Title: Functions for calculating tolerance intervals
Diff between tolerance versions 0.2.1 dated 2010-05-16 and 0.2.2 dated 2010-07-29
Description: Tolerance limits provide the limits between which we can
expect to find a specified proportion of a population with a
given level of confidence. This package provides functions for
estimating tolerance limits for various distributions.
Plotting is also available for tolerance limits of continuous
random variables.
Author: Derek S. Young
Maintainer: Derek S. Young
DESCRIPTION | 8 +--
NEWS | 107 +++++++++++++++++++++++++----------------------
inst |only
man/nonparregtolint.Rd | 4 +
man/nporder.Rd | 4 -
man/tolerance.package.Rd | 6 +-
6 files changed, 72 insertions(+), 57 deletions(-)
Title: Bayesian graphical models using MCMC
Diff between rjags versions 2.1.0-5 dated 2010-06-23 and 2.1.0-6 dated 2010-07-29
Description: Interface to the JAGS MCMC library
Author: Martyn Plummer
Maintainer: Martyn Plummer
DESCRIPTION | 8 ++++----
README | 5 +++--
src/Makevars.win | 4 ++--
src/jags.cc | 2 ++
4 files changed, 11 insertions(+), 8 deletions(-)
Title: Exact or Asymptotic permutation tests
Diff between perm versions 0.9-9.5 dated 2010-02-03 and 1.0-0.0 dated 2010-07-29
Description: Perform Exact or Asymptotic permutation tests
Author: Michael Fay
Maintainer: Michael Fay
DESCRIPTION | 8 +++---
NEWS | 14 ++++++++++++
R/algorithms.R | 2 +
R/permControl.R | 11 +++++++--
R/permTREND.R | 47 ++++++++++++++++++++++++++++++++---------
R/permTS.R | 38 ++++++++++++++++++++++++++-------
inst |only
man/perm-package.Rd | 12 +++++++---
man/perm.Rd | 22 ++++++++++++-------
man/permControl.Rd | 19 +++++++++++++++-
tests/precision.problem.R | 4 +--
tests/wilcoxon.kruskal.trend.R | 6 ++---
12 files changed, 142 insertions(+), 41 deletions(-)
Title: Weighted Logrank Tests and NPMLE for interval censored data
Diff between interval versions 0.9-9.6 dated 2010-03-11 and 1.0-0.0 dated 2010-07-29
Description: Functions to fit nonparametric survival curves, plot them,
and perform logrank or Wilcoxon type tests.
Author: Michael P. Fay
Maintainer: Michael P. Fay
interval-0.9-9.6/interval/inst/doc/intervalPaper.Rnw |only
interval-0.9-9.6/interval/inst/doc/intervalPaper.dvi |only
interval-0.9-9.6/interval/inst/doc/intervalPaper.pdf |only
interval-0.9-9.6/interval/inst/doc/jss.bst |only
interval-0.9-9.6/interval/inst/doc/jss.cls |only
interval-0.9-9.6/interval/inst/doc/jssNoName.cls |only
interval-0.9-9.6/interval/inst/doc/jsslogo.jpg |only
interval-1.0-0.0/interval/DESCRIPTION | 10
interval-1.0-0.0/interval/NEWS | 27 +
interval-1.0-0.0/interval/R/getsurv.R | 14
interval-1.0-0.0/interval/R/ictest.R | 77 +++--
interval-1.0-0.0/interval/R/initFuncs.R | 2
interval-1.0-0.0/interval/R/mControl.R | 11
interval-1.0-0.0/interval/R/methods.icfit.R | 3
interval-1.0-0.0/interval/inst/CITATION |only
interval-1.0-0.0/interval/inst/doc/Rplots.pdf | 45 +--
interval-1.0-0.0/interval/inst/doc/interval.bib | 213 +++++++++++----
interval-1.0-0.0/interval/inst/doc/intervalCensoring.Rnw |only
interval-1.0-0.0/interval/inst/doc/intervalCensoring.pdf |only
interval-1.0-0.0/interval/man/icfit.Rd | 4
interval-1.0-0.0/interval/man/ictest.Rd | 14
interval-1.0-0.0/interval/man/initcomputeMLE.Rd | 2
interval-1.0-0.0/interval/man/interval-package.Rd | 10
interval-1.0-0.0/interval/man/mControl.Rd | 3
24 files changed, 326 insertions(+), 109 deletions(-)
Title: Generalized Canonical Discriminant Analysis
Diff between candisc versions 0.5-16 dated 2009-11-19 and 0.5-18 dated 2010-07-29
Description: Functions for computing and graphing canonical
discriminant analyses.
Author: Michael Friendly and John Fox
Maintainer: Michael Friendly
DESCRIPTION | 10 +++++-----
R/candisc.R | 21 ++++++++++++++++-----
R/plot.candisc.R | 48 +++++++++++++++++++++++++++++-------------------
inst/CHANGES | 9 ++++++++-
man/HSB.Rd | 2 ++
man/Wolves.Rd | 4 ++--
man/candisc-package.Rd | 4 ++--
man/candisc.Rd | 7 +++++--
man/candiscList.Rd | 2 ++
man/heplot.candisc.Rd | 2 +-
10 files changed, 72 insertions(+), 37 deletions(-)
Title: Data sets from the history of statistics and data visualization
Diff between HistData versions 0.6-8 dated 2010-04-03 and 0.6-9 dated 2010-07-29
Description: The HistData package provides a collection of small data
sets that are interesting and important in the history of
statistics and data visualization. The goal of the package is
to make these available, both for instructional use and for
historical research. Some of these present interesting
challenges for graphics or analysis in R.
Author: Michael Friendly, with contributions by Stephane Dray, Hadley
Wickham
Maintainer: Michael Friendly
DESCRIPTION | 10 +++++-----
NEWS | 5 +++++
man/Galton.Rd | 8 +++++++-
man/HistData-package.Rd | 6 +++---
man/Snow.Rd | 3 ++-
5 files changed, 22 insertions(+), 10 deletions(-)
Title: A package dedicated to questionnaires
Diff between EnQuireR versions 0.09 dated 2009-06-14 and 0.10 dated 2010-07-29
Description: A package dedicated to questionnaires
Author: Fournier Gwenaelle, Cadoret Marine, Fournier Olivier, Le Poder
Francois, Bouche Jerome, Le Sebastien
Maintainer: Sebastien Le
DESCRIPTION | 6
R/ENMCA.R | 16 +-
R/MCA2.r | 343 ++++++++++++++++++++++++++----------------------
man/ENMCA.Rd | 5
man/ENbarplot.Rd | 1
man/ENdensity.Rd | 1
man/ENellipse.Rd | 1
man/ENlisib.Rd | 1
man/ENmarking.Rd | 1
man/EnquireR-package.Rd | 10 -
man/GRmarking.Rd | 1
man/XvsYbarplot.Rd | 1
man/chisq.desc.Rd | 1
man/p_inertia.Rd | 1
14 files changed, 219 insertions(+), 170 deletions(-)
Title: Initiation à la Statistique avec R
Diff between BioStatR versions 1.0.0 dated 2009-12-14 and 1.0.1 dated 2010-07-29
Description: This packages provides datasets for the book "Initiation à
la Statistique avec R", Dunod, 2010.
Author: Frederic Bertrand
Maintainer: Frederic Bertrand
BioStatR-1.0.0/BioStatR/CITATION |only
BioStatR-1.0.1/BioStatR/DESCRIPTION | 20 +++++++++++---------
BioStatR-1.0.1/BioStatR/INDEX | 13 +++++++++++++
BioStatR-1.0.1/BioStatR/NAMESPACE | 10 ++++++++--
BioStatR-1.0.1/BioStatR/NEWS | 3 ++-
BioStatR-1.0.1/BioStatR/R |only
BioStatR-1.0.1/BioStatR/data/Europe.RData |only
BioStatR-1.0.1/BioStatR/data/Extrait_Taille.RData |only
BioStatR-1.0.1/BioStatR/data/Mesures.RData |binary
BioStatR-1.0.1/BioStatR/data/Mesures5.RData |only
BioStatR-1.0.1/BioStatR/data/Quetelet.RData |only
BioStatR-1.0.1/BioStatR/inst |only
BioStatR-1.0.1/BioStatR/man/Europe.Rd |only
BioStatR-1.0.1/BioStatR/man/Extrait_Taille.Rd |only
BioStatR-1.0.1/BioStatR/man/Mesures.Rd | 3 ++-
BioStatR-1.0.1/BioStatR/man/Mesures5.Rd |only
BioStatR-1.0.1/BioStatR/man/Quetelet.Rd |only
BioStatR-1.0.1/BioStatR/man/binom.ci.Rd |only
BioStatR-1.0.1/BioStatR/man/cvar.Rd |only
BioStatR-1.0.1/BioStatR/man/eta2.Rd |only
BioStatR-1.0.1/BioStatR/man/panel.hist.Rd |only
BioStatR-1.0.1/BioStatR/man/plotcdf2.Rd |only
BioStatR-1.0.1/BioStatR/man/poi.ci.Rd |only
23 files changed, 36 insertions(+), 13 deletions(-)
Title: Seasonal analysis of health data
Diff between season versions 0.2-4 dated 2010-03-04 and 0.2-5 dated 2010-07-29
Description: Routines for the seasonal analysis of health data,
including regression models, time-stratified case-crossover,
plotting functions and residual checks.
Author: Adrian Barnett
Maintainer: Adrian Barnett
DESCRIPTION | 12 ++++++------
R/casecross.R | 4 +++-
R/flagleap.R | 13 +++++++++++--
R/monthglm.R | 17 ++++++-----------
man/flagleap-internal.Rd | 3 ++-
man/monthglm.Rd | 6 +-----
6 files changed, 29 insertions(+), 26 deletions(-)
Title: Analysis of High-Dimensional Categorical Data such as SNP Data
Diff between scrime versions 1.2.0 dated 2010-04-28 and 1.2.1 dated 2010-07-29
Description: Tools for the analysis of high-dimensional data
developed/implemented at the group "Statistical Complexity
Reduction In Molecular Epidemiology" (SCRIME). Main focus is on
SNP data. But most of the functions can also be applied to
other types of categorical data.
Author: Holger Schwender, with a contribution of Arno Fritsch
Maintainer: Holger Schwender
DESCRIPTION | 10 +++++-----
NAMESPACE | 4 +++-
R/colEpistatic.R |only
inst/CHANGES | 7 +++++++
man/colEpistatic.Rd |only
5 files changed, 15 insertions(+), 6 deletions(-)
Title: Response-surface analysis
Diff between rsm versions 1.31 dated 2009-12-20 and 1.40 dated 2010-07-29
Description: Provides functions to generate response-surface designs,
fit first- and second-order response-surface models, make
surface plots, obtain the path of steepest ascent, and do
canonical analysis.
Author: Russell V. Lenth
Maintainer: Russell V Lenth
DESCRIPTION | 8 ++--
R/ccd.R | 7 ++-
R/contour-lm.R | 78 ++++++++++++++++++++++++++++++++---------
R/rsm.R | 15 ++++---
inst/NEWS | 22 +++++++++++
inst/doc/rsm-plots-basics.pdf |only
inst/doc/rsm-plots-cont1.pdf |only
inst/doc/rsm-plots-cont2.pdf |only
inst/doc/rsm-plots-lessbas.pdf |only
inst/doc/rsm-plots-persp.pdf |only
inst/doc/rsm-plots.Rtex | 38 +++++++++----------
inst/doc/rsm-plots.pdf |binary
inst/doc/rsm-plots.tex |only
inst/doc/rsm.Rtex | 10 ++++-
inst/doc/rsm.pdf |binary
man/ccd.Rd | 16 ++++++--
man/contour.lm.Rd | 38 ++++++++-----------
man/rsm.Rd | 11 ++---
18 files changed, 163 insertions(+), 80 deletions(-)
Title: Tools for analyzing QTL experiments
Diff between qtl versions 1.16-6 dated 2010-05-25 and 1.17-39 dated 2010-07-29
Description: Analysis of experimental crosses to identify genes (called
quantitative trait loci, QTLs) contributing to variation in
quantitative traits.
Author: Karl W Broman
Maintainer: Karl W Broman
qtl-1.16-6/qtl/contrib/bin/mqmmain-mpi.cpp |only
qtl-1.16-6/qtl/contrib/bin/opt_main.cpp |only
qtl-1.16-6/qtl/contrib/bin/scripts/mqmmain.cpp |only
qtl-1.17-39/qtl/.Rbuildindex.2271 |only
qtl-1.17-39/qtl/.Rd2dvi63762 |only
qtl-1.17-39/qtl/.gitignore | 2
qtl-1.17-39/qtl/DESCRIPTION | 8
qtl-1.17-39/qtl/INDEX | 20
qtl-1.17-39/qtl/R/addqtl.R | 140 -
qtl-1.17-39/qtl/R/arithscan.R | 12
qtl-1.17-39/qtl/R/discan.R | 50
qtl-1.17-39/qtl/R/est.map.R | 44
qtl-1.17-39/qtl/R/est.rf.R | 29
qtl-1.17-39/qtl/R/fitqtl.R | 439 ++-
qtl-1.17-39/qtl/R/map_construction.R | 3
qtl-1.17-39/qtl/R/markerlrt.R |only
qtl-1.17-39/qtl/R/mqmcircleplot.R | 40
qtl-1.17-39/qtl/R/mqmpermutation.R | 1
qtl-1.17-39/qtl/R/mqmplots.R | 38
qtl-1.17-39/qtl/R/mqmscan.R | 80
qtl-1.17-39/qtl/R/mqmutil.R | 19
qtl-1.17-39/qtl/R/phyloqtl_scan.R |only
qtl-1.17-39/qtl/R/phyloqtl_sim.R |only
qtl-1.17-39/qtl/R/phyloqtl_util.R |only
qtl-1.17-39/qtl/R/plot.R | 112
qtl-1.17-39/qtl/R/plot.scanone.R | 11
qtl-1.17-39/qtl/R/plotperm.R | 269 --
qtl-1.17-39/qtl/R/read.cross.csv.R | 4
qtl-1.17-39/qtl/R/refineqtl.R | 26
qtl-1.17-39/qtl/R/replacemap.R | 105
qtl-1.17-39/qtl/R/ripple.R | 121
qtl-1.17-39/qtl/R/scanone.R | 48
qtl-1.17-39/qtl/R/scanqtl.R | 23
qtl-1.17-39/qtl/R/scantwo.R | 146 -
qtl-1.17-39/qtl/R/stepwiseqtl.R | 36
qtl-1.17-39/qtl/R/summary.cross.R | 38
qtl-1.17-39/qtl/R/summary.scanone.R | 22
qtl-1.17-39/qtl/R/summary.scantwo.R | 7
qtl-1.17-39/qtl/R/tryallpositions.R | 136 +
qtl-1.17-39/qtl/R/util.R | 274 ++
qtl-1.17-39/qtl/inst/MQM-TODO.txt | 4
qtl-1.17-39/qtl/inst/README.txt | 16
qtl-1.17-39/qtl/inst/STATUS.txt | 133 +
qtl-1.17-39/qtl/inst/TODO.txt | 183 -
qtl-1.17-39/qtl/inst/docs/MQM-tour.pdf | 3047 ++++++++++++-------------
qtl-1.17-39/qtl/man/a.starting.point.Rd | 9
qtl-1.17-39/qtl/man/addcovarint.Rd | 11
qtl-1.17-39/qtl/man/addint.Rd | 11
qtl-1.17-39/qtl/man/addpair.Rd | 11
qtl-1.17-39/qtl/man/addqtl.Rd | 10
qtl-1.17-39/qtl/man/allchrsplits.Rd |only
qtl-1.17-39/qtl/man/badorder.Rd | 1
qtl-1.17-39/qtl/man/bristle3.Rd | 1
qtl-1.17-39/qtl/man/bristleX.Rd | 1
qtl-1.17-39/qtl/man/calc.penalties.Rd | 2
qtl-1.17-39/qtl/man/checkAlleles.Rd | 7
qtl-1.17-39/qtl/man/drop.dupmarkers.Rd |only
qtl-1.17-39/qtl/man/drop.markers.Rd | 2
qtl-1.17-39/qtl/man/effectscan.Rd | 2
qtl-1.17-39/qtl/man/est.map.Rd | 17
qtl-1.17-39/qtl/man/fake.4way.Rd | 1
qtl-1.17-39/qtl/man/fake.bc.Rd | 1
qtl-1.17-39/qtl/man/fake.f2.Rd | 1
qtl-1.17-39/qtl/man/fitqtl.Rd | 39
qtl-1.17-39/qtl/man/geno.table.Rd | 25
qtl-1.17-39/qtl/man/hyper.Rd | 1
qtl-1.17-39/qtl/man/listeria.Rd | 1
qtl-1.17-39/qtl/man/map10.Rd | 1
qtl-1.17-39/qtl/man/markerlrt.Rd |only
qtl-1.17-39/qtl/man/max.scanPhyloQTL.Rd |only
qtl-1.17-39/qtl/man/mqmscan.Rd | 21
qtl-1.17-39/qtl/man/multitrait.Rd | 1
qtl-1.17-39/qtl/man/nqrank.Rd |only
qtl-1.17-39/qtl/man/plot.info.Rd | 19
qtl-1.17-39/qtl/man/plot.scanPhyloQTL.Rd |only
qtl-1.17-39/qtl/man/plot.scanone.Rd | 8
qtl-1.17-39/qtl/man/pull.markers.Rd |only
qtl-1.17-39/qtl/man/qtl-internal.Rd | 25
qtl-1.17-39/qtl/man/read.cross.Rd | 30
qtl-1.17-39/qtl/man/refineqtl.Rd | 11
qtl-1.17-39/qtl/man/ripple.Rd | 5
qtl-1.17-39/qtl/man/scanPhyloQTL.Rd |only
qtl-1.17-39/qtl/man/scanone.Rd | 14
qtl-1.17-39/qtl/man/scanoneboot.Rd | 2
qtl-1.17-39/qtl/man/scanqtl.Rd | 10
qtl-1.17-39/qtl/man/scantwo.Rd | 6
qtl-1.17-39/qtl/man/shiftmap.Rd |only
qtl-1.17-39/qtl/man/simPhyloQTL.Rd |only
qtl-1.17-39/qtl/man/stepwiseqtl.Rd | 15
qtl-1.17-39/qtl/man/summary.fitqtl.Rd | 12
qtl-1.17-39/qtl/man/summary.scanPhyloQTL.Rd |only
qtl-1.17-39/qtl/man/summary.scanone.Rd | 2
qtl-1.17-39/qtl/man/summary.scanoneperm.Rd | 2
qtl-1.17-39/qtl/man/summary.scantwo.old.Rd | 2
qtl-1.17-39/qtl/man/switchAlleles.Rd |only
qtl-1.17-39/qtl/src/discan_covar.c | 63
qtl-1.17-39/qtl/src/discan_covar.h | 17
qtl-1.17-39/qtl/src/fitqtl_hk.c | 3
qtl-1.17-39/qtl/src/fitqtl_hk_binary.c |only
qtl-1.17-39/qtl/src/fitqtl_hk_binary.h |only
qtl-1.17-39/qtl/src/fitqtl_imp.c | 6
qtl-1.17-39/qtl/src/fitqtl_imp_binary.c |only
qtl-1.17-39/qtl/src/fitqtl_imp_binary.h |only
qtl-1.17-39/qtl/src/hmm_4way.c | 6
qtl-1.17-39/qtl/src/hmm_bc.c | 6
qtl-1.17-39/qtl/src/hmm_bci.c | 6
qtl-1.17-39/qtl/src/hmm_f2.c | 32
qtl-1.17-39/qtl/src/hmm_f2i.c | 12
qtl-1.17-39/qtl/src/hmm_main.c | 6
qtl-1.17-39/qtl/src/hmm_main.h | 8
qtl-1.17-39/qtl/src/hmm_ri4self.c | 6
qtl-1.17-39/qtl/src/hmm_ri4sib.c | 8
qtl-1.17-39/qtl/src/hmm_ri8self.c | 10
qtl-1.17-39/qtl/src/hmm_ri8sib.c | 6
qtl-1.17-39/qtl/src/markerlrt.c |only
qtl-1.17-39/qtl/src/markerlrt.h |only
qtl-1.17-39/qtl/src/mqmscan.cpp | 5
qtl-1.17-39/qtl/src/scanone_em.c | 9
qtl-1.17-39/qtl/src/scanone_em.h | 7
qtl-1.17-39/qtl/src/scanone_em_covar.c | 105
qtl-1.17-39/qtl/src/scanone_em_covar.h | 22
qtl-1.17-39/qtl/src/scanone_hk.c | 31
qtl-1.17-39/qtl/src/scanone_hk.h | 11
qtl-1.17-39/qtl/src/scanone_hk_binary.c |only
qtl-1.17-39/qtl/src/scanone_hk_binary.h |only
qtl-1.17-39/qtl/src/scanone_imp.c | 33
qtl-1.17-39/qtl/src/scanone_imp.h | 13
qtl-1.17-39/qtl/src/scantwo_binary_hk.c |only
qtl-1.17-39/qtl/src/scantwo_binary_hk.h |only
qtl-1.17-39/qtl/tests/test_qtl.R | 18
130 files changed, 3903 insertions(+), 2572 deletions(-)
Title: Visualizing Tests in Multivariate Linear Models
Diff between heplots versions 0.8-11 dated 2009-12-23 and 0.9-3 dated 2010-07-29
Description: HE plot functions for visualizing hypothesis tests in
multivariate linear models. They represents
sums-of-squares-and-products matrices for linear hypotheses and
for error using ellipses (in two dimensions) and ellipsoids (in
three dimensions).
Author: John Fox, Michael Friendly, and Georges Monette
Maintainer: Michael Friendly
heplots-0.8-11/heplots/R/heplot.mlm.R |only
heplots-0.8-11/heplots/R/heplot3d.mlm.R |only
heplots-0.8-11/heplots/inst/CHANGES |only
heplots-0.9-3/heplots/DESCRIPTION | 19 -
heplots-0.9-3/heplots/NAMESPACE | 8
heplots-0.9-3/heplots/NEWS |only
heplots-0.9-3/heplots/R/arrow3d.R |only
heplots-0.9-3/heplots/R/ellipse3d.axes.R | 3
heplots-0.9-3/heplots/R/etasq.R |only
heplots-0.9-3/heplots/R/gsorth.R |only
heplots-0.9-3/heplots/R/heplot.R | 271 +++++++++++++++++++++++
heplots-0.9-3/heplots/R/heplot1d.R | 55 ++++
heplots-0.9-3/heplots/R/heplot3d.R | 317 ++++++++++++++++++++++++++++
heplots-0.9-3/heplots/R/mark.H0.R | 23 +-
heplots-0.9-3/heplots/R/pairs.mlm.R | 43 +++
heplots-0.9-3/heplots/R/statList.R |only
heplots-0.9-3/heplots/data/Adopted.RData |only
heplots-0.9-3/heplots/data/Headache.RData |only
heplots-0.9-3/heplots/data/RatWeight.RData |only
heplots-0.9-3/heplots/data/ReactTime.RData |only
heplots-0.9-3/heplots/demo/00Index | 2
heplots-0.9-3/heplots/demo/Big5.R |only
heplots-0.9-3/heplots/demo/OBK.R | 26 +-
heplots-0.9-3/heplots/man/Adopted.Rd |only
heplots-0.9-3/heplots/man/Headache.Rd |only
heplots-0.9-3/heplots/man/RatWeight.Rd |only
heplots-0.9-3/heplots/man/ReactTime.Rd |only
heplots-0.9-3/heplots/man/Rohwer.Rd | 3
heplots-0.9-3/heplots/man/RootStock.Rd | 8
heplots-0.9-3/heplots/man/VocabGrowth.Rd | 18 +
heplots-0.9-3/heplots/man/WeightLoss.Rd | 23 +-
heplots-0.9-3/heplots/man/arrow3d.Rd |only
heplots-0.9-3/heplots/man/ellipse3d.axes.Rd | 2
heplots-0.9-3/heplots/man/etasq.Rd |only
heplots-0.9-3/heplots/man/gsorth.Rd |only
heplots-0.9-3/heplots/man/heplot-package.Rd | 54 +++-
heplots-0.9-3/heplots/man/heplot.Rd | 72 +++++-
heplots-0.9-3/heplots/man/heplot1d.Rd | 33 ++
heplots-0.9-3/heplots/man/heplot3d.Rd | 32 ++
heplots-0.9-3/heplots/man/mark.H0.Rd | 32 +-
heplots-0.9-3/heplots/man/pairs.mlm.Rd | 26 ++
heplots-0.9-3/heplots/man/statList.Rd |only
42 files changed, 974 insertions(+), 96 deletions(-)
Title: General Recognition Theory
Diff between grt versions 0.1.0 dated 2010-07-27 and 0.1-1 dated 2010-07-29
Description: Functions to generate and analyze data for psychology
experiments based on the General Recognition Theory.
Author: The original Matlab toolbox by Leola A. Alfonso-Reese. R port,
with several significant modifications by Kazunaga Matsuki.
Maintainer: Kazunaga Matsuki
DESCRIPTION | 7 +++----
NAMESPACE | 31 +++++++------------------------
R/glc.R | 18 ------------------
R/gqc.R | 31 -------------------------------
R/scale.R |only
man/grt-package.Rd | 4 ++--
man/scale.glc.Rd | 14 ++++++++++++--
7 files changed, 24 insertions(+), 81 deletions(-)
Title: Graphical Analysis of Variance
Diff between granova versions 1.3 dated 2010-04-14 and 1.4 dated 2010-07-29
Description: This small collection of functions provides distinctive
graphics for display of anova results. The two principal
functions are granova.1w (a graphic for one way anova) and
granova.2w (a corresponding graphic for two way anova). These
functions were written to display data for any number of
groups, regardless of their sizes (however, very large data
sets or numbers of groups are likely to be problematic). For
these two functions a specialized approach is used to construct
data-based contrast vectors with respect to which anova data
are displayed. The result is that the graphics use straight
lines, and flat surfaces, to help ensure clear interpretations
while being faithful to the standard effect tests in anova; the
graphic results are complementary to standard summary tables
for these two basic kinds of analysis of variance. Two
additional functions are granova.ds (for comparing two
dependent samples of data), and granova.contr (which provides
graphic displays for a priori contrasts). All functions provide
relevant numerical results to supplement the graphic displays
of anova data. The graphics based on these functions are aimed
at students and non-statistician analysts; but they can be
generally helpful for identifying outliers, clusters, trends or
the role of non-linear transformations of data. In the case of
granova.1w and granova.ds especially, several arguments have
been provided to facilitate construction of graphics that
accommodate diverse features of data, and their corresponding
display requirements.
Author: Robert M. Pruzek
Maintainer: James E. Helmreich
DESCRIPTION | 13 ++++++-------
NAMESPACE | 2 +-
R/granova.1w.R | 13 ++++++-------
R/granova.2w.R | 4 ++--
4 files changed, 15 insertions(+), 17 deletions(-)
Title: Toolkit implementation of gWidgets for tcltk package
Diff between gWidgetstcltk versions 0.0-38 dated 2010-07-09 and 0.0-39 dated 2010-07-29
Description: Port of the gWidgets API to the tcltk package. Requires TK
8.5 or greater for the tile (ttk)widgets
http://www.tcl.tk/software/tcltk/8.5.tml. This is the default
on Windows. Under linux, it must be installed. Under Mac OS X
(10.5) it must be upgraded. See www.tcl.tk to download source.
Under the Mac it compiles and installs cleanly.
Author: John Verzani
Maintainer: John Verzani
ChangeLog | 18 ++
DESCRIPTION | 8 -
NEWS | 8 +
R/aaaGenerics.R | 66 +++++---
R/aaaHandlers.R | 287 ++++++++++++++++++++++++++------------
R/common.R | 2
R/gcheckboxgroup.R | 33 ++--
R/glayout.R | 26 +++
R/gradio.R | 55 ++++++-
R/gtable.R | 145 ++++++++++---------
R/gtree.R | 95 +++++++++---
TODO.txt | 40 ++---
man/gWidgetstcltk-package.Rd | 49 ++++--
man/gWidgetstcltk-undocumented.Rd | 11 +
14 files changed, 576 insertions(+), 267 deletions(-)
Title: Toolkit implementation of gWidgets for RGtk2
Diff between gWidgetsRGtk2 versions 0.0-67 dated 2010-07-09 and 0.0-68 dated 2010-07-29
Description: Port of gWidgets API to RGtk2
Author: Michael Lawrence, John Verzani
Maintainer: John Verzani
ChangeLog | 33 +++++
DESCRIPTION | 6 -
NEWS | 8 +
R/aaaGenerics.R | 2
R/common.R | 2
R/gbutton.R | 1
R/glayout.R | 28 ++++-
R/gtext.R | 8 +
R/gtree.R | 212 +++++++++++++++++++++++++++-----------
R/gvarbrowser.R | 33 ++++-
TODO.txt | 5
man/gWidgetsRGtk2-package.Rd | 5
man/gWidgetsRGtk2-undocumented.Rd | 3
13 files changed, 271 insertions(+), 75 deletions(-)
Title: Forecasting functions for time series
Diff between forecast versions 2.05 dated 2010-05-11 and 2.06 dated 2010-07-29
Description: Methods and tools for displaying and analysing univariate
time series forecasts including exponential smoothing via state
space models and automatic ARIMA modelling.
Author: Rob J Hyndman
Maintainer: Rob J Hyndman
ChangeLog | 4
DESCRIPTION | 8 -
NAMESPACE | 5 -
R/arfima.R | 18 +++-
R/simulate.R | 240 ++++++++++++++++++++++++++++++++++++++++++++++++++------
man/arfima.Rd | 12 +-
man/simulate.Rd | 20 +++-
7 files changed, 268 insertions(+), 39 deletions(-)
More information about constrainedKriging at CRAN
Permanent link
Title: Companion to Applied Regression
Diff between car versions 2.0-0 dated 2010-07-26 and 2.0-1 dated 2010-07-29
Description: This package accompanies J. Fox and S. Weisberg, An R
Companion to Applied Regression, Second Edition, Sage,
forthcoming.
Author: John Fox
Maintainer: John Fox
DESCRIPTION | 12 ++++++------
NAMESPACE | 4 ++--
NEWS | 4 ++++
man/car-package.Rd | 4 ++--
man/linearHypothesis.Rd | 7 ++++---
5 files changed, 18 insertions(+), 13 deletions(-)
Title: Automated Large Linear Analysis Node
Diff between allan versions 1.0 dated 2010-06-23 and 1.01 dated 2010-07-29
Description: Automated fitting of linear regression models and a
stepwise routine
Author: Alan Lee
Maintainer: Alan Lee
allan-1.0/allan/R/allan-internal.R |only
allan-1.01/allan/DESCRIPTION | 11 ++++++-----
allan-1.01/allan/R/allanVarSelect.R | 6 ++++--
allan-1.01/allan/man/allan-package.Rd | 4 ++--
allan-1.01/allan/man/allanVarSelect.Rd | 2 +-
allan-1.01/allan/man/getbestchunksize.Rd | 4 ++--
allan-1.01/allan/man/predictvbiglm.Rd | 3 ++-
7 files changed, 17 insertions(+), 13 deletions(-)
Title: adegenet: a R package for the multivariate analysis of genetic
markers.
Diff between adegenet versions 1.2-4 dated 2010-04-16 and 1.2-5 dated 2010-07-29
Description: Classes and functions for genetic data analysis within the
multivariate framework.
Author: Thibaut Jombart
Maintainer: Thibaut Jombart
ChangeLog | 22 +
DESCRIPTION | 15
DESCRIPTION.old |only
R/basicMethods.R | 145 +++++++
R/chooseCN.R | 25 -
R/handling.R | 138 -------
R/haploGen.R | 265 +++++++-------
R/loadingplot.R | 13
R/seqTrack.R | 837 ++++++++++++++++++++-------------------------
R/zzz.R | 3
inst/files/pdH1N1-HA.fasta |only
inst/files/pdH1N1-NA.fasta |only
inst/files/pdH1N1-data.csv |only
man/H3N2.Rd | 2
man/adegenet.package.Rd | 28 -
man/chooseCN.Rd | 9
man/dapc.Rd | 2
man/dapcIllus.Rd | 2
man/df2genind.Rd | 2
man/eHGDP.Rd | 2
man/haploGen.Rd | 181 +++++++++
man/seqTrack.Rd | 292 +++++++++++++--
22 files changed, 1187 insertions(+), 796 deletions(-)
Title: Time series Aggregation
Diff between TSAgg versions 0.1-8 dated 2010-06-13 and 0.1-9 dated 2010-07-29
Description: Time series aggregation for incomplete time series data.
Author: JS Lessels.
Maintainer: Jason Scott Lessels
DESCRIPTION | 10 +++++-----
R/hoursAgg.R | 9 +++++----
R/timeSeries.R | 12 +++++++++---
man/hoursAgg.Rd | 5 ++++-
man/timeSeries.Rd | 8 +++++---
5 files changed, 28 insertions(+), 16 deletions(-)
Title: Rcpp integration for Armadillo templated linear algebra library
Diff between RcppArmadillo versions 0.2.3 dated 2010-06-15 and 0.2.4 dated 2010-07-29
Description: R and Armadillo integration using Rcpp Armadillo is a
templated C++ linear algebra library aiming towards a good
balance between speed and ease of use. Integer, floating point
and complex numbers are supported, as well as a subset of
trigonometric and statistics functions. Various matrix
decompositions are provided through optional integration with
LAPACK and ATLAS libraries.
A delayed evaluation approach is employed (during compile time) to
combine several operations into one, and to reduce (or
eliminate) the need for temporaries. This is accomplished
through recursive templates and template meta-programming.
This library is useful if C++ has been decided as the language of
choice (due to speed and/or integration capabilities), rather
than another language.
The RcppArmadillo package includes the header files from the templated
Armadillo library. Thus users do not need to install Armadillo
itself in order to use RcppArmadillo.
This Armadillo integration provides a nice illustration of the
capabilities of the Rcpp package for seamless R and C++
integration.
Author: Romain Francois, Dirk Eddelbuettel and Doug Bates
Maintainer: Romain, Dirk and Doug
RcppArmadillo-0.2.3/RcppArmadillo/inst/include/armadillo_bits/fn_rand.hpp |only
RcppArmadillo-0.2.4/RcppArmadillo/DESCRIPTION | 13
RcppArmadillo-0.2.4/RcppArmadillo/NEWS | 10
RcppArmadillo-0.2.4/RcppArmadillo/inst/ChangeLog | 19
RcppArmadillo-0.2.4/RcppArmadillo/inst/doc/RcppArmadillo-unitTests.pdf |binary
RcppArmadillo-0.2.4/RcppArmadillo/inst/doc/unitTests-results/RcppArmadillo-unitTests.html | 40
RcppArmadillo-0.2.4/RcppArmadillo/inst/doc/unitTests-results/RcppArmadillo-unitTests.txt | 10
RcppArmadillo-0.2.4/RcppArmadillo/inst/include/armadillo | 79
RcppArmadillo-0.2.4/RcppArmadillo/inst/include/armadillo_bits/Col_meat.hpp | 36
RcppArmadillo-0.2.4/RcppArmadillo/inst/include/armadillo_bits/Col_proto.hpp | 8
RcppArmadillo-0.2.4/RcppArmadillo/inst/include/armadillo_bits/Cube_meat.hpp | 169 +
RcppArmadillo-0.2.4/RcppArmadillo/inst/include/armadillo_bits/Cube_proto.hpp | 15
RcppArmadillo-0.2.4/RcppArmadillo/inst/include/armadillo_bits/Mat_meat.hpp | 169 +
RcppArmadillo-0.2.4/RcppArmadillo/inst/include/armadillo_bits/Mat_proto.hpp | 23
RcppArmadillo-0.2.4/RcppArmadillo/inst/include/armadillo_bits/Row_meat.hpp | 36
RcppArmadillo-0.2.4/RcppArmadillo/inst/include/armadillo_bits/Row_proto.hpp | 8
RcppArmadillo-0.2.4/RcppArmadillo/inst/include/armadillo_bits/arma_version.hpp | 13
RcppArmadillo-0.2.4/RcppArmadillo/inst/include/armadillo_bits/atlas_proto.hpp | 97
RcppArmadillo-0.2.4/RcppArmadillo/inst/include/armadillo_bits/auxlib_meat.hpp | 4
RcppArmadillo-0.2.4/RcppArmadillo/inst/include/armadillo_bits/blas_proto.hpp | 62
RcppArmadillo-0.2.4/RcppArmadillo/inst/include/armadillo_bits/cmath_wrap.hpp | 258 ++
RcppArmadillo-0.2.4/RcppArmadillo/inst/include/armadillo_bits/compiler_setup.hpp | 86
RcppArmadillo-0.2.4/RcppArmadillo/inst/include/armadillo_bits/config.hpp | 42
RcppArmadillo-0.2.4/RcppArmadillo/inst/include/armadillo_bits/debug.hpp | 101
RcppArmadillo-0.2.4/RcppArmadillo/inst/include/armadillo_bits/diskio_meat.hpp | 872 +++----
RcppArmadillo-0.2.4/RcppArmadillo/inst/include/armadillo_bits/diskio_proto.hpp | 130 -
RcppArmadillo-0.2.4/RcppArmadillo/inst/include/armadillo_bits/eop_aux.hpp | 297 --
RcppArmadillo-0.2.4/RcppArmadillo/inst/include/armadillo_bits/eop_core_meat.hpp | 98
RcppArmadillo-0.2.4/RcppArmadillo/inst/include/armadillo_bits/eop_core_proto.hpp | 32
RcppArmadillo-0.2.4/RcppArmadillo/inst/include/armadillo_bits/eop_cube_core_meat.hpp | 112
RcppArmadillo-0.2.4/RcppArmadillo/inst/include/armadillo_bits/eop_cube_core_proto.hpp | 24
RcppArmadillo-0.2.4/RcppArmadillo/inst/include/armadillo_bits/field_meat.hpp | 396 ++-
RcppArmadillo-0.2.4/RcppArmadillo/inst/include/armadillo_bits/field_proto.hpp | 83
RcppArmadillo-0.2.4/RcppArmadillo/inst/include/armadillo_bits/fn_chol.hpp | 4
RcppArmadillo-0.2.4/RcppArmadillo/inst/include/armadillo_bits/fn_conv.hpp |only
RcppArmadillo-0.2.4/RcppArmadillo/inst/include/armadillo_bits/fn_conv_to.hpp | 1167 +++-------
RcppArmadillo-0.2.4/RcppArmadillo/inst/include/armadillo_bits/fn_det.hpp | 6
RcppArmadillo-0.2.4/RcppArmadillo/inst/include/armadillo_bits/fn_dot.hpp | 13
RcppArmadillo-0.2.4/RcppArmadillo/inst/include/armadillo_bits/fn_eig.hpp | 17
RcppArmadillo-0.2.4/RcppArmadillo/inst/include/armadillo_bits/fn_inv.hpp | 2
RcppArmadillo-0.2.4/RcppArmadillo/inst/include/armadillo_bits/fn_log_det.hpp | 16
RcppArmadillo-0.2.4/RcppArmadillo/inst/include/armadillo_bits/fn_lu.hpp | 6
RcppArmadillo-0.2.4/RcppArmadillo/inst/include/armadillo_bits/fn_misc.hpp | 100
RcppArmadillo-0.2.4/RcppArmadillo/inst/include/armadillo_bits/fn_ones.hpp | 72
RcppArmadillo-0.2.4/RcppArmadillo/inst/include/armadillo_bits/fn_pinv.hpp | 7
RcppArmadillo-0.2.4/RcppArmadillo/inst/include/armadillo_bits/fn_princomp.hpp | 15
RcppArmadillo-0.2.4/RcppArmadillo/inst/include/armadillo_bits/fn_princomp_cov.hpp | 12
RcppArmadillo-0.2.4/RcppArmadillo/inst/include/armadillo_bits/fn_qr.hpp | 8
RcppArmadillo-0.2.4/RcppArmadillo/inst/include/armadillo_bits/fn_randn.hpp | 83
RcppArmadillo-0.2.4/RcppArmadillo/inst/include/armadillo_bits/fn_randu.hpp |only
RcppArmadillo-0.2.4/RcppArmadillo/inst/include/armadillo_bits/fn_rank.hpp | 7
RcppArmadillo-0.2.4/RcppArmadillo/inst/include/armadillo_bits/fn_solve.hpp | 15
RcppArmadillo-0.2.4/RcppArmadillo/inst/include/armadillo_bits/fn_svd.hpp | 16
RcppArmadillo-0.2.4/RcppArmadillo/inst/include/armadillo_bits/fn_toeplitz.hpp |only
RcppArmadillo-0.2.4/RcppArmadillo/inst/include/armadillo_bits/fn_trace.hpp | 49
RcppArmadillo-0.2.4/RcppArmadillo/inst/include/armadillo_bits/fn_trig.hpp | 63
RcppArmadillo-0.2.4/RcppArmadillo/inst/include/armadillo_bits/fn_trunc_exp.hpp |only
RcppArmadillo-0.2.4/RcppArmadillo/inst/include/armadillo_bits/fn_trunc_log.hpp |only
RcppArmadillo-0.2.4/RcppArmadillo/inst/include/armadillo_bits/fn_zeros.hpp | 66
RcppArmadillo-0.2.4/RcppArmadillo/inst/include/armadillo_bits/format_wrap.hpp | 51
RcppArmadillo-0.2.4/RcppArmadillo/inst/include/armadillo_bits/glue_conv_meat.hpp |only
RcppArmadillo-0.2.4/RcppArmadillo/inst/include/armadillo_bits/glue_conv_proto.hpp |only
RcppArmadillo-0.2.4/RcppArmadillo/inst/include/armadillo_bits/glue_join_meat.hpp | 14
RcppArmadillo-0.2.4/RcppArmadillo/inst/include/armadillo_bits/glue_toeplitz_meat.hpp |only
RcppArmadillo-0.2.4/RcppArmadillo/inst/include/armadillo_bits/glue_toeplitz_proto.hpp |only
RcppArmadillo-0.2.4/RcppArmadillo/inst/include/armadillo_bits/itpp_wrap.hpp | 56
RcppArmadillo-0.2.4/RcppArmadillo/inst/include/armadillo_bits/op_dot_meat.hpp | 105
RcppArmadillo-0.2.4/RcppArmadillo/inst/include/armadillo_bits/op_dot_proto.hpp | 33
RcppArmadillo-0.2.4/RcppArmadillo/inst/include/armadillo_bits/restrictors.hpp | 21
RcppArmadillo-0.2.4/RcppArmadillo/inst/include/armadillo_bits/running_stat_vec_meat.hpp | 123 -
RcppArmadillo-0.2.4/RcppArmadillo/inst/include/armadillo_bits/running_stat_vec_proto.hpp | 26
RcppArmadillo-0.2.4/RcppArmadillo/inst/include/armadillo_bits/subview_meat.hpp | 72
RcppArmadillo-0.2.4/RcppArmadillo/inst/include/armadillo_bits/subview_proto.hpp | 3
RcppArmadillo-0.2.4/RcppArmadillo/inst/include/armadillo_bits/syslib_proto.hpp | 152 +
RcppArmadillo-0.2.4/RcppArmadillo/inst/include/armadillo_bits/traits.hpp | 2
RcppArmadillo-0.2.4/RcppArmadillo/inst/include/armadillo_bits/upgrade_val.hpp | 16
RcppArmadillo-0.2.4/RcppArmadillo/inst/unitTests/runTests.R | 24
RcppArmadillo-0.2.4/RcppArmadillo/src/fastLm.cpp | 2
RcppArmadillo-0.2.4/RcppArmadillo/tests/doRUnit.R | 2
79 files changed, 3358 insertions(+), 2430 deletions(-)
Title: Applied Econometrics with R
Diff between AER versions 1.1-5 dated 2010-06-21 and 1.1-6 dated 2010-07-29
Description: Functions, data sets, examples, demos, and vignettes for
the book Christian Kleiber and Achim Zeileis (2008), Applied
Econometrics with R, Springer-Verlag, New York. ISBN
978-0-387-77316-2. (See the vignette for a package overview.)
Author: Christian Kleiber, Achim Zeileis
Maintainer: Achim Zeileis
DESCRIPTION | 12 ++++++------
NAMESPACE | 4 ++--
NEWS | 6 ++++++
R/ivreg.R | 2 +-
R/tobit.R | 6 +++---
demo/Ch-LinearRegression.R | 2 +-
demo/Ch-Microeconometrics.R | 2 +-
inst/doc/AER.Rnw | 3 +++
inst/doc/AER.pdf |binary
inst/doc/Sweave-journals.pdf | 10 +++++-----
man/Electricity1955.Rd | 2 +-
man/Greene2003.Rd | 15 +++++++++------
man/SIC33.Rd | 2 +-
man/StockWatson2007.Rd | 8 ++++----
man/USGasG.Rd | 2 +-
man/USMacroG.Rd | 2 +-
man/WinkelmannBoes2009.Rd | 4 +++-
man/tobit.Rd | 2 +-
tests/Ch-Basics.Rout.save | 7 +++++--
tests/Ch-Intro.Rout.save | 26 +++++++++++++++-----------
tests/Ch-LinearRegression.R | 2 +-
tests/Ch-LinearRegression.Rout.save | 22 ++++++++++++++--------
tests/Ch-Microeconometrics.R | 2 +-
tests/Ch-Microeconometrics.Rout.save | 17 ++++++++++-------
tests/Ch-Programming.Rout.save | 15 +++++++++------
tests/Ch-TimeSeries.Rout.save | 7 +++++--
tests/Ch-Validation.Rout.save | 7 +++++--
27 files changed, 114 insertions(+), 75 deletions(-)
Title: Parameter estimation for the Averaging model of Information
Integration Theory
Diff between rAverage versions 0.3-1 dated 2010-07-26 and 0.3-2 dated 2010-07-29
Description: Parameter estimation for the Averaging model of Anderson's
Information Integration Theory
Author: Giulio Vidotto
Maintainer: Stefano Noventa
DESCRIPTION | 16 ++++++++--------
man/rAverage-package.Rd | 4 ++--
2 files changed, 10 insertions(+), 10 deletions(-)
Title: Spatial Coverage Sampling and Random Sampling from Compact
Geographical Strata
Diff between spcosa versions 0.2-1 dated 2010-04-19 and 0.2-2 dated 2010-07-29
Description: Spatial coverage sampling and random sampling from compact
geographical strata created by k-means.
Author: D.J.J. Walvoort, D.J. Brus, and J.J. de Gruijter
Maintainer: Dennis Walvoort
DESCRIPTION | 10 -
NEWS | 6
R/method_plot-CompactStratification-SamplingPattern.R | 6
R/method_plot-CompactStratification-SamplingPatternPriorPoints.R | 8
R/method_plot-CompactStratification-SamplingPatternRandomComposite.R | 8
R/method_plot-CompactStratification.R | 10 -
R/method_plot-SamplingPattern.R | 2
R/method_plot-SamplingPatternPriorPoints.R | 8
R/method_plot-SamplingPatternRandomComposite.R | 8
demo/farmsumSCS.R | 84 +++++-----
inst/CITATION | 10 -
inst/FAQ |only
inst/doc/spcosa.pdf |binary
tests/unitTesting.html | 18 +-
14 files changed, 94 insertions(+), 84 deletions(-)
Title: Light-weight methods for normalization and visualization of
microarray data using only basic R data types
Diff between aroma.light versions 1.16.0 dated 2010-04-25 and 1.16.1 dated 2010-07-29
Description: Methods for microarray analysis that take basic data types
such as matrices and lists of vectors. These methods can be
used standalone, be utilized in other packages, or be wrapped
up in higher-level classes.
Author: Henrik Bengtsson
Maintainer: Henrik Bengtsson
DESCRIPTION | 8 ++++----
R/callNaiveGenotypes.numeric.R | 12 +++++++++---
inst/NEWS | 7 ++++++-
3 files changed, 19 insertions(+), 8 deletions(-)