Title: Read, write, format Excel 2007 (xlsx) files
Diff between xlsx versions 0.2.1 dated 2010-05-16 and 0.2.2 dated 2010-07-24
Description: Provide R functions to read/write/format Excel 2007 (xlsx)
file formats.
Author: Adrian A. Dragulescu
Maintainer: Adrian A. Dragulescu
DESCRIPTION | 8 +++---
NEWS | 16 ++++++++++++
R/Cell.R | 6 +++-
R/read.xlsx.R | 8 ++++--
R/write.xlsx.R | 5 +++-
inst/doc/xlsx.pdf |binary
inst/tests/test.export.R | 13 ++++++++++
man/CellStyle.Rd | 6 +++-
man/read.xlsx.Rd | 7 ++++-
man/write.xlsx.Rd | 2 +
man/xlsx-package.Rd | 4 +--
other/make.package.R | 58 +++++++++++++++++++++++++----------------------
12 files changed, 89 insertions(+), 44 deletions(-)
Title: X12 - wrapper function and GUI
Diff between x12 versions 0.0-6 dated 2009-02-05 and 0.0-7 dated 2010-07-24
Description: A wrapper function and GUI for the X12 binaries under
windows
Author: Alexander Kowarik
Maintainer: Alexander Kowarik
DESCRIPTION | 25 ++++++++++++++-----------
R/X12GUI.R | 6 +++---
2 files changed, 17 insertions(+), 14 deletions(-)
Title: Functions to use vegetation databases (Turboveg) for vegetation
analyses in R
Diff between vegdata versions 0.1.5 dated 2010-03-16 and 0.1.8 dated 2010-07-24
Description: Handling of vegetation data sets from Turboveg Databases.
Taxonomic valuation for German Taxonomical Standard List.
Author: Florian Jansen
Maintainer: Florian Jansen
DESCRIPTION | 8 ++--
R/tax.r | 19 +++++-----
R/tv.coverperc.r | 12 ++++--
R/tv.eco.r | 49 +++++++++-----------------
R/tv.mono.r | 4 +-
R/tv.refl.r | 4 +-
R/tv.site.r | 2 -
R/tv.taxval-old.r |only
R/tv.taxval.r | 3 +
R/tv.veg.r | 6 +--
inst/doc/vegdata.pdf |binary
inst/extdata/Species/Germansl1.1/ecodbase.dbf |binary
inst/extdata/Species/Germansl1.1/ecodbase.set |binary
man/tax.rd | 4 --
man/tv.coverperc.rd | 3 +
man/tv.eco.rd | 2 -
16 files changed, 57 insertions(+), 59 deletions(-)
Title: An interface for creating GUIs modeled in part after traits UI
module for python.
Diff between traitr versions 0.7 dated 2010-03-20 and 0.9 dated 2010-07-24
Description: An interface for creating GUIs modeled in part after the
traits UI module for python. The basic design takes advantage
of the model-view-controller design pattern. The interface
makes basic dialogs quite easy to produce.
Author: John Verzani
Maintainer: John Verzani
ChangeLog | 40 +
DESCRIPTION | 11
NAMESPACE | 14
NEWS | 26 +
R/base.R | 15
R/container.R | 367 +++++++++++------
R/controller.R | 31 +
R/dialog.R | 346 +++++++++++++---
R/editor.R | 207 ++++------
R/helpers.R | 85 ++--
R/itemgroup.R | 148 ++++---
R/itemlist.R | 49 +-
R/items.R | 885 ++++++++++++++++++++++++-------------------
R/loadanimation.R |only
R/traitR-package.R | 39 +
R/view.R | 3
TODO.txt | 12
inst/doc/spotfire.png |only
inst/doc/traitr.R |only
inst/doc/traitr.Rnw | 444 +++++++++++++++++++--
inst/doc/traitr.pdf |binary
inst/doc/uml-dialog.png |only
inst/doc/uml-editor.png |only
inst/doc/uml-itemgroup.png |only
inst/doc/uml-items.png |only
inst/doc/uml-model.png |only
inst/doc/uml-view.png |only
inst/doc/user2010-examples.R |only
inst/images/loading.gif |only
inst/images/spotfire.png |only
man/Container.Rd | 11
man/Editor.Rd | 2
man/Item.Rd | 10
man/ItemGroup.Rd | 4
man/aContainer.Rd | 26 -
man/aContext.Rd | 10
man/aDialog.Rd | 107 +++++
man/aFrame.Rd | 10
man/aGroup.Rd | 11
man/aNotebook.Rd | 16
man/aNotebookPage.Rd | 9
man/aPanedGroup.Rd | 16
man/aTableLayout.Rd | 13
man/anExpandGroup.Rd | 10
man/anItemGroup.Rd | 12
man/buttonItem.Rd | 34 +
man/choiceItem.Rd | 12
man/dateItem.Rd | 8
man/dialogMaker.Rd |only
man/expressionItem.Rd | 2
man/graphicDeviceItem.Rd | 9
man/imageItem.Rd | 6
man/itemList.Rd | 14
man/labelItem.Rd | 1
man/loadingAnimation.Rd |only
man/numericItem.Rd | 1
man/rangeItem.Rd | 6
man/separatorItem.Rd | 1
man/stringItem.Rd | 1
man/tableItem.Rd | 3
man/traitR-package.Rd | 22 -
man/trueFalseItem.Rd | 4
man/variableSelectorItem.Rd | 11
testing/test-mvc.R | 34 -
64 files changed, 2193 insertions(+), 965 deletions(-)
Title: Bayesian treed Gaussian process models
Diff between tgp versions 2.3-3 dated 2010-04-25 and 2.3-4 dated 2010-07-24
Description: Bayesian nonstationary, semiparametric nonlinear
regression and design by treed Gaussian processes with jumps to
the limiting linear model (LLM). Special cases also
implemented include Bayesian linear models, CART, treed linear
models, stationary separable and isotropic Gaussian processes.
Provides 1-d and 2-d plotting functions (with projection and
slice capabilities) and tree drawing, designed for
visualization of tgp-class output. Sensitivity analysis and
multi-resolution models are supported. Sequential experimental
design and adaptive sampling functions are also provided,
including ALM, ALC, and expected improvement. The latter
supports derivative-free optimization of noisy black-box
functions.
Author: Robert B. Gramacy
Maintainer: Robert B. Gramacy
ChangeLog | 10 ++++++++
DESCRIPTION | 6 ++--
R/btgp.R | 6 ++--
man/btgp.Rd | 16 +++++-------
man/default.itemps.Rd | 3 --
man/exp2d.Z.Rd | 3 --
man/exp2d.rand.Rd | 3 --
man/friedman.1.data.Rd | 23 ++----------------
man/tgp.default.params.Rd | 12 ++++-----
src/corr.cc | 1
src/exp.cc | 3 ++
src/exp_sep.cc | 5 +++-
src/matern.cc | 3 ++
src/matrix.c | 57 ++++++++++++++++++++++++++++++++++++++--------
src/matrix.h | 6 +++-
src/model.cc | 2 -
src/tree.cc | 2 -
17 files changed, 100 insertions(+), 61 deletions(-)
Title: Toolkit for the plotting and analysis of stratigraphic and
palaeontological data
Diff between stratigraph versions 0.61 dated 2010-06-08 and 0.62 dated 2010-07-24
Description: A collection of tools for plotting and analyzing
paleontological and geological data distributed through through
time in stratigraphic cores or sections. Includes some
miscellaneous functions for handling other kinds of
palaeontological and paleoecological data.
Author: Walton A. Green
Maintainer: Walton A. Green
DESCRIPTION | 8 ++++----
R/oe.rates.R | 23 ++++++++++++++++++++---
man/oe.rates.Rd | 6 ++++--
man/stratigraph.package.Rd | 8 +++++---
4 files changed, 33 insertions(+), 12 deletions(-)
Title: Interface between GRASS 6 geographical information system and R
Diff between spgrass6 versions 0.6-16 dated 2010-04-03 and 0.6-19 dated 2010-07-24
Description: Interpreted interface between GRASS 6 geographical
information system and R, based on starting R from within the
GRASS environment, or running free-standing R in a temporary
GRASS location; the package provides facilities for using all
GRASS commands from the R command line.
Author: Roger Bivand
Maintainer: Roger Bivand
ChangeLog | 20 ++++++++++-
DESCRIPTION | 8 ++--
R/bin_link.R | 55 +++++++++++++++----------------
R/vect_link.R | 97 +++++++++++++++++++++++++++++++++----------------------
R/xml1.R | 6 ++-
inst/ChangeLog | 20 ++++++++++-
man/readVECT6.Rd | 4 +-
7 files changed, 136 insertions(+), 74 deletions(-)
Title: Spatial dependence: weighting schemes, statistics and models
Diff between spdep versions 0.5-14 dated 2010-06-23 and 0.5-16 dated 2010-07-24
Description: A collection of functions to create spatial weights matrix
objects from polygon contiguities, from point patterns by
distance and tesselations, for summarising these objects, and
for permitting their use in spatial data analysis, including
regional aggregation by minimum spanning tree; a collection of
tests for spatial autocorrelation, including global Moran's I,
APLE, Geary's C, Hubert/Mantel general cross product statistic,
Empirical Bayes estimates and Assunção/Reis Index, Getis/Ord G
and multicoloured join count statistics, local Moran's I and
Getis/Ord G, saddlepoint approximations and exact tests for
global and local Moran's I; and functions for estimating
spatial simultaneous autoregressive (SAR) lag and error models,
impact measures for lag models, weighted and unweighted SAR and
CAR spatial regression models, semi-parametric and Moran
eigenvector spatial filtering, GM SAR error models, and
generalized spatial two stage least squares models.
Author: Roger Bivand
Maintainer: Roger Bivand
ChangeLog | 959 ++++++++++++++++++++++++++++++++-------------------
DESCRIPTION | 8
INDEX | 2
NAMESPACE | 370 +++++++++----------
R/autocov.R | 8
R/dnearneigh.R | 10
R/knearneigh.R | 8
R/kpgm_new.R | 964 +++++++++++++++++++++++++++++-----------------------
R/nbdists.R | 10
R/plot.nb.R | 3
R/summary.nb.R | 8
R/summary.spsarlm.R | 2
R/tri2nb.R | 3
inst/ChangeLog | 959 ++++++++++++++++++++++++++++++++-------------------
inst/doc/CO69.pdf |binary
inst/doc/sids.pdf |binary
man/GMerrorsar.Rd | 219 +++++------
man/errorsarlm.Rd | 6
man/gstsls.Rd |only
man/lagsarlm.Rd | 6
man/spautolm.Rd | 4
man/tri2nb.Rd | 1
22 files changed, 2092 insertions(+), 1458 deletions(-)
Title: The sparr package: SPAtial Relative Risk
Diff between sparr versions 0.1-7 dated 2010-04-16 and 0.2-1 dated 2010-07-24
Description: Provides functions to estimate kernel-smoothed relative
risk functions and perform subsequent inference.
Author: T.M. Davies, M.L. Hazelton and J.C. Marshall
Maintainer: T.M.D.
DESCRIPTION | 8
R/KSPEC.R | 6
R/bivariate.density.R | 76 +++++---
R/compute.coord.R | 4
R/dupli.data.frame.R |only
R/plot.rrs.R | 31 +++
R/print.bivden.R | 4
R/risk.R | 5
R/rsmc.R |only
R/run_ppp.R | 4
R/tol3d.R |only
R/tol3d.component.R |only
R/tolerance.R | 418 ++++++++++++++++++++++++-----------------------
R/zzz.R | 2
inst/CITATION | 7
man/KBivQ.Rd | 2
man/OS.Rd | 6
man/PBC.Rd | 2
man/bivariate.density.Rd | 34 ++-
man/plot.bivden.Rd | 13 +
man/risk.Rd | 12 -
man/sparr-internal.Rd | 11 -
man/sparr-package.Rd | 19 +-
man/tolerance.Rd | 34 ++-
24 files changed, 405 insertions(+), 293 deletions(-)
Title: classes and methods for spatial data
Diff between sp versions 0.9-65 dated 2010-06-23 and 0.9-66 dated 2010-07-24
Description: A package that provides classes and methods for spatial
data. The classes document where the spatial location
information resides, for 2D or 3D data. Utility functions are
provided, e.g. for plotting data as maps, spatial selection, as
well as methods for retrieving coordinates, for subsetting,
print, summary, etc.
Author: Edzer Pebesma
Maintainer: Edzer Pebesma
ChangeLog | 48 ++++++++++++++
DESCRIPTION | 8 +-
NAMESPACE | 8 ++
R/SpatialGrid-methods.R | 3
R/SpatialLines-methods.R | 126 ++++++++++++++++++++++++++++---------
R/SpatialLinesDataFrame-methods.R | 2
R/SpatialPoints-methods.R | 1
R/SpatialPointsDataFrame-methods.R | 6 +
R/SpatialPolygons-methods.R | 2
R/point.in.polygon.R | 46 +++++++------
R/spsample.R | 6 +
inst/ChangeLog | 48 ++++++++++++++
inst/doc/sp.pdf |binary
man/Line.Rd | 2
man/nowrapSpatialLines.Rd | 2
man/recenter-methods.Rd | 4 -
16 files changed, 248 insertions(+), 64 deletions(-)
Title: Soil spectral data exploration and regression functions
Diff between soil.spec versions 1.3 dated 2010-06-19 and 1.4 dated 2010-07-24
Description: This package combines existing R functions with new code
for soil spectral analysis. The result is an easy to use tool
for (i) importing of spc-files, (ii) principal component
analysis, (iii) sample selection using the Kennard-Stone
algorithm, (iv) spectral transformation and (v) comparison of
regression methods.
Author: Thomas Terhoeven-Urselmans
Maintainer: Thomas Terhoeven-Urselmans
DESCRIPTION | 8 ++++----
R/isric.R |only
R/ken.sto.R | 4 ++--
R/plot.ken.sto.R | 8 ++++----
R/regr.R | 2 +-
man/isric.Rd |only
man/ken.sto.Rd | 2 +-
man/make.comp.Rd | 2 +-
man/pc.space.Rd | 2 +-
man/prco.Rd | 2 +-
man/read.spc.Rd | 2 +-
man/regr.Rd | 2 +-
man/soil.spec-package.Rd | 4 ++--
man/trans.Rd | 2 +-
14 files changed, 20 insertions(+), 20 deletions(-)
Title: Simulation of synthetic populations for surveys based on sample
data
Diff between simPopulation versions 0.1.2 dated 2010-06-21 and 0.1.3 dated 2010-07-24
Description: Simulate populations for surveys based on sample data with
special application to EU-SILC.
Author: Stefan Kraft and Andreas Alfons
Maintainer: Andreas Alfons
DESCRIPTION | 8 ++++----
NAMESPACE | 8 ++++++++
NEWS | 6 ++++++
man/simPopulation-package.Rd | 4 ++--
4 files changed, 20 insertions(+), 6 deletions(-)
Title: Small-Sample Adjustments for Wald tests Using Sandwich
Estimators
Diff between saws versions 0.9-3.1 dated 2010-03-01 and 0.9-3.3 dated 2010-07-24
Description: Tests coefficients with sandwich estimator of variance and
with small samples. Regression types supported are gee, cox
regression, and conditional logistic regression.
Author: Michael Fay
Maintainer: Michael Fay
DESCRIPTION | 8 ++++----
NEWS |only
R/dfCalc.R | 6 ++++++
inst/doc/FayGraubard.pdf |binary
4 files changed, 10 insertions(+), 4 deletions(-)
Title: R Workspace Management
Diff between rwm versions 1.35 dated 2010-01-07 and 1.49 dated 2010-07-24
Description: R workspace management functions. The principal functions
are loadws, attachws and savews. This packages provides a
convenient method of accessing with R workspaces that is OS
independent. In simple situations, it may replace the need for
R packages.
Author: A.I. McLeod
Maintainer: A.I. McLeod
rwm-1.35/rwm/R/initrwm.R |only
rwm-1.35/rwm/inst/doc/APL.Rnw |only
rwm-1.35/rwm/inst/doc/APL.pdf |only
rwm-1.35/rwm/inst/doc/rwmV.Rnw |only
rwm-1.35/rwm/inst/doc/rwmV.bib |only
rwm-1.35/rwm/inst/doc/rwmV.pdf |only
rwm-1.35/rwm/man/initrwm.Rd |only
rwm-1.49/rwm/DESCRIPTION | 19 +-
rwm-1.49/rwm/NAMESPACE |only
rwm-1.49/rwm/R/attachws.R | 95 +++++++-----
rwm-1.49/rwm/R/clearws.R | 41 ++---
rwm-1.49/rwm/R/cws.R | 18 +-
rwm-1.49/rwm/R/loadws.R | 274 ++++++++++++++++++++-----------------
rwm-1.49/rwm/R/rwm-internal.R | 22 +-
rwm-1.49/rwm/R/rwmInit.R |only
rwm-1.49/rwm/R/savews.R | 180 ++++++++++++------------
rwm-1.49/rwm/R/testrwm.R | 33 ++--
rwm-1.49/rwm/inst/doc/UsingRwm.Rnw |only
rwm-1.49/rwm/inst/doc/UsingRwm.bib |only
rwm-1.49/rwm/inst/doc/UsingRwm.pdf |only
rwm-1.49/rwm/man/attachws.Rd | 146 +++++++++----------
rwm-1.49/rwm/man/loadws.Rd | 190 ++++++++++++-------------
rwm-1.49/rwm/man/rwm-package.Rd | 197 ++++++++++++--------------
rwm-1.49/rwm/man/rwmInit.Rd |only
rwm-1.49/rwm/man/savews.Rd | 196 +++++++++++++-------------
rwm-1.49/rwm/man/testrwm.Rd | 126 +++++++++--------
26 files changed, 789 insertions(+), 748 deletions(-)
Title: Redis client for R
Diff between rredis versions 1.3 dated 2010-05-01 and 1.4 dated 2010-07-24
Description: The 'redis' package provides a simple R client for the
Redis persistent key-value database available from
http://code.google.com/p/redis/.
Author: B. W. Lewis
Maintainer: B. W. Lewis
rredis-1.3/rredis/man/redisZInter.Rd |only
rredis-1.3/rredis/man/redisZRevRange.Rd |only
rredis-1.3/rredis/man/redisZRevRank.Rd |only
rredis-1.3/rredis/man/redisZUnion.Rd |only
rredis-1.4/rredis/DESCRIPTION | 8 +-
rredis-1.4/rredis/NEWS | 5 +
rredis-1.4/rredis/R/controlCMD.R | 2
rredis-1.4/rredis/R/hashCMD.R | 7 +
rredis-1.4/rredis/R/redis-internal.R | 45 +++++++++--
rredis-1.4/rredis/R/strValCMD.R | 11 ++
rredis-1.4/rredis/R/zsetVal.R | 108 +++++++++++++++-------------
rredis-1.4/rredis/inst/doc/rredis.Rnw | 4 -
rredis-1.4/rredis/inst/doc/rredis.pdf |binary
rredis-1.4/rredis/man/redisConnect.Rd | 7 +
rredis-1.4/rredis/man/redisGet.Rd | 8 +-
rredis-1.4/rredis/man/redisMGet.Rd | 7 +
rredis-1.4/rredis/man/redisZAdd.Rd | 9 +-
rredis-1.4/rredis/man/redisZCard.Rd | 12 +--
rredis-1.4/rredis/man/redisZIncrBy.Rd | 18 +---
rredis-1.4/rredis/man/redisZInterStore.Rd |only
rredis-1.4/rredis/man/redisZRange.Rd | 42 +++++++---
rredis-1.4/rredis/man/redisZRangeByScore.Rd | 22 +++--
rredis-1.4/rredis/man/redisZRank.Rd | 25 +++---
rredis-1.4/rredis/man/redisZRem.Rd | 16 +---
rredis-1.4/rredis/man/redisZScore.Rd | 19 +---
rredis-1.4/rredis/man/redisZUnionStore.Rd |only
rredis-1.4/rredis/test/basicTest.R | 41 ++++------
rredis-1.4/rredis/test/endTest.R |only
rredis-1.4/rredis/test/runTest.R | 2
rredis-1.4/rredis/test/zsetTest.R |only
30 files changed, 235 insertions(+), 183 deletions(-)
Title: Bindings for the Geospatial Data Abstraction Library
Diff between rgdal versions 0.6-27 dated 2010-05-16 and 0.6-28 dated 2010-07-24
Description: Provides bindings to Frank Warmerdam's Geospatial Data
Abstraction Library (GDAL) (>= 1.3.1) and access to
projection/transformation operations from the PROJ.4 library.
The GDAL and PROJ.4 libraries are external to the package, and,
when installing the package from source, must be correctly
installed first. Both GDAL raster and OGR vector map data can
be imported into R, and GDAL raster data and OGR vector data
exported. Use is made of classes defined in the sp package.
rgdal binaries for Win64 and OSX are available from the CRAN
(extras) repository.
Author: Timothy H. Keitt
Maintainer: Roger Bivand
ChangeLog | 14 ++++++++++++++
DESCRIPTION | 8 ++++----
INDEX | 3 ++-
R/ogr_write.R | 2 +-
R/project.R | 10 ++++++----
inst/ChangeLog | 14 ++++++++++++++
man/spTransform-methods.Rd | 9 ++++++---
man/writeOGR.Rd | 2 +-
8 files changed, 48 insertions(+), 14 deletions(-)
Title: Fusing R and OpenBugs
Diff between rbugs versions 0.4-3 dated 2010-06-18 and 0.4-4 dated 2010-07-24
Description: Functions to prepare files needed for running BUGS in
batch-mode, and running BUGS from R. Support for Linux and
Windows systems with OpenBugs is emphasized.
Author: Jun Yan
Maintainer: Marcos Prates
ChangeLog | 6
DESCRIPTION | 8
R/genOpenBugsScript.R | 223 +++++++++---------
R/rbugs.R | 532 +++++++++++++++++++++----------------------
inst/OpenBUGS/Script.txt | 580 +++++++++++++++++++++++------------------------
man/pumps.Rd | 6
man/schools.Rd | 12
7 files changed, 688 insertions(+), 679 deletions(-)
Title: Graphical user interface for data mining in R
Diff between rattle versions 2.5.35 dated 2010-07-01 and 2.5.36 dated 2010-07-24
Description: Rattle (the R Analytic Tool To Learn Easily) provides a
Gnome (RGtk2) based interface to R functionality for data
mining. The aim is to provide a simple and intuitive interface
that allows a user to quickly load data from a CSV file (or via
ODBC), transform and explore the data, build and evaluate
models, and export models as PMML (predictive modelling markup
language) or as scores. All of this with knowing little about
R. All R commands are logged and commented through the log tab.
Thus they are available to the user as a script file or as an
aide for the user to learn R or to copy-and-paste directly into
R itself. Rattle also exports a number of utility functions and
the graphical user interface, invoked as rattle(), does not
need to be run to deploy these.
Author: Graham Williams
Maintainer: Graham Williams
DESCRIPTION | 8 ++--
NAMESPACE | 1
R/data.R | 5 +-
R/evaluate.R | 10 ++++-
R/help.R | 12 ++++++-
R/rattle.R | 63 +++++++++++++++++++++++++++++++++++--
data/weatherAUS.RData |binary
inst/ChangeLog | 13 +++++++
inst/doc/rattle.pdf |binary
inst/etc/rattle.glade | 8 ++++
inst/po/de/LC_MESSAGES/R-rattle.mo |binary
inst/po/es/LC_MESSAGES/R-rattle.mo |binary
inst/po/fr/LC_MESSAGES/R-rattle.mo |binary
inst/po/ja/LC_MESSAGES/R-rattle.mo |binary
man/cranSearch.Rd |only
man/internal.Rd | 1
16 files changed, 108 insertions(+), 13 deletions(-)
Title: Geographic analysis and modeling with raster data
Diff between raster versions 1.2-6 dated 2010-06-24 and 1.3-1 dated 2010-07-24
Description: Package for reading, writing, and manipulating raster
(grid) type geographic (spatial) data
Author: Robert J. Hijmans & Jacob van Etten
Maintainer: Robert J. Hijmans
raster-1.2-6/raster/R/aggregate.R |only
raster-1.3-1/raster/DESCRIPTION | 10 -
raster-1.3-1/raster/R/AAAClasses.R | 51 ++++++--
raster-1.3-1/raster/R/addLayer.R | 17 +-
raster-1.3-1/raster/R/aggregateLayer.R |only
raster-1.3-1/raster/R/aggregateStackBrick.R |only
raster-1.3-1/raster/R/brick.R | 10 +
raster-1.3-1/raster/R/calc.R | 4
raster-1.3-1/raster/R/cellStats.R | 2
raster-1.3-1/raster/R/clearValues.R | 17 +-
raster-1.3-1/raster/R/coercion.R | 2
raster-1.3-1/raster/R/compareCRS.R |only
raster-1.3-1/raster/R/crop.R | 2
raster-1.3-1/raster/R/crosstab.R | 2
raster-1.3-1/raster/R/dataProperties.R | 37 +++++-
raster-1.3-1/raster/R/disaggregate.R | 2
raster-1.3-1/raster/R/doubleIndex.R | 6 -
raster-1.3-1/raster/R/doubleIndexMultLayer.R | 2
raster-1.3-1/raster/R/dropLayer.R | 4
raster-1.3-1/raster/R/focal.R | 4
raster-1.3-1/raster/R/focalFilter.R | 4
raster-1.3-1/raster/R/getValues.R | 8 -
raster-1.3-1/raster/R/getValuesBlock.R | 29 ++---
raster-1.3-1/raster/R/getValuesRows.R | 21 +--
raster-1.3-1/raster/R/gridDistance.R | 4
raster-1.3-1/raster/R/hist.R | 4
raster-1.3-1/raster/R/interpolate.R | 8 -
raster-1.3-1/raster/R/layerNames.R | 8 +
raster-1.3-1/raster/R/levelplot.R | 4
raster-1.3-1/raster/R/makeRasterList.R | 2
raster-1.3-1/raster/R/mask.R | 50 ++------
raster-1.3-1/raster/R/merge.R | 154 ++++++++++++++++-----------
raster-1.3-1/raster/R/mosaic.R | 4
raster-1.3-1/raster/R/netCDFread.R | 6 -
raster-1.3-1/raster/R/netCDFreadCells.R | 6 -
raster-1.3-1/raster/R/netCDFtoRasterCD.R | 11 +
raster-1.3-1/raster/R/netCDFtoRasterRST.R | 4
raster-1.3-1/raster/R/netCDFtoStack.R | 5
raster-1.3-1/raster/R/netCDFwriteCD.R | 3
raster-1.3-1/raster/R/overlayList.R | 2
raster-1.3-1/raster/R/plotRGB.R | 14 ++
raster-1.3-1/raster/R/plotRaster.R | 4
raster-1.3-1/raster/R/predict.R | 8 -
raster-1.3-1/raster/R/projectRaster.R | 4
raster-1.3-1/raster/R/raster.R | 4
raster-1.3-1/raster/R/rasterFromASCII.R | 3
raster-1.3-1/raster/R/rasterFromBIL.R | 3
raster-1.3-1/raster/R/rasterFromGDAL.R | 3
raster-1.3-1/raster/R/rasterFromIDRISI.R | 3
raster-1.3-1/raster/R/rasterFromRasterFile.R | 3
raster-1.3-1/raster/R/rasterFromSAGA.R | 3
raster-1.3-1/raster/R/rasterFromSurferFile.R | 3
raster-1.3-1/raster/R/rasterFromXYZ.R |only
raster-1.3-1/raster/R/rasterToPoints.R | 2
raster-1.3-1/raster/R/rasterToPolygons.R | 4
raster-1.3-1/raster/R/read.R | 14 +-
raster-1.3-1/raster/R/readCells.R | 4
raster-1.3-1/raster/R/replacement.R | 7 -
raster-1.3-1/raster/R/rotate.R | 2
raster-1.3-1/raster/R/sampleInt.R | 56 ++++++---
raster-1.3-1/raster/R/sampleRandom.R | 4
raster-1.3-1/raster/R/sampleRegular.R | 2
raster-1.3-1/raster/R/setExtent.R | 7 -
raster-1.3-1/raster/R/setMinMax.R | 17 +-
raster-1.3-1/raster/R/setValues.R | 15 +-
raster-1.3-1/raster/R/show.R | 16 +-
raster-1.3-1/raster/R/singleIndex.R | 10 -
raster-1.3-1/raster/R/stack.R | 13 +-
raster-1.3-1/raster/R/summary.R | 20 +--
raster-1.3-1/raster/R/unique.R | 7 -
raster-1.3-1/raster/R/values.R | 6 -
raster-1.3-1/raster/R/worldFile.R | 2
raster-1.3-1/raster/R/write.R | 3
raster-1.3-1/raster/R/writeAsciiBlock.R | 6 -
raster-1.3-1/raster/R/writeBrick.R | 2
raster-1.3-1/raster/R/writeGDALrow.R | 4
raster-1.3-1/raster/R/writeHdrBIL.R | 4
raster-1.3-1/raster/R/writeHdrIDRISI.R | 8 -
raster-1.3-1/raster/R/writeHdrRaster.R | 8 -
raster-1.3-1/raster/R/writeHdrSAGA.R | 4
raster-1.3-1/raster/R/writeRaster.R | 15 +-
raster-1.3-1/raster/R/writeRasterSparse.R | 2
raster-1.3-1/raster/R/xyValues.R | 26 ++--
raster-1.3-1/raster/R/xyValuesBuffer.R | 29 ++---
raster-1.3-1/raster/inst/doc/Raster.pdf |binary
raster-1.3-1/raster/inst/doc/functions.pdf |binary
raster-1.3-1/raster/inst/doc/rasterfile.pdf |binary
raster-1.3-1/raster/man/aggregate.Rd | 5
raster-1.3-1/raster/man/brick.Rd | 2
raster-1.3-1/raster/man/dataContent.Rd | 51 ++++----
raster-1.3-1/raster/man/interpolate.Rd | 10 +
raster-1.3-1/raster/man/mask.Rd | 3
raster-1.3-1/raster/man/merge.Rd | 22 +--
raster-1.3-1/raster/man/polygonValues.Rd | 2
raster-1.3-1/raster/man/predict.Rd | 3
raster-1.3-1/raster/man/properties.Rd | 3
raster-1.3-1/raster/man/raster-package.Rd | 21 +--
raster-1.3-1/raster/man/raster.Rd | 8 -
raster-1.3-1/raster/man/rasterFromXYZ.Rd |only
raster-1.3-1/raster/man/rotate.Rd | 8 -
raster-1.3-1/raster/man/sampleInt.Rd | 11 +
raster-1.3-1/raster/man/xyValues.Rd | 3
102 files changed, 582 insertions(+), 453 deletions(-)
Title: R code for Stock Synthesis
Diff between r4ss versions 1.06 dated 2010-05-16 and 1.07 dated 2010-07-24
Description: Functions for reading output, plotting, exploring and
manipulating input files for Richard Methot's Stock Synthesis
fisheries stock assessment modeling platform.
Author: Ian Taylor, Ian Stewart, Tommy Garrison, Andre Punt, John
Wallace, and other contributors
Maintainer: Ian Taylor
r4ss-1.06/r4ss/R/SSv3_FishGraph.R |only
r4ss-1.06/r4ss/R/SSv3_plotpars.R |only
r4ss-1.06/r4ss/man/SSv3_FishGraph.Rd |only
r4ss-1.06/r4ss/man/SSv3_plotpars.Rd |only
r4ss-1.07/r4ss/DESCRIPTION | 8 -
r4ss-1.07/r4ss/R/SSFishGraph.R |only
r4ss-1.07/r4ss/R/SS_changepars.R | 30 +++-
r4ss-1.07/r4ss/R/SS_fitbiasramp.R | 44 +++---
r4ss-1.07/r4ss/R/SS_output.R |only
r4ss-1.07/r4ss/R/SS_plots.R |only
r4ss-1.07/r4ss/R/SS_profile.R | 2
r4ss-1.07/r4ss/R/SSgetoutput.R | 9 -
r4ss-1.07/r4ss/R/SSmakesims.R |only
r4ss-1.07/r4ss/R/SSplotBiology.R |only
r4ss-1.07/r4ss/R/SSplotCatch.R |only
r4ss-1.07/r4ss/R/SSplotComps.R |only
r4ss-1.07/r4ss/R/SSplotDiscard.R |only
r4ss-1.07/r4ss/R/SSplotIndices.R |only
r4ss-1.07/r4ss/R/SSplotMnwt.R |only
r4ss-1.07/r4ss/R/SSplotNumbers.R |only
r4ss-1.07/r4ss/R/SSplotRecdevs.R |only
r4ss-1.07/r4ss/R/SSplotSPR.R |only
r4ss-1.07/r4ss/R/SSplotSelex.R |only
r4ss-1.07/r4ss/R/SSplotSpawnrecruit.R |only
r4ss-1.07/r4ss/R/SSplotTags.R |only
r4ss-1.07/r4ss/R/SSplotTimeseries.R |only
r4ss-1.07/r4ss/R/SSplotYield.R |only
r4ss-1.07/r4ss/R/SSplotpars.R |only
r4ss-1.07/r4ss/R/SSrunsims.R | 177 ++++++++++++++++++---------
r4ss-1.07/r4ss/R/SSsummarize.R | 19 ++
r4ss-1.07/r4ss/R/SSv3_output.R | 197 ++++++++++++++++++-------------
r4ss-1.07/r4ss/R/SSv3_plots.R | 45 ++++++-
r4ss-1.07/r4ss/R/bubble3.R |only
r4ss-1.07/r4ss/R/make_multifig.R |only
r4ss-1.07/r4ss/R/mountains.R |only
r4ss-1.07/r4ss/R/plotCI.R |only
r4ss-1.07/r4ss/R/rich.colors.short.R |only
r4ss-1.07/r4ss/R/sel.line.R | 168 +++++++++++++-------------
r4ss-1.07/r4ss/R/stackpoly.R |only
r4ss-1.07/r4ss/R/update_r4ss_files.R | 8 -
r4ss-1.07/r4ss/man/SSFishGraph.Rd |only
r4ss-1.07/r4ss/man/SS_changepars.Rd | 14 +-
r4ss-1.07/r4ss/man/SS_fitbiasramp.Rd | 17 +-
r4ss-1.07/r4ss/man/SS_output.Rd |only
r4ss-1.07/r4ss/man/SS_plots.Rd |only
r4ss-1.07/r4ss/man/SSgetoutput.Rd | 6
r4ss-1.07/r4ss/man/SSmakesims.Rd |only
r4ss-1.07/r4ss/man/SSplotBiology.Rd |only
r4ss-1.07/r4ss/man/SSplotCatch.Rd |only
r4ss-1.07/r4ss/man/SSplotComps.Rd |only
r4ss-1.07/r4ss/man/SSplotDiscard.Rd |only
r4ss-1.07/r4ss/man/SSplotIndices.Rd |only
r4ss-1.07/r4ss/man/SSplotMnwt.Rd |only
r4ss-1.07/r4ss/man/SSplotNumbers.Rd |only
r4ss-1.07/r4ss/man/SSplotPars.Rd |only
r4ss-1.07/r4ss/man/SSplotRecdevs.Rd |only
r4ss-1.07/r4ss/man/SSplotSPR.Rd |only
r4ss-1.07/r4ss/man/SSplotSelex.Rd |only
r4ss-1.07/r4ss/man/SSplotSpawnrecruit.Rd |only
r4ss-1.07/r4ss/man/SSplotTags.Rd |only
r4ss-1.07/r4ss/man/SSplotTimeseries.Rd |only
r4ss-1.07/r4ss/man/SSplotYield.Rd |only
r4ss-1.07/r4ss/man/SSrunsims.Rd | 13 +-
r4ss-1.07/r4ss/man/SSsummarize.Rd | 9 +
r4ss-1.07/r4ss/man/SSv3_output.Rd | 28 ++--
r4ss-1.07/r4ss/man/bubble3.Rd |only
r4ss-1.07/r4ss/man/make_multifig.Rd |only
r4ss-1.07/r4ss/man/mountains.Rd |only
r4ss-1.07/r4ss/man/plotCI.Rd |only
r4ss-1.07/r4ss/man/r4ss-package.Rd | 15 +-
r4ss-1.07/r4ss/man/rich.colors.short.Rd |only
r4ss-1.07/r4ss/man/stackpoly.Rd |only
72 files changed, 496 insertions(+), 313 deletions(-)
Title: Procedures for Psychological, Psychometric, and Personality
Research
Diff between psych versions 1.0-89 dated 2010-06-28 and 1.0-90 dated 2010-07-24
Description: A number of routines for personality, psychometrics and
experimental psychology. Functions are primarily for scale
construction using factor analysis, cluster analysis and
reliability analysis, although others provide basic descriptive
statistics. Functions for simulating particular item and test
structures are included. Several functions serve as a useful
front end for structural equation modeling. Graphical displays
of path diagrams, factor analysis and structural equation
models are created using basic graphics. Some of the functions
are written to support a book on psychometrics as well as
publications in personality research. For more information, see
the personality-project.org/r webpage.
Author: William Revelle
Maintainer: William Revelle
DESCRIPTION | 8 ++++----
NAMESPACE | 1 +
NEWS | 2 +-
R/ICLUST.R | 2 +-
R/ICLUST.cluster.R | 2 +-
R/VSS.scree.R | 9 ++++++---
R/cor.plot.R | 4 +++-
R/error.bars.by.R | 13 ++++++++-----
R/fa.R | 7 +++++--
R/fa.diagram.R | 10 ++++++----
R/fa.parallel.R | 8 ++++----
R/fa.sort.R | 37 ++++++++++++++++++-------------------
R/factor.stats.R | 11 ++++++-----
R/factor2cluster.R | 2 +-
R/omega.R | 4 ++--
R/omega.diagram.R | 26 ++++++++++++--------------
R/principal.R | 2 +-
R/print.psych.fa.R | 2 +-
R/print.psych.omega.R | 18 ++++--------------
R/schmid.R | 20 +++++++++++++-------
R/sim.structural.R | 43 ++++++++++++++++++++++++++++++++++++++-----
R/target.rot.R | 3 ++-
inst/CITATION |only
inst/doc/overview.pdf |binary
inst/doc/psych_for_sem.pdf |binary
man/00.psych-package.Rd | 4 ++--
man/Promax.Rd | 4 ++--
man/VSS.scree.Rd | 3 ++-
man/cor.plot.Rd | 3 ++-
man/error.bars.by.Rd | 3 ++-
man/fa.Rd | 4 +++-
man/fa.diagram.Rd | 16 ++++++++++++----
man/fa.parallel.Rd | 4 +++-
man/omega.Rd | 6 +++---
man/omega.graph.Rd | 7 ++++---
man/sim.Rd | 13 +++++++++++--
36 files changed, 184 insertions(+), 117 deletions(-)
Title: Tools for splitting, applying and combining data
Diff between plyr versions 1.0.3 dated 2010-07-07 and 1.1 dated 2010-07-24
Description: plyr is a set of tools that solves a common set of
problems: you need to break a big problem down into manageable
pieces, operate on each pieces and then put all the pieces back
together. For example, you might want to fit a model to each
spatial location or time point in your study, summarise data by
panels or collapse high-dimensional arrays to simpler summary
statistics.
Author: Hadley Wickham
Maintainer: Hadley Wickham
plyr-1.0.3/plyr/inst/doc |only
plyr-1.1/plyr/DESCRIPTION | 19 ++++++++++---------
plyr-1.1/plyr/NAMESPACE | 2 ++
plyr-1.1/plyr/NEWS | 6 ++++++
plyr-1.1/plyr/R/indexed.r | 11 ++++++++---
plyr-1.1/plyr/R/join.r | 21 +++++++++++++++++++--
plyr-1.1/plyr/R/ply-iterator.r |only
plyr-1.1/plyr/R/simplify-array.r | 4 ++--
plyr-1.1/plyr/R/simplify-data-frame.r | 26 ++++++++++++++++----------
plyr-1.1/plyr/R/split-array.r | 5 +++++
plyr-1.1/plyr/inst/tests/test-array.r | 20 +++++++++++++++-----
plyr-1.1/plyr/inst/tests/test-empty.r | 14 ++++++++++++++
plyr-1.1/plyr/inst/tests/test-join.r | 12 ++++++++++++
plyr-1.1/plyr/inst/tests/test-list.r |only
plyr-1.1/plyr/man/isplit2.Rd |only
plyr-1.1/plyr/man/join.Rd | 9 ++++++++-
plyr-1.1/plyr/man/liply.Rd |only
plyr-1.1/plyr/man/list_to_dataframe.Rd | 3 ++-
plyr-1.1/plyr/tests |only
19 files changed, 119 insertions(+), 33 deletions(-)
Title: Partial Least Squares Data Analysis Methods
Diff between plspm versions 0.1-6 dated 2010-06-29 and 0.1-7 dated 2010-07-24
Description: Partial Least Squares (PLS) methods with emphasis on
structural equation models with latent variables.
Author: Gaston Sanchez
Maintainer: Gaston Sanchez
DESCRIPTION | 8 +-
R/plspm-internal.R | 151 ++++++++++++++++++++++++++-------------------------
man/plspm-package.Rd | 4 -
3 files changed, 83 insertions(+), 80 deletions(-)
Title: Linear Models for Panel Data
Diff between plm versions 1.2-4 dated 2010-04-16 and 1.2-5 dated 2010-07-24
Description: A set of estimators and tests for panel data.
Author: Yves Croissant
Maintainer: Yves Croissant
DESCRIPTION | 16
NAMESPACE | 4
R/attributes.R | 2
R/ercomp.R | 1
R/fixef.R | 1
R/pFormula.R | 37
R/pcdtest.R | 2
R/pfunctions.R | 3
R/pgmm.R | 2
R/pht.R | 4
R/plm.R | 3
R/plm.methods.R | 134 -
R/pserial.R | 16
R/ptest.R | 1
changelog | 16
inst/doc/plm.pdf | 5399 ++++++++++++++++++++++++-------------------------
inst/doc/plm.rnw | 22
man/pmodel.response.Rd | 7
man/r.squared.Rd |only
19 files changed, 2857 insertions(+), 2813 deletions(-)
Title: R tools for integrating phylogenies and ecology
Diff between picante versions 1.1-1 dated 2010-05-22 and 1.2-0 dated 2010-07-24
Description: Phylocom integration, community analyses, null-models,
traits and evolution in R
Author: Steven W. Kembel
Maintainer: Steven W. Kembel
DESCRIPTION | 8 ++++----
R/evol.distinct.R | 24 +++++++++++++-----------
R/phylosignal.R | 42 +++++++++++++++++++++---------------------
inst/CITATION | 6 ++++--
inst/doc/picante-intro.pdf |binary
man/picante-package.Rd | 4 ++--
6 files changed, 44 insertions(+), 40 deletions(-)
Title: Base package for phylogenetic structures and comparative data
Diff between phylobase versions 0.5 dated 2009-11-01 and 0.6.0 dated 2010-07-24
Description: Provides a base S4 class for comparative methods,
incorporating one or more trees and trait data
Author: R Hackathon et al. (alphabetically: Ben Bolker, Marguerite
Butler, Peter Cowan, Damien de Vienne, Dirk Eddelbuettel, Mark
Holder, Thibaut Jombart, Steve Kembel, Francois Michonneau,
David Orme, Brian O'Meara, Emmanuel Paradis, Jim Regetz,
Derrick Zwickl)
Maintainer: Ben Bolker
phylobase-0.5/phylobase/configure |only
phylobase-0.5/phylobase/configure.in |only
phylobase-0.5/phylobase/configure.win |only
phylobase-0.5/phylobase/inst/nexusfiles/treepluscharV01.nex |only
phylobase-0.5/phylobase/inst/unitTests/runit.labelsReplaceMethod.R |only
phylobase-0.5/phylobase/man/read.nexustreestring.Rd |only
phylobase-0.5/phylobase/src/Makevars.in |only
phylobase-0.5/phylobase/src/NCLInterface.cpp |only
phylobase-0.5/phylobase/src/NCLInterface.h |only
phylobase-0.5/phylobase/src/RcppSrc |only
phylobase-0.5/phylobase/src/ReadWithNCL.cpp |only
phylobase-0.5/phylobase/src/ncl/AUTHORS |only
phylobase-0.5/phylobase/src/ncl/COPYING |only
phylobase-0.5/phylobase/src/ncl/ChangeLog |only
phylobase-0.5/phylobase/src/ncl/INSTALL |only
phylobase-0.5/phylobase/src/ncl/Makefile.am |only
phylobase-0.5/phylobase/src/ncl/Makefile.in |only
phylobase-0.5/phylobase/src/ncl/NEWS |only
phylobase-0.5/phylobase/src/ncl/README |only
phylobase-0.5/phylobase/src/ncl/aclocal.m4 |only
phylobase-0.5/phylobase/src/ncl/bootstrap.sh |only
phylobase-0.5/phylobase/src/ncl/config |only
phylobase-0.5/phylobase/src/ncl/config.h |only
phylobase-0.5/phylobase/src/ncl/config.h.in |only
phylobase-0.5/phylobase/src/ncl/config.log |only
phylobase-0.5/phylobase/src/ncl/config.status |only
phylobase-0.5/phylobase/src/ncl/configure |only
phylobase-0.5/phylobase/src/ncl/configure.ac |only
phylobase-0.5/phylobase/src/ncl/data |only
phylobase-0.5/phylobase/src/ncl/ncl |only
phylobase-0.5/phylobase/tests/dUnit.Rout.save |only
phylobase-0.5/phylobase/tests/nexusdata.Rout |only
phylobase-0.5/phylobase/tests/plottestUnit-tests.Rout.save |only
phylobase-0.6.0/phylobase/DESCRIPTION | 23
phylobase-0.6.0/phylobase/NAMESPACE | 10
phylobase-0.6.0/phylobase/NEWS | 59 +
phylobase-0.6.0/phylobase/R/checkdata.R | 198 ++--
phylobase-0.6.0/phylobase/R/class-phylo4.R | 2
phylobase-0.6.0/phylobase/R/class-phylo4d.R | 9
phylobase-0.6.0/phylobase/R/formatData.R | 58 +
phylobase-0.6.0/phylobase/R/methods-phylo4.R | 15
phylobase-0.6.0/phylobase/R/methods-phylo4d.R | 5
phylobase-0.6.0/phylobase/R/phylo4.R | 11
phylobase-0.6.0/phylobase/R/phylobase.options.R |only
phylobase-0.6.0/phylobase/R/readNCL.R |only
phylobase-0.6.0/phylobase/R/readNexus.R | 260 ------
phylobase-0.6.0/phylobase/R/setAs-Methods.R | 2
phylobase-0.6.0/phylobase/R/treePlot.R | 246 +++--
phylobase-0.6.0/phylobase/R/treewalk.R | 7
phylobase-0.6.0/phylobase/R/zzz.R | 15
phylobase-0.6.0/phylobase/cleanup | 55 +
phylobase-0.6.0/phylobase/inst/doc/developer.Rnw | 98 ++
phylobase-0.6.0/phylobase/inst/doc/developer.pdf |binary
phylobase-0.6.0/phylobase/inst/doc/phylobase.Rnw | 59 -
phylobase-0.6.0/phylobase/inst/doc/phylobase.pdf |binary
phylobase-0.6.0/phylobase/inst/nexusfiles/ExContData.Rdata |only
phylobase-0.6.0/phylobase/inst/nexusfiles/multiLines.Rdata |only
phylobase-0.6.0/phylobase/inst/nexusfiles/treeRoundingError.nex |only
phylobase-0.6.0/phylobase/inst/nexusfiles/treeWithContinuousData.nex |only
phylobase-0.6.0/phylobase/inst/nexusfiles/treeWithDiscAndContData.nex |only
phylobase-0.6.0/phylobase/inst/nexusfiles/treeWithDiscreteData.nex |only
phylobase-0.6.0/phylobase/inst/nexusfiles/treeWithPolyExcludedData.nex |only
phylobase-0.6.0/phylobase/inst/unitTests/runit.checkdata.R | 51 +
phylobase-0.6.0/phylobase/inst/unitTests/runit.class-phylo4.R | 21
phylobase-0.6.0/phylobase/inst/unitTests/runit.class-phylo4d.R | 18
phylobase-0.6.0/phylobase/inst/unitTests/runit.formatData.R | 223 +++++
phylobase-0.6.0/phylobase/inst/unitTests/runit.methods-phylo4.R | 24
phylobase-0.6.0/phylobase/inst/unitTests/runit.methods-phylo4d.R | 5
phylobase-0.6.0/phylobase/inst/unitTests/runit.phylobase.options.R |only
phylobase-0.6.0/phylobase/inst/unitTests/runit.readNexus.R | 412 +++++++++-
phylobase-0.6.0/phylobase/man/check.phylo4.Rd | 23
phylobase-0.6.0/phylobase/man/phylo4-labels.Rd | 8
phylobase-0.6.0/phylobase/man/phylo4d-nData.Rd |only
phylobase-0.6.0/phylobase/man/phylobase.options.Rd |only
phylobase-0.6.0/phylobase/man/readNexus.Rd | 59 -
phylobase-0.6.0/phylobase/man/subset-methods.Rd | 2
phylobase-0.6.0/phylobase/man/tdata.Rd | 2
phylobase-0.6.0/phylobase/man/treePlot-methods.Rd | 2
phylobase-0.6.0/phylobase/src/GetNCL.cpp |only
phylobase-0.6.0/phylobase/src/Makevars |only
phylobase-0.6.0/phylobase/src/Makevars.win | 6
phylobase-0.6.0/phylobase/src/ncl/ncl.h |only
phylobase-0.6.0/phylobase/src/ncl/nxsallocatematrix.h |only
phylobase-0.6.0/phylobase/src/ncl/nxsassumptionsblock.h |only
phylobase-0.6.0/phylobase/src/ncl/nxsblock.h |only
phylobase-0.6.0/phylobase/src/ncl/nxscdiscretematrix.h |only
phylobase-0.6.0/phylobase/src/ncl/nxscharactersblock.h |only
phylobase-0.6.0/phylobase/src/ncl/nxscxxdiscretematrix.h |only
phylobase-0.6.0/phylobase/src/ncl/nxsdatablock.h |only
phylobase-0.6.0/phylobase/src/ncl/nxsdefs.h |only
phylobase-0.6.0/phylobase/src/ncl/nxsdiscretedatum.h |only
phylobase-0.6.0/phylobase/src/ncl/nxsdistancedatum.h |only
phylobase-0.6.0/phylobase/src/ncl/nxsdistancesblock.h |only
phylobase-0.6.0/phylobase/src/ncl/nxsemptyblock.h |only
phylobase-0.6.0/phylobase/src/ncl/nxsexception.h |only
phylobase-0.6.0/phylobase/src/ncl/nxsmultiformat.h |only
phylobase-0.6.0/phylobase/src/ncl/nxspublicblocks.h |only
phylobase-0.6.0/phylobase/src/ncl/nxsreader.h |only
phylobase-0.6.0/phylobase/src/ncl/nxssetreader.h |only
phylobase-0.6.0/phylobase/src/ncl/nxsstring.h |only
phylobase-0.6.0/phylobase/src/ncl/nxstaxablock.h |only
phylobase-0.6.0/phylobase/src/ncl/nxstoken.h |only
phylobase-0.6.0/phylobase/src/ncl/nxstreesblock.h |only
phylobase-0.6.0/phylobase/src/ncl/nxsunalignedblock.h |only
phylobase-0.6.0/phylobase/src/ncl/nxsutilcopy.h |only
phylobase-0.6.0/phylobase/src/nxsassumptionsblock.cpp |only
phylobase-0.6.0/phylobase/src/nxsblock.cpp |only
phylobase-0.6.0/phylobase/src/nxscharactersblock.cpp |only
phylobase-0.6.0/phylobase/src/nxscxxdiscretematrix.cpp |only
phylobase-0.6.0/phylobase/src/nxsdatablock.cpp |only
phylobase-0.6.0/phylobase/src/nxsdistancedatum.cpp |only
phylobase-0.6.0/phylobase/src/nxsdistancesblock.cpp |only
phylobase-0.6.0/phylobase/src/nxsemptyblock.cpp |only
phylobase-0.6.0/phylobase/src/nxsexception.cpp |only
phylobase-0.6.0/phylobase/src/nxsmultiformat.cpp |only
phylobase-0.6.0/phylobase/src/nxspublicblocks.cpp |only
phylobase-0.6.0/phylobase/src/nxsreader.cpp |only
phylobase-0.6.0/phylobase/src/nxssetreader.cpp |only
phylobase-0.6.0/phylobase/src/nxsstring.cpp |only
phylobase-0.6.0/phylobase/src/nxstaxablock.cpp |only
phylobase-0.6.0/phylobase/src/nxstoken.cpp |only
phylobase-0.6.0/phylobase/src/nxstreesblock.cpp |only
phylobase-0.6.0/phylobase/src/nxsunalignedblock.cpp |only
phylobase-0.6.0/phylobase/src/phyloXX.c | 4
phylobase-0.6.0/phylobase/tests/RUnit-tests.Rout.save |only
phylobase-0.6.0/phylobase/tests/doRUnit.Rout.save |only
phylobase-0.6.0/phylobase/tests/misctests.Rout.save | 14
phylobase-0.6.0/phylobase/tests/nexusdata.Rout.save | 5
phylobase-0.6.0/phylobase/tests/phylo4dtests.Rout.save | 24
phylobase-0.6.0/phylobase/tests/phylosubtest.Rout.save |only
phylobase-0.6.0/phylobase/tests/phylotorture.Rout.save | 38
phylobase-0.6.0/phylobase/tests/plottest.Rout.save |only
phylobase-0.6.0/phylobase/tests/roundtrip.R | 6
phylobase-0.6.0/phylobase/tests/roundtrip.Rout.save |only
phylobase-0.6.0/phylobase/tests/testprune.Rout.save | 13
135 files changed, 1457 insertions(+), 635 deletions(-)
Title: Data analysis in ecology
Diff between pgirmess versions 1.4.6 dated 2010-06-27 and 1.4.7 dated 2010-07-24
Description: Miscellaneous functions for analysis and display of
ecological and spatial data
Author: Patrick Giraudoux
Maintainer: Patrick Giraudoux
DESCRIPTION | 8 ++++----
R/readGDALbbox.r | 4 ++--
R/rwhatbufCat.r | 15 +++++++++++----
R/rwhatbufNum.r | 19 ++++++++++++++-----
4 files changed, 31 insertions(+), 15 deletions(-)
Title: Robust PCA by Projection Pursuit
Diff between pcaPP versions 1.8-1 dated 2010-04-15 and 1.8-2 dated 2010-07-24
Description: Robust PCA by Projection Pursuit
Author: Peter Filzmoser Heinrich Fritz Klaudius Kalcher
Maintainer: Peter Filzmoser
DESCRIPTION | 6 +++---
man/Qn.Rd | 4 ++++
src/qnn.cpp | 3 ++-
3 files changed, 9 insertions(+), 4 deletions(-)
Title: Principal Axes Methods for Contingency Tables with Partition
Structures on Rows and Columns
Diff between pamctdp versions 0.1.3 dated 2010-02-16 and 0.1.5 dated 2010-07-24
Description: Correspondence Analysis of Contingency Tables with Simple
and Double Structures Superimposed Representations, Intra
Blocks Internal Corresponde Analysis, MFACT-DP.
Author: Campo Elias Pardo
Maintainer: Campo Elias Pardo
DESCRIPTION | 8 +++----
R/partial.wwm.R | 48 ++++++++++--------------------------------
R/plot.parwwm.R | 56 +++++++++++++++++++++++++++++---------------------
bitacora.txt |only
data/mores.rda |binary
data/mores5.rda |binary
data/multilingual.rda |binary
7 files changed, 49 insertions(+), 63 deletions(-)
Title: Regression Models for Ordinal Data
Diff between ordinal versions 2010.06-12 dated 2010-06-13 and 2010.07-06 dated 2010-07-24
Description: This package implements likelihood based models for
ordinal (ordered categorical) data based on cumulative
probabilities in the framework of cumulative link (mixed)
models. This includes the important proportional odds model but
also allows for general regression structures for location as
well as scale of the latent distribution, i.e. additive as well
as multiplicative structures, structured thresholds
(cut-points), nominal effects, flexible link functions and
random effects. Further, a range of estimation procedures and a
range of auxiliary functions are implemented.
Author: Rune Haubo B Christensen
Maintainer: Rune Haubo B Christensen
DESCRIPTION | 10
NAMESPACE | 84 -
NEWS | 110 -
R/clm.R | 3573 +++++++++++++++++++++++++-------------------------
R/clmm.R | 1742 ++++++++++++------------
R/miscFuns.R | 806 +++++------
data/soup.rda |binary
inst/CITATION | 36
inst/LICENCE | 52
man/addterm.Rd | 192 +-
man/anova.Rd | 142 -
man/clm.Rd | 702 ++++-----
man/clm.control.Rd | 100 -
man/clmm.Rd | 562 +++----
man/clmm.control.Rd | 90 -
man/confint.Rd | 370 ++---
man/confint.clmm.Rd | 264 +--
man/predict.Rd | 165 +-
man/soup.Rd | 156 +-
man/update.Rd | 120 -
tests/confint.clm.R | 134 -
tests/testAnova.clm.R | 86 -
tests/testCLM.R | 376 ++---
tests/testCLMM.R | 292 ++--
tests/testUtils.R | 42
25 files changed, 5115 insertions(+), 5091 deletions(-)
More information about operator.tools at CRAN
Permanent link
Title: Nonparametric kernel smoothing methods for mixed data types
Diff between np versions 0.40-1 dated 2010-06-04 and 0.40-3 dated 2010-07-24
Description: This package provides a variety of nonparametric (and
semiparametric) kernel methods that seamlessly handle a mix of
continuous, unordered, and ordered factor data types. We would
like to gratefully acknowledge support from the Natural
Sciences and Engineering Research Council of Canada
(NSERC:www.nserc.ca), the Social Sciences and Humanities
Research Council of Canada (SSHRC:www.sshrc.ca), and the Shared
Hierarchical Academic Research Computing Network
(SHARCNET:www.sharcnet.ca).
Author: Tristen Hayfield
Maintainer: Jeffrey S. Racine
CHANGELOG | 26
DESCRIPTION | 8
R/np.condensity.R | 2
R/np.condistribution.R | 2
R/np.conmode.R | 2
R/np.density.R | 2
R/np.distribution.R | 2
R/np.plot.R | 12
R/np.plregression.R | 2
R/np.qregression.R | 2
R/np.regression.R | 2
R/np.sigtest.R | 2
R/np.singleindex.R | 85 +-
R/np.smoothcoef.R | 2
R/np.smoothcoef.bw.R | 21
R/zzz.R | 2
inst/doc/entropy_np.bbl |only
inst/doc/entropy_np.blg |only
inst/doc/entropy_np.pdf |binary
inst/doc/np.pdf | 1956 ++++++++++++++++++++++++------------------------
inst/doc/np_faq.pdf |binary
man/np.smoothcoef.bw.Rd | 10
src/jksum.c | 225 ++++-
src/kernelcv.c | 14
src/kernele.c | 37
25 files changed, 1310 insertions(+), 1106 deletions(-)
Title: Analysis of Mark-Recapture data
Diff between mra versions 2.4 dated 2010-02-05 and 2.6 dated 2010-07-24
Description: Analysis of mark-recapture data using covariates. Models:
CJS open population; Huggin's closed population. Link
functions: logit, sine, hazard. Model selection and model
averaging routines. Plot methods. CJS methods produce estimates
of population size using the Horvitz-Thompson estimator.
Author: Trent McDonald
Maintainer: Trent McDonald
DESCRIPTION | 15 +-
R/F.3d.model.matrix.r | 2
R/F.cjs.estim.R | 39 +++++-
R/F.cjs.simulate.r |only
R/F.cr.model.avg.r | 40 +++----
R/F.huggins.estim.R | 3
R/F.step.cjs.r |only
R/plot.cjs.R | 8 -
R/predict.cjs.R | 12 +-
R/print.cjs.R | 3
man/F.cjs.estim.Rd | 77 ++++++++++---
man/F.cjs.simulate.Rd |only
man/F.cr.model.avg.Rd | 8 -
man/F.fit.table.Rd | 8 -
man/F.step.cjs.Rd |only
src/Mrawin.f90 | 285 +++++++++++++++++++++++++++++++++++++-------------
16 files changed, 359 insertions(+), 141 deletions(-)
Title: Keep track of dates in terms of months
Diff between mondate versions 0.9.5.1 dated 2010-07-07 and 0.9.6 dated 2010-07-24
Description: Keep track of dates in month units. Perform date
arithmetic in "months" (default), "years", and "days". Enable
dates to have "shape" (non NULL dim).
Author: Dan Murphy
Maintainer: Dan Murphy
mondate-0.9.5.1/mondate/man/mondAtomic-class.Rd |only
mondate-0.9.5.1/mondate/man/numarray-class.Rd |only
mondate-0.9.6/mondate/DESCRIPTION | 8
mondate-0.9.6/mondate/NAMESPACE | 11
mondate-0.9.6/mondate/R/mondate.r | 305 ++++++++-----
mondate-0.9.6/mondate/man/Arith-methods.Rd | 2
mondate-0.9.6/mondate/man/Coersion.from.mondate-methods.rd | 2
mondate-0.9.6/mondate/man/Summary-methods.rd | 4
mondate-0.9.6/mondate/man/array-methods.Rd | 4
mondate-0.9.6/mondate/man/c-methods.rd | 75 ---
mondate-0.9.6/mondate/man/displayFormat-methods.Rd | 23
mondate-0.9.6/mondate/man/mondate-methods.Rd | 40 +
mondate-0.9.6/mondate/man/seq.mondate.Rd | 2
mondate-0.9.6/mondate/man/timeunits-methods.Rd | 17
mondate-0.9.6/mondate/man/year-methods.Rd | 5
mondate-0.9.6/mondate/man/z[-methods.Rd | 15
mondate-0.9.6/mondate/mondate.test.as.numeric.r |only
17 files changed, 298 insertions(+), 215 deletions(-)
Title: Mokken Scale Analysis in R
Diff between mokken versions 2.3 dated 2010-07-05 and 2.4 dated 2010-07-24
Description: mokken contains functions for performing Mokken scale
analysis on test and questionnaire data. It includes an
automated item selection algorithm, and various checks of model
assumptions.
Author: L. Andries van der Ark
Maintainer: L. Andries van der Ark
mokken-2.3/mokken/inst/doc/mokkenstart.pdf |only
mokken-2.4/mokken/DESCRIPTION | 8 ++++----
mokken-2.4/mokken/R/aisp.R | 2 +-
mokken-2.4/mokken/inst/doc/F1.EPS |only
mokken-2.4/mokken/inst/doc/F1.pdf |only
mokken-2.4/mokken/inst/doc/F2.EPS |only
mokken-2.4/mokken/inst/doc/F2.pdf |only
mokken-2.4/mokken/inst/doc/F3.EPS |only
mokken-2.4/mokken/inst/doc/F3.pdf |only
mokken-2.4/mokken/inst/doc/F4.EPS |only
mokken-2.4/mokken/inst/doc/F4.pdf |only
mokken-2.4/mokken/inst/doc/F7.EPS |only
mokken-2.4/mokken/inst/doc/F7.pdf |only
mokken-2.4/mokken/inst/doc/F8.EPS |only
mokken-2.4/mokken/inst/doc/F8.pdf |only
mokken-2.4/mokken/inst/doc/Rplots.pdf |only
mokken-2.4/mokken/inst/doc/Sweave.sty |only
mokken-2.4/mokken/inst/doc/fancyvrb.sty |only
mokken-2.4/mokken/inst/doc/mokken.Rnw |only
mokken-2.4/mokken/inst/doc/mokken.log |only
mokken-2.4/mokken/inst/doc/mokken.pdf |only
mokken-2.4/mokken/man/aisp.Rd | 2 +-
mokken-2.4/mokken/man/mokken-package.Rd | 6 ++++--
mokken-2.4/mokken/mokken.Rnw |only
24 files changed, 10 insertions(+), 8 deletions(-)
Title: multinomial logit model
Diff between mlogit versions 0.1-7 dated 2010-04-18 and 0.1-8 dated 2010-07-24
Description: Estimation of the multinomial logit model
Author: Yves Croissant
Maintainer: Yves Croissant
mlogit-0.1-7/mlogit/inst |only
mlogit-0.1-8/mlogit/DESCRIPTION | 12
mlogit-0.1-8/mlogit/NAMESPACE | 8
mlogit-0.1-8/mlogit/R/logitform.R | 19 -
mlogit-0.1-8/mlogit/R/mlogit.R | 102 +++--
mlogit-0.1-8/mlogit/R/mlogit.data.R | 67 +--
mlogit-0.1-8/mlogit/R/mlogit.lnl.R | 566 +++++++++++++-------------------
mlogit-0.1-8/mlogit/R/mlogit.rpar.R | 31 +
mlogit-0.1-8/mlogit/R/mlogit.tools.R | 154 +++++---
mlogit-0.1-8/mlogit/changelog | 29 +
mlogit-0.1-8/mlogit/man/ModeCanada.Rd | 5
mlogit-0.1-8/mlogit/man/distribution.Rd | 4
mlogit-0.1-8/mlogit/man/hmftest.Rd | 2
mlogit-0.1-8/mlogit/man/mlogit.Rd | 2
mlogit-0.1-8/mlogit/man/mlogit.data.Rd | 6
mlogit-0.1-8/mlogit/man/mlogit.optim.Rd | 11
mlogit-0.1-8/mlogit/man/rpar.Rd | 3
mlogit-0.1-8/mlogit/tests/greene.R | 2
18 files changed, 517 insertions(+), 506 deletions(-)
Title: Fitting finite mixture of scale mixture of skew-normal
distributions .
Diff between mixsmsn versions 0.2-3 dated 2010-07-03 and 0.2-5 dated 2010-07-24
Description: Functions to fit finite mixture of scale mixture of
skew-normal (FM-SMSN) distributions.
Author: Marcos Prates
Maintainer: Marcos Prates
ChangeLog | 10 +
DESCRIPTION | 8
NAMESPACE | 1
R/smsn.mmix.R | 14 -
R/utils.R | 8
R/utils.multi.R | 515 +++++++++++++++++++++++++++++++++++++++++++++++++++++
man/bmi.Rd | 102 +++++-----
man/faithful.Rd | 13 +
man/im.smsn.Rd | 5
man/imm.smsn.Rd |only
man/mix.contour.Rd | 3
man/mix.hist.Rd | 3
man/rmix.Rd | 3
man/rmmix.Rd | 3
man/smsn.mmix.Rd | 4
man/smsn.search.Rd | 5
16 files changed, 620 insertions(+), 77 deletions(-)
Title: Derivative-free optimization algorithms by quadratic
approximation
Diff between minqa versions 1.1.8 dated 2010-06-19 and 1.1.9 dated 2010-07-24
Description: Derivative-free optimization by quadratic approximation
based on an interface to Fortran implementations by M. J. D.
Powell
Author: Douglas Bates, Katharine M. Mullen, John C. Nash, Ravi Varadhan
Maintainer: Katharine M. Mullen
DESCRIPTION | 8 ++++----
src/Makevars.win | 3 ++-
2 files changed, 6 insertions(+), 5 deletions(-)
Title: Tools for Management of Survey Data, Graphics, Programming,
Statistics, and Simulation
Diff between memisc versions 0.95-30 dated 2010-04-13 and 0.95-31 dated 2010-07-24
Description: One of the aims of this package is to make life easier for
useRs who deal with survey data sets. It provides an
infrastructure for the management of survey data including
value labels, definable missing values, recoding of variables,
production of code books, and import of (subsets of) SPSS and
Stata files. Further, it provides functionality to produce
tables and data frames of arbitrary descriptive statistics and
(almost) publication-ready tables of regression model
estimates. Also some convenience tools for graphics,
programming, and simulation are provided.
Author: Martin Elff
Maintainer: Martin Elff
DESCRIPTION | 8 ++++----
INDEX | 6 +++---
R/simulate.R | 21 +++++++++++----------
inst/NEWS | 4 ++++
inst/doc/anes48.pdf |binary
man/By.Rd | 2 +-
man/simulation.Rd | 6 +++---
7 files changed, 26 insertions(+), 21 deletions(-)
Title: tktcl quick and simple function GUI.
Diff between miniGUI versions 0.2.0 dated 2009-11-18 and 0.7.0 dated 2010-07-24
Description: quick and simple tktcl miniGUI to call functions.
Author: Jorge Luis Ojeda Cabrera
Maintainer: Jorge Luis Ojeda Cabrera
DESCRIPTION | 8 +-
R/miniGUI.R | 143 ++++++++++++++++++++++++++-----------------------
man/mapFuncToWidget.Rd | 7 +-
man/miniGUI.Rd | 4 -
4 files changed, 88 insertions(+), 74 deletions(-)
Title: Model-Based Clustering / Normal Mixture Modeling
Diff between mclust versions 3.4.4 dated 2010-04-08 and 3.4.5 dated 2010-07-24
Description: Model-based clustering and normal mixture modeling
including Bayesian regularization
Author: Chris Fraley and Adrian Raftery
Maintainer: Chris Fraley
CHANGELOG | 1 +
DESCRIPTION | 8 ++++----
R/mclust.R | 31 +++++++++++++++++++++++++++++++
core |only
man/Defaults.Mclust.Rd | 6 +++---
man/Mclust.Rd | 4 ++--
man/bic.Rd | 2 +-
man/bicEMtrain.Rd | 2 +-
man/cdens.Rd | 2 +-
man/cdensE.Rd | 3 +--
man/chevron.Rd | 3 +--
man/clPairs.Rd | 2 +-
man/classError.Rd | 2 +-
man/coordProj.Rd | 2 +-
man/cv1EMtrain.Rd | 2 +-
man/decomp2sigma.Rd | 2 +-
man/defaultPrior.Rd | 8 ++++----
man/densityMclust.Rd |only
man/plot.Mclust.Rd | 8 ++++----
man/plot.densityMclust.Rd |only
man/randProj.Rd | 2 +-
man/surfacePlot.Rd | 9 ++++-----
22 files changed, 64 insertions(+), 35 deletions(-)
Title: Penalized Likelihood Inference for GLMs
Diff between lqa versions 1.0-2 dated 2010-04-18 and 1.0-3 dated 2010-07-24
Description: This package provides some basic infrastructure and tools
to fit Generalized Linear Models (GLMs) via penalized
likelihood inference. Estimating procedures already implemented
are the LQA algorithm (that is where its name come from),
P-IRLS, RidgeBoost, GBlockBoost and ForwardBoost.
Author: Jan Ulbricht
Maintainer: Jan Ulbricht
DESCRIPTION | 8 -
R/cv.nng.R |only
R/lqa.default.R | 308 ++++++++++++++++++++++++++---------------------------
R/nng.update.R |only
R/nnls.R |only
R/nnls2.R |only
man/cv.nng.Rd |only
man/lqa-package.Rd | 4
8 files changed, 161 insertions(+), 159 deletions(-)
Title: Hierarchical time series
Diff between hts versions 1.1 dated 2010-03-26 and 1.2 dated 2010-07-24
Description: Methods for analysing and forecasting hierarchical time
series.
Author: Rob J Hyndman, Roman A Ahmed, and Han Lin Shang
Maintainer: Han Lin Shang
CHANGELOG |only
DESCRIPTION | 8 ++++----
R/bup.f.R | 10 +++++-----
R/hts.R | 12 ++++--------
4 files changed, 13 insertions(+), 17 deletions(-)
Title: Hidden Markov models with discrete non-parametric observation
distributions.
Diff between hmm.discnp versions 0.1-1 dated 2009-11-30 and 0.1-3 dated 2010-07-24
Description: Fits hidden Markov models with discrete non-parametric
observation distributions to data sets. Simulates data from
such models. Finds most probable underlying hidden states and
most probable sequences of such states.
Author: Rolf Turner
Maintainer: Rolf Turner
ChangeLog | 28 ++++++++++++++++++++
DESCRIPTION | 8 ++---
R/hmm.R | 2 -
R/pr.R | 9 +++---
inst/Ratfor/recurse.r | 9 ++----
man/hmm.Rd | 68 +++++++++++++++++++++++++++++++++++---------------
man/mps.Rd | 4 +-
man/pr.Rd | 12 +++++---
man/sim.hmm.Rd | 5 ++-
src/recurse.f | 13 +++++----
10 files changed, 110 insertions(+), 48 deletions(-)
Title: Hierarchical Exponential-Family Random Graph Models
Diff between hergm versions 1.2-5 dated 2010-07-03 and 1.2-6 dated 2010-07-24
Description: The R package 'hergm' implements Hierarchical
Exponential-Family Random Graph Models (HERGMs), which can be
used to model a wide range of relational data (networks).
'hergm' implements both simulation and Bayesian inference.
Author: Michael Schweinberger
Maintainer: Michael Schweinberger
DESCRIPTION | 8 -
INDEX | 2
R/hergm.R | 2
R/hergm.mcmc.R | 11 +
R/hergm.postprocess.R | 273 ++++++++++++-----------------------------------
R/hergm.relabel.R | 2
TO_DO | 1
demo/example.r | 38 +-----
man/hergm.Rd | 60 +++++-----
man/hergm.postprocess.Rd | 71 +++++-------
src/h_ergm.c | 14 +-
11 files changed, 168 insertions(+), 314 deletions(-)
Title: functions in Grid graphics
Diff between gridExtra versions 0.6 dated 2010-06-20 and 0.6.5 dated 2010-07-24
Description: misc. high-level Grid functions
Author: Baptiste Auguie
Maintainer: baptiste
gridExtra-0.6.5/gridExtra/DESCRIPTION | 10 -
gridExtra-0.6.5/gridExtra/NAMESPACE | 4
gridExtra-0.6.5/gridExtra/R/arcText.r | 1
gridExtra-0.6.5/gridExtra/R/arrange.r | 30 ++--
gridExtra-0.6.5/gridExtra/R/barbedGrob.r | 3
gridExtra-0.6.5/gridExtra/R/borderGrob.r | 8 -
gridExtra-0.6.5/gridExtra/R/colorstripGrob.r | 6
gridExtra-0.6.5/gridExtra/R/ebimage.r | 14 +-
gridExtra-0.6.5/gridExtra/R/ellipseGrob.r | 1
gridExtra-0.6.5/gridExtra/R/gridExtra-package.r | 8 -
gridExtra-0.6.5/gridExtra/R/grob-utils.r | 6
gridExtra-0.6.5/gridExtra/R/ngonGrob.r | 1
gridExtra-0.6.5/gridExtra/R/patternGrob.r | 1
gridExtra-0.6.5/gridExtra/R/pixmap.r | 13 +-
gridExtra-0.6.5/gridExtra/R/polygon.regular.r | 3
gridExtra-0.6.5/gridExtra/R/rpattern.r | 3
gridExtra-0.6.5/gridExtra/R/tableGrob.r | 128 +++++++++++---------
gridExtra-0.6.5/gridExtra/inst/doc/borders-all.pdf |only
gridExtra-0.6.5/gridExtra/inst/doc/borders.Rnw |only
gridExtra-0.6.5/gridExtra/inst/doc/borders.pdf |only
gridExtra-0.6.5/gridExtra/inst/doc/timingTables.Rnw | 58 ++-------
gridExtra-0.6.5/gridExtra/inst/doc/timingTables.pdf |binary
gridExtra-0.6.5/gridExtra/man/arrangeGrob.Rd |only
gridExtra-0.6.5/gridExtra/man/borderGrob.Rd | 3
gridExtra-0.6.5/gridExtra/man/ebimageGrob.Rd | 10 -
gridExtra-0.6.5/gridExtra/man/gridExtra-package.Rd | 6
gridExtra-0.6.5/gridExtra/man/pixmapGrob.Rd | 4
gridExtra-0.6.5/gridExtra/man/rpatternGrob.Rd | 2
gridExtra-0.6.5/gridExtra/man/tableGrob.Rd | 24 ++-
gridExtra-0.6/gridExtra/man/arrange.Rd |only
30 files changed, 194 insertions(+), 153 deletions(-)
Title: Statistical tools for the interpretation of forensic DNA
mixtures
Diff between forensim versions 1.1-5 dated 2010-06-03 and 1.1-7 dated 2010-07-24
Description: Statistical methods and simulation tools for the
interpretation of forensic DNA mixtures
Author: Hinda Haned
Maintainer: Hinda Haned
DESCRIPTION | 10 +++++-----
R/Hbsimu.R | 8 +++++---
R/simPCR2.R | 8 +++++++-
R/zzz.R | 2 +-
4 files changed, 18 insertions(+), 10 deletions(-)
Title: Implementation of optimal hierarchical clustering
Diff between flashClust versions 1.00 dated 2010-02-20 and 1.00-2 dated 2010-07-24
Description: Implementation of optimal hierarchical clustering
Author: code by Fionn Murtagh and R development team, modifications and
packaging by Peter Langfelder
Maintainer: Peter Langfelder
Changelog | 4 ++++
DESCRIPTION | 8 ++++----
man/flashClust.Rd | 29 +++++++++++++++++++++++++++++
3 files changed, 37 insertions(+), 4 deletions(-)
Title: Fit, Simulate and Diagnose Exponential-Family Models for
Networks
Diff between ergm versions 2.2-4 dated 2010-04-22 and 2.2-5 dated 2010-07-24
Description: An integrated set of tools to analyze and simulate
networks based on exponential-family random graph models
(ERGM). "ergm" is a part of the "statnet" suite of packages for
network analysis. For a list of functions type:
help(package='ergm')
Author: Mark S. Handcock
Maintainer: David R. Hunter
ergm-2.2-4/ergm/tests/constrain_observed.R |only
ergm-2.2-5/ergm/DESCRIPTION | 8 +--
ergm-2.2-5/ergm/R/ergm.MCMCse.lognormal.R | 36 ++++++++-------
ergm-2.2-5/ergm/R/ergm.R | 26 ++++++-----
ergm-2.2-5/ergm/R/ergm.estimate.R | 48 ++++++++++-----------
ergm-2.2-5/ergm/R/ergm.etamap.R | 13 ++++-
ergm-2.2-5/ergm/R/ergm.llik.R | 2
ergm-2.2-5/ergm/R/ergm.mainfitloop.R | 4 -
ergm-2.2-5/ergm/R/ergm.pl.R | 10 +++-
ergm-2.2-5/ergm/R/ergm.robmon.R | 9 ++-
ergm-2.2-5/ergm/R/network.update.R | 66 ++++++++++++++++++++++++++++-
ergm-2.2-5/ergm/R/print.ergm.R | 10 +++-
ergm-2.2-5/ergm/R/print.summary.ergm.R | 4 +
ergm-2.2-5/ergm/R/simulate.ergm.R | 13 +++--
ergm-2.2-5/ergm/inst/logfile.txt |only
ergm-2.2-5/ergm/man/ergm-internal.Rd | 3 +
ergm-2.2-5/ergm/man/simulate.ergm.Rd | 10 ++--
ergm-2.2-5/ergm/src/MPLE.c | 18 ++++---
ergm-2.2-5/ergm/src/MPLE.h | 1
19 files changed, 193 insertions(+), 88 deletions(-)
Title: Functions for analysing epidemiological data
Diff between epiR versions 0.9-22 dated 2009-12-09 and 0.9-26 dated 2010-07-24
Description: A package for analysing epidemiological data. Contains
functions for directly and indirectly adjusting measures of
disease frequency, quantifying measures of association on the
basis of single or multiple strata of count data presented in a
contingency table, and computing confidence intervals around
incidence risk and incidence rate estimates. Miscellaneous
functions for use in meta-analysis, diagnostic test
interpretation, and sample size calculations.
Author: Mark Stevenson
Maintainer: Mark Stevenson
epiR-0.9-22/epiR/doc/epiR.pdf |only
epiR-0.9-26/epiR/DESCRIPTION | 8 +++----
epiR-0.9-26/epiR/R/epi.ccc.r | 34 +++++++++++++++++++--------------
epiR-0.9-26/epiR/R/epi.conf.R | 5 +++-
epiR-0.9-26/epiR/R/epi.simplesize.R | 8 +++----
epiR-0.9-26/epiR/R/epi.stratasize.R | 16 +++++++--------
epiR-0.9-26/epiR/doc/epiR-manual.pdf |only
epiR-0.9-26/epiR/man/epi.ccc.Rd | 23 ++++++++++++++--------
epiR-0.9-26/epiR/man/epi.conf.Rd | 19 ++++++++++++++----
epiR-0.9-26/epiR/man/epi.simplesize.Rd | 14 ++++++-------
epiR-0.9-26/epiR/man/epi.stratasize.Rd | 21 ++++++++++----------
11 files changed, 88 insertions(+), 60 deletions(-)
Title: eVenn: A powerful tool to compare lists and draw Venn diagrams.
Diff between eVenn versions 1.01 dated 2010-06-25 and 1.21 dated 2010-07-24
Description: Compute a matrix comparison of lists (from 2 to infinite)
and plot the results in a Venn diagram if (N<=4). It is
possible to produce a complete annotated file, merging the
annotations of the compared lists.
Author: Nicolas Cagnard
Maintainer: Nicolas Cagnard
eVenn-1.01/eVenn/R/evenn.R |only
eVenn-1.21/eVenn/DESCRIPTION | 14 ++++++--------
eVenn-1.21/eVenn/R/eVenn_v1.21.R |only
eVenn-1.21/eVenn/data/res2.rda |binary
eVenn-1.21/eVenn/data/res3.rda |binary
eVenn-1.21/eVenn/data/res4.rda |binary
eVenn-1.21/eVenn/man/eVenn-package.Rd | 21 ++++++++++++++-------
eVenn-1.21/eVenn/man/evenn.Rd | 16 ++++++++++------
eVenn-1.21/eVenn/man/res2.Rd | 2 +-
eVenn-1.21/eVenn/man/res3.Rd | 2 +-
eVenn-1.21/eVenn/man/res4.Rd | 2 +-
11 files changed, 33 insertions(+), 24 deletions(-)
Title: Dynamic trees for learning and design
Diff between dynaTree versions 1.0 dated 2010-06-02 and 1.0-1 dated 2010-07-24
Description: Inference by sequential Monte Carlo for dynamic tree
regression and classification models by particle learning (PL),
with hooks provided for sequential design and optimization.
Illustrative examples from the original dynamic trees paper are
facilitated by demos in the package; see
demo(package="dynaTree")
Author: Robert B. Gramacy
Maintainer: Robert B. Gramacy
ChangeLog | 10 ++
DESCRIPTION | 10 +-
R/dynaTree.R | 40 ++++++---
R/plot.R | 31 ++++---
demo/fried.R | 10 +-
man/dynaTree-package.Rd | 2
man/dynaTree.Rd | 37 +++++----
man/plot.dynaTree.Rd | 9 +-
src/cloud.cc | 25 ++++++
src/cloud.h | 25 +++++-
src/dynaTree.cc | 32 ++++++-
src/pall.c | 30 +++++++
src/pall.h | 28 ++++++
src/particle.cc | 28 ++++++
src/particle.h | 25 +++++-
src/tree.cc | 196 ++++++++++++++++++++++++++++--------------------
src/tree.h | 41 +++++++---
17 files changed, 422 insertions(+), 157 deletions(-)
Title: Analysis of diffusion weighted imaging (DWI) data
Diff between dti versions 0.9-2 dated 2010-07-07 and 0.9-2.1 dated 2010-07-24
Description: Diffusion Weighted Imaging is a Magnetic Resonance Imaging
modality, that measures diffusion of water in tissues like the
human brain. The package contains R-functions to process
diffusion-weighted data in the context of the diffusion tensor
model (DTI). This includes the calculation of anisotropy
measures and, most important, the implementation of our
structural adaptive smoothing algorithm as described in K.
Tabelow, J. Polzehl, V. Spokoiny, and H.U. Voss, Diffusion
Tensor Imaging: Structural Adaptive Smoothing, Neuroimage
39(4), 1763-1773 (2008) and J. Polzehl, K. Tabelow, Structure
adaptive smoothing Diffusion Tensor Imaging data: the R Package
dti Journal of Statistical Software, 31, 1-24 (2009).
Additionally the package contains (still experimental) code for
the analysis of high angular resolution diffusion weighted
imaging (HARDI) data and fiber tracking.
Author: Karsten Tabelow
Maintainer: Karsten Tabelow
dti-0.9-2.1/dti/DESCRIPTION | 17 +++-
dti-0.9-2.1/dti/HISTORY | 4 +
dti-0.9-2.1/dti/R/mixtensorpl.r | 32 +++++----
dti-0.9-2.1/dti/R/tracking.r | 2
dti-0.9-2.1/dti/README |only
dti-0.9-2.1/dti/man/dti.smooth-methods.Rd | 5 +
dti-0.9-2.1/dti/man/dtiTensor-methods.Rd | 3
dti-0.9-2.1/dti/man/dwiMixtensor-methods.Rd | 4 -
dti-0.9-2.1/dti/man/plot-methods.Rd | 17 +++-
dti-0.9-2.1/dti/man/readDWIdata.Rd | 9 ++
dti-0.9-2.1/dti/man/show3d-methods.Rd | 36 ++++++----
dti-0.9-2.1/dti/man/tracking-methods.Rd | 12 ++-
dti-0.9-2.1/dti/src/Makevars | 1
dti-0.9-2.1/dti/src/mixtens.f | 89 ++++++++++++++++----------
dti-0.9-2/dti/R/mixtensor.r |only
dti-0.9-2/dti/man/dwiMixtensor.old-methods.Rd |only
dti-0.9-2/dti/src/mixtensor.c |only
17 files changed, 153 insertions(+), 78 deletions(-)
Title: Dendrochronology Program Library in R
Diff between dplR versions 1.3.5 dated 2010-07-06 and 1.3.6 dated 2010-07-24
Description: This package contains functions for performing some
standard tree-ring analyses.
Author: Andy Bunn with contributions from Mikko Korpela, Franco Biondi,
and Christian Zang
Maintainer: Andy Bunn
dplR-1.3.5/dplR/R/plot.series.rwl.R |only
dplR-1.3.6/dplR/ChangeLog | 20 ++++++++
dplR-1.3.6/dplR/DESCRIPTION | 8 +--
dplR-1.3.6/dplR/R/ccf.series.rwl.R | 52 ++++++++++++++++-----
dplR-1.3.6/dplR/R/corr.rwl.seg.R | 79 ++++++++++++++++++++++++---------
dplR-1.3.6/dplR/R/corr.series.seg.R | 51 +++++++++++++++------
dplR-1.3.6/dplR/R/qa.xdate.R | 6 --
dplR-1.3.6/dplR/R/rcs.R | 12 ++++-
dplR-1.3.6/dplR/R/series.rwl.plot.R |only
dplR-1.3.6/dplR/man/ccf.series.rwl.Rd | 35 ++++++++------
dplR-1.3.6/dplR/man/corr.rwl.seg.Rd | 16 +++++-
dplR-1.3.6/dplR/man/corr.series.seg.Rd | 36 +++++----------
dplR-1.3.6/dplR/man/series.rwl.plot.Rd | 42 +++++++++--------
13 files changed, 237 insertions(+), 120 deletions(-)
Title: A Package for Medical Image Analysis (S4 implementation)
Diff between dcemriS4 versions 0.20.2 dated 2010-01-05 and 0.32 dated 2010-07-24
Description: A collection of routines and documentation that allows one
to perform voxel-wise quantitative analysis of dynamic
contrast-enhanced or diffusion-weighted MRI data.
Author: Brandon Whitcher and Volker Schmid, with contributions from
Andrew Thornton
Maintainer: Brandon Whitcher
dcemriS4-0.20.2/dcemriS4/R/analyzeS4.R |only
dcemriS4-0.20.2/dcemriS4/R/auditTrail.R |only
dcemriS4-0.20.2/dcemriS4/R/convert_anlz.R |only
dcemriS4-0.20.2/dcemriS4/R/convert_nifti.R |only
dcemriS4-0.20.2/dcemriS4/R/hotmetal.R |only
dcemriS4-0.20.2/dcemriS4/R/miscellaneous.R |only
dcemriS4-0.20.2/dcemriS4/R/niftiS4.R |only
dcemriS4-0.20.2/dcemriS4/R/plot.R |only
dcemriS4-0.20.2/dcemriS4/R/readS4.R |only
dcemriS4-0.20.2/dcemriS4/R/tim_colors.R |only
dcemriS4-0.20.2/dcemriS4/R/transform.R |only
dcemriS4-0.20.2/dcemriS4/R/writeS4.R |only
dcemriS4-0.20.2/dcemriS4/R/zzz.R |only
dcemriS4-0.20.2/dcemriS4/demo |only
dcemriS4-0.20.2/dcemriS4/inst/doc/dcemri.Rnw_off |only
dcemriS4-0.20.2/dcemriS4/inst/doc/more.tex |only
dcemriS4-0.20.2/dcemriS4/inst/nifti/avg152T1.hdr.gz |only
dcemriS4-0.20.2/dcemriS4/inst/nifti/avg152T1.img.gz |only
dcemriS4-0.20.2/dcemriS4/inst/nifti/avg152T1_LR_nifti.nii.gz |only
dcemriS4-0.20.2/dcemriS4/inst/nifti/avg152T1_RL_nifti.nii.gz |only
dcemriS4-0.20.2/dcemriS4/inst/nifti/filtered_func_data.nii.gz |only
dcemriS4-0.20.2/dcemriS4/inst/nifti/zstat1.nii.gz |only
dcemriS4-0.20.2/dcemriS4/man/anlz-class.Rd |only
dcemriS4-0.20.2/dcemriS4/man/anlz.Rd |only
dcemriS4-0.20.2/dcemriS4/man/as_nifti.Rd |only
dcemriS4-0.20.2/dcemriS4/man/audit_trail-methods.Rd |only
dcemriS4-0.20.2/dcemriS4/man/audit_trail.Rd |only
dcemriS4-0.20.2/dcemriS4/man/aux_file-methods.Rd |only
dcemriS4-0.20.2/dcemriS4/man/bitwise.Rd |only
dcemriS4-0.20.2/dcemriS4/man/coerce-methods.Rd |only
dcemriS4-0.20.2/dcemriS4/man/convert_anlz.Rd |only
dcemriS4-0.20.2/dcemriS4/man/convert_nifti.Rd |only
dcemriS4-0.20.2/dcemriS4/man/descrip-methods.Rd |only
dcemriS4-0.20.2/dcemriS4/man/hotmetal.Rd |only
dcemriS4-0.20.2/dcemriS4/man/image-methods.Rd |only
dcemriS4-0.20.2/dcemriS4/man/integerTranslation.Rd |only
dcemriS4-0.20.2/dcemriS4/man/miscellaneous.Rd |only
dcemriS4-0.20.2/dcemriS4/man/nifti-class.Rd |only
dcemriS4-0.20.2/dcemriS4/man/nifti.Rd |only
dcemriS4-0.20.2/dcemriS4/man/niftiAuditTrail-class.Rd |only
dcemriS4-0.20.2/dcemriS4/man/niftiExtension-class.Rd |only
dcemriS4-0.20.2/dcemriS4/man/niftiExtensionSection-class.Rd |only
dcemriS4-0.20.2/dcemriS4/man/nifti_assign-methods.Rd |only
dcemriS4-0.20.2/dcemriS4/man/orthographic-methods.Rd |only
dcemriS4-0.20.2/dcemriS4/man/overlay-methods.Rd |only
dcemriS4-0.20.2/dcemriS4/man/performPermutation.Rd |only
dcemriS4-0.20.2/dcemriS4/man/q2R.Rd |only
dcemriS4-0.20.2/dcemriS4/man/read_anlz.Rd |only
dcemriS4-0.20.2/dcemriS4/man/read_nifti.Rd |only
dcemriS4-0.20.2/dcemriS4/man/reorient.Rd |only
dcemriS4-0.20.2/dcemriS4/man/tim_colors.Rd |only
dcemriS4-0.20.2/dcemriS4/man/transformCoordinate.Rd |only
dcemriS4-0.20.2/dcemriS4/man/write_anlz.Rd |only
dcemriS4-0.20.2/dcemriS4/man/write_nifti.Rd |only
dcemriS4-0.32/dcemriS4/DESCRIPTION | 20
dcemriS4-0.32/dcemriS4/NAMESPACE | 16
dcemriS4-0.32/dcemriS4/R/aif.R | 2
dcemriS4-0.32/dcemriS4/R/dcemri_bayes.R | 7
dcemriS4-0.32/dcemriS4/R/dcemri_lm.R | 45
dcemriS4-0.32/dcemriS4/R/dcemri_map.R | 3
dcemriS4-0.32/dcemriS4/R/dcemri_spline.R | 136 +
dcemriS4-0.32/dcemriS4/R/dwi.R | 2
dcemriS4-0.32/dcemriS4/R/flipangle.R | 8
dcemriS4-0.32/dcemriS4/R/kineticmodel.R | 26
dcemriS4-0.32/dcemriS4/R/wrappers.R | 2
dcemriS4-0.32/dcemriS4/inst/doc/dcemriS4.Rnw | 283 ---
dcemriS4-0.32/dcemriS4/inst/doc/dcemriS4.pdf |binary
dcemriS4-0.32/dcemriS4/inst/doc/dcemriS4withNifti.Rnw |only
dcemriS4-0.32/dcemriS4/inst/doc/dcemriS4withNifti.pdf |only
dcemriS4-0.32/dcemriS4/man/aif.Rd | 2
dcemriS4-0.32/dcemriS4/man/buckley.Rd | 2
dcemriS4-0.32/dcemriS4/man/conv_fft.Rd | 2
dcemriS4-0.32/dcemriS4/man/dam.Rd | 2
dcemriS4-0.32/dcemriS4/man/dce_bayes.Rd | 17
dcemriS4-0.32/dcemriS4/man/dce_map.Rd | 19
dcemriS4-0.32/dcemriS4/man/dce_spline.Rd | 32
dcemriS4-0.32/dcemriS4/man/dcemri.Rd | 16
dcemriS4-0.32/dcemriS4/man/dwi.Rd | 2
dcemriS4-0.32/dcemriS4/man/extract.Rd | 2
dcemriS4-0.32/dcemriS4/man/flipangle.Rd | 2
dcemriS4-0.32/dcemriS4/man/ftm.Rd | 2
dcemriS4-0.32/dcemriS4/man/kineticmodel.Rd | 2
dcemriS4-0.32/dcemriS4/man/shift3D.Rd | 2
dcemriS4-0.32/dcemriS4/tests/Examples/dcemriS4-Ex.Rout.save | 799 ----------
84 files changed, 253 insertions(+), 1200 deletions(-)
Title: R/C++ Tools for Literate Statistical Practice
Diff between cxxPack versions 7.0.5 dated 2010-07-05 and 7.0.6 dated 2010-07-24
Description: Builds on the Rcpp package/library by providing an
application layer library on the C++ side that includes models
of fundamental R data structures like data frames and time
series. Includes an extensible collection of tools like special
functions and a financial date library. Extends Sweave by
permitting vignettes (or research compendium docs) to include
C++ code chunks. This package/library might be used to develop
R and C++ solutions in parallel, to speed the transition from
experimental R code to production C++ code, or to develop rich
research compendium documents following literate statistical
practice that have embedded R and C++ code chunks. There is a
package vignette that provides many examples.
Author: Dominick Samperi
Maintainer: Dominick Samperi
cxxPack-7.0.5/cxxPack/src/Makevars.win |only
cxxPack-7.0.6/cxxPack/DESCRIPTION | 8 ++++----
cxxPack-7.0.6/cxxPack/NEWS | 5 ++++-
cxxPack-7.0.6/cxxPack/configure.win |only
cxxPack-7.0.6/cxxPack/src/Makevars.win.in |only
5 files changed, 8 insertions(+), 5 deletions(-)
Title: Covariance Matrix Adapting Evolutionary Strategy
Diff between cmaes versions 1.0-8 dated 2010-06-12 and 1.0-9 dated 2010-07-24
Description: Single objective optimization using a CMA-ES.
Author: Heike Trautmann
Maintainer: Olaf Mersmann
ChangeLog | 9 +++++++++
DESCRIPTION | 6 +++---
R/cmaes.R | 3 +++
3 files changed, 15 insertions(+), 3 deletions(-)
Title: Classification and Regression Training
Diff between caret versions 4.43 dated 2010-07-01 and 4.44 dated 2010-07-24
Description: Misc functions for training and plotting classification
and regression models
Author: Max Kuhn. Contributions from Jed Wing, Steve Weston, Andre
Williams, Chris Keefer and Allan Engelhardt
Maintainer: Max Kuhn
DESCRIPTION | 11 ++++---
NAMESPACE | 1
R/createGrid.R | 19 ++++++++++++
R/createModel.R | 40 ++++++++++++++++++++++++++-
R/misc.R | 43 +++++++++++++++++++++++------
R/predictionFunction.R | 65 +++++++++++++++++++++++++++++++++++++++++++-
R/predictors.R | 17 ++++++++---
R/probFunction.R | 15 ++++++++++
R/selection.R | 6 ++--
inst/NEWS | 8 +++++
inst/doc/caretMisc.pdf |binary
inst/doc/caretSelection.pdf |binary
inst/doc/caretTrain.Rnw | 17 +++++++++++
inst/doc/caretTrain.pdf |binary
inst/doc/caretVarImp.pdf |binary
man/predictors.Rd | 6 +++-
man/train.Rd | 5 ++-
17 files changed, 228 insertions(+), 25 deletions(-)
Title: Evaluation and experimental design for binomial group testing
Diff between binGroup versions 1.0-5 dated 2010-06-10 and 1.0-6 dated 2010-07-24
Description: This package provides methods for estimation and
hypothesis testing of proportions in group testing designs. It
involves methods for estimating a proportion in a single
population (assuming sensitivity and specificty 1 in designs
with equal group sizes), as well as hypothesis tests and
functions for experimental design for this situation. For
estimating one proportion or the difference of proportions, a
number of confidence interval methods are included, which can
deal with various different pool sizes. Further, regression
methods are implemented for simple pooling and matrix pooling
designs.
Author: Boan Zhang, Christopher Bilder, Brad Biggerstaff, Frank
Schaarschmidt
Maintainer: Frank Schaarschmidt
binGroup-1.0-5/binGroup/R/bgtAC.R |only
binGroup-1.0-5/binGroup/R/bgtBlaker.R |only
binGroup-1.0-5/binGroup/R/bgtCP.R |only
binGroup-1.0-5/binGroup/R/bgtPowerI.R |only
binGroup-1.0-5/binGroup/R/bgtSOC.R |only
binGroup-1.0-5/binGroup/R/bgtWald.R |only
binGroup-1.0-5/binGroup/R/bgtWidthI.R |only
binGroup-1.0-5/binGroup/R/bgtWilson.R |only
binGroup-1.0-5/binGroup/R/binAC.R |only
binGroup-1.0-5/binGroup/R/binBlaker.R |only
binGroup-1.0-5/binGroup/R/binCP.R |only
binGroup-1.0-5/binGroup/R/binSOC.R |only
binGroup-1.0-5/binGroup/R/binWald.R |only
binGroup-1.0-5/binGroup/R/binWilson.R |only
binGroup-1.0-6/binGroup/DESCRIPTION | 27 +-
binGroup-1.0-6/binGroup/NAMESPACE |only
binGroup-1.0-6/binGroup/R/bgtCI.R | 222 +++++++++++++++++++++
binGroup-1.0-6/binGroup/R/bgtPower.R | 137 ++++++++++++
binGroup-1.0-6/binGroup/R/bgtWidth.R | 59 +++++
binGroup-1.0-6/binGroup/R/binCI.R | 170 ++++++++++++++++
binGroup-1.0-6/binGroup/R/pooledBin.R |only
binGroup-1.0-6/binGroup/R/pooledBinDiff.R |only
binGroup-1.0-6/binGroup/R/pooledBinMisc.R |only
binGroup-1.0-6/binGroup/R/print.poolbin.R |only
binGroup-1.0-6/binGroup/R/print.poolbindiff.R |only
binGroup-1.0-6/binGroup/R/summary.poolbin.R |only
binGroup-1.0-6/binGroup/R/summary.poolbindiff.R |only
binGroup-1.0-6/binGroup/man/bgtCI.Rd | 4
binGroup-1.0-6/binGroup/man/bgtvs.Rd | 2
binGroup-1.0-6/binGroup/man/binGroup-package.Rd | 61 ++++-
binGroup-1.0-6/binGroup/man/pooledBin.Rd |only
binGroup-1.0-6/binGroup/man/pooledBinDiff.Rd |only
binGroup-1.0-6/binGroup/man/print.poolbindiff.Rd |only
binGroup-1.0-6/binGroup/man/summary.poolbindiff.Rd |only
34 files changed, 656 insertions(+), 26 deletions(-)
Title: table-, tapply-, and split-like functionality for matrix and
big.matrix objects.
Diff between bigtabulate versions 1.0.11 dated 2010-06-09 and 1.0.13 dated 2010-07-24
Description: This package extends the bigmemory package with table- and
split-like support for big.matrix objects. The functions may
also be used with regular R matrices for improving speed and
memory-efficiency.
Author: Michael J. Kane
Maintainer: Mike and Jay
DESCRIPTION | 8 +++---
man/bigtabulate-package.Rd | 4 +--
src/bigtabulate.cpp | 60 ++++++++++++++++++++++++---------------------
3 files changed, 39 insertions(+), 33 deletions(-)
Title: bibtex parser
Diff between bibtex versions 0.2-0 dated 2010-06-19 and 0.2-1 dated 2010-07-24
Description: Utility to parse a bibtex file
Author: Romain Francois
Maintainer: Romain Francois
bibtex-0.2-0/bibtex/src-i386 |only
bibtex-0.2-0/bibtex/src-x86_64 |only
bibtex-0.2-1/bibtex/DESCRIPTION | 8 +-
bibtex-0.2-1/bibtex/R/bibtex.R | 33 ++++++---
bibtex-0.2-1/bibtex/inst/grammar/biblex.l | 43 ++++++++++--
bibtex-0.2-1/bibtex/inst/grammar/bibparse.y | 2
bibtex-0.2-1/bibtex/man/bibtex-package.Rd | 4 -
bibtex-0.2-1/bibtex/man/read.bib.Rd | 13 +++
bibtex-0.2-1/bibtex/src/biblex.c | 93 ++++++++++++++++++----------
bibtex-0.2-1/bibtex/src/bibparse.c | 2
10 files changed, 139 insertions(+), 59 deletions(-)
Title: A collection of statistical tools for biologists
Diff between asbio versions 0.3-10 dated 2010-07-07 and 0.3-12 dated 2010-07-24
Description: Contains functions from the book: "Applied Statistics for
Biologists"
Author: Ken Aho; many thanks to V. Winston and D. Roberts
Maintainer: Ken Aho
DESCRIPTION | 6 +-
R/anm.ExpDesign.tck.r |only
R/anm.ci.tck.r | 16 ++-----
R/anm.samp.design.tck.r |only
R/bplot.r | 100 ++++++++++++++++++++++++++++--------------------
R/const.R | 1
R/demos.r |only
R/fidelity.R | 3 -
R/loglik.tck.r | 3 -
R/samp.dist.tck.r | 47 ++++++++++++----------
R/see.norm.r |only
R/veg.table.r | 22 +++++++---
man/anm.ExpDesign.Rd | 7 ++-
man/anm.samp.design.Rd | 5 +-
man/bplot.rd | 3 -
man/ci.p.rd | 4 -
man/demos.rd |only
man/samp.dist.Rd | 2
man/see.norm.tck.rd |only
19 files changed, 127 insertions(+), 92 deletions(-)
Title: Algorithms for Quantitative Pedology
Diff between aqp versions 0.88 dated 2010-07-08 and 0.90 dated 2010-07-24
Description: R package for working with and plotting soil profile data.
Author: Dylan Beaudette
Maintainer: Dylan Beaudette
aqp-0.88/aqp/inst/doc/aqp_extended_manual.pdf |only
aqp-0.90/aqp/DESCRIPTION | 10 -
aqp-0.90/aqp/NEWS | 16 ++
aqp-0.90/aqp/R/plot_distance_graph.R |only
aqp-0.90/aqp/R/profile_compare.R | 150 +++++++++++++++++++-------
aqp-0.90/aqp/R/random_profile.R | 6 -
aqp-0.90/aqp/R/soil_slotting.R | 7 +
aqp-0.90/aqp/R/unroll.R | 9 +
aqp-0.90/aqp/R/zzz.R |only
aqp-0.90/aqp/TODO | 2
aqp-0.90/aqp/data/sp1.rda |binary
aqp-0.90/aqp/inst/doc/aqp-vignette.Rnw |only
aqp-0.90/aqp/inst/doc/aqp-vignette.pdf |only
aqp-0.90/aqp/man/aqp-package.Rd | 5
aqp-0.90/aqp/man/f.noise.Rd | 88 ++++++++-------
aqp-0.90/aqp/man/plot_distance_graph.Rd |only
aqp-0.90/aqp/man/profile_compare.Rd | 15 +-
aqp-0.90/aqp/man/random_profile.Rd | 3
aqp-0.90/aqp/man/soil.slot.Rd | 4
aqp-0.90/aqp/man/soil.slot.multiple.Rd | 2
aqp-0.90/aqp/man/sp2.Rd | 6 -
aqp-0.90/aqp/man/unroll.Rd | 4
22 files changed, 227 insertions(+), 100 deletions(-)
Title: Actuarial functions
Diff between actuar versions 1.1-0 dated 2010-02-23 and 1.1-1 dated 2010-07-24
Description: Additional actuarial science functionality, mostly in the
fields of loss distributions, risk theory (including ruin
theory), simulation of compound hierarchical models and
credibility theory, for the moment.
Author: Vincent Goulet, Sébastien Auclair, Christophe Dutang, Xavier
Milhaud, Tommy Ouellet, Louis-Philippe Pouliot, Mathieu Pigeon
Maintainer: Vincent Goulet
DESCRIPTION | 8 ++++----
R/cm.R | 4 ++--
inst/CITATION | 10 +++++++---
inst/NEWS | 15 ++++++++++++++-
inst/doc/actuar.pdf |binary
inst/doc/coverage.pdf |binary
inst/doc/credibility.pdf |binary
inst/doc/lossdist.pdf |binary
inst/doc/risk.pdf |binary
inst/doc/simulation.pdf |binary
10 files changed, 27 insertions(+), 10 deletions(-)
Title: Modelling and estimation of the yield curve
Diff between YieldCurve versions 2.0 dated 2009-11-04 and 3.0 dated 2010-07-24
Description: Modelling the yield curve with some parametric models. The
models implemented are: Nelson-Siegel, Diebold-Li and Svensson.
The package also includes the data of the term structure of
interest rate of Federal Reserve Bank and European Central
Bank.
Author: Sergio Salvino Guirreri
Maintainer: Sergio Salvino Guirreri
CITATION |only
DESCRIPTION | 11 +++++------
2 files changed, 5 insertions(+), 6 deletions(-)
Title: Social Relation Model (SRM) analyses for single or multiple
round-robin groups
Diff between TripleR versions 0.1.1 dated 2009-06-16 and 0.4 dated 2010-07-24
Description: Social Relation Model (SRM) analyses for single or
multiple round-robin groups are performed. These analyses are
either based on one manifest variable, one latent construct
measured by two manifest variables, two manifest variables and
their bivariate relations, or two latent constructs each
measured by two manifest variables. Within-group t-tests for
variance components and covariances are provided for single
groups, between-groups t-tests for multiple groups. Preliminary
handling for missing values is provided.
Author: S.C. Schmukle, F.D. Schönbrodt and M.D. Back
Maintainer: Felix Schönbrodt
DESCRIPTION | 38
NAMESPACE | 18
R/RR.r | 1904 +++++++++++++++++++++++++++++++++++------------
data/likingLong.tab |only
data/multiGroup.tab |only
data/multiLikingLong.tab |only
inst/CITATION | 46 -
inst/doc |only
man/RR.Rd | 288 ++++---
man/TripleR-package.Rd | 64 -
man/getEffects.Rd |only
man/long2matrix.Rd |only
man/matrix2long.Rd |only
man/plot_missings.Rd |only
14 files changed, 1730 insertions(+), 628 deletions(-)
Title: Sampling designs and parameter estimation in finite population
Diff between TeachingSampling versions 1.4.9 dated 2010-03-11 and 1.7.9 dated 2010-07-24
More information about TeachingSampling at CRAN
Description: Foundations of inference in survey sampling
Author: Hugo Andres Gutierrez Rojas
Maintainer: Hugo Andres Gutierrez Rojas
DESCRIPTION | 8 ++++----
R/PikPPS.r |only
R/S.piPS.r | 2 +-
doc |only
man/PikPPS.rd |only
man/S.STSI.rd | 2 +-
6 files changed, 6 insertions(+), 6 deletions(-)
Permanent link
Title: Sensory data analysis with R
Diff between SensoMineR versions 1.10 dated 2009-10-02 and 1.11 dated 2010-07-24
Description: an R package for analysing sensory data
Author: Francois Husson, Sebastien Le
Maintainer: Francois Husson
DESCRIPTION | 8
NAMESPACE | 2
R/carto.R | 3
R/cpa.R | 4
R/fasnt.R |only
R/fast.R | 563 ++++++++++++++++++++++++++++-----------------------
R/graphinter.R | 4
R/nappeplot.R | 3
R/nappesortplot.R |only
R/paneliperf.R | 1
R/panellipse.R | 11
R/panelmatch.R | 2
R/plot.fasnt.R |only
R/pmfa.R | 12 -
R/print.fasnt.R |only
R/simulation.R | 2
data/perfume.rda |binary
data/smoothies.rda |only
man/ardi.Rd | 3
man/cpa.Rd | 5
man/decat.Rd | 4
man/fasnt.Rd |only
man/fast.Rd | 20 +
man/nappesortplot.Rd |only
man/panellipse.Rd | 3
man/panelmatch.Rd | 6
man/perfume.Rd | 9
man/plot.fasnt.Rd |only
man/print.fasnt.Rd |only
man/print.fast.Rd | 2
man/smoothies.Rd |only
31 files changed, 376 insertions(+), 291 deletions(-)
Title: Quasi-likelihood and indirect inference in non-Gaussian
stochastic volatility models
Diff between SV versions 1.2.4 dated 2010-05-08 and 1.3.0 dated 2010-07-24
Description: Quasi-likelihood and indirect inference in non-Gaussian
stochastic volatility models for univariate and financial data.
For univariate data both quasi-likelihood estimation and
indirect inference are implemented, while for the bivariate
data a quasi-likelihood method is implemented.
Author: Øivind Skare
Maintainer: Øivind Skare
SV-1.2.4/SV/tests/testArma.cc |only
SV-1.2.4/SV/tests/testfuncs.cc |only
SV-1.3.0/SV/DESCRIPTION | 18
SV-1.3.0/SV/NAMESPACE | 1
SV-1.3.0/SV/R/sv.R | 444 ++++++++++++++---
SV-1.3.0/SV/R/zzz.R | 2
SV-1.3.0/SV/man/IndirectInference.Rd | 38 +
SV-1.3.0/SV/man/QL.Rd | 18
SV-1.3.0/SV/man/QLmulti.Rd | 11
SV-1.3.0/SV/man/SimulateVolatility.Rd | 14
SV-1.3.0/SV/man/SimulateVolatilityMulti.Rd | 11
SV-1.3.0/SV/src/SV.cc | 746 ++++++++++++++++++-----------
SV-1.3.0/SV/src/basic.cc | 19
SV-1.3.0/SV/src/basic.h | 1
SV-1.3.0/SV/src/bfgs.cc | 12
SV-1.3.0/SV/src/bfgs.h | 2
SV-1.3.0/SV/src/conjugate.cc | 67 +-
SV-1.3.0/SV/src/conjugate.h | 4
SV-1.3.0/SV/src/indirect.cc | 301 +++++++++++
SV-1.3.0/SV/src/indirect.h | 39 +
SV-1.3.0/SV/src/math.cc | 16
SV-1.3.0/SV/src/math.h | 1
SV-1.3.0/SV/src/parameters.cc | 88 ++-
SV-1.3.0/SV/src/parameters.h | 22
SV-1.3.0/SV/src/parametersMulti.cc | 45 +
SV-1.3.0/SV/src/parametersMulti.h | 30 -
SV-1.3.0/SV/src/ql.cc | 599 ++++++++++++++++++++---
SV-1.3.0/SV/src/ql.h | 111 +++-
SV-1.3.0/SV/src/simulate.cc | 57 +-
SV-1.3.0/SV/src/simulate.h | 14
SV-1.3.0/SV/tests/testArma.C |only
SV-1.3.0/SV/tests/testfuncs.C |only
32 files changed, 2086 insertions(+), 645 deletions(-)
Title: Variable metric nonlinear function minimization with bounds
constraints
Diff between Rvmmin versions 0.92 dated 2010-05-28 and 0.95 dated 2010-07-24
Description: Variable metric nonlinear function minimization with
bounds constraints
Author: John C. Nash
Maintainer: John C. Nash
DESCRIPTION | 10 ++++-----
R/Rvmmin.R | 63 ++++++++++++++++++++++++++++++++++++++++++----------------
man/Rvmmin.Rd | 53 ++++++++++++++++++++++++++++++++++++++++++++++--
3 files changed, 102 insertions(+), 24 deletions(-)
Title: DBI/RJDBC interface to PostgreSQL Database
Diff between RpgSQL versions 0.1-0 dated 2010-02-14 and 0.1-3.1 dated 2010-07-24
Description: DBI interface to PostgreSQL database via RJDBC.
Author: G. Grothendieck
Maintainer: G. Grothendieck
DESCRIPTION | 10 +++++-----
INSTALL | 4 +++-
NEWS |only
R/class.R | 39 +++++++++++++++++++++++++++++++--------
4 files changed, 39 insertions(+), 14 deletions(-)
Title: Conjugate gradient minimization of nonlinear functions with box
constraints
Diff between Rcgmin versions 0.7 dated 2010-04-04 and 0.8 dated 2010-07-24
Description: Conjugate gradient minimization of nonlinear functions
with box constraints incorporating Dai/Yuan update
Author: John C. Nash
Maintainer: John C. Nash
DESCRIPTION | 8 ++++----
R/Rcgmin.R | 24 ++++++++++++++++++++++++
2 files changed, 28 insertions(+), 4 deletions(-)
Title: SQLite interface for R
Diff between RSQLite versions 0.9-1 dated 2010-05-29 and 0.9-2 dated 2010-07-24
Description: Database Interface R driver for SQLite. This package
embeds the SQLite database engine in R and provides an
interface compliant with the DBI package. The source for the
SQLite engine (version 3.6.23.1) is included.
Author: David A. James
Maintainer: Seth Falcon
DESCRIPTION | 6
TAGS |15532 ++++++++++++++++++++++-----------------------
inst/NEWS | 5
man/dbSendQuery-methods.Rd | 1
src/RS-SQLite.c | 13
5 files changed, 7783 insertions(+), 7774 deletions(-)
Title: Seismic Time Series Analysis Tools
Diff between RSEIS versions 2.3-3 dated 2009-12-13 and 2.4-1 dated 2010-07-24
Description: Multiple interactive codes to analyze seismic data, via,
spectrum analysis, wavelet transforms, particle motion,
hodograms.
Author: Jonathan M. Lees
Maintainer: Jonathan M. Lees
RSEIS-2.3-3/RSEIS/R/BKpfile2ypx.R |only
RSEIS-2.3-3/RSEIS/R/Mine.Teles.R |only
RSEIS-2.3-3/RSEIS/R/TTteles.R |only
RSEIS-2.3-3/RSEIS/R/gwpix2ypx.R |only
RSEIS-2.3-3/RSEIS/man/BKpfile2ypx.Rd |only
RSEIS-2.3-3/RSEIS/man/Mine.Teles.Rd |only
RSEIS-2.3-3/RSEIS/man/TTteles.Rd |only
RSEIS-2.3-3/RSEIS/man/gwpix2ypx.Rd |only
RSEIS-2.4-1/RSEIS/DESCRIPTION | 6
RSEIS-2.4-1/RSEIS/R/JGET.seis.R | 4
RSEIS-2.4-1/RSEIS/R/JSAC.seis.R | 35 ++-
RSEIS-2.4-1/RSEIS/R/JSEGY.seis.R | 107 +++++++++-
RSEIS-2.4-1/RSEIS/R/MTM.drive.R | 10
RSEIS-2.4-1/RSEIS/R/Mine.seis.R | 16 +
RSEIS-2.4-1/RSEIS/R/PDE2list.R |only
RSEIS-2.4-1/RSEIS/R/PICK.GEN.R | 341 ++++++++++-----------------------
RSEIS-2.4-1/RSEIS/R/PLOT.ALLPX.R | 42 +++-
RSEIS-2.4-1/RSEIS/R/Zdate.R | 5
RSEIS-2.4-1/RSEIS/R/blankevol.R | 17 -
RSEIS-2.4-1/RSEIS/R/distaz.R | 159 ++++++++++-----
RSEIS-2.4-1/RSEIS/R/editDB.R |only
RSEIS-2.4-1/RSEIS/R/getseis24.R | 8
RSEIS-2.4-1/RSEIS/R/jitter.lab.R |only
RSEIS-2.4-1/RSEIS/R/longfft.R |only
RSEIS-2.4-1/RSEIS/R/longpstart.R |only
RSEIS-2.4-1/RSEIS/R/longreset.R |only
RSEIS-2.4-1/RSEIS/R/plotJGET.R |only
RSEIS-2.4-1/RSEIS/R/textrect.R |only
RSEIS-2.4-1/RSEIS/inst/doc/hodo.pdf |binary
RSEIS-2.4-1/RSEIS/inst/doc/rseis.pdf |binary
RSEIS-2.4-1/RSEIS/man/GAZI.Rd | 6
RSEIS-2.4-1/RSEIS/man/JGET.seis.Rd | 28 ++
RSEIS-2.4-1/RSEIS/man/JSAC.seis.Rd | 46 ++++
RSEIS-2.4-1/RSEIS/man/NEWPLOT.WPX.Rd | 2
RSEIS-2.4-1/RSEIS/man/PDE2list.Rd |only
RSEIS-2.4-1/RSEIS/man/RSEIS-package.Rd | 3
RSEIS-2.4-1/RSEIS/man/Ray.time1D.Rd |only
RSEIS-2.4-1/RSEIS/man/Zdate.Rd | 7
RSEIS-2.4-1/RSEIS/man/distaz.Rd | 81 +++++--
RSEIS-2.4-1/RSEIS/man/editDB.Rd |only
RSEIS-2.4-1/RSEIS/man/getseis24.Rd | 11 -
RSEIS-2.4-1/RSEIS/man/grotseis.Rd | 5
RSEIS-2.4-1/RSEIS/man/jitter.lab.Rd |only
RSEIS-2.4-1/RSEIS/man/longfft.Rd |only
RSEIS-2.4-1/RSEIS/man/plotJGET.Rd |only
RSEIS-2.4-1/RSEIS/man/plotevol.Rd | 3
RSEIS-2.4-1/RSEIS/man/textrect.Rd |only
RSEIS-2.4-1/RSEIS/man/travel.time1D.Rd | 17 -
48 files changed, 594 insertions(+), 365 deletions(-)
Title: R interface to the MySQL database
Diff between RMySQL versions 0.7-4 dated 2009-04-14 and 0.7-5 dated 2010-07-24
Description: Database interface and MySQL driver for R. This version
complies with the database interface definition as implemented
in the package DBI 0.2-2.
Author: David A. James and Saikat DebRoy
Maintainer: Jeffrey Horner
RMySQL-0.7-4/RMySQL/src/Makevars.win |only
RMySQL-0.7-5/RMySQL/DESCRIPTION | 10 +++++-----
RMySQL-0.7-5/RMySQL/configure.win | 11 +++++++----
RMySQL-0.7-5/RMySQL/man/MySQL.Rd | 3 +--
RMySQL-0.7-5/RMySQL/man/RMySQL-package.Rd | 2 --
RMySQL-0.7-5/RMySQL/man/dbEscapeStrings-methods.Rd | 2 +-
RMySQL-0.7-5/RMySQL/man/dbReadTable-methods.Rd | 6 +++---
RMySQL-0.7-5/RMySQL/man/safe.write.Rd | 6 +++---
RMySQL-0.7-5/RMySQL/src/Makevars.win32 |only
RMySQL-0.7-5/RMySQL/src/Makevars.win64 |only
RMySQL-0.7-5/RMySQL/src/RS-DBI.h | 15 +++++++--------
RMySQL-0.7-5/RMySQL/src/RS-MySQL.h | 4 ++--
12 files changed, 29 insertions(+), 30 deletions(-)
Title: Tools to analyse RFLP data
Diff between RFLPtools versions 1.2 dated 2010-06-10 and 1.3 dated 2010-07-24
Description: RFLPtools provides functions to analyse DNA fragment
samples (i.e. derived from RFLP-analysis) and standalone BLAST
report files (i.e. DNA sequence analysis).
Author: Fabienne Flessa, Alexandra Kehl, Matthias Kohl
Maintainer: Matthias Kohl
RFLPtools-1.2/RFLPtools/R/Gendist.R |only
RFLPtools-1.3/RFLPtools/DESCRIPTION | 8 ++++----
RFLPtools-1.3/RFLPtools/NAMESPACE | 1 +
RFLPtools-1.3/RFLPtools/NEWS | 6 ++++++
RFLPtools-1.3/RFLPtools/R/diffDist.R |only
RFLPtools-1.3/RFLPtools/inst/doc/RFLPtools.pdf |binary
RFLPtools-1.3/RFLPtools/man/0RFLP-package.Rd | 4 ++--
RFLPtools-1.3/RFLPtools/man/diffDist.Rd |only
8 files changed, 13 insertions(+), 6 deletions(-)
Title: Easy handling of and access to files organized in structured
directories
Diff between R.filesets versions 0.8.2 dated 2010-06-03 and 0.8.3 dated 2010-07-24
Description: A file set refers to a set of files located in one or more
directories on the file system. This package provides classes
and methods to locate, setup, subset, navigate and iterate
suchs sets. The API is designed such that these classes can be
subsetted to provide a richer API for special file formats.
Moreover, a specific name format is defined such that filenames
and directories can be considered to have fullnames which
consists of a name followed by comma-separated tags. This adds
additional flexibility to identify file sets and individual
files. NOTE: This package's API should be considered to be in
an beta stage. Its main purpose is currently to support the
aroma.* packages, where it is one of the main core components;
if you decide to build on top of this package, please contact
the author first.
Author: Henrik Bengtsson
Maintainer: Henrik Bengtsson
DESCRIPTION | 14 ++++----
R/GenericDataFileSet.R | 38 ++++++++++++++++++---
R/GenericDataFileSetList.R | 66 ++++----------------------------------
inst/NEWS | 9 +++++
man/indexOf.GenericDataFileSet.Rd | 2 +
5 files changed, 57 insertions(+), 72 deletions(-)
Title: Power and Sample size based on two-one-sided-t-tests (TOST) for
BE studies
Diff between PowerTOST versions 0.5-1 dated 2010-05-10 and 0.6-2 dated 2010-07-24
Description: Contains functions to calculate power and sample size for
various study designs used for bioequivalence studies. See
known.designs for study designs covered. Moreover the package
contains functions for power and sample size based on
'expected' power in case of uncertain (estimated) variability.
Author: Detlew Labes
Maintainer: D. Labes
.project |only
DESCRIPTION | 12 ++++++------
NEWS |only
R/OwensQ.R | 2 +-
R/SampleSize.R | 26 +++++++++++++-------------
R/power.R | 30 +++++++++++++++---------------
inst |only
man/CV2se.Rd |only
man/OwensQ.Rd | 2 +-
man/PowerTOST-internal.Rd | 2 --
man/PowerTOST-package.Rd | 5 ++---
man/exppower.TOST.Rd | 31 ++++++++++++++++++-------------
man/expsampleN.TOST.Rd | 19 ++++++++++++++-----
man/power.TOST.Rd | 16 +++++++++++-----
man/sampleN.TOST.Rd | 28 +++++++++++++++-------------
15 files changed, 96 insertions(+), 77 deletions(-)
Title: Polynomials in R
Diff between PolynomF versions 0.93 dated 2008-06-03 and 0.94 dated 2010-07-24
Description: Implements univariate polynomial operations in R
Author: Bill Venables
Maintainer: Bill Venables
DESCRIPTION | 22 ++++++++++++----------
R/PolynomF.R | 29 +++++++++++++++++++++++++++--
2 files changed, 39 insertions(+), 12 deletions(-)
Title: Multi-model inference
Diff between MuMIn versions 0.12.2 dated 2010-05-28 and 0.13.3 dated 2010-07-24
Description: Model selection and model averaging based on information
criteria (AICc and alikes).
Author: Kamil Bartoń
Maintainer: Kamil Bartoń
MuMIn-0.12.2/MuMIn/R/Weights.R |only
MuMIn-0.12.2/MuMIn/R/formulaAllowed.R |only
MuMIn-0.12.2/MuMIn/R/getAICc.R |only
MuMIn-0.12.2/MuMIn/R/getQAIC.R |only
MuMIn-0.12.2/MuMIn/R/print.averaging.R |only
MuMIn-0.12.2/MuMIn/R/print.model.selection.R |only
MuMIn-0.12.2/MuMIn/README |only
MuMIn-0.12.2/MuMIn/man/functions.Rd |only
MuMIn-0.13.3/MuMIn/ChangeLog | 86 +++++--
MuMIn-0.13.3/MuMIn/DESCRIPTION | 17 -
MuMIn-0.13.3/MuMIn/NAMESPACE | 62 +++--
MuMIn-0.13.3/MuMIn/R/AICc.R | 18 +
MuMIn-0.13.3/MuMIn/R/QAIC.R | 10
MuMIn-0.13.3/MuMIn/R/coeffs.R | 7
MuMIn-0.13.3/MuMIn/R/dredge.R | 222 +++++++++++++-------
MuMIn-0.13.3/MuMIn/R/getAllTerms.R | 22 +-
MuMIn-0.13.3/MuMIn/R/misc.R |only
MuMIn-0.13.3/MuMIn/R/model.avg.R | 253 ++++++++++++++++-------
MuMIn-0.13.3/MuMIn/R/par.avg.R | 8
MuMIn-0.13.3/MuMIn/R/tTable.R | 22 --
MuMIn-0.13.3/MuMIn/man/AICc.Rd | 22 +-
MuMIn-0.13.3/MuMIn/man/MuMIn-package.Rd | 50 ++--
MuMIn-0.13.3/MuMIn/man/QAIC.Rd | 26 +-
MuMIn-0.13.3/MuMIn/man/cement.Rd | 30 +-
MuMIn-0.13.3/MuMIn/man/dredge.Rd | 214 ++++++++++++-------
MuMIn-0.13.3/MuMIn/man/get.models.Rd | 9
MuMIn-0.13.3/MuMIn/man/misc.Rd |only
MuMIn-0.13.3/MuMIn/man/model.avg.Rd | 153 +++++++++++--
MuMIn-0.13.3/MuMIn/man/par.avg.Rd | 10
MuMIn-0.13.3/MuMIn/man/subset.model.selection.Rd |only
30 files changed, 840 insertions(+), 401 deletions(-)
Title: Automating Mplus Model Estimation and Interpretation
Diff between MplusAutomation versions 0.3-2 dated 2010-05-22 and 0.3-3 dated 2010-07-24
More information about MplusAutomation at CRAN
Description: The MplusAutomation package leverages the flexibility of
the R language to automate latent variable model estimation and
interpretation using Mplus, a powerful latent variable modeling
program developed by Muthen and Muthen (www.statmodel.com).
Specifically, MplusAutomation provides routines for creating
related groups of models, running batches of models, and
extracting and tabulating model parameters and fit statistics.
Author: Michael Hallquist
Maintainer: Michael Hallquist
DESCRIPTION | 8
NEWS | 21 +
R/createModels.R | 25 +
R/parseOutput.R | 618 ++++++++++++++++++++++++++++++-----------
R/runModels.R | 182 +++++++-----
inst/doc/Vignette.Rnw | 135 ++++++++
inst/doc/Vignette.pdf |binary
man/MplusAutomation-package.Rd | 4
man/extractModelParameters.Rd | 64 +++-
man/extractModelSummaries.Rd | 9
man/runModels.Rd | 18 -
11 files changed, 809 insertions(+), 275 deletions(-)
Permanent link
Title: Design and Analysis of Dose-Finding Studies (see also
DoseFinding package)
Diff between MCPMod versions 1.0-6 dated 2010-02-09 and 1.0-7 dated 2010-07-24
Description: This package implements a methodology for the design and
analysis of dose-response studies that combines aspects of
multiple comparison procedures and modeling approaches (Bretz,
Pinheiro and Branson, 2005, Biometrics 61, 738-748). The
package provides tools for the analysis of dose finding trials
as well as a variety of tools necessary to plan a trial to be
conducted with the MCPMod methodology. ***NOTE*** The MCPMod
package will not be further developed, all future development
of the MCP-Mod methodology will be done in the DoseFinding
R-package. ***NOTE***
Author: Bjoern Bornkamp, Jose Pinheiro and Frank Bretz
Maintainer: Bjoern Bornkamp
MCPMod-1.0-6/MCPMod/inst/doc/MCPMod.Rnw |only
MCPMod-1.0-6/MCPMod/inst/doc/MCPMod.bib |only
MCPMod-1.0-6/MCPMod/inst/doc/Rplots.pdf |only
MCPMod-1.0-6/MCPMod/tests/MMTests.Rout.save |only
MCPMod-1.0-7/MCPMod/ChangeLog | 9 +++++++++
MCPMod-1.0-7/MCPMod/DESCRIPTION | 17 ++++++++---------
MCPMod-1.0-7/MCPMod/R/planMCPMod.R | 2 +-
MCPMod-1.0-7/MCPMod/ToDo | 8 ++------
MCPMod-1.0-7/MCPMod/inst/doc/MCPMod.pdf |binary
MCPMod-1.0-7/MCPMod/man/MCPMod-package.Rd | 4 ++--
MCPMod-1.0-7/MCPMod/man/mvtnorm.control.Rd | 2 +-
MCPMod-1.0-7/MCPMod/tests/MMTests.R | 10 +++++-----
12 files changed, 28 insertions(+), 24 deletions(-)
Title: Objective Bayesian Testing for the Hardy-Weinberg Equilibrium
Problem
Diff between HWEintrinsic versions 1.0 dated 2010-06-18 and 1.1 dated 2010-07-24
Description: This package implements the general (multiallelic)
Hardy-Weinberg equilibrium problem from an objective Bayesian
testing standpoint. This aim is achieved through the
identification of a class of priors specifically designed for
this testing problem. A class of intrinsic priors under the
full model is considered. This class is indexed by a tuning
quantity, the training sample size, as discussed in Consonni,
Moreno and Venturini (2010). These priors are objective,
satisfy Savage's continuity condition and have proved to behave
extremely well for many statistical testing problems.
Author: Sergio Venturini
Maintainer: Sergio Venturini
DESCRIPTION | 8 ++++----
R/AllClasses.R | 12 ++++++++----
R/HWEintrinsic.R | 6 +++---
3 files changed, 15 insertions(+), 11 deletions(-)
Title: Topographic and Geologic Mapping
Diff between GEOmap versions 1.5-4 dated 2010-02-18 and 1.5-8 dated 2010-07-24
Description: Set of routines for making Map Projections (forward and
inverse), Topographic Maps, Perspective plots, Geological Maps,
geological map symbols, geological databases, interactive
plotting and selection of focus regions.
Author: Jonathan M. Lees
Maintainer: Jonathan M. Lees
DESCRIPTION | 6 -
R/Ellipsoidal.Distance.R |only
R/ExplodeSymbols.R | 9 +-
R/GLOBE.ORTH.R |only
R/darc.R |only
R/distaz.R | 159 ++++++++++++++++++++++++++++----------------
R/getgreatarc.R | 2
R/inpoly.R | 17 ++--
R/merid.R |only
R/ortho.proj.R |only
R/paral.R |only
R/plotworldmap.R | 21 +++++
R/polyintern.R | 18 ++--
R/textrect.R |only
R/zebra.R | 33 +++++----
inst/doc/GEOmap.pdf |binary
man/Ellipsoidal.Distance.Rd |only
man/ExplodeSymbols.Rd | 29 +++++---
man/GEOmap-package.Rd | 2
man/GLOBE.ORTH.Rd |only
man/darc.Rd |only
man/distaz.Rd | 50 +++++++++++++
man/merid.Rd |only
man/ortho.proj.Rd |only
man/textrect.Rd |only
man/zebra.Rd | 10 +-
26 files changed, 249 insertions(+), 107 deletions(-)
Title: Factor Analysis for Multiple Testing (FAMT) : simultaneous tests
under dependence in high-dimensional data
Diff between FAMT versions 2.0 dated 2010-05-12 and 2.1 dated 2010-07-24
Description: The method proposed in this package takes into account the
impact of dependence on the multiple testing procedures for
high-throughput data as proposed by Friguet et al. (2009). The
common information shared by all the variables is modeled by a
factor analysis structure. The number of factors considered in
the model is chosen to reduce the false discoveries variance in
multiple tests. The model parameters are estimated thanks to an
EM algorithm. Adjusted tests statistics are derived, as well as
the associated p-values. The proportion of true null hypotheses
(an important parameter when controlling the false discovery
rate) is also estimated from the FAMT model. Graphics are
proposed to interpret and describe the factors.
Author: David Causeur, Chloe Friguet, Magalie Houee-Bigot, Maela
Kloareg
Maintainer: David Causeur
FAMT-2.0/FAMT/R/as.FAMTdata.R |only
FAMT-2.1/FAMT/DESCRIPTION | 8 +-
FAMT-2.1/FAMT/R/asfamtdata.r |only
FAMT-2.1/FAMT/R/raw.pvalues.R | 64 ++++++++++-------
FAMT-2.1/FAMT/R/residualsFAMT.R | 57 +++++++++------
FAMT-2.1/FAMT/R/summaryFAMT.R | 139 ++++++++++++++++++++------------------
FAMT-2.1/FAMT/data/covariates.rda |binary
FAMT-2.1/FAMT/man/FAMT-package.Rd | 31 ++++----
FAMT-2.1/FAMT/man/annotations.Rd | 8 +-
FAMT-2.1/FAMT/man/as.FAMTdata.Rd | 33 ++++-----
FAMT-2.1/FAMT/man/covariates.Rd | 10 +-
FAMT-2.1/FAMT/man/defacto.Rd | 12 +--
FAMT-2.1/FAMT/man/emfa.Rd | 4 -
FAMT-2.1/FAMT/man/expression.Rd | 7 -
FAMT-2.1/FAMT/man/modelFAMT.Rd | 17 +++-
FAMT-2.1/FAMT/man/nbfactors.Rd | 6 -
FAMT-2.1/FAMT/man/pi0FAMT.Rd | 20 +++--
FAMT-2.1/FAMT/man/raw.pvalues.Rd | 6 -
FAMT-2.1/FAMT/man/summaryFAMT.Rd | 12 +--
19 files changed, 238 insertions(+), 196 deletions(-)
Title: Planning and Analyzing Dose Finding experiments
Diff between DoseFinding versions 0.2-1 dated 2010-05-28 and 0.2-2 dated 2010-07-24
Description: The DoseFinding package provides functions for the design
and analysis of dose-finding experiments (for example
pharmaceutical Phase II clinical trials). It provides functions
for: multiple contrast tests, fitting non-linear dose-response
models, calculating optimal designs and an implementation of
the MCPMod methodology. Currently only normally distributed
homoscedastic endpoints are supported.
Author: Bjoern Bornkamp, Jose Pinheiro, Frank Bretz
Maintainer: Bjoern Bornkamp
ChangeLog | 9 +++++++++
DESCRIPTION | 8 ++++----
NAMESPACE | 2 +-
R/fitModel.R | 15 +++++++++++++--
R/optDesign.R | 32 ++++++++++++++++++++++++++------
R/planMCPMod.R | 2 +-
man/DoseFinding-package.Rd | 4 ++--
man/MCPMod.Rd | 35 ++++++++++++++++++-----------------
man/calcOptDesign.Rd | 9 ++++++---
man/fitDRModel.Rd | 4 +++-
man/logLik.DRMod.Rd |only
man/mvtnorm.control.Rd | 2 +-
12 files changed, 84 insertions(+), 38 deletions(-)
Title: Disease Analysis toolkit for gene set; Computation of
similarities between DO terms and disease similarity between
gene products; DO enrichment analysis; Disease Ontology
annotation
Diff between DOSim versions 1.1 dated 2010-06-21 and 1.2 dated 2010-07-24
Description: This package implements several functions useful for
computing similarities between DO terms and gene products.
Moreover it allows for conducting DO enrichment analysis and
provide basic disease ontology annotation.
Author: Jiang Li
Maintainer: Jiang Li
DESCRIPTION | 23 ++++----
R/DOEnrichment.R | 101 +++++++++++++++++++++++++++++++++++---
inst/doc/DOSim.Rnw | 122 +++++++++++++++++++++++++++++-----------------
inst/doc/DOSim.pdf |binary
man/DOEnrichment.Rd | 44 +++++++++++-----
man/DOSim-package.Rd | 8 +--
man/DOSimEnv.Rd | 11 ----
man/filterDO.Rd | 8 +--
man/getAncestors.Rd | 12 +---
man/getChildren.Rd | 12 +---
man/getDOGraph.Rd | 16 +-----
man/getDisjCommAnc.Rd | 15 +----
man/getDoAnno.Rd | 12 +---
man/getDoTerm.Rd | 12 +---
man/getMinimumSubsumer.Rd | 6 --
man/getOffsprings.Rd | 12 +---
man/getParents.Rd | 12 +---
man/getShortestPath.Rd | 12 +---
man/internal.Rd | 2
man/plotCluster.Rd | 14 +----
20 files changed, 255 insertions(+), 199 deletions(-)
Title: Chemical Thermodynamics and Activity Diagrams
Diff between CHNOSZ versions 0.9 dated 2009-11-30 and 0.9-1 dated 2010-07-24
Description: Calculation of the standard molal thermodynamic properties
and chemical affinities of reactions between and among
minerals, inorganic, organic, and/or biomolecular aqueous and
crystalline species. Incorporation of an extensive database of
thermodynamic properties of species and algorithms for
computing the standard thermodynamic properties of neutral and
ionized proteins from amino acid group contributions.
Generation of chemical speciation and predominance diagrams for
stable and metastable equilibrium in open systems as a function
of temperature, pressure, and chemical activities or fugacities
of basis species.
Author: Jeffrey M. Dick
Maintainer: Jeffrey M. Dick
CHNOSZ-0.9-1/CHNOSZ/DESCRIPTION | 8
CHNOSZ-0.9-1/CHNOSZ/R/affinity.R | 197 ------
CHNOSZ-0.9-1/CHNOSZ/R/buffer.R |only
CHNOSZ-0.9-1/CHNOSZ/R/diagram.R | 285 +--------
CHNOSZ-0.9-1/CHNOSZ/R/examples.R |only
CHNOSZ-0.9-1/CHNOSZ/R/info.R | 5
CHNOSZ-0.9-1/CHNOSZ/R/protein.R | 81 --
CHNOSZ-0.9-1/CHNOSZ/R/revisit.R |only
CHNOSZ-0.9-1/CHNOSZ/R/species.R | 6
CHNOSZ-0.9-1/CHNOSZ/R/taxonomy.R |only
CHNOSZ-0.9-1/CHNOSZ/R/util.args.R |only
CHNOSZ-0.9-1/CHNOSZ/R/util.array.R |only
CHNOSZ-0.9-1/CHNOSZ/R/util.blast.R |only
CHNOSZ-0.9-1/CHNOSZ/R/util.character.R |only
CHNOSZ-0.9-1/CHNOSZ/R/util.data.R |only
CHNOSZ-0.9-1/CHNOSZ/R/util.fasta.R |only
CHNOSZ-0.9-1/CHNOSZ/R/util.formula.R |only
CHNOSZ-0.9-1/CHNOSZ/R/util.list.R |only
CHNOSZ-0.9-1/CHNOSZ/R/util.misc.R |only
CHNOSZ-0.9-1/CHNOSZ/R/util.plot.R |only
CHNOSZ-0.9-1/CHNOSZ/R/util.seq.R |only
CHNOSZ-0.9-1/CHNOSZ/R/util.units.R |only
CHNOSZ-0.9-1/CHNOSZ/R/water.R | 16
CHNOSZ-0.9-1/CHNOSZ/data/OBIGT.csv | 480 +++-------------
CHNOSZ-0.9-1/CHNOSZ/data/check.csv |only
CHNOSZ-0.9-1/CHNOSZ/data/opt.csv | 4
CHNOSZ-0.9-1/CHNOSZ/data/source.csv | 9
CHNOSZ-0.9-1/CHNOSZ/inst/NEWS | 18
CHNOSZ-0.9-1/CHNOSZ/inst/OBIGT-2.csv |only
CHNOSZ-0.9-1/CHNOSZ/inst/bisonN_vs_refseq39.blastp |only
CHNOSZ-0.9-1/CHNOSZ/inst/bisonP_vs_refseq39.blastp |only
CHNOSZ-0.9-1/CHNOSZ/inst/bisonR_vs_refseq39.blastp |only
CHNOSZ-0.9-1/CHNOSZ/inst/doc/index.html | 8
CHNOSZ-0.9-1/CHNOSZ/inst/gi.taxid.txt |only
CHNOSZ-0.9-1/CHNOSZ/inst/names.dmp |only
CHNOSZ-0.9-1/CHNOSZ/inst/nodes.dmp |only
CHNOSZ-0.9-1/CHNOSZ/inst/taxid.phylum.csv |only
CHNOSZ-0.9-1/CHNOSZ/man/CHNOSZ-package.Rd | 2
CHNOSZ-0.9-1/CHNOSZ/man/affinity.Rd | 3
CHNOSZ-0.9-1/CHNOSZ/man/buffer.Rd | 63 +-
CHNOSZ-0.9-1/CHNOSZ/man/data.Rd | 65 --
CHNOSZ-0.9-1/CHNOSZ/man/diagram.Rd | 600 ++++++++-------------
CHNOSZ-0.9-1/CHNOSZ/man/examples.Rd |only
CHNOSZ-0.9-1/CHNOSZ/man/get.protein.Rd | 81 +-
CHNOSZ-0.9-1/CHNOSZ/man/ionize.Rd | 19
CHNOSZ-0.9-1/CHNOSZ/man/protein.Rd | 3
CHNOSZ-0.9-1/CHNOSZ/man/revisit.Rd | 27
CHNOSZ-0.9-1/CHNOSZ/man/species.Rd | 3
CHNOSZ-0.9-1/CHNOSZ/man/subcrt.Rd | 3
CHNOSZ-0.9-1/CHNOSZ/man/taxonomy.Rd |only
CHNOSZ-0.9-1/CHNOSZ/man/transfer.Rd | 3
CHNOSZ-0.9-1/CHNOSZ/man/util.args.Rd |only
CHNOSZ-0.9-1/CHNOSZ/man/util.array.Rd |only
CHNOSZ-0.9-1/CHNOSZ/man/util.blast.Rd |only
CHNOSZ-0.9-1/CHNOSZ/man/util.character.Rd |only
CHNOSZ-0.9-1/CHNOSZ/man/util.data.Rd |only
CHNOSZ-0.9-1/CHNOSZ/man/util.fasta.Rd |only
CHNOSZ-0.9-1/CHNOSZ/man/util.formula.Rd |only
CHNOSZ-0.9-1/CHNOSZ/man/util.list.Rd |only
CHNOSZ-0.9-1/CHNOSZ/man/util.misc.Rd |only
CHNOSZ-0.9-1/CHNOSZ/man/util.plot.Rd |only
CHNOSZ-0.9-1/CHNOSZ/man/util.seq.Rd |only
CHNOSZ-0.9-1/CHNOSZ/man/util.units.Rd |only
CHNOSZ-0.9-1/CHNOSZ/man/water.Rd | 88 +--
CHNOSZ-0.9/CHNOSZ/R/thermo.R |only
CHNOSZ-0.9/CHNOSZ/inst/doc/check.csv |only
CHNOSZ-0.9/CHNOSZ/inst/doc/pie.Rnw |only
CHNOSZ-0.9/CHNOSZ/inst/doc/pie.pdf |only
CHNOSZ-0.9/CHNOSZ/man/nuts.Rd |only
CHNOSZ-0.9/CHNOSZ/man/utilities.Rd |only
70 files changed, 605 insertions(+), 1472 deletions(-)
Title: Bayesian Model Averaging using Bayesian Adaptive Sampling
Diff between BAS versions 0.85 dated 2010-04-29 and 0.90 dated 2010-07-24
Description: Package for Bayesian Model Averaging in linear models
using stochastic or deterministic sampling without replacement
from posterior distributions. Prior distributions on
coefficients are from Zellner's g-prior or mixtures of g-priors
corresponding to the Zellner-Siow Cauchy Priors or the Liang et
al hyper-g priors (JASA 2008). Other model selection criterian
include AIC and BIC. Sampling probabilities may be updated
based on the sampled models. Allows uniform or beta-binomial
prior distributions on models.
Author: Merlise Clyde
Maintainer: Merlise Clyde
DESCRIPTION | 8 +++---
INDEX | 2 +
R/bas.R | 58 ++++++++++++++++----------------------------
R/glm-fit.R |only
R/predict.bma.R | 4 ++-
man/BAS-package.Rd | 18 +++++++------
man/bas.Rd | 69 ++++++++++++++++++++++++++++-------------------------
man/bayesglm.Rd |only
src/bayesglm.c | 49 ++++++++++++++++++++++++++-----------
src/bayesreg.c | 14 ++++++----
src/family.c | 47 +++++++++++++++++++++++++++++++++---
src/family.h | 1
src/sampling.h | 5 ++-
13 files changed, 168 insertions(+), 107 deletions(-)
Title: Functions for analysis of fMRI datasets stored in the ANALYZE or
NIFTI format.
Diff between AnalyzeFMRI versions 1.1-11 dated 2009-10-19 and 1.1-12 dated 2010-07-24
Description: Functions for I/O, visualisation and analysis of
functional Magnetic Resonance Imaging (fMRI) datasets stored in
the ANALYZE or NIFTI format.
Author: J L Marchini
Maintainer: P Lafaye de Micheaux
AnalyzeFMRI-1.1-11/AnalyzeFMRI/src/lsame.f |only
AnalyzeFMRI-1.1-11/AnalyzeFMRI/src/slamc.f |only
AnalyzeFMRI-1.1-12/AnalyzeFMRI/DESCRIPTION | 8
AnalyzeFMRI-1.1-12/AnalyzeFMRI/INDEX | 157 ++----
AnalyzeFMRI-1.1-12/AnalyzeFMRI/R/analyzeFMRI.R | 4
AnalyzeFMRI-1.1-12/AnalyzeFMRI/R/niftiFMRI.R | 257 +++++++---
AnalyzeFMRI-1.1-12/AnalyzeFMRI/TODO |only
AnalyzeFMRI-1.1-12/AnalyzeFMRI/inst/CITATION |only
AnalyzeFMRI-1.1-12/AnalyzeFMRI/inst/HISTORY | 25
AnalyzeFMRI-1.1-12/AnalyzeFMRI/inst/plot.volume.gui.R | 97 ++-
AnalyzeFMRI-1.1-12/AnalyzeFMRI/man/Q2R.Rd | 5
AnalyzeFMRI-1.1-12/AnalyzeFMRI/man/R2Q.Rd | 10
AnalyzeFMRI-1.1-12/AnalyzeFMRI/man/diminfo2fps.Rd | 25
AnalyzeFMRI-1.1-12/AnalyzeFMRI/man/f.basic.hdr.list.create.Rd | 6
AnalyzeFMRI-1.1-12/AnalyzeFMRI/man/f.read.analyze.header.Rd | 105 ++--
AnalyzeFMRI-1.1-12/AnalyzeFMRI/man/f.read.header.Rd | 4
AnalyzeFMRI-1.1-12/AnalyzeFMRI/man/f.read.nifti.header.Rd | 43 +
AnalyzeFMRI-1.1-12/AnalyzeFMRI/man/f.read.nifti.slice.Rd | 4
AnalyzeFMRI-1.1-12/AnalyzeFMRI/man/f.read.nifti.slice.at.all.timepoints.Rd | 4
AnalyzeFMRI-1.1-12/AnalyzeFMRI/man/f.read.nifti.tpt.Rd | 4
AnalyzeFMRI-1.1-12/AnalyzeFMRI/man/f.read.nifti.ts.Rd | 4
AnalyzeFMRI-1.1-12/AnalyzeFMRI/man/fourDto2D.Rd | 3
AnalyzeFMRI-1.1-12/AnalyzeFMRI/man/fps2diminfo.Rd | 26 -
AnalyzeFMRI-1.1-12/AnalyzeFMRI/man/magicfield.Rd | 2
AnalyzeFMRI-1.1-12/AnalyzeFMRI/man/mat34.to.TRSZ.Rd | 9
AnalyzeFMRI-1.1-12/AnalyzeFMRI/man/mat34.to.TZSR.Rd | 9
AnalyzeFMRI-1.1-12/AnalyzeFMRI/man/nifti.quatern.to.mat44.Rd | 4
AnalyzeFMRI-1.1-12/AnalyzeFMRI/man/st2xyzt.Rd | 18
AnalyzeFMRI-1.1-12/AnalyzeFMRI/man/threeDto4D.Rd | 7
AnalyzeFMRI-1.1-12/AnalyzeFMRI/man/xyzt2st.Rd | 18
AnalyzeFMRI-1.1-12/AnalyzeFMRI/src/niftiFMRI.c | 65 +-
31 files changed, 620 insertions(+), 303 deletions(-)
Title: Constrained and Unconstrained Zero-Inflated Generalized Additive
Models with Model Selection Criterion
Diff between COZIGAM versions 2.0-2 dated 2009-07-21 and 2.0-3 dated 2010-07-24
Description: Constrained and Unconstrained Zero-Inflated Generalized
Additive Models (ZIGAM) fitting with associated model plotting,
prediction and selection.
Author: Hai Liu
Maintainer: Hai Liu
DESCRIPTION | 12 ++++++------
inst |only
man/COZIGAM-package.rd | 6 +++---
man/COZIGAM.cts.rd | 5 ++---
man/COZIGAM.dis.rd | 7 +++----
man/PCOZIGAM.cts.rd | 5 ++---
man/PCOZIGAM.dis.rd | 7 +++----
man/ZIGAM.cts.rd | 5 ++---
man/ZIGAM.dis.rd | 5 ++---
man/cozigam.rd | 8 ++++----
man/disgam.rd | 10 +++++-----
man/predict.cozigam.rd | 7 +++----
man/zigam.rd | 8 ++++----
13 files changed, 39 insertions(+), 46 deletions(-)