Title: Geographic analysis and modeling with raster data
Diff between raster versions 1.3-4 dated 2010-07-27 and 1.3-11 dated 2010-08-12
Description: Package for reading, writing, and manipulating raster
(grid) type geographic (spatial) data
Author: Robert J. Hijmans & Jacob van Etten
Maintainer: Robert J. Hijmans
raster-1.3-11/raster/ChangeLog | 33 +++
raster-1.3-11/raster/DESCRIPTION | 12 -
raster-1.3-11/raster/R/AAAClasses.R | 10
raster-1.3-11/raster/R/artith.R | 18 +
raster-1.3-11/raster/R/bands.R | 2
raster-1.3-11/raster/R/canProcessInMemory.R | 10
raster-1.3-11/raster/R/cellValues.R | 30 +-
raster-1.3-11/raster/R/clearValues.R | 6
raster-1.3-11/raster/R/click.R | 2
raster-1.3-11/raster/R/clump.R | 15 -
raster-1.3-11/raster/R/clump2.R | 98 ++++++--
raster-1.3-11/raster/R/crop.R | 16 +
raster-1.3-11/raster/R/dataType.R | 2
raster-1.3-11/raster/R/doubleIndex.R | 6
raster-1.3-11/raster/R/doubleIndexMultLayer.R | 6
raster-1.3-11/raster/R/filename.R | 6
raster-1.3-11/raster/R/getOptions.R | 33 +--
raster-1.3-11/raster/R/interpolate.R | 2
raster-1.3-11/raster/R/layerNames.R | 6
raster-1.3-11/raster/R/modalRaster.R | 4
raster-1.3-11/raster/R/netCDFread.R | 35 +--
raster-1.3-11/raster/R/netCDFreadCells.R | 24 --
raster-1.3-11/raster/R/netCDFtoRasterCD.R | 274 +++++++++++++++----------
raster-1.3-11/raster/R/netCDFtoRasterRST.R | 35 +--
raster-1.3-11/raster/R/netCDFtoStack.R | 26 --
raster-1.3-11/raster/R/netCDFutil.R | 26 +-
raster-1.3-11/raster/R/netCDFwriteCD.R | 66 ++----
raster-1.3-11/raster/R/netCDFwriteRST.R | 73 +++---
raster-1.3-11/raster/R/plotCT.R | 38 ++-
raster-1.3-11/raster/R/plotRGB.R | 13 -
raster-1.3-11/raster/R/pointdistance.R | 2
raster-1.3-11/raster/R/polygonToRaster.R | 6
raster-1.3-11/raster/R/projection.R | 2
raster-1.3-11/raster/R/properties.R | 2
raster-1.3-11/raster/R/raster.R | 2
raster-1.3-11/raster/R/rasterFromFile.R | 2
raster-1.3-11/raster/R/rasterToPoints.R | 2
raster-1.3-11/raster/R/removeRasterFile.R | 7
raster-1.3-11/raster/R/sampleRandom.R | 161 ++++++++++----
raster-1.3-11/raster/R/sampleRegular.R | 2
raster-1.3-11/raster/R/saveOptions.R | 25 +-
raster-1.3-11/raster/R/setExtent.R | 41 ++-
raster-1.3-11/raster/R/setOptions.R | 13 -
raster-1.3-11/raster/R/setRowCol.R | 2
raster-1.3-11/raster/R/show.R | 6
raster-1.3-11/raster/R/singleIndex.R | 4
raster-1.3-11/raster/R/stack.R | 6
raster-1.3-11/raster/R/subs.R | 18 +
raster-1.3-11/raster/R/values.R | 24 --
raster-1.3-11/raster/R/writeBrick.R | 2
raster-1.3-11/raster/R/xyValues.R | 8
raster-1.3-11/raster/R/xyValuesBuffer.R | 2
raster-1.3-11/raster/R/zoom.R | 4
raster-1.3-11/raster/R/zzz.R | 2
raster-1.3-11/raster/inst/doc/Raster.Rnw | 45 +++-
raster-1.3-11/raster/inst/doc/Raster.pdf |binary
raster-1.3-11/raster/inst/doc/functions.Rnw | 35 +--
raster-1.3-11/raster/inst/doc/functions.pdf |binary
raster-1.3-11/raster/inst/doc/rasterfile.pdf |binary
raster-1.3-11/raster/inst/external/rlogo.grd | 2
raster-1.3-11/raster/man/Arith-methods.Rd | 13 -
raster-1.3-11/raster/man/Math-methods.Rd | 1
raster-1.3-11/raster/man/Summary-methods.Rd | 1
raster-1.3-11/raster/man/as.logical-methods.Rd | 2
raster-1.3-11/raster/man/cellValues.Rd | 4
raster-1.3-11/raster/man/clump.Rd | 7
raster-1.3-11/raster/man/getData.Rd | 6
raster-1.3-11/raster/man/plot.Rd | 6
raster-1.3-11/raster/man/raster.Rd | 9
raster-1.3-11/raster/man/rasterFromCells.Rd | 4
raster-1.3-11/raster/man/rasterOptions.Rd | 5
raster-1.3-11/raster/man/replacement.Rd | 7
raster-1.3-11/raster/man/sample.Rd | 7
raster-1.3-11/raster/man/setExtent.Rd | 4
raster-1.3-11/raster/man/values.Rd | 10
raster-1.3-11/raster/man/writeFormats.Rd | 2
raster-1.3-11/raster/man/writeRaster.Rd | 4
raster-1.3-4/raster/R/netCDF.R |only
raster-1.3-4/raster/data |only
raster-1.3-4/raster/inst/doc/Rplots.pdf |only
80 files changed, 859 insertions(+), 587 deletions(-)
Title: Tools for reading and handling spatial objects
Diff between maptools versions 0.7-34 dated 2010-04-12 and 0.7-36 dated 2010-08-12
Description: Set of tools for manipulating and reading geographic data,
in particular ESRI shapefiles; C code used from shapelib. It
includes binary access to GSHHS shoreline files. The package
also provides interface wrappers for exchanging spatial objects
with packages such as PBSmapping, spatstat, maps, RArcInfo,
Stata tmap, WinBUGS, Mondrian, and others.
Author: Nicholas J. Lewin-Koh and Roger Bivand, contributions by Edzer
J. Pebesma, Eric Archer, Adrian Baddeley, Hans-Jörg Bibiko,
Stéphane Dray, David Forrest, Michael Friendly, Patrick
Giraudoux, Duncan Golicher, Virgilio Gómez Rubio, Patrick
Hausmann, Thomas Jagger, Sebastian P. Luque, Don MacQueen,
Andrew Niccolai, Tom Short and Ben Stabler
Maintainer: Roger Bivand
ChangeLog | 11 ++++++++++-
DESCRIPTION | 8 ++++----
R/kmlLine.R | 2 +-
R/shapelib.R | 2 ++
inst/ChangeLog | 11 ++++++++++-
man/holepolys.Rd | 11 +++++------
6 files changed, 32 insertions(+), 13 deletions(-)
Title: Data Analysis And Graphics data and functions
Diff between DAAG versions 1.01 dated 2009-11-25 and 1.02 dated 2010-08-12
Description: various data sets used in examples and exercises in the
book Maindonald, J.H. and Braun, W.J. (2003, 2007, 2010) "Data
Analysis and Graphics Using R".
Author: John Maindonald and W. John Braun
Maintainer: W. John Braun
DESCRIPTION | 10 ++---
INDEX | 14 ++++----
man/mifem.Rd | 99 ++++++++++++++++++++++++++++-----------------------------
man/onesamp.Rd | 79 +++++++++++++++++++++++----------------------
4 files changed, 102 insertions(+), 100 deletions(-)
Title: Functions and datasets for books by Jeff Gill.
Diff between BaM versions 0.98 dated 2010-07-30 and 0.98.1 dated 2010-08-12
Description: Books is "Bayesian Methods: A Social and Behavioral
Sciences Approach, Second Edition published by CRC Press, 2007"
Author: Jeff Gill
Maintainer: Jeff Gill
DESCRIPTION | 8 ++++----
man/actuarial.Rd | 1 +
2 files changed, 5 insertions(+), 4 deletions(-)
Title: Prediction of KEGG pathway membership for individual genes based
on InterPro domain signatures
Diff between gene2pathway versions 1.6.0 dated 2010-05-01 and 1.6.1 dated 2010-08-12
Description: The package takes a list of genes and predicts to which
KEGG pathway each gene maps to. This is done by looking at the
InterPro domains of each gene. Each prediction is assigned a
confidence score. The package also allows to predict connected
component membership of genes within signaling pathways.
Separate models for each organism supported by KEGG can be
trained.
Author: Holger Froehlich
Maintainer: Holger Froehlich
gene2pathway-1.6.0/gene2pathway/CITATION |only
gene2pathway-1.6.1/gene2pathway/.project |only
gene2pathway-1.6.1/gene2pathway/DESCRIPTION | 20 +-
gene2pathway-1.6.1/gene2pathway/NAMESPACE | 1
gene2pathway-1.6.1/gene2pathway/R/KEGG2Entrez.R | 21 +-
gene2pathway-1.6.1/gene2pathway/R/buildTrainingSet.R | 38 ++---
gene2pathway-1.6.1/gene2pathway/R/buildTrainingSet.signaltrans.R | 2
gene2pathway-1.6.1/gene2pathway/R/color.pathway.by.elements.R | 5
gene2pathway-1.6.1/gene2pathway/R/gene2pathway.R | 75 +++++-----
gene2pathway-1.6.1/gene2pathway/R/get.element.relations.by.pathway.R | 2
gene2pathway-1.6.1/gene2pathway/R/get.elements.by.pathway.R | 2
gene2pathway-1.6.1/gene2pathway/R/getKEGGHierarchy.R | 61 ++++++--
gene2pathway-1.6.1/gene2pathway/R/retrain.R | 6
gene2pathway-1.6.1/gene2pathway/data/classificationModelSignalTrans_dme.rda |binary
gene2pathway-1.6.1/gene2pathway/data/classificationModelSignalTrans_hsa.rda |binary
gene2pathway-1.6.1/gene2pathway/data/classificationModel_dme.rda |binary
gene2pathway-1.6.1/gene2pathway/inst/CITATION |only
gene2pathway-1.6.1/gene2pathway/inst/doc/domain_signatures.pdf |only
gene2pathway-1.6.1/gene2pathway/inst/doc/gene2pathway.Rnw | 2
gene2pathway-1.6.1/gene2pathway/inst/doc/gene2pathway.pdf |binary
gene2pathway-1.6.1/gene2pathway/man/ORF2Entrez.Rd | 2
gene2pathway-1.6.1/gene2pathway/man/classificationModel.Rd | 2
gene2pathway-1.6.1/gene2pathway/man/classificationModelSignalTrans.Rd | 2
gene2pathway-1.6.1/gene2pathway/man/gene2pathway.Rd | 5
gene2pathway-1.6.1/gene2pathway/man/retrain.Rd | 4
25 files changed, 149 insertions(+), 101 deletions(-)
Title: Analysis of geostatistical data
Diff between geoR versions 1.6-28 dated 2010-07-05 and 1.6-29 dated 2010-08-12
Description: Geostatistical analysis including traditional,
likelihood-based and Bayesian methods.
Author: Paulo J. Ribeiro Jr
Maintainer: Paulo J. Ribeiro Jr
DESCRIPTION | 8 +++----
INDEX | 1
R/corcov.R | 2 +
R/eyefit.R | 3 --
R/geoRmisc.R | 56 +++++++++++++++++++++++++++++++++++++++++++++++++
R/geodata.R | 4 +--
R/variofit.R | 13 +++++++----
inst/doc/CHANGES | 26 +++++++++++++++++++++-
man/dup.coords.Rd | 7 +++++-
man/jitterDupCoords.Rd |only
10 files changed, 106 insertions(+), 14 deletions(-)
Title: MatchIt
Diff between MatchIt versions 2.4-11 dated 2009-06-26 and 2.4-14 dated 2010-08-12
Description: MatchIt preprocesses data by selecting approximate matched
samples of the treated and control groups with similar
covariate distributions, drawing on a large variety of matching
methods. After preprocessing data with MatchIt, whatever
standard parametric technique one might have used without
preprocessing can be used, but the results will be far less
model dependent.
Author: Daniel Ho
Maintainer: Kosuke Imai
DESCRIPTION | 8
R/load.first.R | 1
R/match.data.R | 8
R/matchit.R | 10
R/print.matchit.R | 10
R/summary.matchit.R | 18
inst/doc/index.shtml | 2
inst/doc/intro.tex | 23
inst/doc/matchit.aux | 26
inst/doc/matchit.bbl | 11
inst/doc/matchit.blg | 68
inst/doc/matchit.log | 286 +-
inst/doc/matchit.pdf | 4794 ++++++++++++++++++++++++------------------------
inst/doc/matchit.tex | 7
inst/doc/matchitref.tex | 4
man/matchit.Rd | 1
16 files changed, 2643 insertions(+), 2634 deletions(-)
Title: Selected ISO codes
Diff between ISOcodes versions 2010.05.29-1 dated 2010-05-30 and 2010.08.12-1 dated 2010-08-12
Description: ISO language, territory, currency, script and character
codes. Provides ISO 639 language codes, ISO 3166 territory
codes, ISO 4217 currency codes, ISO 15924 script codes, and the
ISO 8859 character codes as well as the UN M.49 area codes.
Author: Christian Buchta and Kurt Hornik
Maintainer: Kurt Hornik
ISOcodes-2010.05.29-1/ISOcodes/data/Unicode.rda |only
ISOcodes-2010.08.12-1/ISOcodes/DESCRIPTION | 6 +++---
ISOcodes-2010.08.12-1/ISOcodes/data/ISO_15924.rda |binary
ISOcodes-2010.08.12-1/ISOcodes/data/ISO_3166_2.rda |binary
ISOcodes-2010.08.12-1/ISOcodes/data/ISO_639_3.rda |binary
5 files changed, 3 insertions(+), 3 deletions(-)
Title: Sample Selection Models
Diff between sampleSelection versions 0.6-8 dated 2009-10-16 and 0.6-10 dated 2010-08-12
More information about sampleSelection at CRAN
Description: Estimation of Sample Selection Models
Author: Arne Henningsen
Maintainer: Arne Henningsen
sampleSelection-0.6-10/sampleSelection/DESCRIPTION | 11 -
sampleSelection-0.6-10/sampleSelection/INDEX | 6
sampleSelection-0.6-10/sampleSelection/NAMESPACE |only
sampleSelection-0.6-10/sampleSelection/NEWS |only
sampleSelection-0.6-10/sampleSelection/R/nObs.R |only
sampleSelection-0.6-10/sampleSelection/R/selection.R | 3
sampleSelection-0.6-10/sampleSelection/R/tobit2fit.R | 8 -
sampleSelection-0.6-10/sampleSelection/R/tobit5fit.R | 14 +-
sampleSelection-0.6-10/sampleSelection/inst/doc/selection.pdf |binary
sampleSelection-0.6-10/sampleSelection/inst/doc/selection.rnw | 11 -
sampleSelection-0.6-10/sampleSelection/inst/doc/tobit.Rnw.backup |only
sampleSelection-0.6-10/sampleSelection/inst/doc/tobit.aux |only
sampleSelection-0.6-10/sampleSelection/inst/doc/tobit.bbl |only
sampleSelection-0.6-10/sampleSelection/inst/doc/tobit.blg |only
sampleSelection-0.6-10/sampleSelection/inst/doc/tobit.log |only
sampleSelection-0.6-10/sampleSelection/inst/doc/tobit.out |only
sampleSelection-0.6-10/sampleSelection/inst/doc/tobit.pdf |only
sampleSelection-0.6-10/sampleSelection/inst/doc/tobit.tex |only
sampleSelection-0.6-10/sampleSelection/man/nObs.probit.Rd |only
sampleSelection-0.6-10/sampleSelection/man/selection.Rd | 4
sampleSelection-0.6-10/sampleSelection/tests/heckit.Rout.save | 44 ++----
sampleSelection-0.6-10/sampleSelection/tests/probit.Rout.save | 35 +----
sampleSelection-0.6-10/sampleSelection/tests/selection.R | 6
sampleSelection-0.6-10/sampleSelection/tests/selection.Rout.save | 63 +++++-----
sampleSelection-0.6-8/sampleSelection/R/coefTable.R |only
sampleSelection-0.6-8/sampleSelection/man/coefTable.Rd |only
26 files changed, 106 insertions(+), 99 deletions(-)
Permanent link
Title: Miscellanneous Tools and Utilities
Diff between miscTools versions 0.6-2 dated 2010-03-15 and 0.6-6 dated 2010-08-12
Description: Miscellanneous small tools and utilities
Author: Arne Henningsen, Ott Toomet
Maintainer: Arne Henningsen
DESCRIPTION | 10 +++++-----
INDEX | 6 ++++++
NAMESPACE | 9 +++++++++
NEWS | 13 +++++++++++++
R/ddnorm.R |only
R/nObs.R |only
R/nParam.R |only
R/sumKeepAttr.R |only
man/ddnorm.Rd |only
man/nObs.Rd |only
man/nParam.Rd |only
man/sumKeepAttr.Rd |only
tests/colMediansTest.Rout.save | 4 ++--
tests/ddnormTest.R |only
tests/ddnormTest.Rout.save |only
tests/insertColRow.Rout.save | 4 ++--
tests/lmMethods.R |only
tests/lmMethods.Rout.save |only
tests/sumKeepAttrTest.R |only
tests/sumKeepAttrTest.Rout.save |only
20 files changed, 37 insertions(+), 9 deletions(-)
Title: Analysis with the Constant Elasticity of Scale (CES) function
Diff between micEconCES versions 0.6-6 dated 2010-03-20 and 0.6-8 dated 2010-08-12
Description: Tools for economic analysis and economic modelling with a
Constant Elasticity of Scale (CES) function
Author: Arne Henningsen and Geraldine Henningsen
Maintainer: Arne Henningsen
DESCRIPTION | 8
NEWS | 12
inst/doc/CES.Rnw | 15
inst/doc/CES.Rnw.backup |only
inst/doc/CES.bbl |only
inst/doc/CES.blg |only
inst/doc/CES.pdf |13622 +++++++++++++++++++++-----------------------
man/cesEst.Rd | 45
tests/rhoZero.Rout.save | 23
tests/rhoZeroMult.Rout.save | 23
tests/simData.Rout.save | 23
tests/xMult.Rout.save | 23
12 files changed, 6874 insertions(+), 6920 deletions(-)
Title: Microeconomic Analysis and Modelling
Diff between micEcon versions 0.6-4 dated 2010-05-25 and 0.6-6 dated 2010-08-12
Description: Tools for microeconomic analysis and microeconomic
modelling
Author: Arne Henningsen
Maintainer: Arne Henningsen
DESCRIPTION | 8 -
NEWS | 7
R/translogCheckMono.R | 4
man/translogCheckMono.Rd | 15 ++
tests/cobbDouglasTest.Rout.save | 4
tests/indices.Rout.save | 4
tests/npregHomTest.Rout.save | 4
tests/quadFunc.Rout.save | 4
tests/translog.R | 43 +++++
tests/translog.Rout.save | 288 +++++++++++++++++++++++++++++++++++++++-
tests/translogCost.Rout.save | 4
11 files changed, 369 insertions(+), 16 deletions(-)
Title: Maximum Likelihood Estimation
Diff between maxLik versions 0.7-2 dated 2010-05-05 and 0.8-0 dated 2010-08-12
Description: Tools for Maximum Likelihood Estimation
Author: Ott Toomet
Maintainer: Arne Henningsen
maxLik-0.7-2/maxLik/man/maxBHHH.Rd |only
maxLik-0.8-0/maxLik/DESCRIPTION | 14
maxLik-0.8-0/maxLik/INDEX | 10
maxLik-0.8-0/maxLik/NAMESPACE | 15
maxLik-0.8-0/maxLik/NEWS | 54
maxLik-0.8-0/maxLik/R/activePar.R | 13
maxLik-0.8-0/maxLik/R/bread.maxLik.R |only
maxLik-0.8-0/maxLik/R/checkBhhhGrad.R |only
maxLik-0.8-0/maxLik/R/estfun.maxLik.R |only
maxLik-0.8-0/maxLik/R/logLikAttr.R |only
maxLik-0.8-0/maxLik/R/logLikFunc.R | 26
maxLik-0.8-0/maxLik/R/logLikGrad.R | 65
maxLik-0.8-0/maxLik/R/logLikHess.R | 43
maxLik-0.8-0/maxLik/R/maxBFGS.R | 12
maxLik-0.8-0/maxLik/R/maxBFGSR.R |only
maxLik-0.8-0/maxLik/R/maxBFGSRCompute.R |only
maxLik-0.8-0/maxLik/R/maxBHHH.R | 77
maxLik-0.8-0/maxLik/R/maxLik.R | 1
maxLik-0.8-0/maxLik/R/maxNM.R | 13
maxLik-0.8-0/maxLik/R/maxNR.R | 14
maxLik-0.8-0/maxLik/R/maxNRCompute.R | 192
maxLik-0.8-0/maxLik/R/maxOptim.R | 69
maxLik-0.8-0/maxLik/R/maxSANN.R | 16
maxLik-0.8-0/maxLik/R/nObs.R | 27
maxLik-0.8-0/maxLik/R/nParam.R | 11
maxLik-0.8-0/maxLik/R/numericGradient.R | 10
maxLik-0.8-0/maxLik/R/numericHessian.R | 18
maxLik-0.8-0/maxLik/R/observationGradient.R |only
maxLik-0.8-0/maxLik/R/print.maxLik.R | 2
maxLik-0.8-0/maxLik/R/sumGradients.R |only
maxLik-0.8-0/maxLik/R/summary.maxLik.R | 10
maxLik-0.8-0/maxLik/R/summary.maxim.R | 5
maxLik-0.8-0/maxLik/R/sumt.R | 81
maxLik-0.8-0/maxLik/R/vcov.maxLik.R | 2
maxLik-0.8-0/maxLik/man/bread.maxLik.Rd |only
maxLik-0.8-0/maxLik/man/estfun.maxLik.Rd |only
maxLik-0.8-0/maxLik/man/maxBFGS.Rd | 40
maxLik-0.8-0/maxLik/man/maxLik-internal.Rd | 1
maxLik-0.8-0/maxLik/man/maxLik.Rd | 5
maxLik-0.8-0/maxLik/man/maxNR.Rd | 207
maxLik-0.8-0/maxLik/man/nObs.Rd | 58
maxLik-0.8-0/maxLik/man/nParam.Rd | 32
maxLik-0.8-0/maxLik/man/numericGradient.Rd | 18
maxLik-0.8-0/maxLik/man/summary.maxLik.Rd | 4
maxLik-0.8-0/maxLik/man/sumt.Rd | 2
maxLik-0.8-0/maxLik/tests/constraints.R | 6
maxLik-0.8-0/maxLik/tests/constraints.Rout.save | 184
maxLik-0.8-0/maxLik/tests/examples.R | 105
maxLik-0.8-0/maxLik/tests/examples.Rout.save | 1589 ++++++-
maxLik-0.8-0/maxLik/tests/finalHessian.R |only
maxLik-0.8-0/maxLik/tests/finalHessian.Rout.save |only
maxLik-0.8-0/maxLik/tests/fitExpDist.R |only
maxLik-0.8-0/maxLik/tests/fitExpDist.Rout.save |only
maxLik-0.8-0/maxLik/tests/fitNormalDist.R | 490 +-
maxLik-0.8-0/maxLik/tests/fitNormalDist.Rout.save | 4859 ++++++++++++++++++++--
maxLik-0.8-0/maxLik/tests/methods.Rout.save | 5
56 files changed, 7282 insertions(+), 1123 deletions(-)
Title: Function GUI
Diff between fgui versions 1.0-0 dated 2009-04-17 and 1.0-1 dated 2010-08-12
Description: Rapidly create a GUI interface for a function you created
by automatically creating widgets for arguments of the
function. Automatically parses help routines for
context-sensative help to these arguments. The interface
essentially a wrapper to some tcltk routines to both simplify
and facilitate GUI creation. More advanced tcltk routines/GUI
objects can be incorporated into the interface for greater
customization for the more experienced.
Author: Thomas Hoffmann
Maintainer: Thomas Hoffmann
DESCRIPTION | 7 ++-
R/parseHelp.R | 95 ++++++++++++++++++++++++++++++++++++++---------------
man/guiGetValue.Rd | 2 -
3 files changed, 74 insertions(+), 30 deletions(-)
Title: delftfews R extensions
Diff between delftfews versions 0.3-27 dated 2010-08-11 and 0.3-30 dated 2010-08-12
Description: a collection of timeseries sets handling functions used
here at work (Nelen en Schuurmans), initially for the Lizard
Scripter.
Author: Mario Frasca
Maintainer: Mario Frasca
DESCRIPTION | 10 +++----
NAMESPACE | 5 +++
R/augment.R | 10 +++++--
R/rezoo.R | 5 ++-
R/select.R | 44 ++++++++++++++++++++++++---------
R/timeseries-io.R | 7 +++--
R/utils.R | 11 +++++++-
inst/RUnit/Makefile | 4 +--
inst/RUnit/runit.augment.R | 4 +--
inst/RUnit/runit.rezoo.R | 20 +++++++++++++--
inst/RUnit/runit.select.R | 52 +++++++++++++++++++++++++++++++++------
inst/RUnit/runit.timeseries-io.R | 20 +++++++--------
inst/RUnit/runit.utils.R | 18 +++++++++++--
man/rollingSum.Rd | 7 +++--
man/timeseries.Rd | 4 ++-
15 files changed, 164 insertions(+), 57 deletions(-)
Title: Constrained B-splines -- outdated 1999 version
Diff between cobs99 versions 0.9-9 dated 2009-12-06 and 0.9-10 dated 2010-08-12
Description: Qualitatively Constrained (Regression) Smoothing via
Linear Programming. OUTDATED version based on He & Ng (1999),
the modified "non-simplex" algorithm of Bartels and Conn
(1980).
Author: Pin T. Ng
Maintainer: Martin Maechler
ChangeLog | 5 ++++
DESCRIPTION | 8 +++----
man/drqssbc.Rd | 40 +++++++++++++++++++++++---------------
man/qbsks.Rd | 59 +++++++++++++++++++++++++--------------------------------
4 files changed, 59 insertions(+), 53 deletions(-)
Title: Tools for parsing and generating XML within R and S-Plus.
Diff between XML versions 3.1-0 dated 2010-05-08 and 3.1-1 dated 2010-08-12
Description: This package provides many approaches for both reading and
creating XML (and HTML) documents (including DTDs), both local
and accessible via HTTP or FTP. It also offers access to an
XPath "interpreter".
Author: Duncan Temple Lang (duncan@wald.ucdavis.edu)
Maintainer: Duncan Temple Lang
XML-3.1-0/XML/inst/exampleData/sample.html |only
XML-3.1-0/XML/inst/exampleData/xinclude/.svn/README.txt |only
XML-3.1-0/XML/inst/exampleData/xinclude/.svn/empty-file |only
XML-3.1-0/XML/inst/exampleData/xinclude/.svn/format |only
XML-3.1-0/XML/inst/exampleData/xinclude/.svn/prop-base/a.xml.svn-base |only
XML-3.1-0/XML/inst/exampleData/xinclude/.svn/prop-base/b.xml.svn-base |only
XML-3.1-0/XML/inst/exampleData/xinclude/.svn/prop-base/c.xml.svn-base |only
XML-3.1-0/XML/inst/exampleData/xinclude/.svn/prop-base/d.xml.svn-base |only
XML-3.1-0/XML/inst/exampleData/xinclude/.svn/prop-base/e.xml.svn-base |only
XML-3.1-0/XML/inst/exampleData/xinclude/.svn/prop-base/top.xml.svn-base |only
XML-3.1-0/XML/inst/exampleData/xinclude/.svn/props/a.xml.svn-work |only
XML-3.1-0/XML/inst/exampleData/xinclude/.svn/props/b.xml.svn-work |only
XML-3.1-0/XML/inst/exampleData/xinclude/.svn/props/c.xml.svn-work |only
XML-3.1-0/XML/inst/exampleData/xinclude/.svn/props/d.xml.svn-work |only
XML-3.1-0/XML/inst/exampleData/xinclude/.svn/props/e.xml.svn-work |only
XML-3.1-0/XML/inst/exampleData/xinclude/.svn/props/top.xml.svn-work |only
XML-3.1-0/XML/inst/exampleData/xinclude/.svn/tmp/wcprops |only
XML-3.1-0/XML/inst/exampleData/xinclude/.svn/wcprops |only
XML-3.1-0/XML/inst/exampleData/xinclude/a.xml~ |only
XML-3.1-0/XML/inst/exampleData/xinclude/simple.xml~ |only
XML-3.1-0/XML/inst/exampleData/xinclude/top.xml~ |only
XML-3.1-1/XML/Changes | 4
XML-3.1-1/XML/DESCRIPTION | 6
XML-3.1-1/XML/INSTALL | 2
XML-3.1-1/XML/R/readHTMLTable.R | 11
XML-3.1-1/XML/configure | 5247 +++++-----
XML-3.1-1/XML/inst/exampleData/xinclude/.svn/entries | 341
XML-3.1-1/XML/man/readHTMLTable.Rd | 1
XML-3.1-1/XML/src/RS_XML.h | 2
29 files changed, 3162 insertions(+), 2452 deletions(-)
Title: Power and Sample size based on two one-sided t-tests (TOST) for
bioequivalence studies
Diff between PowerTOST versions 0.6-2 dated 2010-07-24 and 0.7-1 dated 2010-08-12
Description: Contains functions to calculate power and sample size for
various study designs used for bioequivalence studies. See
function known.designs() for study designs covered. Moreover
the package contains functions for power and sample size based
on 'expected' power in case of uncertain (estimated)
variability. Added are functions for the power and sample size
for the ratio of two means with normally distributed data on
the original scale (based on Fieller's confidence ('fiducial')
interval).
Author: Detlew Labes
Maintainer: D. Labes
DESCRIPTION | 24 ++-
NEWS | 12 +
R/DesignHelpers.R | 54 ++------
R/Fieller.R |only
R/OwensQ.R | 54 +++++---
R/SampleSize.R | 285 ++++++++++------------------------------------
R/expSampleSize.R |only
R/exppower.R |only
R/power.R | 84 +++----------
man/CV2se.Rd | 16 +-
man/OwensQ.Rd | 11 +
man/PowerTOST-internal.Rd | 21 ++-
man/PowerTOST-package.Rd | 38 +++++-
man/exppower.TOST.Rd | 20 ++-
man/expsampleN.TOST.Rd | 34 +++--
man/known.designs.Rd | 21 +--
man/power.RatioF.Rd |only
man/power.TOST.Rd | 69 ++++++-----
man/sampleN.RatioF.Rd |only
man/sampleN.TOST.Rd | 74 +++++++----
20 files changed, 356 insertions(+), 461 deletions(-)
Title: Integrate Omics data project
Diff between mixOmics versions 2.7-1 dated 2010-05-28 and 2.8-1 dated 2010-08-12
Description: The package supplies two efficients methodologies:
regularized CCA and sparse PLS to unravel relationships between
two heterogeneous data sets of size (nxp) and (nxq) where the p
and q variables are measured on the same samples or individuals
n. These data may come from high throughput technologies, such
as omics data (e.g. transcriptomics, metabolomics or proteomics
data) that require an integrative or joint analysis. However,
mixOmics can also be applied to any other large data sets where
p + q >> n. rCCA is a regularized version of CCA to deal with
the large number of variables. sPLS allows variable selection
in a one step procedure and two frameworks are proposed:
regression and canonical analysis. Numerous graphical outputs
are provided to help interpreting the results.
Author: Sebastien Dejean, Ignacio Gonzalez, Kim-Anh Le Cao and Pierre
Monget
Maintainer: Kim-Anh Le Cao
mixOmics-2.7-1/mixOmics/R/plot3dIndiv.pca.R |only
mixOmics-2.7-1/mixOmics/R/plot3dIndiv.rcc.R |only
mixOmics-2.7-1/mixOmics/R/plot3dIndiv.spls.R |only
mixOmics-2.7-1/mixOmics/R/plot3dVar.pca.R |only
mixOmics-2.7-1/mixOmics/R/plot3dVar.rcc.R |only
mixOmics-2.7-1/mixOmics/R/plot3dVar.spls.R |only
mixOmics-2.7-1/mixOmics/man/rcc-internal.Rd |only
mixOmics-2.8-1/mixOmics/DESCRIPTION | 11 -
mixOmics-2.8-1/mixOmics/NAMESPACE | 18 +
mixOmics-2.8-1/mixOmics/NEWS | 136 ++++++++------
mixOmics-2.8-1/mixOmics/R/imgCor.R | 56 ++++-
mixOmics-2.8-1/mixOmics/R/map.R |only
mixOmics-2.8-1/mixOmics/R/plot3dIndiv.R |only
mixOmics-2.8-1/mixOmics/R/plot3dVar.R |only
mixOmics-2.8-1/mixOmics/R/plotIndiv.R | 2
mixOmics-2.8-1/mixOmics/R/plotVar.R | 209 +++++++++++++++++++++-
mixOmics-2.8-1/mixOmics/R/plsda.R | 55 ++---
mixOmics-2.8-1/mixOmics/R/predict.R | 175 ++++++++++++++++++
mixOmics-2.8-1/mixOmics/R/print.methods.R | 50 +++++
mixOmics-2.8-1/mixOmics/R/splsda.R | 127 ++++++-------
mixOmics-2.8-1/mixOmics/R/unmap.R |only
mixOmics-2.8-1/mixOmics/data/srbct.rda |only
mixOmics-2.8-1/mixOmics/man/imgCor.Rd | 19 +-
mixOmics-2.8-1/mixOmics/man/internal-functions.Rd |only
mixOmics-2.8-1/mixOmics/man/map.Rd |only
mixOmics-2.8-1/mixOmics/man/plot3dIndiv.Rd | 14 +
mixOmics-2.8-1/mixOmics/man/plot3dVar.Rd | 36 +++
mixOmics-2.8-1/mixOmics/man/plotIndiv.Rd | 3
mixOmics-2.8-1/mixOmics/man/plotVar.Rd | 27 ++
mixOmics-2.8-1/mixOmics/man/plsda.Rd | 21 +-
mixOmics-2.8-1/mixOmics/man/predict.Rd | 80 +++++---
mixOmics-2.8-1/mixOmics/man/splsda.Rd | 30 ++-
mixOmics-2.8-1/mixOmics/man/srbct.Rd |only
mixOmics-2.8-1/mixOmics/man/unmap.Rd |only
34 files changed, 826 insertions(+), 243 deletions(-)
Title: Categorical Bayesian Network Inference
Diff between catnet versions 1.08.1 dated 2010-08-10 and 1.08.2 dated 2010-08-12
Description: A package that handles discrete Bayesian network models
and provides inference using the frequentist approach
Author: Nikolay Balov, Peter Salzman
Maintainer: Nikolay Balov
DESCRIPTION | 8 ++++----
R/catnet.search.R | 25 +++++++++++++------------
inst/doc/catnet.pdf |binary
src/catnet_search2.h | 1 +
src/pthread.cpp | 4 ++--
src/rcatnet_hist.cpp | 2 +-
src/thread.h | 5 +++--
src/utils.h | 2 ++
8 files changed, 26 insertions(+), 21 deletions(-)
Title: Sparse Linear Algebra
Diff between SparseM versions 0.85 dated 2010-02-12 and 0.86 dated 2010-08-12
Description: Basic linear algebra for sparse matrices
Author: Roger Koenker
Maintainer: Roger Koenker
DESCRIPTION | 8 +++----
LICENSE | 57 ++++++++++++++++++++++++++++++++++++++++++---------
inst/doc/Rplots.pdf | 37 ++++++++++++++++++++-------------
inst/doc/SparseM.pdf |binary
4 files changed, 75 insertions(+), 27 deletions(-)
Title: Using GUIs to help teach statistics to non-statistics students
Diff between ResearchMethods versions 1.01 dated 2008-12-14 and 1.2 dated 2010-08-12
More information about ResearchMethods at CRAN
Description:
Author: Mohamed Abdolell and Sam Stewart
Maintainer: Sam Stewart
DESCRIPTION | 10 ++++++----
man/myHist.Rd | 16 ++++++++--------
man/sampleAssign.Rd | 2 +-
3 files changed, 15 insertions(+), 13 deletions(-)
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