Title: Recursively Partitioned Mixture Model
Diff between RPMM versions 1.05 dated 2009-11-16 and 1.06 dated 2010-08-10
Description: Recursively Partitioned Mixture Model for Beta and
Gaussian Mixtures. This is a model-based clustering algorithm
that returns a hierarchy of classes, similar to hierarchical
clustering, but also similar to finite mixture models.
Author: E. Andres Houseman, Sc.D.
Maintainer: E. Andres Houseman
DESCRIPTION | 6 +++---
man/blcSplit.Rd | 2 +-
man/glcSplit.Rd | 2 +-
3 files changed, 5 insertions(+), 5 deletions(-)
Title: R interface to last.fm API
Diff between RLastFM versions 0.1-4 dated 2009-08-28 and 0.1-5 dated 2010-08-10
Description: A package to interface to the last.fm API.
Author: Greg Hirson
Maintainer: Greg Hirson
DESCRIPTION | 6 +++---
changelog | 2 ++
man/venue.getPastEvents.Rd | 4 ++--
3 files changed, 7 insertions(+), 5 deletions(-)
Title: MCMC Generalised Linear Mixed Models
Diff between MCMCglmm versions 2.04 dated 2010-04-04 and 2.05 dated 2010-08-10
Description: MCMC Generalised Linear Mixed Models
Author: Jarrod Hadfield
Maintainer: Jarrod Hadfield
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Title: Sparse Lightweight Arrays and Matrices
Diff between slam versions 0.1-13 dated 2010-06-24 and 0.1-14 dated 2010-08-10
Description: Data structures and algorithms for sparse arrays and
matrices, based on index arrays and simple triplet
representations, respectively.
Author: Kurt Hornik, David Meyer, Christian Buchta
Maintainer: David Meyer
DESCRIPTION | 8 ++++----
NAMESPACE | 10 +++++++++-
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man/tsums.Rd |only
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7 files changed, 45 insertions(+), 5 deletions(-)
Title: Text Analysis Utilities
Diff between tau versions 0.0-8 dated 2010-08-05 and 0.0-9 dated 2010-08-10
Description: Utilities for text analysis
Author: Christian Buchta, Kurt Hornik, Ingo Feinerer, David Meyer
Maintainer: Kurt Hornik
DESCRIPTION | 8 -
R/language.R | 259 +++++++++++++++++++++++++++++++++++++++++++-------------
R/sysdata.rda |binary
man/language.Rd | 43 +++++----
4 files changed, 231 insertions(+), 79 deletions(-)
Title: Simulation framework
Diff between simFrame versions 0.2 dated 2010-06-08 and 0.3 dated 2010-08-10
Description: A general framework for statistical simulation.
Author: Andreas Alfons
Maintainer: Andreas Alfons
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simFrame-0.3/simFrame/inst/doc/figures-intro/fig-030.pdf | 31
simFrame-0.3/simFrame/inst/doc/figures-intro/fig-039.pdf | 4
simFrame-0.3/simFrame/inst/doc/figures-intro/fig-040.pdf | 31
simFrame-0.3/simFrame/inst/doc/figures-intro/fig-UML.eps | 5009 +++++---------
simFrame-0.3/simFrame/inst/doc/figures-intro/fig-UML.pdf |binary
simFrame-0.3/simFrame/inst/doc/simFrame-eusilc.Rnw | 6
simFrame-0.3/simFrame/inst/doc/simFrame-eusilc.pdf |binary
simFrame-0.3/simFrame/inst/doc/simFrame-intro.Rnw | 33
simFrame-0.3/simFrame/inst/doc/simFrame-intro.pdf |binary
simFrame-0.3/simFrame/inst/doc/simFrame.bib | 96
simFrame-0.3/simFrame/man/DataControl-class.Rd | 1
simFrame-0.3/simFrame/man/NAControl-class.Rd | 12
simFrame-0.3/simFrame/man/OptDataControl-class.Rd |only
simFrame-0.3/simFrame/man/OptSampleControl-class.Rd |only
simFrame-0.3/simFrame/man/SampleControl-class.Rd | 1
simFrame-0.3/simFrame/man/SampleSetup-class.Rd | 62
simFrame-0.3/simFrame/man/SimResults-class.Rd | 26
simFrame-0.3/simFrame/man/VirtualDataControl-class.Rd | 3
simFrame-0.3/simFrame/man/VirtualSampleControl-class.Rd | 3
simFrame-0.3/simFrame/man/accessors.Rd | 120
simFrame-0.3/simFrame/man/contaminate.Rd | 6
simFrame-0.3/simFrame/man/setNA.Rd | 7
simFrame-0.3/simFrame/man/simFrame-package.Rd | 17
simFrame-0.3/simFrame/man/tail-methods.Rd | 6
simFrame-0.3/simFrame/src/init.c | 3
simFrame-0.3/simFrame/src/simFrame.c |only
simFrame-0.3/simFrame/src/simFrame.h | 3
59 files changed, 3154 insertions(+), 3405 deletions(-)
Title: JSON for R
Diff between rjson versions 0.2.0 dated 2010-07-31 and 0.2.1 dated 2010-08-10
Description: Converts R object into JSON objects and vice-versa
Author: Alex Couture-Beil
Maintainer: Alex Couture-Beil
DESCRIPTION | 6 -
R/json.R | 86 ++++++++++++------
inst/doc/json_rpc_server.pdf |binary
inst/unittests |only
man/fromJSON.Rd | 3
man/newJSONParser.Rd | 6 +
src/parser.c | 196 ++++++++++++++++++++++++++++++++++---------
7 files changed, 226 insertions(+), 71 deletions(-)
Title: Mixture of Gaussian Bayesian Network Model
Diff between mugnet versions 0.08.1 dated 2010-05-06 and 0.13.1 dated 2010-08-10
Description: A package that models continuous multivariate data via
directional acyclic graphs and provides inference based on the
frequentist approach
Author: Nikolay Balov
Maintainer: Nikolay Balov
mugnet-0.08.1/mugnet/man/crab.Rd |only
mugnet-0.08.1/mugnet/man/mgFromCatnet.Rd |only
mugnet-0.13.1/mugnet/DESCRIPTION | 8
mugnet-0.13.1/mugnet/NAMESPACE | 2
mugnet-0.13.1/mugnet/R/mugnet.class.R | 20 +
mugnet-0.13.1/mugnet/R/mugnet.def.R | 117 ++++++++-
mugnet-0.13.1/mugnet/R/mugnet.learn.R | 41 ++-
mugnet-0.13.1/mugnet/R/mugnet.predict.R | 3
mugnet-0.13.1/mugnet/R/mugnet.sample.R | 8
mugnet-0.13.1/mugnet/data/letters.rda |only
mugnet-0.13.1/mugnet/demo/00Index | 1
mugnet-0.13.1/mugnet/demo/blung.r | 58 ++++
mugnet-0.13.1/mugnet/demo/crabs.r | 2
mugnet-0.13.1/mugnet/demo/letters.r |only
mugnet-0.13.1/mugnet/man/crabs.Rd |only
mugnet-0.13.1/mugnet/man/letters.Rd |only
mugnet-0.13.1/mugnet/man/mgBeta.Rd | 2
mugnet-0.13.1/mugnet/man/mgLoglik.Rd | 1
mugnet-0.13.1/mugnet/man/mgNetwork-class.Rd | 40 ++-
mugnet-0.13.1/mugnet/man/mgNew.Rd | 4
mugnet-0.13.1/mugnet/man/mgSearchOrder.Rd | 8
mugnet-0.13.1/mugnet/man/mgSigma.Rd | 2
mugnet-0.13.1/mugnet/src/catnet.h | 103 ++++----
mugnet-0.13.1/mugnet/src/ccnInit.c | 26 +-
mugnet-0.13.1/mugnet/src/emsearch.h | 207 ++++++++---------
mugnet-0.13.1/mugnet/src/exp.cpp |only
mugnet-0.13.1/mugnet/src/exp.h |only
mugnet-0.13.1/mugnet/src/inetparams.h | 43 +++
mugnet-0.13.1/mugnet/src/mixnet.cpp | 331 +++++++++++++++++++++-------
mugnet-0.13.1/mugnet/src/mixnet.h | 24 +-
mugnet-0.13.1/mugnet/src/mixnet_rexport.cpp | 136 +++++++++--
mugnet-0.13.1/mugnet/src/mixnet_rexport.h | 26 +-
mugnet-0.13.1/mugnet/src/poisson.cpp |only
mugnet-0.13.1/mugnet/src/poisson.h |only
mugnet-0.13.1/mugnet/src/problist.h | 46 +--
mugnet-0.13.1/mugnet/src/rexpmix.cpp |only
mugnet-0.13.1/mugnet/src/rexpmix.h |only
mugnet-0.13.1/mugnet/src/rmixnet.cpp | 37 ++-
mugnet-0.13.1/mugnet/src/rmixnet.h | 30 ++
mugnet-0.13.1/mugnet/src/rpoissonmix.cpp |only
mugnet-0.13.1/mugnet/src/rpoissonmix.h |only
mugnet-0.13.1/mugnet/src/rsearch.cpp | 134 ++++++++---
mugnet-0.13.1/mugnet/src/rsearch.h | 24 +-
mugnet-0.13.1/mugnet/src/utils.cpp | 32 ++
mugnet-0.13.1/mugnet/src/utils.h | 19 +
45 files changed, 1127 insertions(+), 408 deletions(-)
Title: Foreach parallel adaptor for the Rmpi package
Diff between doMPI versions 0.1-4 dated 2010-01-14 and 0.1-5 dated 2010-08-10
Description: Provides a parallel backend for the %dopar% function using
the Rmpi package.
Author: Steve Weston
Maintainer: Steve Weston
DESCRIPTION | 8 ++++----
NEWS | 3 +++
inst/doc/doMPI.pdf |binary
man/openMPIcluster.Rd | 2 +-
4 files changed, 8 insertions(+), 5 deletions(-)
Title: Conditional Inference Procedures in a Permutation Test Framework
Diff between coin versions 1.0-12 dated 2010-07-03 and 1.0-14 dated 2010-08-10
Description: Conditional inference procedures for the general
independence problem including two-sample, K-sample
(non-parametric ANOVA), correlation, censored, ordered and
multivariate problems.
Author: Torsten Hothorn, Kurt Hornik, Mark A. van de Wiel and Achim
Zeileis
Maintainer: Torsten Hothorn
DESCRIPTION | 11 +++----
NEWS | 12 +++++++
R/ClassicalTests.R | 2 -
R/InitMethods.R | 3 +
R/helpers.R | 4 +-
inst/doc/LegoCondInf.pdf |binary
inst/doc/MAXtest.pdf |binary
inst/doc/coin.pdf |binary
inst/doc/coin_implementation.pdf |binary
man/IndependenceTest.Rd | 2 -
tests/Examples/coin-Ex.Rout.save | 14 ++++++---
tests/bugfixes.R | 29 +++++++++++++++++++
tests/bugfixes.Rout.save | 59 +++++++++++++++++++++++++++++++++++++--
13 files changed, 120 insertions(+), 16 deletions(-)
Title: Basic wavelet analysis of multivariate time series with a
visualisation and parametrisation using graph theory.
Diff between brainwaver versions 1.4 dated 2007-06-14 and 1.5 dated 2010-08-10
Description: This package computes the correlation matrix for each
scale of a wavelet decomposition, namely the one performed by
the R package waveslim (Whitcher, 2000). An hypothesis test is
applied to each entry of one matrix in order to construct an
adjacency matrix of a graph. The graph obtained is finally
analysed using the small-world theory (Watts and Strogatz,
1998) and using the computation of efficiency (Latora, 2001),
tested using simulated attacks. The brainwaver project is
complementary to the camba project for brain-data
preprocessing. A collection of scripts (with a makefile) is
avalaible to download along with the brainwaver package, see
information on the webpage mentioned below.
Author: Sophie Achard
Maintainer: Sophie Achard
brainwaver-1.4/brainwaver/src/connexity.c |only
brainwaver-1.4/brainwaver/src/small-world.c |only
brainwaver-1.5/brainwaver/DESCRIPTION | 40 ++++++-----
brainwaver-1.5/brainwaver/R/const.adj.list.R | 4 -
brainwaver-1.5/brainwaver/man/brain.Rd | 3
brainwaver-1.5/brainwaver/man/choose.thresh.nbedges.Rd | 1
brainwaver-1.5/brainwaver/man/compute.FDR.Rd | 1
brainwaver-1.5/brainwaver/man/const.adj.list.Rd | 1
brainwaver-1.5/brainwaver/man/const.adj.mat.Rd | 1
brainwaver-1.5/brainwaver/man/const.var.list.Rd | 1
brainwaver-1.5/brainwaver/man/correlations.to.adjacencies.Rd | 2
brainwaver-1.5/brainwaver/man/equadist.rand.sw.Rd | 1
brainwaver-1.5/brainwaver/man/fitting.Rd | 9 --
brainwaver-1.5/brainwaver/man/rand.eff.Rd | 2
brainwaver-1.5/brainwaver/man/rand.sw.Rd | 3
brainwaver-1.5/brainwaver/man/random.attack.Rd | 2
brainwaver-1.5/brainwaver/man/read.convert_1_2.Rd | 3
brainwaver-1.5/brainwaver/man/read.cor.txt.Rd | 1
brainwaver-1.5/brainwaver/man/read.var.txt.Rd | 1
brainwaver-1.5/brainwaver/man/reg.sw.Rd | 3
brainwaver-1.5/brainwaver/man/sim.rand.Rd | 2
brainwaver-1.5/brainwaver/man/small.world.Rd | 6 -
brainwaver-1.5/brainwaver/man/wave.trans.Rd | 3
brainwaver-1.5/brainwaver/man/young.Rd | 3
brainwaver-1.5/brainwaver/src/connexity_small_world.c |only
25 files changed, 27 insertions(+), 66 deletions(-)
Title: R Commander Plugin for (industrial) Design of Experiments
Diff between RcmdrPlugin.DoE versions 0.6-14 dated 2010-06-04 and 0.8 dated 2010-08-10
More information about RcmdrPlugin.DoE at CRAN
Description: WARNING: This package is currently in beta status! The
package provides a platform-independent GUI for design of
experiments. It is implemented as a plugin to the R-Commander,
which is a more general graphical user interface for statistics
in R based on tcl/tk. DoE functionality can be accessed through
the menu Design that is added to the R-Commander menus.
Author: Ulrike Groemping
Maintainer: Ulrike Groemping
DESCRIPTION | 13 +++---
R/Menu.Dopt.r |only
R/Menu.bbd.r | 29 +++++++++++---
R/Menu.cand.r |only
R/Menu.ccd.r | 40 +++++++++++++------
R/Menu.contour.R |only
R/Menu.lhs.R | 33 ++++++++++++----
R/Menu.linearModelDesign.R | 14 +++---
R/Menu.model.R | 4 -
R/Menu.rsm.R |only
R/Menu.rsmmodel.R |only
R/Menu.steepest.R |only
R/checkers.R | 19 +++++++++
R/fpairsc.R |only
R/listObjects.R | 10 ++++
R/menu.defaults.R | 9 ++++
R/menushelp.R | 5 ++
R/modelFormulaDoE.R |only
R/rsmFormula.R |only
R/subsetBoxDoE.R |only
inst/NEWS | 57 ++++++++++++++++++----------
inst/etc/menus.txt | 40 ++++++-------------
man/Menu.Analyze.Rd | 24 ++++++++++-
man/Menu.Dopt.Rd |only
man/Menu.DoptTab1.rd |only
man/Menu.Optimal.Rd |only
man/Menu.QuantDesignAnalyze.Rd | 19 +++++++--
man/Menu.Quantitative.Rd | 8 +--
man/Menu.ccdTab1.rd | 10 +++-
man/Menu.contour.Rd |only
man/Menu.rsm.Rd |only
man/Menu.rsmmodel.Rd |only
man/Menu.steepest.Rd |only
man/RcmdrPlugin.DoE-package.Rd | 24 ++++++-----
man/RcmdrPlugin.DoEUndocumentedFunctions.Rd | 27 ++++++++++++-
35 files changed, 274 insertions(+), 111 deletions(-)
Permanent link
Title: Wrapper package for design of experiments functionality
Diff between DoE.wrapper versions 0.7-2 dated 2010-06-02 and 0.8 dated 2010-08-10
Description: This package creates various kinds of designs for
(industrial) experiments. It uses, and sometimes enhances,
design generation routines from other packages. Initially,
response surface designs from package rsm and latin hypercube
samples from package lhs have been implemented.
Author: Ulrike Groemping
Maintainer: Ulrike Groemping
DESCRIPTION | 14 ++++-----
NAMESPACE | 2 -
R/Dopt.augment.R | 4 +-
R/Dopt.design.R | 12 ++++++--
R/bbd.design.R | 1
R/code.design.R |only
R/lhs.design.R | 13 ++++++--
R/rsm.design.R |only
R/rsmformula.R |only
inst/NEWS | 33 ++++++++++++++--------
man/bbd.design.Rd | 3 +-
man/ccd.augment.Rd | 7 +++-
man/ccd.design.Rd | 4 ++
man/lhs.design.Rd | 13 ++++++--
man/rsmformula.Rd |only
tests/bbd.test.Rout.save | 68 ++++++++++++++++++++++++++---------------------
16 files changed, 110 insertions(+), 64 deletions(-)
Title: A Device for R Graphics Output in PGF/TikZ Format
Diff between tikzDevice versions 0.4.8 dated 2009-09-29 and 0.5.0 dated 2010-08-10
Description: The TikZ device enables LaTeX-ready output from R graphics
functions. This is done by producing code that can be
understood by the TikZ graphics language. All text in a graphic
output with the tikz() function will can be typeset by LaTeX
and therefore will match whatever fonts are currently used in
the document. This also means that LaTeX mathematics can be
typeset directly into labels and annotations! Graphics
produced this way can also be annotated with custom TikZ
commands.
Author: Charlie Sharpsteen and Cameron Bracken
Maintainer: The tikzDevice team
tikzDevice-0.4.8/tikzDevice/R/stringStash.R |only
tikzDevice-0.4.8/tikzDevice/README |only
tikzDevice-0.5.0/tikzDevice/DESCRIPTION | 11
tikzDevice-0.5.0/tikzDevice/NAMESPACE | 2
tikzDevice-0.5.0/tikzDevice/R/cacheMetrics.R |only
tikzDevice-0.5.0/tikzDevice/R/deviceUtils.R |only
tikzDevice-0.5.0/tikzDevice/R/latexStrWidth.R | 6
tikzDevice-0.5.0/tikzDevice/R/sanitizeTexString.R |only
tikzDevice-0.5.0/tikzDevice/R/tikz.R | 72
tikzDevice-0.5.0/tikzDevice/R/tikzAnnotate.R | 23
tikzDevice-0.5.0/tikzDevice/R/zzz.R | 195 -
tikzDevice-0.5.0/tikzDevice/README.md |only
tikzDevice-0.5.0/tikzDevice/TODO |only
tikzDevice-0.5.0/tikzDevice/inst/doc/tikzDevice.Rnw | 271 +
tikzDevice-0.5.0/tikzDevice/inst/doc/tikzDevice.pdf |binary
tikzDevice-0.5.0/tikzDevice/inst/doc/tikzDeviceMacros.tex | 3
tikzDevice-0.5.0/tikzDevice/inst/tests/run-tests.bat |only
tikzDevice-0.5.0/tikzDevice/inst/tests/run-tests.sh | 2
tikzDevice-0.5.0/tikzDevice/inst/tests/testRTikZDevice.R | 55
tikzDevice-0.5.0/tikzDevice/man/sanitizeTexString.Rd |only
tikzDevice-0.5.0/tikzDevice/man/setTikzDefaults.Rd | 10
tikzDevice-0.5.0/tikzDevice/man/tikz.Rd | 109
tikzDevice-0.5.0/tikzDevice/man/tikzAnnotate.Rd | 18
tikzDevice-0.5.0/tikzDevice/src/tikzDevice.c | 2500 +++++++-------
tikzDevice-0.5.0/tikzDevice/src/tikzDevice.h | 70
25 files changed, 1905 insertions(+), 1442 deletions(-)
Title: Spatial Point Pattern analysis, model-fitting, simulation, tests
Diff between spatstat versions 1.20-1 dated 2010-07-26 and 1.20-2 dated 2010-08-10
Description: A package for analysing spatial data, mainly Spatial Point
Patterns, including multitype/marked points and spatial
covariates, in any two-dimensional spatial region. Also
supports three-dimensional point patterns, and space-time point
patterns in any number of dimensions. Contains functions for
plotting spatial data, exploratory data analysis,
model-fitting, simulation, spatial sampling, model diagnostics,
and formal inference. Data types include point patterns, line
segment patterns, spatial windows, pixel images and
tessellations. Point process models can be fitted to point
pattern data. Cluster type models are fitted by the method of
minimum contrast. Very general Gibbs point process models can
be fitted to point pattern data using a function ppm similar to
lm or glm. Models may include dependence on covariates,
interpoint interaction and dependence on marks. Fitted models
can be simulated automatically. Also provides facilities for
formal inference (such as chi-squared tests) and model
diagnostics (including simulation envelopes, residuals,
residual plots and Q-Q plots).
Author: Adrian Baddeley
Maintainer: Adrian Baddeley
DESCRIPTION | 10 -
NEWS | 67 ++++++++
R/as.im.R | 14 +
R/defaultwin.R | 7
R/distfun.R | 40 ++++-
R/envelope.R | 4
R/kppm.R | 59 ++++---
R/mincontrast.R | 233 +++++++++++++++++++++++++++--
R/mpl.R | 14 +
R/pcf.R | 16 --
R/rmh.default.R | 68 ++++++--
R/rmhmodel.R | 293 +++++++++++++++++++++++++++++++++++--
R/rmhmodel.ppm.R | 115 +++++++++++---
R/summary.ppm.R | 4
R/util.S | 31 +++
inst/doc/shapefiles.pdf |binary
man/default.expand.Rd |only
man/distfun.Rd | 6
man/envelope.Rd | 5
man/internal.Rd | 12 -
man/kppm.Rd | 54 +++++-
man/lgcp.estK.Rd | 16 +-
man/lgcp.estpcf.Rd |only
man/matclust.estK.Rd | 7
man/matclust.estpcf.Rd |only
man/methods.distfun.Rd |only
man/pairwise.family.Rd | 2
man/plot.kppm.Rd | 6
man/ppm.Rd | 10 -
man/spatstat-package.Rd | 7
man/thomas.estK.Rd | 9 -
man/thomas.estpcf.Rd |only
src/geyer.c | 4
src/lennard.c | 24 +--
src/methas.c | 377 ++++++++++++++++--------------------------------
src/mhloop.h |only
src/strauss.c | 4
37 files changed, 1091 insertions(+), 427 deletions(-)
Title: Partial Least Squares Data Analysis Methods
Diff between plspm versions 0.1-10 dated 2010-07-27 and 0.1-11 dated 2010-08-10
Description: Partial Least Squares (PLS) methods with emphasis on
structural equation models with latent variables.
Author: Gaston Sanchez
Maintainer: Gaston Sanchez
DESCRIPTION | 8 -
R/plspm-internal.R | 320 ---------------------------------------------------
man/plspm-package.Rd | 4
3 files changed, 6 insertions(+), 326 deletions(-)
Title: Quality speedy graphics compilation with Sweave
Diff between pgfSweave versions 1.0.5 dated 2010-04-12 and 1.0.6 dated 2010-08-10
Description: The pgfSweave package provides capabilities for 'caching'
graphics generated with Sweave. Using pgfSweave, figure labels
are converted to LaTeX strings so not only do they match the
style of the document but math can be put in labels. pgfSweave
provides a new driver for Sweave (pgfSweaveDriver) and new
chunk options tikz, pgf and external on top of the cache option
provided by cacheSweave. This package is built upon cacheSweave
and therefore also Sweave.
Author: Cameron Bracken
Maintainer: Cameron Bracken
pgfSweave-1.0.5/pgfSweave/README |only
pgfSweave-1.0.6/pgfSweave/.gitignore |only
pgfSweave-1.0.6/pgfSweave/ChangeLog | 24 ++
pgfSweave-1.0.6/pgfSweave/DESCRIPTION | 10 -
pgfSweave-1.0.6/pgfSweave/NEWS | 8
pgfSweave-1.0.6/pgfSweave/R/pgfSweaveDriver.R | 78 ++++++++
pgfSweave-1.0.6/pgfSweave/README.md |only
pgfSweave-1.0.6/pgfSweave/inst/doc/figs/fig-normalSweave.pdf | 87 ++++------
pgfSweave-1.0.6/pgfSweave/inst/doc/figs/fig-pgfSweave-hist.pdf |binary
pgfSweave-1.0.6/pgfSweave/inst/doc/figs/fig-pgfSweave-tikz-hist.pdf |binary
pgfSweave-1.0.6/pgfSweave/inst/doc/pgfSweave-example.pdf |binary
pgfSweave-1.0.6/pgfSweave/inst/doc/pgfSweave.pdf |binary
12 files changed, 150 insertions(+), 57 deletions(-)
Title: Model-Based Clustering / Normal Mixture Modeling
Diff between mclust versions 3.4.5 dated 2010-07-24 and 3.4.6 dated 2010-08-10
Description: Model-based clustering and normal mixture modeling
including Bayesian regularization
Author: Chris Fraley and Adrian Raftery
Maintainer: Chris Fraley
mclust-3.4.5/mclust/core |only
mclust-3.4.6/mclust/CHANGELOG | 2 ++
mclust-3.4.6/mclust/DESCRIPTION | 8 ++++----
mclust-3.4.6/mclust/man/Mclust.Rd | 21 +++++++++++++++++++++
mclust-3.4.6/mclust/man/summary.mclustBIC.Rd | 21 +++++++++++++++++++++
5 files changed, 48 insertions(+), 4 deletions(-)
Title: Spatial prediction for function value data
Diff between geofd versions 0.4.5 dated 2010-06-11 and 0.4.6 dated 2010-08-10
Description: Prediction for function value spatial data using kriging
based methods
Author: Ramon Giraldo
Maintainer: Andres Perez
geofd-0.4.5/geofd/R/variofit.okfd.R |only
geofd-0.4.5/geofd/R/variog.okfd.R |only
geofd-0.4.5/geofd/inst/unitTests/runit.variofit.okfd.R |only
geofd-0.4.5/geofd/inst/unitTests/runit.variog.okfd.R |only
geofd-0.4.5/geofd/man/variofit.okfd.Rd |only
geofd-0.4.5/geofd/man/variog.okfd.Rd |only
geofd-0.4.6/geofd/.hgignore | 2
geofd-0.4.6/geofd/DESCRIPTION | 8
geofd-0.4.6/geofd/INDEX | 4
geofd-0.4.6/geofd/R/fit.tracevariog.R |only
geofd-0.4.6/geofd/R/geofd.viewer.R | 4
geofd-0.4.6/geofd/R/l2.norm.R | 1
geofd-0.4.6/geofd/R/okfd.R | 211 +++++----------
geofd-0.4.6/geofd/R/okfd.cv.R | 36 +-
geofd-0.4.6/geofd/R/trace.variog.R |only
geofd-0.4.6/geofd/inst/doc/ToDo.geofd | 6
geofd-0.4.6/geofd/inst/unitTests/runit.fit.tracevariog.R |only
geofd-0.4.6/geofd/inst/unitTests/runit.trace.variog.R |only
geofd-0.4.6/geofd/man/fit.tracevariog.Rd |only
geofd-0.4.6/geofd/man/geofd-package.Rd | 18 -
geofd-0.4.6/geofd/man/l2.norm.Rd | 15 -
geofd-0.4.6/geofd/man/okfd.Rd | 134 ++++-----
geofd-0.4.6/geofd/man/okfd.cv.Rd | 36 ++
geofd-0.4.6/geofd/man/trace.variog.Rd |only
24 files changed, 236 insertions(+), 239 deletions(-)
Title: Flexible procedures for clustering
Diff between fpc versions 1.2-7 dated 2009-11-16 and 2.0-1 dated 2010-08-10
Description: Various methods for clustering and cluster validation.
Fixed point clustering. Linear regression clustering.
Clustering by merging Gaussian mixture components. Symmetric
and asymmetric discriminant projections for visualisation of
the separation of groupings. Cluster validation statistics for
distance based clustering including corrected Rand index.
Clusterwise cluster stability assessment. Methods for
estimation of the number of clusters: Calinski-Harabasz,
Tibshirani and Walther's prediction strength.
Gaussian/multinomial mixture fitting for mixed
continuous/categorical variables. Veriablewise statistics for
cluster interpretation. DBSCAN clustering. Interface functions
for many clustering methods implemented in R, including
estimating the number of clusters with kmeans, pam and clara.
Modality diagnosis for Gaussian mixtures. Note that the use of
the package mclust (called by function prabclust) is protected
by a special license, see
http://www.stat.washington.edu/mclust/license.txt.
Author: Christian Hennig
Maintainer: Christian Hennig
fpc-1.2-7/fpc/tests/examples.R |only
fpc-1.2-7/fpc/tests/examples.Rout.save |only
fpc-2.0-1/fpc/DESCRIPTION | 49 +--
fpc-2.0-1/fpc/R/addclustermethods.R | 359 ++++++++++++++++++++++---
fpc-2.0-1/fpc/R/clusterboot.R | 121 +++++++-
fpc-2.0-1/fpc/R/fpc.R | 7
fpc-2.0-1/fpc/R/lcmixed.R |only
fpc-2.0-1/fpc/R/mergenormals.R |only
fpc-2.0-1/fpc/R/rFace.R | 300 ++++++++++----------
fpc-2.0-1/fpc/man/bhattacharyya.dist.Rd |only
fpc-2.0-1/fpc/man/bhattacharyya.matrix.Rd |only
fpc-2.0-1/fpc/man/calinhara.Rd |only
fpc-2.0-1/fpc/man/cat2bin.Rd |only
fpc-2.0-1/fpc/man/clucols.Rd |only
fpc-2.0-1/fpc/man/cluster.stats.Rd | 29 +-
fpc-2.0-1/fpc/man/cluster.varstats.Rd |only
fpc-2.0-1/fpc/man/clusterboot.Rd | 9
fpc-2.0-1/fpc/man/confusion.Rd |only
fpc-2.0-1/fpc/man/dbscan.Rd | 5
fpc-2.0-1/fpc/man/dip.pvalue.Rd |only
fpc-2.0-1/fpc/man/dipp.tantrum.Rd |only
fpc-2.0-1/fpc/man/diptest.multi.Rd |only
fpc-2.0-1/fpc/man/discrete.recode.Rd |only
fpc-2.0-1/fpc/man/distancefactor.Rd |only
fpc-2.0-1/fpc/man/dridgeline.Rd |only
fpc-2.0-1/fpc/man/dudahart2.Rd |only
fpc-2.0-1/fpc/man/extract.mixturepars.Rd |only
fpc-2.0-1/fpc/man/fixreg.Rd | 2
fpc-2.0-1/fpc/man/flexmixedruns.Rd |only
fpc-2.0-1/fpc/man/jittervar.Rd |only
fpc-2.0-1/fpc/man/kmeansCBI.Rd | 35 ++
fpc-2.0-1/fpc/man/kmeansruns.Rd | 50 ++-
fpc-2.0-1/fpc/man/lcmixed.Rd |only
fpc-2.0-1/fpc/man/mergenormals.Rd |only
fpc-2.0-1/fpc/man/mergeparameters.Rd |only
fpc-2.0-1/fpc/man/mixdens.Rd |only
fpc-2.0-1/fpc/man/mixpredictive.Rd |only
fpc-2.0-1/fpc/man/pamk.Rd | 46 ++-
fpc-2.0-1/fpc/man/piridge.Rd |only
fpc-2.0-1/fpc/man/piridge.zeroes.Rd |only
fpc-2.0-1/fpc/man/plotcluster.Rd | 5
fpc-2.0-1/fpc/man/prediction.strength.Rd |only
fpc-2.0-1/fpc/man/rFace.Rd | 2
fpc-2.0-1/fpc/man/regmix.Rd | 6
fpc-2.0-1/fpc/man/ridgeline.Rd |only
fpc-2.0-1/fpc/man/ridgeline.diagnosis.Rd |only
fpc-2.0-1/fpc/man/unimodal.ind.Rd |only
fpc-2.0-1/fpc/man/weightplots.Rd |only
fpc-2.0-1/fpc/man/zmisclassification.matrix.Rd |only
fpc-2.0-1/fpc/tests/fpctests.R |only
50 files changed, 754 insertions(+), 271 deletions(-)
More information about futile.paradigm at CRAN
Permanent link
Title: Categorical Bayesian Network Inference
Diff between catnet versions 1.02.0 dated 2010-04-13 and 1.08.1 dated 2010-08-10
Description: A package that handles discrete Bayesian network models
and provides inference using the frequentist approach
Author: Nikolay Balov, Peter Salzman
Maintainer: Nikolay Balov
catnet-1.02.0/catnet/R/catnet.class2search.R |only
catnet-1.02.0/catnet/man/cnSearchHistCluster.Rd |only
catnet-1.02.0/catnet/man/cnSearchSAcluster.Rd |only
catnet-1.02.0/catnet/src/catnet_class2search.h |only
catnet-1.02.0/catnet/src/rcatnet_class2search.cpp |only
catnet-1.02.0/catnet/src/rcatnet_class2search.h |only
catnet-1.08.1/catnet/DESCRIPTION | 16
catnet-1.08.1/catnet/NAMESPACE | 10
catnet-1.08.1/catnet/R/catnet.class.R | 31
catnet-1.08.1/catnet/R/catnet.dags.R | 33
catnet-1.08.1/catnet/R/catnet.def.R | 310 ++-----
catnet-1.08.1/catnet/R/catnet.dist.R | 55 -
catnet-1.08.1/catnet/R/catnet.histo.R |only
catnet-1.08.1/catnet/R/catnet.infer.R | 221 ++---
catnet-1.08.1/catnet/R/catnet.plot.R |only
catnet-1.08.1/catnet/R/catnet.probs.R | 10
catnet-1.08.1/catnet/R/catnet.samples.R | 147 +++
catnet-1.08.1/catnet/R/catnet.search.R | 749 +++++++------------
catnet-1.08.1/catnet/demo/00Index | 1
catnet-1.08.1/catnet/demo/alarm.r | 57 -
catnet-1.08.1/catnet/demo/test.r |only
catnet-1.08.1/catnet/inst/doc/catnet.Rnw | 213 +++--
catnet-1.08.1/catnet/inst/doc/catnet.pdf |binary
catnet-1.08.1/catnet/man/catNetworkDistance-class.Rd | 3
catnet-1.08.1/catnet/man/catNetworkEvaluate-class.Rd | 3
catnet-1.08.1/catnet/man/catnet-package.Rd | 1
catnet-1.08.1/catnet/man/cnCluster.Rd |only
catnet-1.08.1/catnet/man/cnCompare.Rd | 21
catnet-1.08.1/catnet/man/cnDiscretize.Rd | 22
catnet-1.08.1/catnet/man/cnDot.Rd | 26
catnet-1.08.1/catnet/man/cnNodeLoglik.Rd | 7
catnet-1.08.1/catnet/man/cnNodeSampleLoglik.Rd |only
catnet-1.08.1/catnet/man/cnParents.Rd | 7
catnet-1.08.1/catnet/man/cnPlot.Rd | 7
catnet-1.08.1/catnet/man/cnPredict.Rd | 3
catnet-1.08.1/catnet/man/cnProb.Rd | 27
catnet-1.08.1/catnet/man/cnSearchHist.Rd | 16
catnet-1.08.1/catnet/man/cnSearchOrder.Rd | 27
catnet-1.08.1/catnet/man/cnSearchSA.Rd | 54 -
catnet-1.08.1/catnet/src/Makevars |only
catnet-1.08.1/catnet/src/Makevars.win |only
catnet-1.08.1/catnet/src/cache.cpp |only
catnet-1.08.1/catnet/src/cache.h |only
catnet-1.08.1/catnet/src/catnet_class.h | 278 ++++++-
catnet-1.08.1/catnet/src/catnet_rexport.cpp | 266 ++++++
catnet-1.08.1/catnet/src/catnet_rexport.h | 43 -
catnet-1.08.1/catnet/src/catnet_search.h | 442 +++++++----
catnet-1.08.1/catnet/src/catnet_search2.h |only
catnet-1.08.1/catnet/src/ccnInit.c | 26
catnet-1.08.1/catnet/src/problist.h | 35
catnet-1.08.1/catnet/src/pthread.cpp |only
catnet-1.08.1/catnet/src/rcatnet.cpp | 24
catnet-1.08.1/catnet/src/rcatnet.h | 19
catnet-1.08.1/catnet/src/rcatnet_hist.cpp |only
catnet-1.08.1/catnet/src/rcatnet_hist.h |only
catnet-1.08.1/catnet/src/rcatnet_sa.cpp |only
catnet-1.08.1/catnet/src/rcatnet_sa.h |only
catnet-1.08.1/catnet/src/rcatnet_search.cpp | 412 ++--------
catnet-1.08.1/catnet/src/rcatnet_search.h | 43 -
catnet-1.08.1/catnet/src/search_params.h |only
catnet-1.08.1/catnet/src/thread.h |only
catnet-1.08.1/catnet/src/utils.cpp | 19
catnet-1.08.1/catnet/src/utils.h | 76 +
63 files changed, 2126 insertions(+), 1634 deletions(-)
Title: A Package for Running jags from R
Diff between R2jags versions 0.02-08 dated 2010-05-23 and 0.02-09 dated 2010-08-10
Description: Using this package to call jags from R.
Author: Yu-Sung Su
Maintainer: Yu-Sung Su
CHANGELOG | 5 ++++
DESCRIPTION | 8 +++----
R/jags.R | 62 +++++++++++++++++++-----------------------------------------
man/jags.Rd | 6 +++--
4 files changed, 33 insertions(+), 48 deletions(-)
Title: Facilitates automated HTML report creation
Diff between HTMLUtils versions 0.1.3 dated 2009-07-02 and 0.1.4 dated 2010-08-10
Description: Facilitates automated HTML report creation, in particular
framed HTML pages and dynamically sortable tables.
Author: Markus Loecher, Sense Networks
Maintainer: Markus Loecher, Sense Networks
HTMLUtils-0.1.3/HTMLUtils/Read-and-delete-me |only
HTMLUtils-0.1.4/HTMLUtils/DESCRIPTION | 8 +++---
HTMLUtils-0.1.4/HTMLUtils/R/BasicHTML.R | 25 +++++++++++++++++++--
HTMLUtils-0.1.4/HTMLUtils/R/FramedHTML.R | 4 +--
HTMLUtils-0.1.4/HTMLUtils/man/BasicHTML.Rd | 3 +-
HTMLUtils-0.1.4/HTMLUtils/man/CairoWorks.Rd | 4 +--
HTMLUtils-0.1.4/HTMLUtils/man/FramedHTML.Rd | 3 +-
HTMLUtils-0.1.4/HTMLUtils/man/HTMLUtils-package.Rd | 4 +--
HTMLUtils-0.1.4/HTMLUtils/man/HTMLsortedTable.Rd | 12 +++++-----
HTMLUtils-0.1.4/HTMLUtils/man/MyReportBegin.Rd | 6 ++---
HTMLUtils-0.1.4/HTMLUtils/man/MyReportEnd.Rd | 2 -
HTMLUtils-0.1.4/HTMLUtils/man/makePathName.Rd | 6 ++---
HTMLUtils-0.1.4/HTMLUtils/man/myHTMLInitFile.Rd | 10 ++++----
13 files changed, 55 insertions(+), 32 deletions(-)