CRANberries

CRANberries aggregates information about new and and updated packages from the
CRAN network for R available as this html version and a corresponding RSS feed.
Created and provided by Dirk Eddelbuettel.

Fri, 05 Feb 2010

Package traitr updated to version 0.5 with previous version 0.4 dated 2010-02-03

Title: An interface for creating GUIs modeled in part after traits UI module for python.
Description: An interface for creating GUIs modeled in part after the traits UI module for python. The basic design takes advantage of the model-view-controller design pattern. The interface makes basic dialogs quite easy to produce.
Author: John Verzani
Maintainer: John Verzani

Diff between traitr versions 0.4 dated 2010-02-03 and 0.5 dated 2010-02-05

 ChangeLog           |    5 +++++
 DESCRIPTION         |    6 +++---
 NEWS                |    8 ++++++++
 R/items.R           |   13 +++++++++----
 inst/doc/traitr.pdf |binary
 man/choiceItem.Rd   |    4 ++--
 6 files changed, 27 insertions(+), 9 deletions(-)

More information about traitr at CRAN
Path: /cran/updated | permanent link

Package race updated to version 0.1.58 with previous version 0.1.56 dated 2005-04-01

Title: Racing methods for the selection of the best
Description: Implementation of some racing methods for the empirical selection of the best. If the R package `rpvm' is installed (and if PVM is available, properly configured, and initialized), the evaluation of the candidates are performed in parallel on different hosts.
Author: Mauro Birattari
Maintainer: Mauro Birattari

Diff between race versions 0.1.56 dated 2005-04-01 and 0.1.58 dated 2010-02-05

 race-0.1.56/race/INDEX                           |only
 race-0.1.56/race/TODO                            |only
 race-0.1.56/race/debian                          |only
 race-0.1.58/race/DESCRIPTION                     |   19 +++++++++++--------
 race-0.1.58/race/R/race.R                        |    8 ++++----
 race-0.1.58/race/inst/examples/example-wrapper.R |    2 --
 race-0.1.58/race/inst/slave/srace.sh             |    2 --
 race-0.1.58/race/man/race.Rd                     |    2 --
 race-0.1.58/race/man/race.describe.Rd            |   18 ++++++------------
 race-0.1.58/race/man/race.info.Rd                |   16 +++++-----------
 race-0.1.58/race/man/race.init.Rd                |   20 +++++++-------------
 race-0.1.58/race/man/race.wrapper.Rd             |   15 +++++----------
 12 files changed, 38 insertions(+), 64 deletions(-)

More information about race at CRAN
Path: /cran/updated | permanent link

Package diveMove updated to version 0.9.7 with previous version 0.9.6 dated 2009-10-21

Title: Dive analysis and calibration
Description: Utilities to represent, visualize, filter, analyse, and summarize time-depth recorder (TDR) data. Miscellaneous functions for handling location data are also provided.
Author: Sebastian P. Luque
Maintainer: Sebastian P. Luque

Diff between diveMove versions 0.9.6 dated 2009-10-21 and 0.9.7 dated 2010-02-05

 ChangeLog                     |   45 
 DESCRIPTION                   |   15 
 NAMESPACE                     |    2 
 R/AllClass.R                  |    2 
 R/AllGenerics.R               |    2 
 R/AllMethod.R                 |    2 
 R/austFilter.R                |    2 
 R/bouts.R                     |    2 
 R/calibrate.R                 |    2 
 R/detDive.R                   |    2 
 R/detPhase.R                  |    2 
 R/distSpeed.R                 |    2 
 R/diveStats.R                 |    2 
 R/oneDiveStats.R              |    2 
 R/plotTD.R                    |    2 
 R/readLocs.R                  |    2 
 R/readTDR.R                   |   12 
 R/speedStats.R                |    2 
 R/stampDive.R                 |    2 
 R/zoc.R                       |    2 
 R/zzz.R                       |    2 
 README                        |    9 
 data/dives.csv                |68400 +++++++++++++++++++++---------------------
 data/sealLocs.csv             |  740 
 inst/doc/Makefile             |    2 
 inst/doc/diveMove.Rnw         |   14 
 inst/doc/diveMove.pdf         | 6279 ++-
 man/TDR-accessors.Rd          |    2 
 man/TDR-class.Rd              |    2 
 man/TDRcalibrate-accessors.Rd |    2 
 man/TDRcalibrate-class.Rd     |    2 
 man/austFilter.Rd             |    4 
 man/bout-methods.Rd           |    2 
 man/bout-misc.Rd              |    2 
 man/bouts2MLE.Rd              |    2 
 man/bouts2NLS.Rd              |    2 
 man/calibrateDepth.Rd         |    2 
 man/calibrateSpeed.Rd         |    2 
 man/detDive-internal.Rd       |    2 
 man/detPhase-internal.Rd      |    2 
 man/distSpeed.Rd              |    4 
 man/diveMove-internal.Rd      |    2 
 man/diveMove-package.Rd       |    5 
 man/diveStats.Rd              |    2 
 man/dives.Rd                  |   14 
 man/extractDive-methods.Rd    |    2 
 man/labDive-internal.Rd       |    2 
 man/plotTDR-methods.Rd        |    2 
 man/readLocs.Rd               |    8 
 man/readTDR.Rd                |   14 
 man/rqPlot.Rd                 |    2 
 man/sealLocs.Rd               |    9 
 man/timeBudget-methods.Rd     |    2 
 man/zoc.Rd                    |    2 
 tests/calibrations.R          |    9 
 tests/class-tests.R           |   13 
 tests/final-stats.R           |   12 
 57 files changed, 38070 insertions(+), 37614 deletions(-)

More information about diveMove at CRAN
Path: /cran/updated | permanent link

Package bmd updated to version 0.2 with previous version 0.1 dated 2008-06-05

Title: Benchmark dose analysis for dose-response data
Description: Benchmark dose analysis for continuous and quantal dose-response data.
Author: Christian Ritz
Maintainer: Christian Ritz

Diff between bmd versions 0.1 dated 2008-06-05 and 0.2 dated 2010-02-05

 DESCRIPTION   |   29 ++++++++++++++++-------------
 inst/CITATION |    7 ++++---
 2 files changed, 20 insertions(+), 16 deletions(-)

More information about bmd at CRAN
Path: /cran/updated | permanent link

Package Ryacas updated to version 0.2-10 with previous version 0.2-9 dated 2009-03-03

Title: R interface to the yacas computer algebra system
Description: An interface to the yacas computer algebra system.
Author: Rob Goedman , Gabor Grothendieck , Søren Højsgaard , Ayal Pinkus
Maintainer: G. Grothendieck

Diff between Ryacas versions 0.2-9 dated 2009-03-03 and 0.2-10 dated 2010-02-05

 DESCRIPTION         |   30 
 INSTALL             |only
 R/Num.R             |only
 R/OpenMath2R.R      |    3 
 R/yacas.R           |    7 
 inst/NEWS           |    8 
 inst/doc/Ryacas.pdf | 2613 ++++++++++++++++++++++++++++------------------------
 7 files changed, 1446 insertions(+), 1215 deletions(-)

More information about Ryacas at CRAN
Path: /cran/updated | permanent link

New package RFinanceYJ with initial version 0.0.7
Package: RFinanceYJ
Type: Package
Title: RFinanceYJ
Version: 0.0.7
Date: 2010-01-21
Author: Yohei Sato, Nobuaki Oshiro
Maintainer: Yohei Sato
Description: Japanese stock market from Yahoo!-finance-Japan
License: BSD
LazyLoad: yes
Depends: XML
Packaged: 2010-02-05 13:46:57 UTC; yokkuns
Repository: CRAN
Date/Publication: 2010-02-05 17:18:12

More information about RFinanceYJ at CRAN
Path: /cran/new | permanent link

Package Matrix updated to version 0.999375-37 with previous version 0.999375-36 dated 2010-02-04

Title: Sparse and Dense Matrix Classes and Methods
Description: Classes and methods for dense and sparse matrices and operations on them using Lapack and SuiteSparse.
Author: Douglas Bates and Martin Maechler
Maintainer: Doug and Martin

Diff between Matrix versions 0.999375-36 dated 2010-02-04 and 0.999375-37 dated 2010-02-05

 ChangeLog                  |   12 
 DESCRIPTION                |    8 
 R/Csparse.R                |   44 +--
 TODO                       |    2 
 inst/doc/Comparisons.pdf   |binary
 inst/doc/Design-issues.pdf |binary
 inst/doc/Intro2Matrix.pdf  |  587 ++++++++++++++++++++++-----------------------
 inst/doc/Introduction.pdf  |binary
 inst/doc/sparseModels.pdf  |binary
 inst/test-tools.R          |   28 +-
 src/Csparse.c              |   22 +
 tests/indexing.R           |   29 +-
 tests/indexing.Rout.save   |  429 ++++++++++++++++++--------------
 13 files changed, 629 insertions(+), 532 deletions(-)

More information about Matrix at CRAN
Path: /cran/updated | permanent link

Package spgwr updated to version 0.6-4 with previous version 0.6-2 dated 2009-06-26

Title: Geographically weighted regression
Description: Functions for computing geographically weighted regressions based on work by Chris Brunsdon, Martin Charlton and Stewart Fortheringham, http://ncg.nuim.ie/ncg/GWR/index.htm
Author: Roger Bivand and Danlin Yu, contributions by Tomoki Nakaya, tricube function based on a contribution by Miquel-Angel Garcia-Lopez
Maintainer: Roger Bivand

Diff between spgwr versions 0.6-2 dated 2009-06-26 and 0.6-4 dated 2010-02-05

 ChangeLog          |   13 +++++++++++--
 DESCRIPTION        |   14 ++++++++------
 INDEX              |    1 +
 R/gwr.R            |   12 ++++++------
 R/tricube.R        |only
 inst/ChangeLog     |   22 ++++++++++++++++++++--
 man/gwr.tricube.Rd |only
 7 files changed, 46 insertions(+), 16 deletions(-)

More information about spgwr at CRAN
Path: /cran/updated | permanent link

Package spdep updated to version 0.4-58 with previous version 0.4-56 dated 2009-12-18

Title: Spatial dependence: weighting schemes, statistics and models
Description: A collection of functions to create spatial weights matrix objects from polygon contiguities, from point patterns by distance and tesselations, for summarising these objects, and for permitting their use in spatial data analysis, including regional aggregation by minimum spanning tree; a collection of tests for spatial autocorrelation, including global Moran's I, APLE, Geary's C, Hubert/Mantel general cross product statistic, Empirical Bayes estimates and Assunção/Reis Index, Getis/Ord G and multicoloured join count statistics, local Moran's I and Getis/Ord G, saddlepoint approximations and exact tests for global and local Moran's I; and functions for estimating spatial simultaneous autoregressive (SAR) lag and error models, impact measures for lag models, weighted and unweighted SAR and CAR spatial regression models, semi-parametric and Moran eigenvector spatial filtering, GM SAR error models, and generalized spatial two stage least squares models.
Author: Roger Bivand , with contributions by Luc Anselin, Renato Assunção, Olaf Berke, Andrew Bernat, Eric Blankmeyer, Marilia Carvalho, Yongwan Chun, Bjarke Christensen, Carsten Dormann, Stéphane Dray, Rein Halbersma, Elias Krainski, Nicholas Lewin-Koh, Hongfei Li, Jielai Ma, Giovanni Millo, Werner Mueller, Hisaji Ono, Pedro Peres-Neto, Gianfranco Piras, Markus Reder, Michael Tiefelsdorf, and Danlin Yu.
Maintainer: Roger Bivand

Diff between spdep versions 0.4-56 dated 2009-12-18 and 0.4-58 dated 2010-02-05

 ChangeLog           |   15 
 DESCRIPTION         |   20 -
 INDEX               |    5 
 NAMESPACE           |   15 
 R/globalG.R         |    3 
 R/mess.R            |only
 R/summary.spsarlm.R |    4 
 inst/ChangeLog      |   15 
 inst/doc/CO69.pdf   |binary
 inst/doc/sids.pdf   |  964 +++++++++++++++++++++++++---------------------------
 man/globalG.test.Rd |    6 
 man/lagmess.Rd      |only
 man/skater.Rd       |    2 
 man/ssw.Rd          |    2 
 14 files changed, 542 insertions(+), 509 deletions(-)

More information about spdep at CRAN
Path: /cran/updated | permanent link

New package rpsychi with initial version 0.0
Package: rpsychi
Title: Statistics for psychiatric research
Version: 0.0
Date: 2010-02-14
Author: Yasuyuki Okumura
Maintainer: Yasuyuki Okumura
Depends: doBy, gtools
Description: The rpsychi offers a number of functions for psychiatry, psychiatric nursing, clinical psychology. Functions are primarily for statistical significance testing using published work. For example, you can conduct a factorial analysis of variance (ANOVA), which requires only the mean, standard deviation, and sample size for each cell, rather than the individual data. This package covers fundamental statistical tests such as t-test, chi-square test, analysis of variance, and multiple regression analysis. With some exceptions, you can obtain effect size and its confidence interval. These functions help you to obtain effect size from published work, and then to conduct a priori power analysis or meta-analysis, even if a researcher do not report effect size in a published work.
License: GPL (>= 2)
URL: http://blue.zero.jp/yokumura/
LazyLoad: yes
Encoding: UTF-8
Packaged: 2010-02-05 10:20:41 UTC; Any
Repository: CRAN
Date/Publication: 2010-02-05 11:52:52

More information about rpsychi at CRAN
Path: /cran/new | permanent link

Package qAnalyst updated to version 0.6.2 with previous version 0.6.1 dated 2010-01-27

Title: Control Charts, Capability and Distribution Identification
Description: qAnalyst performs: control charts for variables and attributes according to Douglas C. Montgomery Introduction to Statistical Quality Control book, Capability analysis for normal and non - normal distributions and Distributions Identification
Author: Andrea Spano'
Maintainer: Andrea Spano'

Diff between qAnalyst versions 0.6.1 dated 2010-01-27 and 0.6.2 dated 2010-02-05

 DESCRIPTION                |    8 -
 R/plot.spc.R               |    4 
 R/spc.R                    |    9 -
 R/testFun.R                |  335 +++++++++++++++++++++++----------------------
 README                     |    5 
 man/brakeCap.Rd            |    3 
 man/capabilityNormal.Rd    |    6 
 man/capabilityNotNormal.Rd |    6 
 man/probplot.Rd            |    6 
 man/qAnalyst-package.Rd    |   33 ++--
 man/spc.Rd                 |   65 ++++----
 man/summary.capability.Rd  |    5 
 man/testFun.Rd             |   36 ++--
 man/toys.Rd                |    3 
 man/tubes.Rd               |    3 
 15 files changed, 287 insertions(+), 240 deletions(-)

More information about qAnalyst at CRAN
Path: /cran/updated | permanent link

New package dae with initial version 1.0-1
Package: dae
Version: 1.0-1
Date: 2010-02-05
Title: Functions useful in the design and ANOVA of experiments
Author: Chris Brien .
Maintainer: Chris Brien
Depends: R (>= 2.10.0), lattice, methods
Description: This package includes a number of functions that aid in generating experimental designs and in examining their canonical efficiency factors. It also includes functions that facilitate diagnostic checking after an aov, especially when the Error function has been used in the call to aov.
License: GPL (>= 2)
Lazyload: yes
URL: http://chris.brien.name
Packaged: 2010-02-05 10:40:46 UTC; briencj
Repository: CRAN
Date/Publication: 2010-02-05 11:52:39

More information about dae at CRAN
Path: /cran/new | permanent link

Package pARccs updated to version 0.2-2 with previous version 0.2-1 dated 2009-11-26

Title: Estimation of attributable and partial attributable risks (AR and PAR) and visualization of attributable risks from case-control data
Description: Functions to estimate (partial) attributable risks from case-control data with corresponding percentile or BCa confidence intervals; Visualization of attributable riks
Author: Christiane Raemsch
Maintainer: Christiane Raemsch

Diff between pARccs versions 0.2-1 dated 2009-11-26 and 0.2-2 dated 2010-02-05

 DESCRIPTION |    6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

More information about pARccs at CRAN
Path: /cran/updated | permanent link

Package mra updated to version 2.4 with previous version 2.3 dated 2010-02-03

Title: Analysis of Mark-Recapture data
Description: Analysis of mark-recapture data using covariates. Models implemented: CJS open population; Huggin's closed population.
Author: Trent McDonald
Maintainer: Trent McDonald

Diff between mra versions 2.3 dated 2010-02-03 and 2.4 dated 2010-02-05

 DESCRIPTION        |    8 ++++----
 R/F.cjs.estim.R    |    3 ++-
 man/F.fit.table.Rd |   19 +++++++++----------
 src/Mrawin.f90     |    2 +-
 4 files changed, 16 insertions(+), 16 deletions(-)

More information about mra at CRAN
Path: /cran/updated | permanent link

Package filehash updated to version 2.1 with previous version 2.0-2 dated 2010-01-27

Title: Simple key-value database
Description: Simple key-value database
Author: Roger D. Peng
Maintainer: Roger D. Peng

Diff between filehash versions 2.0-2 dated 2010-01-27 and 2.1 dated 2010-02-05

 DESCRIPTION           |    8 ++++----
 R/filehash-DB1.R      |    6 ------
 R/filehash-RDS.R      |    8 ++++++++
 R/filehash.R          |   15 ++++++++++-----
 inst/doc/filehash.pdf |binary
 man/filehash-class.Rd |    4 ++--
 6 files changed, 24 insertions(+), 17 deletions(-)

More information about filehash at CRAN
Path: /cran/updated | permanent link

Package fda updated to version 2.2.1 with previous version 2.2.0 dated 2009-11-12

Title: Functional Data Analysis
Description: These functions were developed to support functional data analysis as described in Ramsay, J. O. and Silverman, B. W. (2005) Functional Data Analysis. New York: Springer. They were ported from earlier versions in Matlab and S-PLUS. An introduction appears in Ramsay, J. O., Hooker, Giles, and Graves, Spencer (2009) Functional Data Analysis with R and Matlab (Springer). The package includes data sets and script files working many examples including all but one of the 76 figures in this latter book.
Author: J. O. Ramsay , Hadley Wickham , Spencer Graves , Giles Hooker
Maintainer: J. O. Ramsay

Diff between fda versions 2.2.0 dated 2009-11-12 and 2.2.1 dated 2010-02-05

 DESCRIPTION          |   10 ++--
 R/fRegress.R         |   81 ++++++++++++++++++++++++++++++++++++---
 R/fRegressArgCheck.R |    9 +---
 R/fd.R               |  105 +++++++++++++++++++++++++++------------------------
 R/inprod.R           |    8 +--
 5 files changed, 144 insertions(+), 69 deletions(-)

More information about fda at CRAN
Path: /cran/updated | permanent link

Package bayesmix updated to version 0.7-0 with previous version 0.6-1 dated 2009-06-14

Title: Bayesian Mixture Models with JAGS
Description: Bayesian mixture models of univariate Gaussian distributions using JAGS
Author: Bettina Gruen
Maintainer: Bettina Gruen

Diff between bayesmix versions 0.6-1 dated 2009-06-14 and 0.7-0 dated 2010-02-05

 bayesmix-0.6-1/bayesmix/R/AAA.R                   |only
 bayesmix-0.6-1/bayesmix/R/JAGScontrol.R           |only
 bayesmix-0.6-1/bayesmix/R/haveJags.R              |only
 bayesmix-0.6-1/bayesmix/man/JAGSread.Rd           |only
 bayesmix-0.6-1/bayesmix/man/JAGSsetup.Rd          |only
 bayesmix-0.6-1/bayesmix/man/haveJAGS.Rd           |only
 bayesmix-0.7-0/bayesmix/DESCRIPTION               |   15 +--
 bayesmix-0.7-0/bayesmix/NAMESPACE                 |    5 -
 bayesmix-0.7-0/bayesmix/NEWS                      |    5 +
 bayesmix-0.7-0/bayesmix/R/BMMmodel.R              |    4 
 bayesmix-0.7-0/bayesmix/R/BMMpriors.R             |    2 
 bayesmix-0.7-0/bayesmix/R/Inits.R                 |   11 --
 bayesmix-0.7-0/bayesmix/R/JAGScall.R              |   72 ++++++-----------
 bayesmix-0.7-0/bayesmix/R/JAGSrun.R               |   89 ++++++++--------------
 bayesmix-0.7-0/bayesmix/R/Sort.R                  |   15 +--
 bayesmix-0.7-0/bayesmix/R/plots.R                 |   30 +++----
 bayesmix-0.7-0/bayesmix/R/randomPermutation.R     |    4 
 bayesmix-0.7-0/bayesmix/man/BMMmodel.Rd           |   21 ++---
 bayesmix-0.7-0/bayesmix/man/BMMposteriori.Rd      |    3 
 bayesmix-0.7-0/bayesmix/man/BMMpriors.Rd          |    4 
 bayesmix-0.7-0/bayesmix/man/JAGScall.Rd           |   20 ++--
 bayesmix-0.7-0/bayesmix/man/JAGScontrol.Rd        |   38 +++------
 bayesmix-0.7-0/bayesmix/man/JAGSrun.Rd            |   37 +++------
 bayesmix-0.7-0/bayesmix/man/darwin.Rd             |    6 -
 bayesmix-0.7-0/bayesmix/man/fish.Rd               |    2 
 bayesmix-0.7-0/bayesmix/man/inits.Rd              |    4 
 bayesmix-0.7-0/bayesmix/man/plot.BMMposteriori.Rd |    2 
 bayesmix-0.7-0/bayesmix/man/plot.jags.Rd          |    5 -
 28 files changed, 166 insertions(+), 228 deletions(-)

More information about bayesmix at CRAN
Path: /cran/updated | permanent link

Package FunctSNP updated to version 1.0-2 with previous version 1.0-1 dated 2010-01-19

Title: FunctSNP - SNP annotation data methods and species specific database builder
Description: This package provides functions to query species-specific annotation databases. The main use of the package is to associate SNPs to functional information. Functions are also provided to download or build local databases from public repositories.
Author: S. J. Goodswen with contributions from N. S. Watson-Haigh, H. N. Kadarmideen and C. Gondro
Maintainer: S. J. Goodswen

Diff between FunctSNP versions 1.0-1 dated 2010-01-19 and 1.0-2 dated 2010-02-05

 FunctSNP-1.0-1/FunctSNP/BinaryFiles                                 |only
 FunctSNP-1.0-1/FunctSNP/inst/dbAutoMaker/Programs/linux_sqlite3.exe |only
 FunctSNP-1.0-1/FunctSNP/inst/dbAutoMaker/Programs/sqlite3.exe       |only
 FunctSNP-1.0-1/FunctSNP/inst/dbAutoMaker/Programs/win_sqlite3.exe   |only
 FunctSNP-1.0-2/FunctSNP/DESCRIPTION                                 |   10 +++++-----
 FunctSNP-1.0-2/FunctSNP/inst/dbAutoMaker/Admin/startup.pl           |   10 +++++-----
 FunctSNP-1.0-2/FunctSNP/src                                         |only
 7 files changed, 10 insertions(+), 10 deletions(-)

More information about FunctSNP at CRAN
Path: /cran/updated | permanent link

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