the UScensus2000blk,
UScensus2000blkgrp, UScensus2000tract, UScensus2000cdp
packages.
Author: Zack W. Almquist
Maintainer: Zack W. Almquist
DESCRIPTION | 7 ++-
R/MSA.R | 74 +++++++++++++++++++++++++++++---------
R/check.state.R |only
R/city.R | 62 ++++++++++++++++++--------------
R/county.R | 84 ++++++++++++++++++++++++++------------------
R/demographics.R | 45 ++++++++++++-----------
R/poly.clipper.R | 79 +++++++++++++----------------------------
man/MSA.Rd | 25 ++++++++-----
man/UScensus2000-package.Rd | 17 +++++---
man/check.state.Rd |only
man/city.Rd | 17 +++++---
man/county.Rd | 20 ++++++----
man/demographics.Rd | 13 +++---
man/poly.clipper.Rd | 20 ++++++----
14 files changed, 265 insertions(+), 198 deletions(-)
Title: Selected ISO codes
Diff between ISOcodes versions 0.2-5 dated 2009-08-31 and 0.3-0 dated 2010-01-26
Description: ISO language, territory, currency, script and character
codes. Provides ISO 639 language codes, ISO 3166 territory
codes, ISO 4217 currency codes, ISO 15924 script codes, and the
ISO 8859 character codes as well as the UN M.49 area codes.
Author: Christian Buchta and Kurt Hornik
Maintainer: Kurt Hornik
ISOcodes-0.2-5/ISOcodes/man/Unicode.Rd |only
ISOcodes-0.3-0/ISOcodes/DESCRIPTION | 11 +++++------
ISOcodes-0.3-0/ISOcodes/man/ISO_15924.Rd | 3 ++-
ISOcodes-0.3-0/ISOcodes/man/ISO_639.Rd | 2 +-
ISOcodes-0.3-0/ISOcodes/man/ISO_8859.Rd | 4 ++--
5 files changed, 10 insertions(+), 10 deletions(-)
Title: a Bunch of Structure and Sequence Analysis
Diff between BoSSA versions 1.1 dated 2009-12-22 and 1.2 dated 2010-01-26
Description: Sort sequence from genbank. Retrieve sequence information
from genbank (designed for viruses sequences and retrieve
information such as isolation date and host). BLAST sequence
and accession numbers. Detect group of sequences presenting
phylogeography signal. Read PDB file (protein 3D structure
file).
Author: Pierre Lefeuvre
Maintainer: Pierre Lefeuvre
DESCRIPTION | 15 ++++++++-------
NAMESPACE | 2 ++
R/InfoGB.R | 13 ++++++++++++-
R/InfoGenBank.R | 4 ++--
R/TaxoGB.r |only
R/blast.R |only
R/getGB.R |only
R/outBLAST.R |only
R/sortBLAST.R |only
R/submitBLAST.R |only
man/InfoGenBank.Rd | 6 +++---
man/TaxoGB.Rd |only
man/blast.Rd |only
13 files changed, 27 insertions(+), 13 deletions(-)
Title: Better Automated ReDistricting
Diff between BARD versions 1.08 dated 2010-01-18 and 1.09 dated 2010-01-26
Description: This is a package for automated redistricting and
heuristic exploration of redistricter revealed preference
Author: Micah Altman
Maintainer: Micah Altman
CHANGELOG | 4
DESCRIPTION | 8
NAMESPACE | 2
R/bardComparison.R | 43
R/bardInteractive.R | 50
R/bardOptim.R | 38
R/bardPlan.R | 59
inst/CITATION | 6
inst/doc/Rplots.pdf |783315 +++++++++++++++++++++----------------------
inst/doc/bardJSS-plot1a.eps |29478 -
inst/doc/bardJSS-plot1a.pdf |14806
inst/doc/bardJSS-plot2a.eps |500605 +++++++++++++---------------
inst/doc/bardJSS-plot2a.pdf |526962 ++++++++++++++---------------
inst/doc/bardJSS-plot3a.eps | 702
inst/doc/bardJSS-plot3a.pdf | 947
inst/doc/bardJSS.log | 4
inst/doc/bardJSS.pdf |784882 +++++++++++++++++++++-----------------------
inst/doc/bardJSS.tex | 36
man/BARD.package.Rd | 4
man/choroplotPlan.Rd |only
man/createPlans.Rd | 10
man/fillHolesPlan.Rd | 4
22 files changed, 1317349 insertions(+), 1324616 deletions(-)