Title: Inference of trait associations with SNP haplotypes and other
attributes using the EM Algorithm
Diff between hapassoc versions 1.2-3 dated 2009-11-25 and 1.2-4 dated 2010-07-08
Description: The following R functions are used for inference of trait
associations with haplotypes and other covariates in
generalized linear models. The functions are developed
primarily for data collected in cohort or cross-sectional
studies. They can accommodate uncertain haplotype phase and
handle missing genotypes at some SNPs.
Author: K. Burkett
Maintainer: K. Burkett
hapassoc-1.2-3/hapassoc/inst/doc/hapassoc.bbl |only
hapassoc-1.2-4/hapassoc/DESCRIPTION | 6 +++---
hapassoc-1.2-4/hapassoc/R/hapassoc.R | 17 ++++++++++++++++-
hapassoc-1.2-4/hapassoc/inst/ChangeLog | 7 +++++++
hapassoc-1.2-4/hapassoc/inst/doc/hapassoc.pdf |binary
hapassoc-1.2-4/hapassoc/inst/doc/jss.bst |only
hapassoc-1.2-4/hapassoc/man/hapassoc.Rd | 3 ++-
7 files changed, 28 insertions(+), 5 deletions(-)
Title: Export R objects to several markup languages
Diff between ascii versions 0.6-4 dated 2010-06-03 and 0.7 dated 2010-07-08
Description: Coerce R object to asciidoc, txt2tags, restructuredText,
org or textile syntax. Package comes with a set of drivers for
Sweave.
Author: David Hajage
Maintainer: David Hajage
ascii-0.6-4/ascii/essai.aux |only
ascii-0.6-4/ascii/essai.dvi |only
ascii-0.6-4/ascii/essai.log |only
ascii-0.6-4/ascii/essai.tex |only
ascii-0.6-4/ascii/head.tex |only
ascii-0.7/ascii/DESCRIPTION | 8 ++++----
ascii-0.7/ascii/NAMESPACE | 2 +-
ascii-0.7/ascii/NEWS | 5 +++++
ascii-0.7/ascii/R/RweaveAsciidoc.r | 10 ++--------
ascii-0.7/ascii/R/RweaveOrg.r | 8 ++------
ascii-0.7/ascii/R/RweaveReST.r | 8 ++------
ascii-0.7/ascii/R/RweaveT2t.r | 8 ++------
ascii-0.7/ascii/R/RweaveTextile.r | 8 ++------
ascii-0.7/ascii/R/cacheSweaveAsciidoc.r |only
ascii-0.7/ascii/R/cacheSweaveOrg.r |only
ascii-0.7/ascii/R/cacheSweaveReST.r |only
ascii-0.7/ascii/R/cacheSweaveT2t.r |only
ascii-0.7/ascii/R/cacheSweaveTextile.r |only
ascii-0.7/ascii/R/paste.matrix.r | 2 +-
ascii-0.7/ascii/R/weaverAsciidoc.r |only
ascii-0.7/ascii/R/weaverOrg.r |only
ascii-0.7/ascii/R/weaverReST.r |only
ascii-0.7/ascii/R/weaverT2t.r |only
ascii-0.7/ascii/R/weaverTextile.r |only
ascii-0.7/ascii/man/RweaveAsciidoc.Rd | 19 ++++++++++++++-----
ascii-0.7/ascii/man/RweaveOrg.Rd | 19 ++++++++++++++-----
ascii-0.7/ascii/man/RweaveReST.Rd | 17 +++++++++++++----
ascii-0.7/ascii/man/RweaveT2t.Rd | 17 +++++++++++++----
ascii-0.7/ascii/man/RweaveTextile.Rd | 17 +++++++++++++----
29 files changed, 88 insertions(+), 60 deletions(-)
Title: Algorithms for Quantitative Pedology
Diff between aqp versions 0.85 dated 2010-06-20 and 0.88 dated 2010-07-08
Description: R package for working with and plotting soil profile data.
Author: Dylan Beaudette
Maintainer: Dylan Beaudette
DESCRIPTION | 10 +++++-----
NEWS |only
R/profile_compare.R | 4 ++--
R/soil_slotting.R | 31 ++++++++++++++++++++++++-------
R/unroll.R | 16 ++++++++++++----
TODO |only
man/profile_compare.Rd | 3 ++-
man/random_profile.Rd | 10 ++++++----
man/soil.slot.Rd | 7 +++++--
man/soil.slot.multiple.Rd | 4 +++-
man/unroll.Rd | 5 +++--
11 files changed, 62 insertions(+), 28 deletions(-)
Title: Statistical inference for partially observed Markov processes
Diff between pomp versions 0.30-1 dated 2010-06-29 and 0.31-1 dated 2010-07-08
Description: Inference methods for partially-observed Markov processes
Author: Aaron A. King, Edward L. Ionides, Carles Breto, Steve Ellner,
Bruce Kendall, Helen Wearing, Matthew J. Ferrari, Michael
Lavine
Maintainer: Aaron A. King
pomp-0.30-1/pomp/R/trajmatch.R |only
pomp-0.30-1/pomp/man/trajmatch.Rd |only
pomp-0.31-1/pomp/DESCRIPTION | 17 ++--
pomp-0.31-1/pomp/NAMESPACE | 11 +-
pomp-0.31-1/pomp/R/compare.pmcmc.R |only
pomp-0.31-1/pomp/R/mif.R | 2
pomp-0.31-1/pomp/R/pfilter.R | 1
pomp-0.31-1/pomp/R/pmcmc-methods.R |only
pomp-0.31-1/pomp/R/pmcmc.R |only
pomp-0.31-1/pomp/R/pomp-methods.R | 69 ++++++++----------
pomp-0.31-1/pomp/R/simulate-pomp.R | 3
pomp-0.31-1/pomp/R/traj-match.R |only
pomp-0.31-1/pomp/inst/ChangeLog | 19 ++++
pomp-0.31-1/pomp/inst/NEWS | 7 +
pomp-0.31-1/pomp/inst/doc/advanced_topics_in_pomp.pdf |binary
pomp-0.31-1/pomp/inst/doc/intro_to_pomp.Rnw | 2
pomp-0.31-1/pomp/inst/doc/intro_to_pomp.pdf |binary
pomp-0.31-1/pomp/inst/doc/pomp.bib | 42 ++++++++++
pomp-0.31-1/pomp/man/mif-class.Rd | 2
pomp-0.31-1/pomp/man/pmcmc-class.Rd |only
pomp-0.31-1/pomp/man/pmcmc-methods.Rd |only
pomp-0.31-1/pomp/man/pmcmc.Rd |only
pomp-0.31-1/pomp/man/pomp-methods.Rd | 11 +-
pomp-0.31-1/pomp/man/simulate-pomp.Rd | 6 +
pomp-0.31-1/pomp/man/traj-match.Rd |only
pomp-0.31-1/pomp/tests/ou2-pmcmc.R |only
pomp-0.31-1/pomp/tests/rw2.R | 6 -
pomp-0.31-1/pomp/tests/rw2.Rout.save | 17 +---
28 files changed, 140 insertions(+), 75 deletions(-)
Title: procedures for automated interpolation - methods only to be used
interactively, not included in intamap package
Diff between intamapInteractive versions 1.0-8 dated 2009-12-02 and 1.0-9 dated 2010-07-08
More information about intamapInteractive at CRAN
Description: A package that provides additional functionality for
interpolation spatial interpolation.
Author: Edzer Pebesma
Maintainer: Edzer J. Pebesma
DESCRIPTION | 10 +++++-----
man/addManual.Rd |only
svn-commit.2.tmp |only
svn-commit.tmp |only
4 files changed, 5 insertions(+), 5 deletions(-)
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