Wed, 30 Jun 2010

New package seqRFLP with initial version 1.0.0
Package: seqRFLP
Type: Package
Title: Simulation and visualization of restriction enzyme cutting pattern from DNA sequences.
Version: 1.0.0
Date: 2010-06-29
Author: Qiong Ding, Jinlong Zhang
Maintainer: Qiong Ding
Description: This package includes functions for handling DNA sequences, especially simulated RFLP and TRFLP pattern based on selected restriction enzyme and DNA sequences.
License: GPL-2
LazyLoad: yes
Packaged: 2010-06-30 13:08:41 UTC; new
Repository: CRAN
Date/Publication: 2010-06-30 13:30:11

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Package playwith updated to version 0.9-51 with previous version 0.9-50 dated 2010-06-22

Title: A GUI for interactive plots using GTK+
Description: A GTK+ graphical user interface for editing and interacting with R plots.
Author: Felix Andrews
Maintainer: Felix Andrews

Diff between playwith versions 0.9-50 dated 2010-06-22 and 0.9-51 dated 2010-06-30

 DESCRIPTION           |    8 ++++----
 R/apiIdentify.R       |   10 ++++++++--
 R/uiClickActions.R    |   10 +++++-----
 R/uiOptionsActions.R  |   10 ++++++----
 inst/NEWS             |   11 +++++++++++
 man/playSelectData.Rd |    3 +++
 6 files changed, 37 insertions(+), 15 deletions(-)

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Package latticist updated to version 0.9-43 with previous version 0.9-42 dated 2008-11-14

Title: A graphical user interface for exploratory visualisation
Description: Latticist provides a graphical user interface for exploratory visualisation. It is primarily an interface to the Lattice graphics system, but also produces displays from the vcd package for categorical data. Given a multivariate dataset (either a data frame or a table), latticist attempts to produce useful displays based on the properties of the data. The displays can be customised by editing the calls used to generate them.
Author: Felix Andrews
Maintainer: Felix Andrews

Diff between latticist versions 0.9-42 dated 2008-11-14 and 0.9-43 dated 2010-06-30

 latticist-0.9-42/latticist/inst/doc/Sweave.sty              |only
 latticist-0.9-43/latticist/DESCRIPTION                      |   43 
 latticist-0.9-43/latticist/NAMESPACE                        |    3 
 latticist-0.9-43/latticist/R/custom.theme.black.R           |   11 
 latticist-0.9-43/latticist/R/latticeStyleGUI.R              |    5 
 latticist-0.9-43/latticist/R/latticistCompose.R             |   73 
 latticist-0.9-43/latticist/R/latticist_gWidgets.R           |    5 
 latticist-0.9-43/latticist/R/latticist_playwith.R           |   22 
 latticist-0.9-43/latticist/R/options.R                      |    2 
 latticist-0.9-43/latticist/inst/CITATION                    |only
 latticist-0.9-43/latticist/inst/NEWS                        |   17 
 latticist-0.9-43/latticist/inst/doc/common.R                |   57 
 latticist-0.9-43/latticist/inst/doc/latticistAids2.Rnw      |    8 
 latticist-0.9-43/latticist/inst/doc/latticistAids2.pdf      |binary
 latticist-0.9-43/latticist/inst/doc/latticistCO2.Rnw        |    4 
 latticist-0.9-43/latticist/inst/doc/latticistCO2.pdf        |binary
 latticist-0.9-43/latticist/inst/doc/latticistEmployment.Rnw |   54 
 latticist-0.9-43/latticist/inst/doc/latticistEmployment.pdf |binary
 latticist-0.9-43/latticist/inst/doc/latticistFrogs.Rnw      |    8 
 latticist-0.9-43/latticist/inst/doc/latticistFrogs.pdf      |37754 ++++++------
 latticist-0.9-43/latticist/man/custom.theme.black.Rd        |   12 
 latticist-0.9-43/latticist/man/latticist.Rd                 |   32 
 22 files changed, 20062 insertions(+), 18048 deletions(-)

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New package hotspots with initial version 1.0
Package: hotspots
Type: Package
Title: Hot spots
Version: 1.0
Date: 2010-06-14
Author: Anthony Darrouzet-Nardi
Maintainer: Anthony Darrouzet-Nardi
Description: Calculates a hot spot cutoff and associated analyses for statistical populations
Depends: lattice, robustbase
License: GPL-2
LazyLoad: yes
Packaged: 2010-06-29 18:47:28 UTC; anthony
Repository: CRAN
Date/Publication: 2010-06-30 11:57:58

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Package gss updated to version 1.1-4 with previous version 1.1-3 dated 2010-06-14

Title: General Smoothing Splines
Description: A comprehensive package for structural multivariate function estimation using smoothing splines.
Author: Chong Gu
Maintainer: Chong Gu

Diff between gss versions 1.1-3 dated 2010-06-14 and 1.1-4 dated 2010-06-30

 ChangeLog                |   13 +
 DESCRIPTION              |    8 -
 R/family.proj.R          |   22 +--
 R/hzdrate.sshzd.R        |   12 +
 R/project.ssanova.R      |   31 +++-
 R/project.sshzd.R        |   21 ++-
 R/project.sshzd1.R       |    2 
 R/ssden.R                |    2 
 R/sshzd.R                |  319 +++++++++++++++++++++++++++++++++++------------
 R/sshzd1.R               |  296 ++++++++++++++++++++++++++++++++++---------
 man/drkpk.Rd             |   10 -
 man/sshzd.Rd             |   17 +-
 src/hzdnewton10.f        |   65 +++++----
 src/ratfor/hzdnewton10.r |    5 
 src/ratfor/llrmnewton.r  |    7 -
 15 files changed, 610 insertions(+), 220 deletions(-)

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Package geoRglm updated to version 0.8-28 with previous version 0.8-27 dated 2010-05-16

Title: geoRglm - a package for generalised linear spatial models
Description: Functions for inference in generalised linear spatial models. The posterior and predictive inference is based on Markov chain Monte Carlo methods. Package geoRglm is an extension to the package geoR, which must be installed first.
Author: Ole F. Christensen and Paulo J. Ribeiro Jr
Maintainer: Ole Christensen

Diff between geoRglm versions 0.8-27 dated 2010-05-16 and 0.8-28 dated 2010-06-30

 DESCRIPTION               |    8 ++--
 R/mcmc.R                  |   74 ++++++++++++++++++++++++++--------------------
 inst/doc/geoRglmintro.pdf |binary
 man/glsm.krige.Rd         |    2 -
 man/likfit.glsm.Rd        |    2 -
 man/proflik.glsm.Rd       |    2 -
 6 files changed, 49 insertions(+), 39 deletions(-)

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Package Rsolnp updated to version 1.0-4 with previous version 1.0-2 dated 2010-03-13

Title: General Non-linear Optimization
Description: General Non-linear Optimization Using Augmented Lagrange Multiplier Method
Author: Alexios Ghalanos and Stefan Theussl
Maintainer: Alexios Ghalanos

Diff between Rsolnp versions 1.0-2 dated 2010-03-13 and 1.0-4 dated 2010-06-30

 ChangeLog             |   16 ++++++++++++++++
 DESCRIPTION           |   10 +++++-----
 R/benchmarks.R        |    3 +--
 R/subnp.R             |    6 ++++--
 man/Rsolnp-package.Rd |    4 ++--
 man/benchmark.Rd      |    2 ++
 man/gosolnp.Rd        |    4 +++-
 man/solnp.Rd          |   10 ++++++----
 8 files changed, 39 insertions(+), 16 deletions(-)

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Package Rhh updated to version 1.0.1 with previous version 1.0 dated 2009-11-09

Title: Calculating multilocus heterozygosity and heterozygosity-heterozygosity correlation
Description: This package includes functions to estimate heterozygosity-heterozygosity correlation and to calculate three estimates of individual multilocus heterozygosity: homozygosity by loci, internal relatedness, and standardized heterozygosity.
Author: Jussi Alho, Kaisa Välimäki
Maintainer: Jussi Alho

Diff between Rhh versions 1.0 dated 2009-11-09 and 1.0.1 dated 2010-06-30

 Rhh-1.0.1/Rhh/DESCRIPTION                   |    8 ++++----
 Rhh-1.0.1/Rhh/inst/doc/Rhh_manual_1.0.1.pdf |only
 Rhh-1.0/Rhh/inst/doc/Rhh_manual_1.0.pdf     |only
 3 files changed, 4 insertions(+), 4 deletions(-)

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New package RWebMA with initial version 0.0.2
Package: RWebMA
Type: Package
Title: RWebMA
Version: 0.0.2
Date: 2010-06-29
Author: Yohei Sato
Maintainer: Yohei Sato
Description: This package is an interface for R of WebMA of Yahoo! Japan. http://developer.yahoo.co.jp/webapi/jlp/ma/v1/parse.html
License: BSD
LazyLoad: yes
Depends: XML
Packaged: 2010-06-29 20:10:14 UTC; yokkuns
Repository: CRAN
Date/Publication: 2010-06-30 11:57:26

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