Wed, 02 Jun 2010

Package qvcalc updated to version 0.8-7 with previous version 0.8-6 dated 2010-05-16

Title: Quasi variances for factor effects in statistical models
Description: Functions to compute quasi variances and associated measures of approximation error
Author: David Firth
Maintainer: David Firth

Diff between qvcalc versions 0.8-6 dated 2010-05-16 and 0.8-7 dated 2010-06-02

 DESCRIPTION |    8 ++++----
 R/qvcalc.R  |    5 ++++-
 2 files changed, 8 insertions(+), 5 deletions(-)

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Package mstate updated to version 0.2.4 with previous version 0.2.3 dated 2009-11-06

Title: Data preparation, estimation and prediction in multi-state models
Description: Functions for data preparation, descriptives, hazard estimation and prediction with Aalen-Johansen or simulation in competing risks and multi-state models
Author: Hein Putter, Liesbeth de Wreede, Marta Fiocco
Maintainer: Hein Putter

Diff between mstate versions 0.2.3 dated 2009-11-06 and 0.2.4 dated 2010-06-02

 Changelog.txt         |   20 ++++++++-
 DESCRIPTION           |   10 ++--
 R/expandcovs.R        |    1 
 R/msboot.R            |    9 ++--
 R/msfit.R             |    7 ++-
 R/plot.probtrans.R    |   25 +++++++----
 R/probtrans.R         |    2 
 R/redrank.R           |   68 ++++++++++++++++++++----------
 R/summary.probtrans.R |    4 -
 data/ebmt4.RData      |binary
 inst/doc/Rplots.pdf   |  110 +++++++++++++++++++++++++-------------------------
 inst/doc/Tutorial.Rnw |    8 +--
 inst/doc/Tutorial.pdf |binary
 man/ebmt4.Rd          |   17 +++----
 man/msboot.Rd         |   15 ++----
 man/mstate-package.Rd |    4 -
 man/plot.probtrans.Rd |    6 +-
 man/probtrans.Rd      |   16 ++++---
 man/redrank.Rd        |   42 +++++++------------
 19 files changed, 207 insertions(+), 157 deletions(-)

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New package dynaTree with initial version 1.0
Package: dynaTree
Title: Dynamic trees for learning and design
Version: 1.0
Date: 2010-06-02
Author: Robert B. Gramacy and Matt A. Taddy
Depends: R (>= 2.4)
Suggests: akima, tgp, plgp, MASS
Description: Inference by sequential Monte Carlo for dynamic tree regression and classification models by particle learning (PL), with hooks provided for sequential design and optimization. Illustrative examples from the seminal dynamic trees paper are facilitated by demos in the package; see demo(package="dynaTree")
Maintainer: Robert B. Gramacy
License: LGPL
URL: http://www.statslab.cam.ac.uk/~bobby/dynaTree.html
Packaged: 2010-06-02 09:45:33 UTC; bobby
Repository: CRAN
Date/Publication: 2010-06-02 10:25:37

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Package inline updated to version 0.3.5 with previous version 0.3.4 dated 2009-12-28

Title: Inline C, C++, Fortran function calls from R
Description: Functionality to dynamically define R functions and S4 methods with in-lined C, C++ or Fortran code supporting .C and .Call calling conventions.
Author: Oleg Sklyar, Duncan Murdoch, Mike Smith, Dirk Eddelbuettel, Romain Francois
Maintainer: Oleg Sklyar

Diff between inline versions 0.3.4 dated 2009-12-28 and 0.3.5 dated 2010-06-02

 DESCRIPTION             |   15 ++++++++-------
 NAMESPACE               |    5 +++--
 NEWS                    |only
 R/cfunction.R           |    4 +++-
 R/cxxfunction.R         |only
 R/getDynLib.R           |only
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 man/cxxfunction.Rd      |only
 man/getDynLib.Rd        |only
 man/inline-package.Rd   |only
 man/package.skeleton.Rd |only
 man/plugins.Rd          |only
 13 files changed, 14 insertions(+), 11 deletions(-)

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Package fitdistrplus updated to version 0.1-3 with previous version 0.1-2 dated 2009-12-29

Title: Help to fit of a parametric distribution to non-censored or censored data
Description: Extends the fitdistr function (of the MASS package) with several functions to help the fit of a parametric distribution to non-censored or censored data. Censored data may contain left censored, right censored and interval censored values, with several lower and upper bounds.
Author: Marie Laure Delignette-Muller , Regis Pouillot , Jean-Baptiste Denis and Christophe Dutang
Maintainer: Marie Laure Delignette-Muller

Diff between fitdistrplus versions 0.1-2 dated 2009-12-29 and 0.1-3 dated 2010-06-02

 DESCRIPTION                     |   12 +-
 NAMESPACE                       |    2 
 R/descdist.R                    |   83 +++++++++++++----
 R/fitdist.R                     |  189 ++--------------------------------------
 R/gofstat.R                     |only
 R/plotdist.R                    |   31 +++---
 data                            |only
 inst/CITATION                   |    6 -
 inst/NEWS                       |   28 +++++
 inst/doc/intro2fitdistrplus.Rnw |  106 +++++++++++-----------
 inst/doc/intro2fitdistrplus.pdf |binary
 man/bootdist.Rd                 |    2 
 man/descdist.Rd                 |   52 +++++++----
 man/fitdist.Rd                  |   88 +-----------------
 man/gofstat.Rd                  |only
 man/groundbeef.Rd               |only
 man/plotdist.Rd                 |   16 ++-
 17 files changed, 241 insertions(+), 374 deletions(-)

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New package survPresmooth with initial version 1.0
Package: survPresmooth
Type: Package
Title: Presmoothed Estimation in Survival Analysis
Version: 1.0
Date: 2010-06-01
Author: Ignacio Lopez-de-Ullibarri and Maria Amalia Jacome
Maintainer: Ignacio Lopez-de-Ullibarri
Depends: R(>= 2.11.1)
Description: Compute presmoothed versions of estimators of survival, density, cumulative and non-cumulative hazard functions with right-censored survival data
License: GPL-2
LazyLoad: yes
Packaged: 2010-06-01 21:20:20 UTC; ilu
Repository: CRAN
Date/Publication: 2010-06-02 08:01:27

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Package RSAGA updated to version 0.9-7 with previous version 0.9-6 dated 2010-01-14

Title: SAGA Geoprocessing and Terrain Analysis in R
Description: RSAGA provides access to geocomputing and terrain analysis functions of SAGA from within R by running the command line version of SAGA. In addition, several R functions for handling and manipulating ASCII grids are provided, including a flexible framework for applying local functions (including predict methods of fitted models) or focal functions to multiple grids. SAGA is available under GPL via http://sourceforge.net/projects/saga-gis/.
Author: Alexander Brenning
Maintainer: Alexander Brenning

Diff between RSAGA versions 0.9-6 dated 2010-01-14 and 0.9-7 dated 2010-06-02

 DESCRIPTION          |    8 ++++----
 R/RSAGA-modules.R    |    2 +-
 R/gridtools.R        |   19 ++++++++++++-------
 man/RSAGA-package.Rd |    4 ++--
 4 files changed, 19 insertions(+), 14 deletions(-)

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Package HWEBayes updated to version 1.3 with previous version 1.2 dated 2009-07-30

Title: Bayesian investigation of Hardy-Weinberg Equilibrium via estimation and testing.
Description: Estimation and testing of HWE using Bayesian methods. Three models are currently considered: HWE, a model parameterized in terms of the allele frequencies and a single inbreeding coefficient f, and the saturated model. Testing is based on Bayes factors.
Author: Jon Wakefield
Maintainer: Jon Wakefield

Diff between HWEBayes versions 1.2 dated 2009-07-30 and 1.3 dated 2010-06-02

 DESCRIPTION                 |    6 +++---
 inst/doc/HWEBayes-Guide.pdf |binary
 man/DiabRecess.Rd           |    7 +------
 man/DirichNormHWE.Rd        |    5 -----
 man/DirichNormSat.Rd        |    4 ----
 man/DirichSampHWE.Rd        |    3 ---
 man/DirichSampSat.Rd        |    4 ----
 man/HWEDirichBF2.Rd         |    7 -------
 man/HWEImportSamp.Rd        |    7 -------
 man/HWETriangBF2.Rd         |    7 -------
 man/HWEmodelsMLE.Rd         |   10 ----------
 man/HWEsimdat.Rd            |   11 -----------
 man/LambdaOptim.Rd          |    7 -------
 man/LambdaPriorChoice.Rd    |   10 ----------
 man/MultLogLik.Rd           |    5 -----
 man/SinglefPrior.Rd         |    7 -------
 man/SinglefReject.Rd        |   10 ----------
 man/TriangNormHWE.Rd        |    7 -------
 man/baselogit.Rd            |    3 ---
 man/invbaselogit.Rd         |    4 ----
 20 files changed, 4 insertions(+), 120 deletions(-)

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Package GGally updated to version 0.2 with previous version 0.1 dated 2010-02-01

Title: Extension to ggplot2.
Description: Package contains templates for different plots to be combined into a plot matrix.
Author: Barret Schloerke , Di Cook , Heike Hofmann , and Hadley Wickham
Maintainer: Barret Schloerke

Diff between GGally versions 0.1 dated 2010-02-01 and 0.2 dated 2010-06-02

 DESCRIPTION    |    8 -
 R/find-combo.r |   15 +-
 R/gg-plots.r   |   18 +++
 R/ggpairs.r    |  304 ++++++++++++++++++++++++++++++++++++++++++++++-----------
 man/ggpairs.Rd |   59 +++++++++--
 5 files changed, 328 insertions(+), 76 deletions(-)

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Package DoE.wrapper updated to version 0.7-2 with previous version 0.7-1 dated 2010-04-03

Title: Wrapper package for design of experiments functionality
Description: This package creates various kinds of designs for (industrial) experiments. It uses, and sometimes enhances, design generation routines from other packages. Initially, response surface designs from package rsm and latin hypercube samples from package lhs have been implemented.
Author: Ulrike Groemping
Maintainer: Ulrike Groemping

Diff between DoE.wrapper versions 0.7-1 dated 2010-04-03 and 0.7-2 dated 2010-06-02

 DESCRIPTION      |    8 ++++----
 R/Dopt.augment.R |    4 ++--
 inst/NEWS        |    6 ++++++
 3 files changed, 12 insertions(+), 6 deletions(-)

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