Title: Robust Covariance Matrix Estimators
Diff between sandwich versions 2.2-5 dated 2010-01-15 and 2.2-6 dated 2010-03-02
More information about sandwich at CRAN
Description: Model-robust standard error estimators for
cross-sectional, time series and longitudinal data.
Author: Thomas Lumley, Achim Zeileis
Maintainer: Achim Zeileis
DESCRIPTION | 8 ++++----
NEWS | 5 +++++
R/estfun.R | 2 +-
inst/doc/sandwich-OOP.pdf |binary
inst/doc/sandwich.pdf |binary
5 files changed, 10 insertions(+), 5 deletions(-)
Path: /cran/updated | permanent link
Title: Synthesizing List of Differentially Expressed Features
Diff between sdef versions 1.3 dated 2009-11-22 and 1.4 dated 2010-03-02
More information about sdef at CRAN
Description: The package performs two tests to evaluate if the
experiments are associated and returns a list of interesting
features common to all the experiments.
Author: Alberto Cassese, Marta Blangiardo
Maintainer: Alberto Cassese
DESCRIPTION | 8 +--
R/Tmc.R | 30 ++++++++++--
R/baymod.R | 104 +++++++++++++++++++++++++++++++++++--------
R/createTable.R | 103 ++++++++++++++++++++++---------------------
R/extractFeatures.R.R | 82 +++++++++++++++++-----------------
R/extractFeatures.T.R | 2
R/ratio.R | 112 +++++++++++++++++++++--------------------------
data/Example3Lists.rda |only
man/Example3Lists.Rd |only
man/Liver.Muscle.Rd | 18 +++----
man/Tmc.Rd | 14 ++---
man/baymod.Rd | 15 +++---
man/createTable.Rd | 22 ++++-----
man/extractFeatures.R.Rd | 22 ++++-----
man/extractFeatures.T.Rd | 14 ++---
man/ratio.Rd | 20 ++++----
man/sdef-package.Rd | 6 +-
man/simulation.Rd | 2
man/simulation.indep.Rd | 2
19 files changed, 327 insertions(+), 249 deletions(-)
Path: /cran/updated | permanent link
Title: Create and manipulate data frames that contain country names or
country coding schemes
Diff between countrycode versions 0.3 dated 2009-12-13 and 0.4 dated 2010-03-02
More information about countrycode at CRAN
Description: Standardizes country names, converts them into one of
seven coding schemes, assigns region descriptors, and generates
empty dyadic or country-year dataframes from the coding
schemes.
Author: Vincent Arel-Bundock
Maintainer: Vincent Arel-Bundock
DESCRIPTION | 8 +++----
R/countrycode.R | 52 ++++++++++++++++++++++++++--------------------
data/countrycode_data.rda |binary
3 files changed, 34 insertions(+), 26 deletions(-)
Path: /cran/updated | permanent link
Title: Signal processing
Diff between signal versions 0.5 dated 2006-12-10 and 0.6-1 dated 2010-03-02
More information about signal at CRAN
Description: A set of generally Matlab/Octave-compatible signal
processing functions. Includes filter generation utilities,
filtering functions, resampling routines, and visualization of
filter models. It also includes interpolation functions and
some Matlab comparability functions.
Author: Tom Short
Maintainer: Uwe Ligges
DESCRIPTION | 31 +++++-----
NAMESPACE-neu |only
R/bartlett.R | 14 ++--
R/bilinear.R | 18 ++----
R/blackman.R | 12 +---
R/boxcar.R | 7 --
R/butter.R | 28 ++++-----
R/buttord.R | 39 +++++--------
R/cheb1ord.R | 39 ++++++-------
R/chebwin.R | 47 +++++++---------
R/cheby1.R | 32 +++++-----
R/cheby2.R | 38 ++++++-------
R/chirp.R | 40 +++++++------
R/decimate.R | 12 ++--
R/ellip.R | 143 +++++++++++++++++++++++--------------------------
R/ellipke.R | 54 +++++++++---------
R/ellipord.R | 83 +++++++++++++---------------
inst/LICENSE | 72 +++++++++++-------------
man/Ma.Rd | 5 -
man/bilinear.Rd | 10 +--
man/butter.Rd | 2
man/buttord.Rd | 8 +-
man/cheb1ord.Rd | 8 +-
man/chebwin.Rd | 16 ++---
man/cheby1.Rd | 12 ++--
man/chirp.Rd | 7 +-
man/decimate.Rd | 8 +-
man/ellip.Rd | 8 +-
man/ellipord.Rd | 12 +---
man/fftfilt.Rd | 8 +-
man/filter.Rd | 10 +--
man/filtfilt.Rd | 19 +++---
man/fir1.Rd | 10 +--
man/fir2.Rd | 10 +--
man/freqs.Rd | 6 +-
man/freqz.Rd | 10 +--
man/grpdelay.Rd | 6 +-
man/impz.Rd | 4 -
man/interp.Rd | 8 +-
man/interp1.Rd | 23 ++++---
man/kaiserord.Rd | 75 +++++++++++++++----------
man/medfilt1.Rd | 4 -
man/pchip.Rd | 10 ++-
man/poly.Rd | 4 -
man/polyval.Rd | 2
man/remez.Rd | 8 +-
man/resample.Rd | 12 ++--
man/sftrans.Rd | 6 +-
man/sgolayfilt.Rd | 6 +-
man/signal-internal.Rd | 1
man/signal.package.Rd | 34 ++++-------
man/specgram.Rd | 20 +++---
man/unwrap.Rd | 2
man/windowing.Rd | 4 -
54 files changed, 540 insertions(+), 567 deletions(-)
Path: /cran/updated | permanent link
Title: L1 (lasso) and L2 (ridge) penalized estimation in GLMs and in
the Cox model
Diff between penalized versions 0.9-29 dated 2010-02-11 and 0.9-30 dated 2010-03-02
More information about penalized at CRAN
Description: A package for fitting possibly high dimensional penalized
regression models. The penalty structure can be any combination
of an L1 penalty (lasso), an L2 penalty (ridge) and a
positivity constraint on the regression coefficients. The
supported regression models are linear, logistic and poisson
regression and the Cox Proportional Hazards model.
Cross-validation routines allow optimization of the tuning
parameters.
Author: Jelle Goeman
Maintainer: Jelle Goeman
DESCRIPTION | 8 ++++----
R/checkinput.R | 4 ++--
R/penalized.R | 2 +-
changelog.txt | 9 ++++++++-
inst/CITATION | 10 +++++-----
inst/doc/Rplots.pdf | 4 ++--
inst/doc/penalized.Rnw | 2 +-
inst/doc/penalized.bib | 9 +++++----
inst/doc/penalized.pdf |binary
9 files changed, 28 insertions(+), 20 deletions(-)
Path: /cran/updated | permanent link
Title: Normal (1-d) Mixture Models (S3 Classes and Methods)
Diff between nor1mix versions 1.1-1 dated 2009-11-26 and 1.1-2 dated 2010-03-02
More information about nor1mix at CRAN
Description: Onedimensional Normal Mixture Models Classes, for, e.g.,
density estimation or clustering algorithms research and
teaching; providing the widely used Marron-Wand densities, see
?MarronWand.
Author: Martin Mächler
Maintainer: Martin Maechler
ChangeLog | 21 ++++++++++++
DESCRIPTION | 8 ++--
R/norMix.R | 93 ++++++++++++++++++++++++++-------------------------------
R/safeUroot.R |only
man/pnorMix.Rd | 16 +++++++--
tests/ex.R | 7 ++++
6 files changed, 87 insertions(+), 58 deletions(-)
Path: /cran/updated | permanent link
Title: Implementation of the Natural and Orthogonal InterAction (NOIA)
model
Diff between noia versions 0.93 dated 2009-02-16 and 0.94 dated 2010-03-02
More information about noia at CRAN
Description: The NOIA model, as described extensively in Alvarez-Castro
& Carlborg (2007), is a framework facilitating the estimation
of genetic effects and genotype-to-phenotype maps. This package
provides the basic tools to perform linear and multilinear
regressions from real populations (provided the phenotype and
the genotype of every individuals), estimating the genetic
effects from different reference points, the genotypic values,
and the decomposition of genetic variances in a multi-locus, 2
alleles system. This package is presented in Le Rouzic &
Alvarez-Castro (2008).
Author: Arnaud Le Rouzic, Arne B. Gjuvsland (2007-2010)
Maintainer: Arnaud Le Rouzic
noia-0.93/noia/R/matrix2list.R |only
noia-0.93/noia/R/strrev.R |only
noia-0.93/noia/man/matrix2list.Rd |only
noia-0.93/noia/man/strrev.Rd |only
noia-0.94/noia/DESCRIPTION | 36 +++++++++++++++----
noia-0.94/noia/R/GPmap.R | 2 -
noia-0.94/noia/R/Sloc.R | 2 -
noia-0.94/noia/R/Z2freq.R | 2 -
noia-0.94/noia/R/bilinearStep.R | 2 -
noia-0.94/noia/R/checkgenZ.R | 2 -
noia-0.94/noia/R/drawGenotype.R | 49 +++++++++++++++++++++++++--
noia-0.94/noia/R/effNames.R | 2 -
noia-0.94/noia/R/effectsNamesGeneral.R | 6 ++-
noia-0.94/noia/R/effectsNamesMultilinear.R | 2 -
noia-0.94/noia/R/effectsPvalues.R | 2 -
noia-0.94/noia/R/effectsSelect.R | 2 -
noia-0.94/noia/R/effectsVariances.R | 15 ++++++--
noia-0.94/noia/R/formulaMultilinear.R | 2 -
noia-0.94/noia/R/freqmat2Sgenofreq.R |only
noia-0.94/noia/R/freqmat2Sgenofreqloc.R |only
noia-0.94/noia/R/gen2Z.R | 2 -
noia-0.94/noia/R/gen2genZ.R | 2 -
noia-0.94/noia/R/genNames.R | 2 -
noia-0.94/noia/R/genNamesAppend.R | 2 -
noia-0.94/noia/R/genZ2S.R | 6 ++-
noia-0.94/noia/R/genZ2X.R | 2 -
noia-0.94/noia/R/genZ2Z.R | 2 -
noia-0.94/noia/R/genZ2ZS.R | 6 ++-
noia-0.94/noia/R/genZ2freq.R | 2 -
noia-0.94/noia/R/geneticEffects.R | 2 -
noia-0.94/noia/R/linearGPmapanalysis.R |only
noia-0.94/noia/R/linearRegression.R | 12 +++++-
noia-0.94/noia/R/multilinearRegression.R | 13 ++++++-
noia-0.94/noia/R/partialX.R | 2 -
noia-0.94/noia/R/prepareRegression.R | 2 -
noia-0.94/noia/R/preparelinearGPmap.R |only
noia-0.94/noia/R/print.noia.common.R | 10 +++--
noia-0.94/noia/R/print.noia.linear.R | 2 -
noia-0.94/noia/R/print.noia.linear.gpmap.R |only
noia-0.94/noia/R/print.noia.multilinear.R | 2 -
noia-0.94/noia/R/print.noia.vardec.R | 12 ++++--
noia-0.94/noia/R/reconstructLinearEffects.R | 2 -
noia-0.94/noia/R/simulatePop.R | 6 +--
noia-0.94/noia/R/startingValues.R | 2 -
noia-0.94/noia/R/startingValuesLinear.R | 2 -
noia-0.94/noia/R/startingValuesMultilinear.R | 2 -
noia-0.94/noia/R/startingValuesNothing.R | 2 -
noia-0.94/noia/R/startingValuesReg.R | 2 -
noia-0.94/noia/R/statusMaxDom.R | 2 -
noia-0.94/noia/R/statusMaxLevel.R | 2 -
noia-0.94/noia/R/varianceDecomposition.R | 12 ++++--
noia-0.94/noia/man/A_noia-package.Rd | 29 +++++++++++----
noia-0.94/noia/man/B_geneticRegression.Rd | 2 -
noia-0.94/noia/man/C_GPmapanalysis.Rd |only
noia-0.94/noia/man/noiaMatrix.Rd | 22 ++++++++++--
noia-0.94/noia/man/printNoia.Rd | 12 +++---
noia-0.94/noia/man/simulatePop.Rd | 44 ++++++++++++++++++++----
noia-0.94/noia/man/varianceDecomposition.Rd | 3 +
58 files changed, 266 insertions(+), 89 deletions(-)
Path: /cran/updated | permanent link
Title: Kernel Regression Smoothing with Local or Global Plug-in
Bandwidth
Diff between lokern versions 1.0-8 dated 2009-07-02 and 1.0-9 dated 2010-03-02
More information about lokern at CRAN
Description: Kernel regression smoothing with adaptive local or global
plug-in bandwidth selection.
Author: Eva Herrmann
Maintainer: Martin Maechler
ChangeLog | 7 +++++++
DESCRIPTION | 8 ++++----
R/glkerns.R | 3 ++-
demo/glk-derivs.R | 8 ++++++--
man/glkerns.Rd | 3 ++-
src/lokerns.f | 3 +--
tests/glk1.Rout.save | 16 ++++++++++------
7 files changed, 32 insertions(+), 16 deletions(-)
Path: /cran/updated | permanent link
Title: An implementation of the Grammar of Graphics
Diff between ggplot2 versions 0.8.6 dated 2010-02-18 and 0.8.7 dated 2010-03-02
More information about ggplot2 at CRAN
Description: An implementation of the grammar of graphics in R. It
combines the advantages of both base and lattice graphics:
conditioning and shared axes are handled automatically, and you
can still build up a plot step by step from multiple data
sources. It also implements a sophisticated multidimensional
conditioning system and a consistent interface to map data to
aesthetic attributes. See the ggplot2 website for more
information, documentation and examples.
Author: Hadley Wickham
Maintainer: Hadley Wickham
ggplot2-0.8.6/ggplot2/Rprofmem.out |only
ggplot2-0.8.7/ggplot2/CHANGELOG | 31 +++++++++++++++++++
ggplot2-0.8.7/ggplot2/DESCRIPTION | 6 +--
ggplot2-0.8.7/ggplot2/NEWS | 39 ++++++------------------
ggplot2-0.8.7/ggplot2/R/aaa-html.r | 3 +
ggplot2-0.8.7/ggplot2/R/coord-map.r | 15 ++++++---
ggplot2-0.8.7/ggplot2/R/geom-point-.r | 5 +++
ggplot2-0.8.7/ggplot2/R/labels.r | 12 +++++++
ggplot2-0.8.7/ggplot2/R/plot-construction.r | 4 +-
ggplot2-0.8.7/ggplot2/R/plot.r | 4 +-
ggplot2-0.8.7/ggplot2/R/scale-discrete-.r | 2 -
ggplot2-0.8.7/ggplot2/R/scale-discrete-colour.r | 11 ++++--
ggplot2-0.8.7/ggplot2/R/scales-.r | 6 ---
ggplot2-0.8.7/ggplot2/R/stat-bin.r | 15 ++++++++-
ggplot2-0.8.7/ggplot2/R/stat-bin2d.r | 2 -
ggplot2-0.8.7/ggplot2/R/stat-density-2d.r | 2 -
ggplot2-0.8.7/ggplot2/R/trans-scales.r | 4 +-
ggplot2-0.8.7/ggplot2/R/utilities-colour.r | 10 ++++++
ggplot2-0.8.7/ggplot2/man/coord_cartesian.rd | 4 +-
ggplot2-0.8.7/ggplot2/man/coord_flip.rd | 4 +-
ggplot2-0.8.7/ggplot2/man/coord_map.rd | 4 +-
ggplot2-0.8.7/ggplot2/man/make-labels-m9.rd |only
ggplot2-0.8.7/ggplot2/man/missing-colour-cz.rd |only
ggplot2-0.8.7/ggplot2/man/scale_brewer.rd | 5 +--
ggplot2-0.8.7/ggplot2/templates/index.html | 6 +++
25 files changed, 132 insertions(+), 62 deletions(-)
Path: /cran/updated | permanent link
Title: A package for graphical modelling in R
Diff between gRbase versions 1.3.3 dated 2010-02-18 and 1.3.4 dated 2010-03-02
More information about gRbase at CRAN
Description: The gRbase package provides certain general constructs
which are used by other graphical modelling packages. This
includes 1) the concept of gmData (graphical meta data), 2)
several graph algorithms 3) facilities for table operations, 4)
functions for testing for conditional independence. gRbase also
illustrates how hierarchical log-linear models (hllm) may be
implemented.
Author: Søren Højsgaard
Maintainer: Søren Højsgaard
ChangeLog | 6 ++++++
DESCRIPTION | 6 +++---
INDEX | 1 +
R/GraphAlgo-edgeList.R |only
R/GraphAlgo-querygraph.R | 14 --------------
R/utilities.R | 13 +------------
R/zzz.R | 13 ++++---------
inst/doc/gRbase.pdf |binary
man/GraphAlgo-edgeList.Rd |only
man/GraphAlgo-operations1.Rd | 13 ++++++-------
10 files changed, 21 insertions(+), 45 deletions(-)
Path: /cran/updated | permanent link
Title: BioPhysConnectoR
Diff between BioPhysConnectoR versions 1.6 dated 2010-02-16 and 1.6-1 dated 2010-03-02
More information about BioPhysConnectoR at CRAN
Description: Utilities and functions to investigate the relation
between biomolecular structures, their interactions, and the
evolutionary information revealed in sequence alignments of
these molecules.
Author: Franziska Hoffgaard
Maintainer: Franziska Hoffgaard
DESCRIPTION | 6 +++---
R/build.interact.r | 6 ++++--
man/BioPhysConnectoR-package.Rd | 2 +-
3 files changed, 8 insertions(+), 6 deletions(-)
Path: /cran/updated | permanent link
More information about apcluster at CRAN
Path: /cran/new | permanent link
Title: AquaEnv - an integrated development toolbox for aquatic chemical
model generation
Diff between AquaEnv versions 0.8-2 dated 2010-01-29 and 1.0 dated 2010-03-02
More information about AquaEnv at CRAN
Description: AquaEnv is an integrated development toolbox for aquatic
chemical model generation focused on (ocean) acidification and
CO2 air-water exchange. It contains all elements necessary to
model the pH, the related CO2 air-water exchange, as well as
aquatic acid-base chemistry in general for an arbitrary marine,
estuarine or freshwater system. Also chemical batches can be
modelled. Next to the routines necessary to calculate desired
information, AquaEnv also contains a suite of tools to
visualize this information. Furthermore, AquaEnv can not only
be used to build dynamic models of aquatic systems, but it can
also serve as a simple desktop tool for the experimental
aquatic chemist to generate and visualize all possible derived
information from a set of measurements with one single easy to
use R function. Additionally, the sensitivity of the system to
variations in the input variables can be visualized.
Author: Andreas F. Hofmann, Karline Soetaert, Filip J.R. Meysman
Maintainer: Andreas F. Hofmann
AquaEnv-0.8-2/AquaEnv/inst/doc/Rplots.ps |only
AquaEnv-1.0/AquaEnv/DESCRIPTION | 8
AquaEnv-1.0/AquaEnv/R/aquaenv_public_mainfunctions.R | 2
AquaEnv-1.0/AquaEnv/inst/CITATION | 6
AquaEnv-1.0/AquaEnv/inst/doc/AquaEnv-ConstantsAndFormulae.pdf | 2112 +++++-----
AquaEnv-1.0/AquaEnv/inst/doc/AquaEnv-PrivateFunctions.pdf |binary
AquaEnv-1.0/AquaEnv/inst/doc/AquaEnv.tex | 6
7 files changed, 1076 insertions(+), 1058 deletions(-)
Path: /cran/updated | permanent link
Title: Graphic Extensions for Categorical Data
Diff between extracat versions 1.0-0 dated 2010-01-19 and 1.0-1 dated 2010-03-02
More information about extracat at CRAN
Description: graphic extensions for categorical data
Author: Alexander Pilhoefer
Maintainer: Alexander Pilhoefer
DESCRIPTION | 17 +++++++++--------
R/cpcp2.R | 50 ++++++++++++++++++++++++++++++++++----------------
R/irmb1.R | 15 ++++++++++-----
R/listen.R | 7 +++++--
R/newrmb2.R | 12 +++++++++---
R/resort2.R | 2 +-
R/untableSet.R | 2 +-
man/cpcp.Rd | 15 +++++++++------
man/extracat.Rd | 8 ++++----
man/irmb.Rd | 14 ++++++++++----
man/listen.Rd | 13 ++++++++-----
man/resort.Rd | 7 +++++--
man/rmb.Rd | 21 ++++++++++++---------
man/spread.Rd | 2 +-
man/subtable.Rd | 5 +++--
man/untableSet.Rd | 2 +-
16 files changed, 122 insertions(+), 70 deletions(-)
Path: /cran/updated | permanent link
Title: Processing and Simulating Genotype Data for Trio Logic
Regression
Diff between trio versions 1.0.11 dated 2010-02-26 and 1.0.12 dated 2010-03-02
More information about trio at CRAN
Description: Set up matched case-pseudo controls genotypes data for
trios in order to run trio logic regreesion, to impute missing
genotypes in trios, or to simulate case-parent trios with
disease risk dependent on SNP-SNP interaction. This package
furthermore contains functions for computing the values of
pairwise LD measures and for identifying LD blocks.
Author: Qing Li, Holger Schwender
Maintainer: Qing Li
DESCRIPTION | 8
R/ped2gen.R | 1
R/tdt.R | 42 +
inst/doc/trio.pdf | 1206 ++++++++++++++++++++++++++----------------------------
man/tdt2way.Rd | 17
5 files changed, 649 insertions(+), 625 deletions(-)
Path: /cran/updated | permanent link
More information about VizCompX at CRAN
Path: /cran/new | permanent link