Sun, 25 Jul 2010

Package npRmpi updated to version 0.40-3 with previous version 0.40-2 dated 2010-06-10

Title: Parallel nonparametric kernel smoothing methods for mixed data types
Description: This package provides a variety of nonparametric (and semiparametric) kernel methods that seamlessly handle a mix of continuous, unordered, and ordered factor data types. This package is a parallel implementation of the np package based on the MPI specification that incorporates the Rmpi package (Hao Yu ) with minor modifications and we are extremely grateful to Hao Yu for his contributions to the R community. We would like to gratefully acknowledge support from the Natural Sciences and Engineering Research Council of Canada (NSERC:www.nserc.ca), the Social Sciences and Humanities Research Council of Canada (SSHRC:www.sshrc.ca), and the Shared Hierarchical Academic Research Computing Network (SHARCNET:www.sharcnet.ca).
Author: Tristen Hayfield , Jeffrey S. Racine
Maintainer: Jeffrey S. Racine

Diff between npRmpi versions 0.40-2 dated 2010-06-10 and 0.40-3 dated 2010-07-25

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Package MOCCA updated to version 1.1 with previous version 1.0 dated 2010-06-28

Title: Multi-objective optimization for collecting cluster alternatives
Description: This package provides methods to analyze cluster alternatives based on multi-objective optimization of cluster validation indices.
Author: Johann Kraus
Maintainer: Hans Kestler

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Package RCurl updated to version 1.4-3 with previous version 1.4-2 dated 2010-05-06

Title: General network (HTTP/FTP/...) client interface for R
Description: The package allows one to compose general HTTP requests and provides convenient functions to fetch URIs, get & post forms, etc. and process the results returned by the Web server. This provides a great deal of control over the HTTP/FTP/... connection and the form of the request while providing a higher-level interface than is available just using R socket connections. Additionally, the underlying implementation is robust and extensive, supporting FTP/FTPS/TFTP (uploads and downloads), SSL/HTTPS, telnet, dict, ldap, and also supports cookies, redirects, authentication, etc.
Author: Duncan Temple Lang
Maintainer: Duncan Temple Lang

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Package remix updated to version 0.6 with previous version 0.5-2 dated 2010-06-04

Title: Remix your data
Description: remix provides remix, a quick and easy function for describing datasets. It can be view as a mix of cast (in package reshape) and summary.formula (in package Hmisc).
Author: David Hajage
Maintainer: David Hajage

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Package mhsmm updated to version 0.3.6 with previous version 0.3.5 dated 2010-05-19

Title: Parameter estimation and prediction for hidden Markov and semi-Markov models for data with multiple observation sequences.
Description: Parameter estimation and prediction for hidden Markov and semi-Markov models for data with multiple observation sequences. Suitable for equidistant time series data, with multivariate and/or missing data.
Author: Jared O'Connell , Søren Højsgaard
Maintainer: Jared O'Connell

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Package testthat updated to version 0.2 with previous version 0.1.1 dated 2009-11-30

Title: Testthat code. Tools to make testing fun :)
Description: A testing package specifically tailored for R that's fun, flexible and easy to set up.
Author: Hadley Wickham
Maintainer: Hadley Wickham

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Package simba updated to version 0.3-1 with previous version 0.2-5 dated 2007-08-27

Title: A Collection of functions for similarity analysis of vegetation data
Description: Besides a function for the calculation of similarity measures with binary data (for instance presence/absence species data) the package contains some simple wrapper functions for reshaping species lists into matrices and vice versa and some other functions for further processing of similarity data (Mantel-like permutation procedures) as well as some other useful stuff.
Author: Gerald Jurasinski , with contributions from Vroni Retzer
Maintainer: Gerald Jurasinski

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Package randomForest updated to version 4.5-36 with previous version 4.5-35 dated 2010-06-21

Title: Breiman and Cutler's random forests for classification and regression
Description: Classification and regression based on a forest of trees using random inputs.
Author: Fortran original by Leo Breiman and Adele Cutler, R port by Andy Liaw and Matthew Wiener.
Maintainer: Andy Liaw

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Package list updated to version 1.1 with previous version 1.0 dated 2010-07-09

Title: Multivariate Statistical Analysis for the Item Count Technique
Description: list is a publicly available R package that allows researchers to conduct multivariate statistical analyses of survey data with the item count technique. This survey methodology is also known as the list experiment or the unmatched count technique and is an alternative to the commonly used randomized response method. The package implements the methods described in Imai (2010).
Author: Graeme Blair , Kosuke Imai
Maintainer: Graeme Blair

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Package frontier updated to version 0.996-10 with previous version 0.996-8 dated 2010-05-25

Title: Stochastic Frontier Analysis
Description: Maximum Likelihood Estimation of Stochastic Frontier Production and Cost Functions. Two specifications are available: the error components specification with time-varying efficiencies (Battese and Coelli, 1992) and a model specification in which the firm effects are directly influenced by a number of variables (Battese and Coelli, 1995).
Author: Tim Coelli, Arne Henningsen
Maintainer: Arne Henningsen

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Package aspace updated to version 2.3 with previous version 2.2 dated 2009-11-24

Title: A collection of functions for estimating centrographic statistics and computational geometries for spatial point patterns
Description: A collection of functions for computing centrographic statistics (e.g., standard distance, standard deviation ellipse, standard deviation box), and minimum convex polygons (MCP) for observations taken at point locations. A tool is also provided for converting geometric objects associated with the centrographic statistics, and MCPs into ESRI Shapefiles. Separate plotting functions have been developed for each measure.
Author: Randy Bui, Ron N. Buliung, Tarmo K. Remmel
Maintainer: Ron N. Buliung

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Package anesrake updated to version 0.4 with previous version 0.3 dated 2010-06-19

Title: ANES Raking Implementation and Weighted Statistics
Description: This package provides a comprehensive system for selecting variables and weighting data to match the specifications of the American National Election Studies. The package includes methods for identifying discrepant variables, raking data, and assessing the effects of the raking algorithm. It also allows automated re-raking if target variables fall outside identified bounds and allows greater user specification than other available raking algorithms. A variety of functions for producing simple weighted statistics are also included, such as weighted Pearson's correlations, Chi-Squareds, and t-tests.
Author: Josh Pasek
Maintainer: Josh Pasek

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Package UScensus2000 updated to version 0.08 with previous version 0.07 dated 2010-02-24

Title: US Census 2000 Suite of R Packages
Description: US Census 2000 shape files and additional demographic data from the SF1 100 percent files. This package contains a number of helper functions for the UScensus2000blk, UScensus2000blkgrp, UScensus2000tract, UScensus2000cdp packages.
Author: Zack W. Almquist
Maintainer: Zack W. Almquist

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 R/demographics.R            |  256 +++++++++++++++++++------------------
 R/install.blk.R             |only
 R/nameTofips.R              |only
 R/poly.clipper.R            |  298 ++++++++++++++++----------------------------
 R/zzz.R                     |    4 
 man/UScensus2000-package.Rd |    6 
 man/check.state.Rd          |    2 
 man/choropleth.Rd           |only
 man/choropleth.plot.Rd      |only
 man/choropleth.spplot.Rd    |only
 man/city.Rd                 |    2 
 man/demographics.Rd         |    2 
 man/install.blk.Rd          |only
 man/nameTofips.Rd           |only
 man/poly.clipper.Rd         |    2 
 21 files changed, 298 insertions(+), 379 deletions(-)

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New package RcmdrPlugin.SensoMineR with initial version 1.11
Package: RcmdrPlugin.SensoMineR
Type: Package
Title: Graphical User Interface for SensoMineR
Version: 1.11
Date: 2007-08-10
Author: F. Husson, J. Josse, S. Le
Encoding: latin1
Maintainer: Francois Husson
Depends: R (>= 2.5.0), SensoMineR, FactoMineR, Rcmdr, tcltk
Description: Rcmdr Plugin for the SensoMineR package
License: GPL (>= 2)
URL: http://sensominer.free.fr, http://www.agrocampus-rennes.fr/math/
LazyLoad: no
Packaged: 2010-07-19 09:04:04 UTC; PRI
Repository: CRAN
Date/Publication: 2010-07-25 11:06:09

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Package RcmdrPlugin.IPSUR updated to version 0.1-7 with previous version 0.1-6 dated 2009-12-28

Title: An IPSUR Plugin for the R Commander
Description: This package is an R Commander plugin that accompanies IPSUR, an Introduction to Probability and Statistics Using R.
Author: G. Jay Kerns with contributions by Theophilius Boye and Tyler Drombosky, adapted from the work of John Fox et al.
Maintainer: G. Jay Kerns

Diff between RcmdrPlugin.IPSUR versions 0.1-6 dated 2009-12-28 and 0.1-7 dated 2010-07-25

 DESCRIPTION        |   10 ++++-----
 inst/etc/menus.txt |   54 ++++++++++++++++++++++++++---------------------------
 2 files changed, 32 insertions(+), 32 deletions(-)

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Package LearnBayes updated to version 2.11 with previous version 2.0 dated 2009-01-05

Title: Functions for Learning Bayesian Inference
Description: LearnBayes contains a collection of functions helpful in learning the basic tenets of Bayesian statistical inference. It contains functions for summarizing basic one and two parameter posterior distributions and predictive distributions. It contains MCMC algorithms for summarizing posterior distributions defined by the user. It also contains functions for regression models, hierarchical models, Bayesian tests, and illustrations of Gibbs sampling.
Author: Jim Albert
Maintainer: Jim Albert

Diff between LearnBayes versions 2.0 dated 2009-01-05 and 2.11 dated 2010-07-25

 DESCRIPTION                 |   30 ++++++++++++++++++----------
 R/discrete.bayes.2.R        |only
 R/discrete.bayes.R          |only
 R/gibbs.R                   |    6 ++---
 R/indepmetrop.R             |    6 ++---
 R/laplace.R                 |    6 ++---
 R/normpostsim.R             |   47 ++++++++++++++++++++++++++++++++++++--------
 R/plot.bayes.R              |only
 R/plot.bayes2.R             |only
 R/print.bayes.R             |only
 R/prior.two.parameters.R    |only
 R/rwmetrop.R                |    6 ++---
 R/summary.bayes.R           |only
 man/discrete.bayes.2.Rd     |only
 man/discrete.bayes.Rd       |only
 man/gibbs.Rd                |   36 ++++++++++++++++-----------------
 man/histprior.Rd            |   38 +++++++++++++++++------------------
 man/indepmetrop.Rd          |    4 +--
 man/laplace.Rd              |    4 +--
 man/normpostsim.Rd          |   41 +++++++++++++++++++++-----------------
 man/prior.two.parameters.Rd |only
 man/rwmetrop.Rd             |    4 +--
 22 files changed, 137 insertions(+), 91 deletions(-)

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New package LogicForest with initial version 1.0
Package: LogicForest
Type: Package
Title: Logic Forest
Version: 1.0
Date: 2010-07-07
Author: Bethany Wolf
Maintainer: Bethany Wolf
Depends: LogicReg, CircStats, gtools, plotrix
Description: Classification ensemble based on logic regression trees. Used for classification of binary responses based on binary predictors and for identification of important variables and variable interactions predictive of a binary outcome.
License: GPL-2
LazyLoad: yes
Packaged: 2010-07-09 15:42:20 UTC; wolfb
Repository: CRAN
Date/Publication: 2010-07-25 11:06:03

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New package GPseq with initial version 0.1
Package: GPseq
Type: Package
Title: gpseq: Using the generalized Poisson distribution to model sequence read counts from high throughput sequencing experiments
Version: 0.1
Date: 2010-07-21
Author: Sudeep Srivastava, Liang Chen
Maintainer: Sudeep Srivastava
Description: Some functions for modeling sequence read counts as a generalized poisson model and to use this model for detecting differentially expressed genes in different conditions and differentially spliced exons.
Depends: R (>= 2.10.1)
License: GPL-2
LazyLoad: yes
Packaged: 2010-07-22 00:04:48 UTC; sudeepsr
Repository: CRAN
Date/Publication: 2010-07-25 11:05:48

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