Title: Meta-Analysis Package for R
Diff between metafor versions 1.3-0 dated 2010-06-25 and 1.4-0 dated 2010-07-30
Description: The metafor package consists of a collection of functions
for conducting meta-analyses in R. Fixed- and random-effects
models (with and without moderators) can be fitted via the
general linear (mixed-effects) model. For 2x2 table data, the
Mantel-Haenszel and Peto's method are also implemented.
Author: Wolfgang Viechtbauer
Maintainer: Wolfgang Viechtbauer
metafor-1.3-0/metafor/man/logLik.rma.Rd |only
metafor-1.4-0/metafor/DESCRIPTION | 10 +-
metafor-1.4-0/metafor/NAMESPACE | 4
metafor-1.4-0/metafor/NEWS | 13 +++
metafor-1.4-0/metafor/R/metafor.R | 78 +++++++++++++++----
metafor-1.4-0/metafor/inst |only
metafor-1.4-0/metafor/man/addpoly.Rd | 3
metafor-1.4-0/metafor/man/addpoly.default.Rd | 3
metafor-1.4-0/metafor/man/addpoly.rma.Rd | 3
metafor-1.4-0/metafor/man/anova.rma.uni.Rd | 4
metafor-1.4-0/metafor/man/blup.Rd | 2
metafor-1.4-0/metafor/man/blup.rma.uni.Rd | 8 +
metafor-1.4-0/metafor/man/coef.permutest.rma.uni.Rd | 3
metafor-1.4-0/metafor/man/coef.rma.Rd | 3
metafor-1.4-0/metafor/man/confint.rma.uni.Rd | 8 +
metafor-1.4-0/metafor/man/cumul.Rd | 7 +
metafor-1.4-0/metafor/man/cumul.rma.mh.Rd | 7 +
metafor-1.4-0/metafor/man/cumul.rma.uni.Rd | 7 +
metafor-1.4-0/metafor/man/dat.bcg.Rd | 6 -
metafor-1.4-0/metafor/man/escalc.Rd | 18 ++--
metafor-1.4-0/metafor/man/fitstats.Rd | 4
metafor-1.4-0/metafor/man/fitstats.rma.Rd | 44 +++++++++-
metafor-1.4-0/metafor/man/fitted.rma.Rd | 3
metafor-1.4-0/metafor/man/forest.Rd | 5 +
metafor-1.4-0/metafor/man/forest.default.Rd | 5 +
metafor-1.4-0/metafor/man/forest.rma.Rd | 5 +
metafor-1.4-0/metafor/man/forest.rma.cumul.Rd | 9 ++
metafor-1.4-0/metafor/man/fsn.Rd | 8 +
metafor-1.4-0/metafor/man/funnel.Rd | 7 +
metafor-1.4-0/metafor/man/funnel.rma.Rd | 8 +
metafor-1.4-0/metafor/man/hatvalues.rma.uni.Rd | 5 +
metafor-1.4-0/metafor/man/influence.rma.uni.Rd | 10 +-
metafor-1.4-0/metafor/man/leave1out.Rd | 5 +
metafor-1.4-0/metafor/man/leave1out.rma.mh.Rd | 5 +
metafor-1.4-0/metafor/man/leave1out.rma.uni.Rd | 5 +
metafor-1.4-0/metafor/man/metafor-package.Rd | 12 +-
metafor-1.4-0/metafor/man/metafor.news.Rd | 3
metafor-1.4-0/metafor/man/permutest.Rd | 3
metafor-1.4-0/metafor/man/permutest.rma.uni.Rd | 8 +
metafor-1.4-0/metafor/man/plot.infl.rma.uni.Rd | 5 +
metafor-1.4-0/metafor/man/plot.rma.uni.Rd | 3
metafor-1.4-0/metafor/man/predict.rma.Rd | 6 -
metafor-1.4-0/metafor/man/print.anova.rma.uni.Rd | 3
metafor-1.4-0/metafor/man/print.fsn.Rd | 3
metafor-1.4-0/metafor/man/print.infl.rma.uni.Rd | 5 +
metafor-1.4-0/metafor/man/print.list.rma.Rd | 3
metafor-1.4-0/metafor/man/print.permutest.rma.uni.Rd | 3
metafor-1.4-0/metafor/man/print.predict.rma.Rd | 3
metafor-1.4-0/metafor/man/print.ranktest.rma.Rd | 3
metafor-1.4-0/metafor/man/print.regtest.rma.Rd | 3
metafor-1.4-0/metafor/man/print.rma.uni.Rd | 3
metafor-1.4-0/metafor/man/qqnorm.rma.uni.Rd | 4
metafor-1.4-0/metafor/man/radial.Rd | 9 ++
metafor-1.4-0/metafor/man/radial.rma.Rd | 6 -
metafor-1.4-0/metafor/man/ranktest.Rd | 4
metafor-1.4-0/metafor/man/ranktest.rma.Rd | 4
metafor-1.4-0/metafor/man/regtest.Rd | 19 ++++
metafor-1.4-0/metafor/man/regtest.rma.Rd | 14 +--
metafor-1.4-0/metafor/man/residuals.rma.Rd | 6 +
metafor-1.4-0/metafor/man/rma.mh.Rd | 6 -
metafor-1.4-0/metafor/man/rma.peto.Rd | 6 -
metafor-1.4-0/metafor/man/rma.uni.Rd | 28 +++---
metafor-1.4-0/metafor/man/transf.Rd | 3
metafor-1.4-0/metafor/man/trimfill.Rd | 6 -
metafor-1.4-0/metafor/man/trimfill.rma.uni.Rd | 6 -
metafor-1.4-0/metafor/man/vcov.rma.Rd | 3
metafor-1.4-0/metafor/man/weights.rma.uni.Rd | 3
67 files changed, 413 insertions(+), 98 deletions(-)
Title: Translate Neurodevelopmental Event Timing Across Species
Diff between ttime versions 1.2 dated 2010-05-25 and 1.2.2 dated 2010-07-30
Description: Translate neurodevelopmental event timing across species.
Predict unknown event timings and investigate phylogenetic
proximity by hierarchical clustering of the known and predicted
event timings.
Author: Radhakrishnan Nagarajan
Maintainer: Radhakrishnan Nagarajan
DESCRIPTION | 8 -
R/phylo.R | 29 ++++---
R/translate.R | 206 +++++++++++++++++++++++++++------------------------
man/event_data.Rd | 2
man/phylo.Rd | 2
man/translate.Rd | 12 +-
man/ttime-package.Rd | 8 -
7 files changed, 146 insertions(+), 121 deletions(-)
Title: R interface to the CONIFERS forest growth model
Diff between rconifers versions 1.0.0 dated 2009-12-20 and 1.0.1 dated 2010-07-30
Description: This package contains functions for simulating future
forest conditions using the CONIFERS growth model.
Author: Jeff D. Hamann
Maintainer: Jeff D. Hamann
rconifers-1.0.0/rconifers/CITATION |only
rconifers-1.0.1/rconifers/DESCRIPTION | 8 ++++----
rconifers-1.0.1/rconifers/R/rconifers.r | 10 ++++++++--
rconifers-1.0.1/rconifers/inst |only
4 files changed, 12 insertions(+), 6 deletions(-)
Title: Combination of Factorial Methods and Cluster Analysis
Diff between FactoClass versions 1.0.3 dated 2009-11-26 and 1.0.4 dated 2010-07-30
Description: Multivariate exploration of a data table with factorial
analysis and cluster methods.
Author: Campo Elias Pardo
Maintainer: Campo Elias Pardo
DESCRIPTION | 8 ++++----
R/stableclus.R |only
man/FactoClass.Rd | 8 +-------
man/FactoClass.tex.Rd | 15 +--------------
man/dudi.tex.Rd | 1 -
man/planfac.Rd | 5 ++---
man/stableclus.Rd |only
7 files changed, 8 insertions(+), 29 deletions(-)
Title: Functions and datasets for books by Jeff Gill.
Diff between BaM versions 0.96 dated 2009-02-12 and 0.98 dated 2010-07-30
Description: Books is "Bayesian Methods: A Social and Behavioral
Sciences Approach, Second Edition published by CRC Press, 2007"
Author: Jeff Gill
Maintainer: Jeff Gill
BaM-0.96/BaM/Rplots.pdf |only
BaM-0.98/BaM/DESCRIPTION | 20 ++++++++++++--------
BaM-0.98/BaM/INDEX | 3 ++-
BaM-0.98/BaM/data/DA_cwp.rda |binary
BaM-0.98/BaM/inst |only
BaM-0.98/BaM/man/DA_cwp.Rd |only
BaM-0.98/BaM/man/rmultnorm.Rd | 8 ++++----
7 files changed, 18 insertions(+), 13 deletions(-)
Title: Tests for outliers
Diff between outliers versions 0.13-2 dated 2007-03-07 and 0.13-3 dated 2010-07-30
Description: A collection of some tests commonly used for identifying
outliers.
Author: Lukasz Komsta
Maintainer: Lukasz Komsta
DESCRIPTION | 25 ++++++++++++++-----------
man/qdixon.Rd | 2 --
man/scores.Rd | 2 +-
3 files changed, 15 insertions(+), 14 deletions(-)
Title: GEV conditonal density estimation network
Diff between GEVcdn versions 1.0 dated 2010-04-18 and 1.0.1 dated 2010-07-30
Description: A flexible nonlinear modelling framework for nonstationary
generalized extreme value analysis in hydroclimatology
Author: Alex J. Cannon
Maintainer: Alex J. Cannon
GEVcdn-1.0.1/GEVcdn/DESCRIPTION | 6 +++---
GEVcdn-1.0.1/GEVcdn/inst |only
GEVcdn-1.0.1/GEVcdn/man/GEVcdn-package.Rd | 4 ++--
GEVcdn-1.0/GEVcdn/CITATION |only
4 files changed, 5 insertions(+), 5 deletions(-)
Title: Bayesian Model Averaging Library
Diff between BMS versions 0.2.4 dated 2010-07-26 and 0.2.5 dated 2010-07-30
Description: Bayesian Model Averaging for univariate linear models
under Zellner's g prior. Options include: fixed (BRIC, UIP,
...) and flexible g priors (Empirical Bayes, hyper-g), 5 kinds
of model prior concepts, and model sampling via model
enumeration or MCMC samplers (Metropolis-Hastings plain or
reversible jump). Post-processing allows for inference
according to different concepts (likelihood vs MCMC-based) and
for plotting (posterior model size and coefficient densities,
best models, model convergence, BMA comparison).
Author: Martin Feldkircher and Stefan Zeugner
Maintainer: Stefan Zeugner
BMS-0.2.4/BMS/CITATION |only
BMS-0.2.4/BMS/inst/doc/bma.bib |only
BMS-0.2.5/BMS/DESCRIPTION | 18
BMS-0.2.5/BMS/R/BMS-internal.R | 2
BMS-0.2.5/BMS/inst/CITATION |only
BMS-0.2.5/BMS/inst/doc/Rplots.pdf |40819 +++++++++++++++++-------------------
BMS-0.2.5/BMS/inst/doc/bmasmall.bib |only
BMS-0.2.5/BMS/inst/doc/bms.Rnw | 2
BMS-0.2.5/BMS/inst/doc/bms.pdf |binary
BMS-0.2.5/BMS/man/BMS-package.Rd | 6
10 files changed, 19952 insertions(+), 20895 deletions(-)
Title: Profile Output Processing Tools for R
Diff between proftools versions 0.0-2 dated 2007-10-09 and 0.0-3 dated 2010-07-30
Description: Tools for examining Rprof profile output.
Author: Luke Tierney
Maintainer: Luke Tierney
DESCRIPTION | 6 ++++--
man/plotProfileCallGraph.Rd | 1 -
2 files changed, 4 insertions(+), 3 deletions(-)
Title: Interface to Unidata netCDF data files
Diff between ncdf versions 1.6.2 dated 2010-07-30 and 1.6.3 dated 2010-07-30
Description: This package provides a high-level R interface to
Unidata's netCDF data files, which are portable across
platforms and include metadata information in addition to the
data sets. Using this package netCDF files can be opened and
data sets read in easily. It is also easy to create new netCDF
dimensions, variables, and files, or manipulate existing netCDF
files. This interface provides considerably more functionality
than the old "netCDF" package for R, and is not compatible with
the old "netCDF" package for R. Release 1.2 (2005-01-24) adds
better support for character variables, and miscellaneous bug
fixes. Release 1.3 (2005-03-27) is for miscellaneous bug
fixes, and improves the documentation. Release 1.4
(2005-06-27) improves the efficiency, and adds small bug fixes.
Release 1.5 (2006-02-27) adds support for byte variables, plus
small bug fixes. Release 1.6 (2006-06-19) adds various bug
fixes, plus support for making dimensions WITHOUT dimvars
(coordinate variables), although I think this is a bad idea in
general. ALSO, the default behavior for put.var.ncdf with
unlimited variables and NO specified start and count parameters
has changed! Before, the default was to append to the end of
the existing variable. Now, the default is to assume a start
of 1 along each dimension, and a count of the current length of
each dimension. This really can be ambiguous when using an
unlimited dimension. I always specify both start and count when
writing to a variable with an unlimited dimension, and suggest
you do as well. I make require this in a future release, as it
seems to cause people problems.
Author: David Pierce
Maintainer: Brian Ripley
ncdf-1.6.2/ncdf/R/load.R.in |only
ncdf-1.6.2/ncdf/a.out.dSYM |only
ncdf-1.6.3/ncdf/DESCRIPTION | 10 +++++-----
ncdf-1.6.3/ncdf/R/load.R |only
ncdf-1.6.3/ncdf/cleanup | 2 +-
ncdf-1.6.3/ncdf/configure | 5 ++---
ncdf-1.6.3/ncdf/configure.in | 4 ++--
ncdf-1.6.3/ncdf/src/ncdf.c | 17 +++++++++--------
ncdf-1.6.3/ncdf/src/ncdf3.c | 2 +-
9 files changed, 20 insertions(+), 20 deletions(-)
Title: Exact P-values and Matching Confidence Intervals for simple
Discrete Parametric Cases
Diff between exactci versions 1.1-0 dated 2010-05-27 and 1.1-0.1 dated 2010-07-30
Description: Calculates exact tests and confidence intervals for
one-sample binomial and one- or two-sample Poisson cases.
Author: M.P. Fay
Maintainer: M.P. Fay
ChangeLog | 3 ++-
DESCRIPTION | 8 ++++----
inst/CITATION | 10 +++++-----
inst/doc/exactci.pdf |binary
man/binom.exact.Rd | 2 ++
man/exactci-package.Rd | 2 ++
man/poisson.exact.Rd | 2 ++
7 files changed, 17 insertions(+), 10 deletions(-)
Title: Exact Conditional Tests and Confidence Intervals for 2x2 tables
Diff between exact2x2 versions 1.0-1 dated 2010-05-27 and 1.0-1.1 dated 2010-07-30
Description: Calculates Fisher's exact test, Blaker's exact test, or
the exact McNemar's test with appropriate matching confidence
intervals.
Author: M.P. Fay
Maintainer: M.P. Fay
ChangeLog | 3 +++
DESCRIPTION | 8 ++++----
inst/CITATION | 20 ++++++++++----------
inst/doc/exact2x2.pdf |binary
inst/doc/exactMcNemar.pdf |binary
man/exact2x2.Rd | 3 +++
6 files changed, 20 insertions(+), 14 deletions(-)
Title: Choplump tests
Diff between choplump versions 1.0 dated 2009-10-13 and 1.0-0.1 dated 2010-07-30
Description: Choplump Tests are Permutation Tests for Comparing Two
Groups with Some Positive but Many Zero Responses
Author: M.P. Fay
Maintainer: Michael P. Fay
choplump-1.0-0.1/choplump/CHANGELOG | 3
choplump-1.0-0.1/choplump/DESCRIPTION | 8 +-
choplump-1.0-0.1/choplump/inst/CITATION |only
choplump-1.0-0.1/choplump/inst/doc/Rplots.pdf | 43 +++++++------
choplump-1.0-0.1/choplump/inst/doc/choplumpComputation.pdf |binary
choplump-1.0-0.1/choplump/inst/doc/choplumpValidation.pdf |binary
choplump-1.0-0.1/choplump/man/choplump-package.Rd | 4 -
choplump-1.0/choplump/CITATION |only
8 files changed, 33 insertions(+), 25 deletions(-)
Title: Monte Carlo hypothesis tests with Sequential Stopping
Diff between MChtest versions 1.0-1 dated 2009-10-13 and 1.0-2 dated 2010-07-30
Description: The package performs Monte Carlo hypothesis tests. It
allows a couple of different sequential stopping boundaries (a
truncated sequential probability ratio test boundary and a
boundary proposed by Besag and Clifford, 1991). Gives valid
p-values and confidence intervals on p-values.
Author: M.P. Fay
Maintainer: M.P. Fay
MChtest-1.0-1/MChtest/CITATION |only
MChtest-1.0-2/MChtest/ChangeLog | 4 ++++
MChtest-1.0-2/MChtest/DESCRIPTION | 8 ++++----
MChtest-1.0-2/MChtest/inst/CITATION |only
MChtest-1.0-2/MChtest/man/MChtest-package.Rd | 4 ++--
5 files changed, 10 insertions(+), 6 deletions(-)
Title: Extension to ggplot2.
Diff between GGally versions 0.2 dated 2010-06-02 and 0.2.1 dated 2010-07-30
Description: Package contains templates for different plots to be
combined into a plot matrix.
Author: Barret Schloerke
Maintainer: Barret Schloerke
GGally-0.2.1/GGally/DESCRIPTION | 12
GGally-0.2.1/GGally/R/find-combo.r | 17
GGally-0.2.1/GGally/R/gg-plots.r | 452 +++++++------
GGally-0.2.1/GGally/R/ggpairs.r | 653 +++++++++-----------
GGally-0.2.1/GGally/man/addAndOverwriteAes.Rd |only
GGally-0.2.1/GGally/man/eval_ggpair.Rd |only
GGally-0.2.1/GGally/man/find_plot_type.Rd |only
GGally-0.2.1/GGally/man/getPlot.Rd | 5
GGally-0.2.1/GGally/man/get_plot_type.Rd |only
GGally-0.2.1/GGally/man/ggally_barDiag.Rd | 2
GGally-0.2.1/GGally/man/ggally_blank.Rd | 4
GGally-0.2.1/GGally/man/ggally_box.Rd | 4
GGally-0.2.1/GGally/man/ggally_cor.Rd | 2
GGally-0.2.1/GGally/man/ggally_density.Rd | 2
GGally-0.2.1/GGally/man/ggally_densityDiag.Rd | 4
GGally-0.2.1/GGally/man/ggally_denstrip.Rd | 2
GGally-0.2.1/GGally/man/ggally_dot.Rd | 6
GGally-0.2.1/GGally/man/ggally_dotAndBox.Rd | 6
GGally-0.2.1/GGally/man/ggally_facetdensity.Rd | 5
GGally-0.2.1/GGally/man/ggally_facetdensitystrip.Rd | 2
GGally-0.2.1/GGally/man/ggally_facethist.Rd | 5
GGally-0.2.1/GGally/man/ggally_points.Rd | 4
GGally-0.2.1/GGally/man/ggally_ratio.Rd | 2
GGally-0.2.1/GGally/man/ggally_smooth.Rd | 4
GGally-0.2.1/GGally/man/ggally_text.Rd | 8
GGally-0.2.1/GGally/man/ggfluctuation2.Rd | 7
GGally-0.2.1/GGally/man/ggpairs.Rd | 131 +---
GGally-0.2.1/GGally/man/is_blank_plot.Rd |only
GGally-0.2.1/GGally/man/plot_types.Rd |only
GGally-0.2.1/GGally/man/print.ggpairs.Rd | 4
GGally-0.2.1/GGally/man/putPlot.Rd | 10
GGally-0.2.1/GGally/man/vplayout.Rd |only
GGally-0.2/GGally/inst |only
GGally-0.2/GGally/man/GGally-package.Rd |only
34 files changed, 688 insertions(+), 665 deletions(-)
Title: ada: an R package for stochastic boosting
Diff between ada versions 2.0-1 dated 2006-09-29 and 2.0-2 dated 2010-07-30
Description: Performs discrete, real, and gentle boost under both
exponential and logistic loss on a given data set. The package
ada provides a straightforward, well-documented, and broad
boosting routine for classification, ideally suited for small
to moderate-sized data sets. Please refer to the Url below for
more information.
Author: Mark Culp, Kjell Johnson, and George Michailidis
Maintainer: Mark Culp
DESCRIPTION | 33 ++++++++++++++++++---------------
R/ada-internal.R | 6 +++---
R/ada.default.R | 8 ++++----
R/ada.formula.R | 19 ++++++++++++++-----
R/ada.machine.R | 4 ++--
R/pairs.ada.R | 2 +-
R/predict.ada.R | 4 +++-
R/update.ada.R | 3 ++-
man/ada.Rd | 10 ++++++----
man/predict.ada.Rd | 8 ++------
man/soldat.Rd | 10 ++++++++--
11 files changed, 63 insertions(+), 44 deletions(-)
Title: Heart rate variability analysis of ECG data
Diff between RHRV versions 2.4 dated 2010-07-07 and 2.5 dated 2010-07-30
Description: This is a package for developing heart rate variability
studies of ECG records
Author: M. Lado, A. Mendez, D. Olivieri, L. Rodriguez-Linares, X. Vila
Maintainer: A. Mendez
DESCRIPTION | 8 ++++----
R/AddEpisodes.R | 2 +-
R/AnalyzeHRbyEpisodes.R | 2 +-
R/BuildNIHR.R | 2 +-
R/CalculateApEn.R | 2 +-
R/CalculateFracDim.R | 2 +-
R/CalculatePowerBand.R | 2 +-
R/CalculateSpectrogram.R | 2 +-
R/CreateFreqAnalysis.R | 2 +-
R/CreateNonLinearAnalysis.R | 2 +-
R/CreateTimeAnalysis.R | 2 +-
R/EditNIHR.R | 2 +-
R/FilterNIHR.R | 2 +-
R/GenerateEpisodes.R | 2 +-
R/InterpolateNIHR.R | 2 +-
R/LoadApneaWFDB.R | 2 +-
R/LoadBeatAscii.R | 2 +-
R/LoadBeatWFDB.R | 2 +-
R/LoadEpisodesAscii.R | 2 +-
R/LoadHeaderWFDB.R | 2 +-
R/PlotHR.R | 2 +-
R/PlotNIHR.R | 2 +-
R/PlotPowerBand.R | 2 +-
R/PlotSpectrogram.R | 2 +-
R/ReadFromFile.R | 2 +-
R/SplitHRbyEpisodes.R | 2 +-
R/SplitPowerBandByEpisodes.R | 2 +-
R/WriteToFile.R | 2 +-
man/AddEpisodes.Rd | 2 +-
man/AnalyzeHRbyEpisodes.Rd | 2 +-
man/BuildNIHR.Rd | 2 +-
man/BuildTakensVector.Rd | 2 +-
man/CalculateApEn.Rd | 2 +-
man/CalculateFracDim.Rd | 2 +-
man/CalculatePowerBand.Rd | 2 +-
man/CalculateSpectrogram.Rd | 2 +-
man/CreateFreqAnalysis.Rd | 2 +-
man/CreateNonLinearAnalysis.Rd | 2 +-
man/CreateTimeAnalysis.Rd | 2 +-
man/EditNIHR.Rd | 2 +-
man/FilterNIHR.Rd | 2 +-
man/GenerateEpisodes.Rd | 2 +-
man/InterpolateNIHR.Rd | 2 +-
man/LoadApneaWFDB.Rd | 2 +-
man/LoadBeatAscii.Rd | 2 +-
man/LoadBeatWFDB.Rd | 2 +-
man/LoadEpisodesAscii.Rd | 2 +-
man/LoadHeaderWFDB.Rd | 2 +-
man/PlotHR.Rd | 2 +-
man/PlotNIHR.Rd | 2 +-
man/PlotPowerBand.Rd | 2 +-
man/PlotSpectrogram.Rd | 2 +-
man/RHRV-package.Rd | 4 ++--
man/ReadFromFile.Rd | 2 +-
man/SplitHRbyEpisodes.Rd | 2 +-
man/SplitPowerBandByEpisodes.Rd | 2 +-
man/WriteToFile.Rd | 2 +-
57 files changed, 61 insertions(+), 61 deletions(-)
Title: Functions for optimal matching
Diff between optmatch versions 0.6-1 dated 2010-02-11 and 0.7-0 dated 2010-07-30
Description: Functions for optimal matching, including full matching
Author: Ben B. Hansen
Maintainer: Ben B. Hansen
ChangeLog | 5 +++++
DESCRIPTION | 10 +++++-----
NAMESPACE | 3 ++-
NEWS | 10 ++++++++++
R/fill.NAs.R |only
R/mdist.R | 20 ++++++++++++++------
man/fill.NAs.rd |only
tests/fill.NAs.R |only
tests/mdist.R | 19 +++++++++++++++----
tests/summary.optmatch-tests.Rout.save | 12 ++++++------
10 files changed, 57 insertions(+), 22 deletions(-)
Title: Data driven smooth test
Diff between ddst versions 1.01 dated 2008-09-28 and 1.02 dated 2010-07-30
Description: Support for data driven testing
Author: Przemyslaw Biecek (R code), Teresa Ledwina (support,
descriptions)
Maintainer: Przemyslaw Biecek
DESCRIPTION | 25 ++++++++++++++-----------
data |only
man/ddst-package.Rd | 41 +++++++++++++++++++++--------------------
man/ddst.exp.test.Rd | 8 ++++----
man/ddst.extr.test.Rd | 8 ++++----
man/ddst.norm.test.Rd | 12 ++++++------
man/ddst.uniform.test.Rd | 4 ++--
7 files changed, 51 insertions(+), 47 deletions(-)
Title: Random fields simulations
Diff between FieldSim versions 3.1.2 dated 2010-06-16 and 3.1.3 dated 2010-07-30
Description: This package provides routines for simulate random fields.
Author: Alexandre Brouste
Maintainer: Alexandre Brouste
DESCRIPTION | 8 ++++----
inst |only
man/constructcovf.Rd | 8 +++++---
man/constructgrid.Rd | 4 +++-
man/fieldsim.Rd | 7 +++++--
man/quadvar.Rd | 2 +-
man/setManifold.Rd | 4 +++-
man/visualize.Rd | 4 +++-
8 files changed, 24 insertions(+), 13 deletions(-)
Title: Mixture of methods including mixtures
Diff between mixAK versions 1.0 dated 2010-06-15 and 1.1 dated 2010-07-30
Description: This package contains a mixture of statistical methods
including the MCMC methods to analyze normal mixtures
Author: Arnost Komarek
Maintainer: Arnost Komarek
DESCRIPTION | 8 +++----
R/NMixSummComp.GLMM_MCMC.R |only
R/NMixSummComp.NMixMCMC.R |only
R/NMixSummComp.R | 46 ++-------------------------------------------
R/NMixSummComp.default.R |only
inst/doc/Faithful.pdf |binary
inst/doc/Galaxy.pdf |binary
inst/doc/Tandmob.pdf |binary
man/NMixSummComp.Rd | 23 ++++++++++++++++------
man/PBCseq.Rd | 7 +++++-
10 files changed, 30 insertions(+), 54 deletions(-)
Title: Zoo of Geometric Objects
Diff between geozoo versions 0.4.1 dated 2010-06-04 and 0.4.2 dated 2010-07-30
Description: The package allows geometric objects defined in geozoo to
be displayed in GGobi through the use of rggobi.
Author: Barret Scloerke
Maintainer: Barret Scloerke
DESCRIPTION | 6 +++---
R/ggobi.r | 5 ++++-
2 files changed, 7 insertions(+), 4 deletions(-)
More information about VecStatGraphs3D at CRAN
Permanent link
Title: Graphical User Interface for SensoMineR
Diff between RcmdrPlugin.SensoMineR versions 1.11 dated 2010-07-25 and 1.11-01 dated 2010-07-30
More information about RcmdrPlugin.SensoMineR at CRAN
Description: Rcmdr Plugin for the SensoMineR package
Author: F. Husson, J. Josse, S. Le
Maintainer: Francois Husson
DESCRIPTION | 6
R/RcmdrPlugin.SensoMineR.R | 378 ++++++++++++++++++++++-----------------------
2 files changed, 192 insertions(+), 192 deletions(-)
Permanent link
Title: Adaptive Management of Epidemiological Interventions
Diff between amei versions 1.0-3 dated 2010-06-17 and 1.0-4 dated 2010-07-30
Description: This package provides a flexible statistical framework for
generating optimal epidemiological interventions that are
designed to minimize the total expected cost of an emerging
epidemic while simultaneously propagating uncertainty regarding
underlying disease parameters through to the decision process
via Bayesian posterior inference. The strategies produced
through this framework are adaptive: vaccination schedules are
iteratively adjusted to reflect the anticipated trajectory of
the epidemic given the current population state and updated
parameter estimates.
Author: Daniel Merl
Maintainer: Robert B. Gramacy
ChangeLog | 10 +++
DESCRIPTION | 8 +-
demo/amei.R | 144 ++++++++++++++++++++++++------------------------
inst/CITATION |only
inst/doc/alt_trans.iRnw | 2
inst/doc/amei.Rnw | 4 +
inst/doc/amei.bib | 48 ++++++++++------
inst/doc/amei.pdf |binary
inst/doc/jsslogo.jpg |only
man/MCepi.Rd | 20 ++++--
man/MCmanage.Rd | 20 ++++--
man/amei-package.Rd | 24 +++++---
man/epistep.Rd | 20 ++++--
man/getcost.Rd | 20 ++++--
man/getpolicy.Rd | 20 ++++--
man/manage.Rd | 20 ++++--
man/optvac.Rd | 20 ++++--
man/plot.epiman.Rd | 20 ++++--
man/plot.optvac.Rd | 20 ++++--
man/print.Rd | 20 ++++--
src/epidemics.c | 16 +++--
21 files changed, 266 insertions(+), 190 deletions(-)
Title: Interface to Unidata netCDF data files
Diff between ncdf versions 1.6.1 dated 2010-05-17 and 1.6.2 dated 2010-07-30
Description: This package provides a high-level R interface to
Unidata's netCDF data files, which are portable across
platforms and include metadata information in addition to the
data sets. Using this package netCDF files can be opened and
data sets read in easily. It is also easy to create new netCDF
dimensions, variables, and files, or manipulate existing netCDF
files. This interface provides considerably more functionality
than the old "netCDF" package for R, and is not compatible with
the old "netCDF" package for R. Release 1.2 (2005-01-24) adds
better support for character variables, and miscellaneous bug
fixes. Release 1.3 (2005-03-27) is for miscellaneous bug
fixes, and improves the documentation. Release 1.4
(2005-06-27) improves the efficiency, and adds small bug fixes.
Release 1.5 (2006-02-27) adds support for byte variables, plus
small bug fixes. Release 1.6 (2006-06-19) adds various bug
fixes, plus support for making dimensions WITHOUT dimvars
(coordinate variables), although I think this is a bad idea in
general. ALSO, the default behavior for put.var.ncdf with
unlimited variables and NO specified start and count parameters
has changed! Before, the default was to append to the end of
the existing variable. Now, the default is to assume a start
of 1 along each dimension, and a count of the current length of
each dimension. This really can be ambiguous when using an
unlimited dimension. I always specify both start and count when
writing to a variable with an unlimited dimension, and suggest
you do as well. I make require this in a future release, as it
seems to cause people problems.
Author: David Pierce
Maintainer: David Pierce
ncdf-1.6.1/ncdf/INDEX |only
ncdf-1.6.1/ncdf/R/load.R |only
ncdf-1.6.2/ncdf/DESCRIPTION | 6 +++---
ncdf-1.6.2/ncdf/a.out.dSYM |only
ncdf-1.6.2/ncdf/man/att.get.ncdf.Rd | 2 +-
ncdf-1.6.2/ncdf/man/att.put.ncdf.Rd | 2 +-
ncdf-1.6.2/ncdf/man/print.ncdf.Rd | 2 +-
ncdf-1.6.2/ncdf/man/version.ncdf.Rd | 8 +++-----
ncdf-1.6.2/ncdf/src/Makevars.win | 6 +++---
ncdf-1.6.2/ncdf/src/ncdf.c | 5 ++---
ncdf-1.6.2/ncdf/src/ncdf3.c | 5 +++--
11 files changed, 17 insertions(+), 19 deletions(-)
Title: Resampling-based multiple hypothesis testing
Diff between multtest versions 2.4.0 dated 2010-05-01 and 2.5.14 dated 2010-07-30
Description: Non-parametric bootstrap and permutation resampling-based
multiple testing procedures (including empirical Bayes methods)
for controlling the family-wise error rate (FWER), generalized
family-wise error rate (gFWER), tail probability of the
proportion of false positives (TPPFP), and false discovery rate
(FDR). Several choices of bootstrap-based null distribution
are implemented (centered, centered and scaled,
quantile-transformed). Single-step and step-wise methods are
available. Tests based on a variety of t- and F-statistics
(including t-statistics based on regression parameters from
linear and survival models as well as those based on
correlation parameters) are included. When probing hypotheses
with t-statistics, users may also select a potentially faster
null distribution which is multivariate normal with mean zero
and variance covariance matrix derived from the vector
influence function. Results are reported in terms of adjusted
p-values, confidence regions and test statistic cutoffs. The
procedures are directly applicable to identifying
differentially expressed genes in DNA microarray experiments.
Author: Katherine S. Pollard, Houston N. Gilbert, Yongchao Ge, Sandra
Taylor, Sandrine Dudoit
Maintainer: Katherine S. Pollard
DESCRIPTION | 8 ++++----
NAMESPACE | 8 ++++++++
R/EBMTP.R | 55 +++++++++++++++++++++++++++++++++++++------------------
R/EBzzz.R | 21 +++++++++++++++------
R/nulldistn_c.R | 1 +
R/statistics.R | 6 +++++-
R/test.R | 3 ++-
7 files changed, 72 insertions(+), 30 deletions(-)
Title: Analysis of Mark-Recapture data
Diff between mra versions 2.6 dated 2010-07-24 and 2.7 dated 2010-07-30
Description: Analysis of mark-recapture data using covariates. Models:
CJS open population; Huggin's closed population. Link
functions: logit, sine, hazard. Model selection and model
averaging routines. Plot methods. Simulation routine. CJS
methods produce estimates of population size using the
Horvitz-Thompson estimator.
Author: Trent McDonald
Maintainer: Trent McDonald
DESCRIPTION | 13 +++++++------
desktop.ini |only
man/F.cjs.simulate.Rd | 4 +++-
src/Mrawin.f90 | 28 ++++++++++++++--------------
4 files changed, 24 insertions(+), 21 deletions(-)
Title: Fitting finite mixture of scale mixture of skew-normal
distributions .
Diff between mixsmsn versions 0.2-5 dated 2010-07-24 and 0.2-6 dated 2010-07-30
Description: Functions to fit finite mixture of scale mixture of
skew-normal (FM-SMSN) distributions.
Author: Marcos Prates
Maintainer: Marcos Prates
ChangeLog | 7 +++++++
DESCRIPTION | 8 ++++----
R/smsn.mmix.R | 2 +-
man/smsn.mix.Rd | 2 +-
man/smsn.mmix.Rd | 2 +-
5 files changed, 14 insertions(+), 7 deletions(-)
Title: Inline C, C++, Fortran function calls from R
Diff between inline versions 0.3.5 dated 2010-06-02 and 0.3.6 dated 2010-07-30
Description: Functionality to dynamically define R functions and S4
methods with in-lined C, C++ or Fortran code supporting .C and
.Call calling conventions.
Author: Oleg Sklyar, Duncan Murdoch, Mike Smith, Dirk Eddelbuettel,
Romain Francois
Maintainer: Oleg Sklyar
DESCRIPTION | 8 ++++----
NEWS | 7 ++++++-
R/cfunction.R | 8 ++++++--
3 files changed, 16 insertions(+), 7 deletions(-)
Title: Heteroscedastic Discriminant Analysis
Diff between hda versions 0.1-8 dated 2010-07-06 and 0.1-10 dated 2010-07-30
Description: Functions to perform dimensionality reduction for
classification if the covariance matrices of the classes are
unequal.
Author: Gero Szepannek
Maintainer: Gero Szepannek
DESCRIPTION | 8 ++++----
R/hda.r | 21 +++++----------------
2 files changed, 9 insertions(+), 20 deletions(-)
Title: Examples using Rcpp to interface R and C++
Diff between RcppExamples versions 0.1.0 dated 2010-03-11 and 0.1.1 dated 2010-07-30
Description: Examples for Seamless R and C++ integration The Rcpp
package contains a C++ library that facilitates the integration
of R and C++ in various ways. This package provides examples.
Note that the documentation in this package currently does not all the
features in the package.
Author: Dirk Eddelbuettel and Romain Francois, based on code written
during 2005 and 2006 by Dominick Samperi
Maintainer: Dirk Eddelbuettel and Romain Francois
DESCRIPTION | 18 +++++++++++-------
NEWS | 4 ++++
TODO |only
inst/ChangeLog | 32 ++++++++++++++++++++++++++++++--
man/RcppDate.Rd | 11 +++--------
man/RcppParams.Rd | 5 +++++
man/RcppResultSet.Rd | 10 ----------
man/RcppVector.Rd | 10 ----------
src/Makevars | 7 ++-----
src/Makevars.win | 4 ++--
src/RcppMatrixExample.cpp | 12 ++++++++----
src/RcppStringVectorExample.cpp | 8 +++++---
src/RcppVectorExample.cpp | 10 +++++++---
13 files changed, 77 insertions(+), 54 deletions(-)
Title: Hidden Markov Models
Diff between HiddenMarkov versions 1.3-1 dated 2010-02-25 and 1.3-2 dated 2010-07-30
Description: Contains functions for the analysis of Discrete Time
Hidden Markov Models, Markov Modulated GLMs and the Markov
Modulated Poisson Process. It includes functions for
simulation, parameter estimation, and the Viterbi algorithm.
See the topic "HiddenMarkov" for an introduction to the
package, and "Changes" for a list of recent changes. The
algorithms are based of those of Walter Zucchini.
Author: David Harte
Maintainer: David Harte
DESCRIPTION | 8 ++++----
R/Viterbi.mmglm1.R |only
R/Viterbi.mmglmlong1.R |only
R/forwardback.dthmm.R | 3 ++-
R/forwardback.mmpp.R | 5 ++++-
R/logLik.dthmm.R | 27 ++++-----------------------
R/logLik.mmglm1.R | 3 ++-
R/logLik.mmglmlong1.R |only
R/logLik.mmpp.R | 40 +++-------------------------------------
R/mmglmlong1.R | 1 -
man/BaumWelch.Rd | 6 ++++--
man/Changes.Rd | 16 ++++++++++++++--
man/Estep.Rd | 4 ++++
man/Viterbi.Rd | 12 ++++++++++--
man/dthmm.Rd | 3 +++
man/forwardback.Rd | 7 ++++++-
man/logLik.Rd | 6 ++++--
man/mmglm.Rd | 13 ++++++++++---
man/mmpp-2nd-level-functions.Rd | 7 ++++++-
man/mmpp.Rd | 3 +++
tests/dthmm-mmglm1.R | 12 ++++++++++++
21 files changed, 95 insertions(+), 81 deletions(-)