Title: Robust Estimation for Compositional Data.
Diff between robCompositions versions 1.4.1 dated 2010-06-21 and 1.4.2 dated 2010-07-05
More information about robCompositions at CRAN
Description: The package includes methods for imputation of
compositional data including robust methods, (robust) outlier
detection for compositional data, (robust) principal component
analysis for compositional data, (robust) factor analysis for
compositional data, (robust) discriminant analysis for
compositional data (Fisher rule) and (robust) Anderson-Darling
normality tests for compositional data as well as popular
log-ratio transformations (alr, clr, ilr, and their inverse
transformations).
Author: Matthias Templ, Karel Hron, Peter Filzmoser
Maintainer: Matthias Templ
DESCRIPTION | 8 ++++----
R/outCoDa.R | 6 +++---
R/plot.outCoDa.R | 3 ++-
inst/doc/imputation.pdf |binary
man/outCoDa.Rd | 13 +++++++++----
5 files changed, 18 insertions(+), 12 deletions(-)
Permanent link
Title: Tools for splitting, applying and combining data
Diff between plyr versions 0.1.9 dated 2009-06-24 and 1.0 dated 2010-07-05
Description: plyr is a set of tools that solves a common set of
problems: you need to break a big problem down into manageable
pieces, operate on each pieces and then put all the pieces back
together. For example, you might want to fit a model to each
spatial location or time point in your study, summarise data by
panels or collapse high-dimensional arrays to simpler summary
statistics.
Author: Hadley Wickham
Maintainer: Hadley Wickham
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plyr-1.0/plyr/DESCRIPTION | 23 +-
plyr-1.0/plyr/NAMESPACE | 67 +++++++
plyr-1.0/plyr/NEWS | 57 +++++-
plyr-1.0/plyr/R/dimensions.r | 52 ++---
plyr-1.0/plyr/R/helper-arrange.r |only
plyr-1.0/plyr/R/helper-col-wise.r | 83 ++++-----
plyr-1.0/plyr/R/helper-count.r |only
plyr-1.0/plyr/R/helper-data-frame.r | 22 +-
plyr-1.0/plyr/R/helper-defaults.r | 14 -
plyr-1.0/plyr/R/helper-each.r | 27 +--
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plyr-1.0/plyr/R/helper-quick-df.r |only
plyr-1.0/plyr/R/helper-splat.r | 31 +--
plyr-1.0/plyr/R/helper-summarise.r | 41 ++--
plyr-1.0/plyr/R/helper-try.r | 70 ++++---
plyr-1.0/plyr/R/immutable.r |only
plyr-1.0/plyr/R/indexed-array.r | 29 +--
plyr-1.0/plyr/R/indexed-data-frame.r | 30 +--
plyr-1.0/plyr/R/join.r |only
plyr-1.0/plyr/R/ninteraction.r | 84 +++++----
plyr-1.0/plyr/R/ply-array.r | 205 +++++++++++------------
plyr-1.0/plyr/R/ply-data-frame.r | 160 ++++++++---------
plyr-1.0/plyr/R/ply-iterator.r |only
plyr-1.0/plyr/R/ply-list.r | 176 ++++++++++---------
plyr-1.0/plyr/R/ply-mapply.r | 175 ++++++++++---------
plyr-1.0/plyr/R/ply-null.r | 110 ++++++------
plyr-1.0/plyr/R/ply-replicate.r | 166 +++++++++---------
plyr-1.0/plyr/R/progress.r | 160 +++++++++--------
plyr-1.0/plyr/R/quote.r | 179 +++++++++++---------
plyr-1.0/plyr/R/rbind-matrix.r |only
plyr-1.0/plyr/R/rbind.r | 157 +++++++++--------
plyr-1.0/plyr/R/simplify-array.r | 34 ++-
plyr-1.0/plyr/R/simplify-data-frame.r | 18 +-
plyr-1.0/plyr/R/simplify-vector.r | 10 -
plyr-1.0/plyr/R/split-array.r | 73 ++++----
plyr-1.0/plyr/R/split-data-frame.r | 112 ++++++------
plyr-1.0/plyr/R/split-indices.r |only
plyr-1.0/plyr/R/split.r | 37 ++--
plyr-1.0/plyr/R/utils.r | 76 ++++++--
plyr-1.0/plyr/README.md |only
plyr-1.0/plyr/inst/doc |only
plyr-1.0/plyr/inst/tests/test-array.r |only
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204 files changed, 1394 insertions(+), 1086 deletions(-)
Title: Mutable objects for R.
Diff between mutatr versions 0.1.1 dated 2010-06-11 and 0.1.2 dated 2010-07-05
Description: Mutable prototype based objects with multiple inheritance.
Author: Hadley Wickham
Maintainer: Hadley Wickham
DESCRIPTION | 6 +++---
NAMESPACE | 1 +
R/utils.r | 1 +
3 files changed, 5 insertions(+), 3 deletions(-)
Title: Mokken Scale Analysis in R
Diff between mokken versions 2.1 dated 2009-12-17 and 2.3 dated 2010-07-05
Description: mokken contains functions for performing Mokken scale
analysis on test and questionnaire data. It includes an
automated item selection algorithm, and various checks of model
assumptions.
Author: L. Andries van der Ark
Maintainer: L. Andries van der Ark
mokken-2.1/mokken/CITATION |only
mokken-2.3/mokken/DESCRIPTION | 8 ++++----
mokken-2.3/mokken/R/check.iio.R | 14 ++++++++++----
mokken-2.3/mokken/R/check.restscore.R | 3 +--
mokken-2.3/mokken/R/plot.monotonicity.class.R | 6 ++----
mokken-2.3/mokken/R/plot.pmatrix.class.R | 6 ++----
mokken-2.3/mokken/R/plot.restscore.class.R | 15 ++++++++-------
mokken-2.3/mokken/R/summary.iio.class.R | 2 +-
mokken-2.3/mokken/R/zzz.r |only
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mokken-2.3/mokken/inst/CITATION | 8 ++++----
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mokken-2.3/mokken/man/aisp.Rd | 4 ++--
mokken-2.3/mokken/man/check.reliability.Rd | 9 ++++++---
mokken-2.3/mokken/man/mokken-package.Rd | 11 ++++++-----
mokken-2.3/mokken/man/plot.monotonicity.class.Rd | 4 +++-
mokken-2.3/mokken/man/plot.pmatrix.class.Rd | 4 +++-
mokken-2.3/mokken/man/plot.restscore.class.Rd | 4 +++-
mokken-2.3/mokken/man/transreas.Rd |only
20 files changed, 55 insertions(+), 43 deletions(-)
Title: An implementation of the Grammar of Graphics
Diff between ggplot2 versions 0.8.7 dated 2010-03-02 and 0.8.8 dated 2010-07-05
Description: An implementation of the grammar of graphics in R. It
combines the advantages of both base and lattice graphics:
conditioning and shared axes are handled automatically, and you
can still build up a plot step by step from multiple data
sources. It also implements a sophisticated multidimensional
conditioning system and a consistent interface to map data to
aesthetic attributes. See the ggplot2 website for more
information, documentation and examples.
Author: Hadley Wickham
Maintainer: Hadley Wickham
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ggplot2-0.8.7/ggplot2/man/zeroGrob-i3.rd |only
ggplot2-0.8.8/ggplot2/CHANGELOG | 17 +++
ggplot2-0.8.8/ggplot2/DESCRIPTION | 16 +--
ggplot2-0.8.8/ggplot2/NEWS | 37 +++++--
ggplot2-0.8.8/ggplot2/R/aaa-.r | 1
ggplot2-0.8.8/ggplot2/R/aaa-html.r | 9 -
ggplot2-0.8.8/ggplot2/R/aaa-rdoc.r | 6 -
ggplot2-0.8.8/ggplot2/R/aes.r | 9 +
ggplot2-0.8.8/ggplot2/R/coord-.r | 35 ++----
ggplot2-0.8.8/ggplot2/R/coord-cartesian-equal.r | 83 ++--------------
ggplot2-0.8.8/ggplot2/R/coord-map.r | 12 +-
ggplot2-0.8.8/ggplot2/R/coord-munch.r |only
ggplot2-0.8.8/ggplot2/R/coord-polar.r | 10 +
ggplot2-0.8.8/ggplot2/R/coord-transform.r | 5
ggplot2-0.8.8/ggplot2/R/facet-grid-.r | 4
ggplot2-0.8.8/ggplot2/R/facet-labels.r | 4
ggplot2-0.8.8/ggplot2/R/facet-wrap.r | 2
ggplot2-0.8.8/ggplot2/R/fortify-lm.r | 4
ggplot2-0.8.8/ggplot2/R/fortify-map.r | 2
ggplot2-0.8.8/ggplot2/R/geom-bar-.r | 2
ggplot2-0.8.8/ggplot2/R/geom-bar-histogram.r | 2
ggplot2-0.8.8/ggplot2/R/geom-errorh.r | 12 +-
ggplot2-0.8.8/ggplot2/R/geom-hline.r | 6 -
ggplot2-0.8.8/ggplot2/R/geom-path-.r | 2
ggplot2-0.8.8/ggplot2/R/geom-path-line.r | 11 ++
ggplot2-0.8.8/ggplot2/R/geom-ribbon-.r | 61 +++++++----
ggplot2-0.8.8/ggplot2/R/geom-segment.r | 2
ggplot2-0.8.8/ggplot2/R/geom-smooth.r | 6 -
ggplot2-0.8.8/ggplot2/R/geom-vline.r | 6 -
ggplot2-0.8.8/ggplot2/R/guides-axis.r | 3
ggplot2-0.8.8/ggplot2/R/layer.r | 16 +--
ggplot2-0.8.8/ggplot2/R/plot-render.r | 32 +++---
ggplot2-0.8.8/ggplot2/R/position-collide.r | 21 ++--
ggplot2-0.8.8/ggplot2/R/position-dodge.r | 25 ++--
ggplot2-0.8.8/ggplot2/R/position-stack.r | 30 ++++-
ggplot2-0.8.8/ggplot2/R/scale-continuous-.r | 37 +++++--
ggplot2-0.8.8/ggplot2/R/scale-discrete-colour.r | 2
ggplot2-0.8.8/ggplot2/R/scale-discrete-grey.r | 3
ggplot2-0.8.8/ggplot2/R/scale-discrete-position.r | 3
ggplot2-0.8.8/ggplot2/R/scale-identity.r | 4
ggplot2-0.8.8/ggplot2/R/scale-manual.r | 1
ggplot2-0.8.8/ggplot2/R/scales-.r | 2
ggplot2-0.8.8/ggplot2/R/stat-.r | 5
ggplot2-0.8.8/ggplot2/R/stat-bin.r | 5
ggplot2-0.8.8/ggplot2/R/stat-binhex.r | 5
ggplot2-0.8.8/ggplot2/R/stat-qq.r | 14 +-
ggplot2-0.8.8/ggplot2/R/stat-smooth-methods.r | 31 ++++-
ggplot2-0.8.8/ggplot2/R/stat-smooth.r | 2
ggplot2-0.8.8/ggplot2/R/stat-spoke.r | 4
ggplot2-0.8.8/ggplot2/R/utilities-colour.r | 4
ggplot2-0.8.8/ggplot2/R/utilities.r | 15 +-
ggplot2-0.8.8/ggplot2/R/xxx-digest.r | 9 -
ggplot2-0.8.8/ggplot2/R/xxx.r | 2
ggplot2-0.8.8/ggplot2/R/zxx.r | 11 +-
ggplot2-0.8.8/ggplot2/man/all-examples-run-ja.rd |only
ggplot2-0.8.8/ggplot2/man/all-rdoc-pages-create-oa.rd |only
ggplot2-0.8.8/ggplot2/man/alpha-um.rd |only
ggplot2-0.8.8/ggplot2/man/assign-viewports-wr.rd |only
ggplot2-0.8.8/ggplot2/man/bolus-ggplot-ku.rd |only
ggplot2-0.8.8/ggplot2/man/borders-yk.rd | 2
ggplot2-0.8.8/ggplot2/man/breaks-hr.rd |only
ggplot2-0.8.8/ggplot2/man/ceiling-date-j0.rd |only
ggplot2-0.8.8/ggplot2/man/check-breaks-and-labels-7z.rd | 9 +
ggplot2-0.8.8/ggplot2/man/col-hcl-wa.rd |only
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ggplot2-0.8.8/ggplot2/man/coord_map.rd | 6 -
ggplot2-0.8.8/ggplot2/man/cut-interval-0w.rd |only
ggplot2-0.8.8/ggplot2/man/cweave-mh.rd |only
ggplot2-0.8.8/ggplot2/man/dhist-qj.rd |only
ggplot2-0.8.8/ggplot2/man/dist-euclidean-pr.rd |only
ggplot2-0.8.8/ggplot2/man/dist-polar-ep.rd |only
ggplot2-0.8.8/ggplot2/man/facet_grid.rd | 4
ggplot2-0.8.8/ggplot2/man/floor-date-k0.rd |only
ggplot2-0.8.8/ggplot2/man/force-matrix-sn.rd |only
ggplot2-0.8.8/ggplot2/man/fortify-4x.rd |only
ggplot2-0.8.8/ggplot2/man/fortify-lm-nd.rd | 4
ggplot2-0.8.8/ggplot2/man/geom_bar.rd | 2
ggplot2-0.8.8/ggplot2/man/geom_errorbarh.rd | 6 -
ggplot2-0.8.8/ggplot2/man/geom_histogram.rd | 2
ggplot2-0.8.8/ggplot2/man/geom_line.rd | 11 ++
ggplot2-0.8.8/ggplot2/man/geom_path.rd | 2
ggplot2-0.8.8/ggplot2/man/geom_ribbon.rd | 5
ggplot2-0.8.8/ggplot2/man/geom_smooth.rd | 2
ggplot2-0.8.8/ggplot2/man/gg-apply-65.rd |only
ggplot2-0.8.8/ggplot2/man/ggdist-r8.rd |only
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ggplot2-0.8.8/ggplot2/man/pos-dodge-7x.rd |only
ggplot2-0.8.8/ggplot2/man/pos-stack-mt.rd |only
ggplot2-0.8.8/ggplot2/man/position_dodge.rd | 23 ++--
ggplot2-0.8.8/ggplot2/man/position_stack.rd | 23 +++-
ggplot2-0.8.8/ggplot2/man/predictdf-62.rd | 1
ggplot2-0.8.8/ggplot2/man/print-theme-d1.rd |only
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ggplot2-0.8.8/ggplot2/man/scale_grey.rd | 3
ggplot2-0.8.8/ggplot2/man/scale_hue.rd | 1
ggplot2-0.8.8/ggplot2/man/scale_identity.rd | 4
ggplot2-0.8.8/ggplot2/man/scale_manual.rd | 1
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ggplot2-0.8.8/ggplot2/man/stat_bin.rd | 4
ggplot2-0.8.8/ggplot2/man/stat_qq.rd | 10 +
ggplot2-0.8.8/ggplot2/man/stat_smooth.rd | 2
ggplot2-0.8.8/ggplot2/man/summarise-by-x-ek.rd |only
ggplot2-0.8.8/ggplot2/man/summary-ggplot-i5.rd |only
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ggplot2-0.8.8/ggplot2/man/update-stat-defaults-vm.rd |only
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227 files changed, 469 insertions(+), 313 deletions(-)
Title: Kriging methods for computer experiments
Diff between DiceKriging versions 1.0 dated 2010-02-23 and 1.1 dated 2010-07-05
Description: Estimation, validation and prediction of kriging models.
Important functions : km, print.km, plot.km, predict.km.
Author: O. Roustant, D. Ginsbourger, Y. Deville
Maintainer: O. Roustant
CHANGELOG |only
DESCRIPTION | 8 ++++----
R/km.R | 9 ++++++++-
R/km1Nugget.R | 1 +
R/km1Nugget.init.R | 2 +-
R/kmStruct.R | 8 ++++----
man/DiceKriging-package.Rd | 4 ++--
man/km.Rd | 20 ++++++++++----------
man/km1Nugget.Rd | 1 +
man/km1Nugget.init.Rd | 4 ++--
man/kmNoNugget.init.Rd | 4 ++--
man/kmNuggets.init.Rd | 4 ++--
12 files changed, 37 insertions(+), 28 deletions(-)
Title: Various plotting functions
Diff between plotrix versions 2.9-4 dated 2010-06-25 and 2.9-5 dated 2010-07-05
Description: Lots of plots, various labeling, axis and color scaling
functions.
Author: Jim Lemon, Ben Bolker, Sander Oom, Eduardo Klein, Barry
Rowlingson, Hadley Wickham, Anupam Tyagi, Olivier Eterradossi,
Gabor Grothendieck, Michael Toews, John Kane, Rolf Turner, Carl
Witthoft, Julian Stander, Thomas Petzoldt, Remko Duursma, Elisa
Biancotto, Ofir Levy, Christophe Dutang
Maintainer: Jim Lemon
DESCRIPTION | 8 ++++----
INDEX | 1 +
NEWS | 5 +++++
R/dispersion.R | 19 ++++++++++++++-----
R/getFigCtr.R | 10 ++++++----
R/kiteChart.R |only
R/spread.labels.R | 3 ++-
demo/plotrix.R | 4 ++++
man/dispersion.Rd | 5 ++++-
man/getFigCtr.Rd | 23 ++++++++++++++++-------
man/kiteChart.Rd |only
11 files changed, 56 insertions(+), 22 deletions(-)
Title: Keep track of dates in terms of months
Diff between mondate versions 0.9 dated 2010-06-08 and 0.9.4 dated 2010-07-05
Description: Keep track of dates in month units. Perform date
arithmetic. Allow for date arithmetic when dates are measured
in units of years or days.
Author: Dan Murphy
Maintainer: Dan Murphy
DESCRIPTION | 11 +-
NAMESPACE | 10 +-
R/mondate.r | 171 ++++++++++++++++++++++++++---------
man/Coersion.from.mondate-methods.rd | 13 --
man/array-methods.Rd | 11 +-
man/as.data.frame.mondate.Rd | 60 ++++++------
man/c-methods.rd | 97 ++++++++++++-------
man/displayFormat-methods.Rd |only
man/format.mondate.rd |only
man/misc-methods.Rd | 4
man/mondate-class.Rd | 25 +++--
man/mondate-methods.Rd | 21 ++--
man/numarray-class.Rd |only
man/print-methods.Rd | 2
man/seq.mondate.Rd | 37 +++----
man/timeunits-methods.Rd |only
man/year-methods.Rd | 8 -
man/z[-methods.Rd | 38 ++++++-
18 files changed, 333 insertions(+), 175 deletions(-)
Title: Analysis of geostatistical data
Diff between geoR versions 1.6-27 dated 2009-10-15 and 1.6-28 dated 2010-07-05
Description: Geostatistical analysis including traditional,
likelihood-based and Bayesian methods.
Author: Paulo J. Ribeiro Jr
Maintainer: Paulo J. Ribeiro Jr
DESCRIPTION | 8 ++---
INDEX | 12 +++----
R/auxiliar.R | 21 ++++++++-----
R/geobayes.R | 30 ++++++++++--------
R/geodata.R | 70 ++++++++++++++++++++++----------------------
R/simul.R | 14 +++-----
R/variofit.R | 1
inst/doc/CHANGES | 25 +++++++++++++++
man/globalvar.Rd | 38 +++++++++++++----------
man/grf.Rd | 3 +
man/krige.bayes.Rd | 14 ++++----
man/lines.variomodel.grf.Rd | 6 +--
man/points.geodata.Rd | 2 -
man/predict.BGCCM.Rd | 6 +++
man/set.coords.lims.Rd | 4 +-
man/varcovBGCCM.Rd | 24 ++++++++-------
16 files changed, 161 insertions(+), 117 deletions(-)
Title: R/C++ Tools for Literate Statistical Practice
Diff between cxxPack versions 7.0.4 dated 2010-06-15 and 7.0.5 dated 2010-07-05
Description: Builds on the Rcpp package/library by providing an
application layer library on the C++ side that includes models
of fundamental R data structures like data frames and time
series. Includes an extensible collection of tools like special
functions and a financial date library. Extends Sweave by
permitting vignettes (or research compendium docs) to include
C++ code chunks. This package/library might be used to develop
R and C++ solutions in parallel, to speed the transition from
experimental R code to production C++ code, or to develop rich
research compendium documents following literate statistical
practice that have embedded R and C++ code chunks. There is a
package vignette that provides many examples.
Author: Dominick Samperi
Maintainer: Dominick Samperi
cxxPack-7.0.4/cxxPack/inst/doc/.tex |only
cxxPack-7.0.5/cxxPack/DESCRIPTION | 10 +++++-----
cxxPack-7.0.5/cxxPack/NEWS | 5 ++++-
cxxPack-7.0.5/cxxPack/inst/doc/auto |only
cxxPack-7.0.5/cxxPack/inst/doc/cpp/buildlog.txt |only
cxxPack-7.0.5/cxxPack/inst/doc/cxxPackGuide.Rnw | 4 ++--
cxxPack-7.0.5/cxxPack/inst/doc/cxxPackGuide.pdf |binary
cxxPack-7.0.5/cxxPack/inst/doc/makepdf.sh | 1 -
cxxPack-7.0.5/cxxPack/inst/include/FinDate.hpp | 8 ++++----
cxxPack-7.0.5/cxxPack/inst/include/cxxUtils.hpp | 2 ++
cxxPack-7.0.5/cxxPack/inst/include/optimize.hpp | 4 ++--
cxxPack-7.0.5/cxxPack/src/cxxUtils.cpp | 2 ++
12 files changed, 21 insertions(+), 15 deletions(-)
Title: ace() and avas() for selecting regression transformations
Diff between acepack versions 1.3-2.3 dated 2010-01-19 and 1.3-3.0 dated 2010-07-05
Description: ACE and AVAS methods for choosing regression
transformations.
Author: Phil Spector, Jerome Friedman, Robert Tibshirani, Thomas Lumley
Maintainer: Jonathan Baron
CHANGES |only
DESCRIPTION | 6 -
R/acepack.R | 268 +++++++++++++++++++++---------------------------------------
ace.doc |binary
man/ace.Rd | 46 +++++++++-
man/avas.Rd | 46 +++++++++-
6 files changed, 183 insertions(+), 183 deletions(-)