More information about symmoments at CRAN
Path: /cran/new | permanent link
Title: Processing and Simulating Genotype Data for Trio Logic
Regression
Diff between trio versions 1.0.2 dated 2010-01-27 and 1.0.3 dated 2010-02-01
More information about trio at CRAN
Description: Set up matched case-pseudo controls genotypes data for
trios in order to run trio logic regreesion, to impute missing
genotypes in trios, or to simulate case-parent trios with
disease risk dependent on SNP-SNP interaction. This package
furthermore contains functions for computing the values of
pairwise LD measures and for identifying LD blocks.
Author: Qing Li, Holger Schwender
Maintainer: Qing Li
DESCRIPTION | 8 ++++----
inst/doc/trio.pdf |binary
man/findLDblocks.Rd | 30 ------------------------------
man/getLD.Rd | 20 --------------------
man/plot.LDblocks.Rd | 30 ------------------------------
man/plot.getLD.Rd | 20 --------------------
man/trio.Rd | 4 ++--
man/trio.check.Rd | 4 ++--
man/trio.sim.Rd | 4 ++--
9 files changed, 10 insertions(+), 110 deletions(-)
Path: /cran/updated | permanent link
Title: Perform SQL Selects on R Data Frames
Diff between sqldf versions 0-2.1 dated 2009-12-28 and 0-3.2 dated 2010-02-01
More information about sqldf at CRAN
Description: Manipulate R data frames using SQL.
Author: G. Grothendieck
Maintainer: G. Grothendieck
DESCRIPTION | 9 +++++----
R/sqldf.R | 19 ++++++++++++-------
inst/NEWS | 4 ++++
inst/THANKS | 2 +-
man/sqldf.Rd | 2 +-
5 files changed, 23 insertions(+), 13 deletions(-)
Path: /cran/updated | permanent link
Title: Model-Based Boosting
Diff between mboost versions 1.1-4 dated 2009-11-18 and 2.0-0 dated 2010-02-01
More information about mboost at CRAN
Description: Functional gradient descent algorithm (boosting) for
optimizing general risk functions utilizing component-wise
(penalised) least squares estimates or regression trees as
base-learners for fitting generalized linear, additive and
interaction models to potentially high-dimensional data.
Author: Torsten Hothorn, Peter Buehlmann, Thomas Kneib, Matthias Schmid
and Benjamin Hofner
Maintainer: Torsten Hothorn
mboost-1.1-4/mboost/R/blackboost.R |only
mboost-1.1-4/mboost/R/gamboost.R |only
mboost-1.1-4/mboost/R/glmboost.R |only
mboost-1.1-4/mboost/R/xsp.R |only
mboost-1.1-4/mboost/benny.txt |only
mboost-1.1-4/mboost/inst/Rplots.pdf |only
mboost-1.1-4/mboost/inst/analysis.R |only
mboost-1.1-4/mboost/inst/birds_Biometrics.Rout |only
mboost-1.1-4/mboost/inst/cache/AIC_sim_lm.R |only
mboost-1.1-4/mboost/inst/cache/AIC_sim_lm_dgp1.Rda |only
mboost-1.1-4/mboost/inst/cache/AIC_sim_lm_dgp2.Rda |only
mboost-1.1-4/mboost/inst/cache/AIC_sim_lm_dgp3.Rda |only
mboost-1.1-4/mboost/inst/cache/AIC_sim_ss.R |only
mboost-1.1-4/mboost/inst/cache/AIC_sim_ss_dgp1.Rda |only
mboost-1.1-4/mboost/inst/cache/AIC_sim_ss_dgp2.Rda |only
mboost-1.1-4/mboost/inst/cache/bodyfat_benchmarks.R |only
mboost-1.1-4/mboost/inst/cache/curve_estimation.R |only
mboost-1.1-4/mboost/inst/cache/tree_sim.R |only
mboost-1.1-4/mboost/inst/cache/tree_sim.Rda |only
mboost-1.1-4/mboost/inst/cache/wpbc_benchmarks.R |only
mboost-1.1-4/mboost/inst/cache/wpbc_survivalbenchmarks.R |only
mboost-1.1-4/mboost/inst/doc/mboost_illustrations.R |only
mboost-1.1-4/mboost/inst/india.Rdata |only
mboost-1.1-4/mboost/inst/india.raw |only
mboost-1.1-4/mboost/man/boost_dpp.Rd |only
mboost-1.1-4/mboost/tests/setup.R |only
mboost-1.1-4/mboost/tests/setup.Rout.save |only
mboost-1.1-4/mboost/to_do_list.txt |only
mboost-2.0-0/mboost/DESCRIPTION | 27
mboost-2.0-0/mboost/NAMESPACE | 123
mboost-2.0-0/mboost/NEWS | 51
mboost-2.0-0/mboost/R/AAA.R |only
mboost-2.0-0/mboost/R/bl.R |only
mboost-2.0-0/mboost/R/bolscw.R |only
mboost-2.0-0/mboost/R/btree.R |only
mboost-2.0-0/mboost/R/control.R | 10
mboost-2.0-0/mboost/R/crossvalidation.R | 122
mboost-2.0-0/mboost/R/family.R | 413 ++
mboost-2.0-0/mboost/R/helpers.R | 521 ---
mboost-2.0-0/mboost/R/inference.R |only
mboost-2.0-0/mboost/R/mboost.R |only
mboost-2.0-0/mboost/R/methods.R | 400 +-
mboost-2.0-0/mboost/R/plot.R |only
mboost-2.0-0/mboost/R/survival.R |only
mboost-2.0-0/mboost/inst/CHANGES | 51
mboost-2.0-0/mboost/inst/CITATION | 8
mboost-2.0-0/mboost/inst/birds_Biometrics.R | 47
mboost-2.0-0/mboost/inst/cache/bodyfat_benchmarks.rda |binary
mboost-2.0-0/mboost/inst/cache/curve_estimation.rda |binary
mboost-2.0-0/mboost/inst/cache/mboost_illustrations_benchmarks.R |only
mboost-2.0-0/mboost/inst/cache/wpbc_benchmarks.rda |binary
mboost-2.0-0/mboost/inst/cache/wpbc_survivalbenchmarks.rda |binary
mboost-2.0-0/mboost/inst/doc/SurvivalEnsembles.Rnw | 11
mboost-2.0-0/mboost/inst/doc/SurvivalEnsembles.pdf |binary
mboost-2.0-0/mboost/inst/doc/boost.bib | 16
mboost-2.0-0/mboost/inst/doc/mboost_illustrations.Rnw | 55
mboost-2.0-0/mboost/inst/doc/mboost_illustrations.pdf |binary
mboost-2.0-0/mboost/inst/india_analysis.R |only
mboost-2.0-0/mboost/man/FP.Rd | 10
mboost-2.0-0/mboost/man/Family.Rd | 296 +
mboost-2.0-0/mboost/man/IPCweights.Rd | 4
mboost-2.0-0/mboost/man/Westbc.Rd | 20
mboost-2.0-0/mboost/man/baselearners.Rd | 439 +-
mboost-2.0-0/mboost/man/birds.Rd | 7
mboost-2.0-0/mboost/man/blackboost.Rd | 80
mboost-2.0-0/mboost/man/bodyfat.Rd | 2
mboost-2.0-0/mboost/man/boost_family-class.Rd | 9
mboost-2.0-0/mboost/man/control.Rd | 23
mboost-2.0-0/mboost/man/cvrisk.Rd | 100
mboost-2.0-0/mboost/man/gamboost.Rd | 108
mboost-2.0-0/mboost/man/glmboost.Rd | 52
mboost-2.0-0/mboost/man/mboost.Rd |only
mboost-2.0-0/mboost/man/mboost_package.Rd |only
mboost-2.0-0/mboost/man/methods.Rd | 232 +
mboost-2.0-0/mboost/man/stabsel.Rd |only
mboost-2.0-0/mboost/man/survFit.Rd | 13
mboost-2.0-0/mboost/man/wpbc.Rd | 2
mboost-2.0-0/mboost/src/mboost.c | 85
mboost-2.0-0/mboost/tests/Examples/mboost-Ex.Rout.save | 1553 +++++-----
mboost-2.0-0/mboost/tests/birds_Biometrics.R |only
mboost-2.0-0/mboost/tests/birds_Biometrics.Rout.save |only
mboost-2.0-0/mboost/tests/bugfixes.R | 153
mboost-2.0-0/mboost/tests/bugfixes.Rout.save | 292 +
mboost-2.0-0/mboost/tests/mboost_illustrations.R | 104
mboost-2.0-0/mboost/tests/mboost_illustrations.Rout.save | 196 -
mboost-2.0-0/mboost/tests/regtest-baselearner.R |only
mboost-2.0-0/mboost/tests/regtest-baselearner.Rout.save |only
mboost-2.0-0/mboost/tests/regtest-blackboost.R | 72
mboost-2.0-0/mboost/tests/regtest-blackboost.Rout.save | 99
mboost-2.0-0/mboost/tests/regtest-family.R |only
mboost-2.0-0/mboost/tests/regtest-family.Rout.save |only
mboost-2.0-0/mboost/tests/regtest-gamboost.R | 150
mboost-2.0-0/mboost/tests/regtest-gamboost.Rout.save | 306 +
mboost-2.0-0/mboost/tests/regtest-glmboost.R | 158 -
mboost-2.0-0/mboost/tests/regtest-glmboost.Rout.save | 280 +
mboost-2.0-0/mboost/tests/regtest-hatmatrix.R | 27
mboost-2.0-0/mboost/tests/regtest-hatmatrix.Rout.save | 51
97 files changed, 4074 insertions(+), 2704 deletions(-)
Path: /cran/updated | permanent link
Title: dynamicGraph
Diff between dynamicGraph versions 0.2.2.5 dated 2009-04-04 and 0.2.2.6 dated 2010-02-01
More information about dynamicGraph at CRAN
Description: Interactive graphical tool for manipulating graphs
Author: Jens Henrik Badsberg
Maintainer: Jens Henrik Badsberg
DESCRIPTION | 8 ++++----
HISTORY | 3 +++
R/zzz.R | 13 ++++++++-----
man/DynamicGraphModel-class.Rd | 2 +-
man/dg.BlockEdge-class.Rd | 3 +--
man/dg.Model-class.Rd | 2 ++
6 files changed, 19 insertions(+), 12 deletions(-)
Path: /cran/updated | permanent link
More information about RH2 at CRAN
Path: /cran/new | permanent link
Title: FISH Based Normalization and Copy Number inference of SNP
microarray data
Diff between FBN versions 1.0 dated 2009-04-16 and 1.3 dated 2010-02-01
More information about FBN at CRAN
Description: Normalizes the data from a file containing the raw values
of the SNP probes of microarrray data by using the FISH probes
and their corresponding CNs.
Author: Adrian Andronache
Maintainer: Adrian Andronache
FBN-1.0/FBN/R/FishBasedNormalization_V4.0.R |only
FBN-1.0/FBN/data/hmcls.txt |only
FBN-1.3/FBN/DESCRIPTION | 8 ++++----
FBN-1.3/FBN/R/FBN.histogramMaxima.R |only
FBN-1.3/FBN/R/FBN.kmeans.R |only
FBN-1.3/FBN/R/FBN.valueCenter.R |only
FBN-1.3/FBN/R/FBNormalization.R |only
FBN-1.3/FBN/R/meanFilter.R |only
FBN-1.3/FBN/R/medianFilter.R |only
FBN-1.3/FBN/data/hmcls.rda |only
FBN-1.3/FBN/man/FBN-package.Rd | 5 +----
FBN-1.3/FBN/man/FBN.histogramMaxima.Rd | 5 +----
FBN-1.3/FBN/man/FBN.kmeans.Rd | 6 +-----
FBN-1.3/FBN/man/FBN.valueCenter.Rd | 3 ---
FBN-1.3/FBN/man/FBNormalization.Rd | 6 ------
FBN-1.3/FBN/man/FISHprobes.rd | 4 ----
FBN-1.3/FBN/man/hmcls.rd | 6 +-----
FBN-1.3/FBN/man/meanFilter.Rd | 4 ----
FBN-1.3/FBN/man/medianFilter.Rd | 4 ----
19 files changed, 8 insertions(+), 43 deletions(-)
Path: /cran/updated | permanent link
More information about GGally at CRAN
Path: /cran/new | permanent link
Title: A Flexible Modelling Environment for Inverse Modelling,
Sensitivity, Identifiability, Monte Carlo Analysis.
Diff between FME versions 1.0 dated 2009-09-18 and 1.1 dated 2010-02-01
More information about FME at CRAN
Description: Provides functions to help in fitting models to data, to
perform Monte Carlo, sensitivity and identifiability analysis.
It is intended to work with models be written as a set of
differential equations that are solved either by an integration
routine from package deSolve, or a steady-state solver from
package rootSolve. However, the methods can also be used with
other types of functions.
Author: Karline Soetaert
Maintainer: Karline Soetaert
FME-1.0/FME/inst/examples |only
FME-1.1/FME/DESCRIPTION | 12
FME-1.1/FME/R/Grid.R | 4
FME-1.1/FME/R/Norm.R | 8
FME-1.1/FME/R/collin.R | 125
FME-1.1/FME/R/modCRL.R | 84
FME-1.1/FME/R/modCost.R | 18
FME-1.1/FME/R/modFit.R | 168
FME-1.1/FME/R/modMCMC.R | 502
FME-1.1/FME/R/pseudoOptim.R | 22
FME-1.1/FME/R/sensFun.R | 87
FME-1.1/FME/R/sensRange.R | 258
FME-1.1/FME/R/ultilities.R | 57
FME-1.1/FME/inst/CITATION |only
FME-1.1/FME/inst/doc/FME.Rnw |only
FME-1.1/FME/inst/doc/FME.pdf |only
FME-1.1/FME/inst/doc/FMEdyna.Rnw | 15
FME-1.1/FME/inst/doc/FMEdyna.pdf |39939 ++---
FME-1.1/FME/inst/doc/FMEmcmc.Rnw | 4
FME-1.1/FME/inst/doc/FMEmcmc.pdf |261311 ++++++++++++++++++-------------------
FME-1.1/FME/inst/doc/FMEother.Rnw | 25
FME-1.1/FME/inst/doc/FMEother.pdf |101486 +++++++-------
FME-1.1/FME/inst/doc/FMEsteady.Rnw | 14
FME-1.1/FME/inst/doc/FMEsteady.pdf |62371 ++++----
FME-1.1/FME/inst/doc/examples |only
FME-1.1/FME/inst/doc/mcmc.Rdata |only
FME-1.1/FME/inst/doc/vignettes.bib | 590
FME-1.1/FME/man/FME.Rd | 107
FME-1.1/FME/man/Grid.Rd | 14
FME-1.1/FME/man/Latinhyper.Rd | 21
FME-1.1/FME/man/Norm.Rd | 10
FME-1.1/FME/man/collin.Rd | 110
FME-1.1/FME/man/modCRL.Rd | 160
FME-1.1/FME/man/modCost.Rd | 180
FME-1.1/FME/man/modFit.Rd | 157
FME-1.1/FME/man/modMCMC.Rd | 521
FME-1.1/FME/man/pseudoOptim.Rd | 38
FME-1.1/FME/man/sensFun.Rd | 198
FME-1.1/FME/man/sensRange.Rd | 309
39 files changed, 235234 insertions(+), 233691 deletions(-)
Path: /cran/updated | permanent link