Title: Spatial dependence: weighting schemes, statistics and models
Diff between spdep versions 0.5-17 dated 2010-07-31 and 0.5-19 dated 2010-08-16
Description: A collection of functions to create spatial weights matrix
objects from polygon contiguities, from point patterns by
distance and tesselations, for summarising these objects, and
for permitting their use in spatial data analysis, including
regional aggregation by minimum spanning tree; a collection of
tests for spatial autocorrelation, including global Moran's I,
APLE, Geary's C, Hubert/Mantel general cross product statistic,
Empirical Bayes estimates and Assunção/Reis Index, Getis/Ord G
and multicoloured join count statistics, local Moran's I and
Getis/Ord G, saddlepoint approximations and exact tests for
global and local Moran's I; and functions for estimating
spatial simultaneous autoregressive (SAR) lag and error models,
impact measures for lag models, weighted and unweighted SAR and
CAR spatial regression models, semi-parametric and Moran
eigenvector spatial filtering, GM SAR error models, and
generalized spatial two stage least squares models.
Author: Roger Bivand
Maintainer: Roger Bivand
ChangeLog | 26 ++++++++++++
DESCRIPTION | 8 +--
NAMESPACE | 2
R/jacobian.R | 117 +++++++++++++++++++++++++++++++++++++++++++++++++-----
R/nb2listw.R | 8 +++
inst/ChangeLog | 26 ++++++++++++
inst/doc/CO69.pdf |binary
inst/doc/sids.pdf |binary
man/do_ldet.Rd | 34 +++++++++++++++
9 files changed, 205 insertions(+), 16 deletions(-)
Title: R Workspace Management
Diff between rwm versions 1.51 dated 2010-07-28 and 1.52 dated 2010-08-16
Description: R workspace management functions. The principal functions
are loadws, attachws and savews. This packages provides a
convenient method of accessing with R workspaces that is OS
independent. In simple situations, it may replace the need for
R packages.
Author: A.I. McLeod
Maintainer: A.I. McLeod
DESCRIPTION | 9 +++++----
inst/doc/UsingRwm.pdf | 6 +++---
man/rwm-package.Rd | 4 ++--
3 files changed, 10 insertions(+), 9 deletions(-)
Title: Robust Estimation for Compositional Data.
Diff between robCompositions versions 1.4.2 dated 2010-07-05 and 1.4.3 dated 2010-08-16
More information about robCompositions at CRAN
Description: The package includes methods for imputation of
compositional data including robust methods, (robust) outlier
detection for compositional data, (robust) principal component
analysis for compositional data, (robust) factor analysis for
compositional data, (robust) discriminant analysis for
compositional data (Fisher rule) and (robust) Anderson-Darling
normality tests for compositional data as well as popular
log-ratio transformations (alr, clr, ilr, and their inverse
transformations).
Author: Matthias Templ, Karel Hron, Peter Filzmoser
Maintainer: Matthias Templ
DESCRIPTION | 8 ++++----
NAMESPACE | 2 +-
R/daFisher.R | 4 +++-
R/plot.imp.R | 2 +-
inst/doc/imputation.pdf |binary
5 files changed, 9 insertions(+), 7 deletions(-)
Permanent link
Title: Keep track of dates in terms of months
Diff between mondate versions 0.9.6 dated 2010-07-24 and 0.9.08.15 dated 2010-08-16
Description: Keep track of dates in month units. Perform date
arithmetic in "months" (default), "years", and "days". Enable
dates to have "shape" (non NULL dim). Allow "infinite" dates.
Author: Dan Murphy
Maintainer: Dan Murphy
mondate-0.9.08.15/mondate/DESCRIPTION | 11
mondate-0.9.08.15/mondate/R/mondate.r | 260 +++++-----
mondate-0.9.08.15/mondate/man/Coersion.from.mondate-methods.rd | 12
mondate-0.9.08.15/mondate/man/displayFormat-methods.Rd | 2
mondate-0.9.08.15/mondate/man/format.mondate.rd | 1
mondate-0.9.08.15/mondate/man/misc-methods.Rd | 18
mondate-0.9.08.15/mondate/man/mondate-class.Rd | 7
mondate-0.9.08.15/mondate/man/mondate-methods.Rd | 17
mondate-0.9.08.15/mondate/man/year-methods.Rd | 40 +
mondate-0.9.6/mondate/mondate.test.as.numeric.r |only
10 files changed, 232 insertions(+), 136 deletions(-)
Title: Gillespie's Stochastic Simulation Algorithm (SSA)
Diff between GillespieSSA versions 0.5-3 dated 2008-02-21 and 0.5-4 dated 2010-08-16
Description: GillespieSSA provides a simple to use, intuitive, and
extensible interface to several stochastic simulation
algorithms for generating simulated trajectories of finite
population continuous-time model. Currently it implements
Gillespie's exact stochastic simulation algorithm (Direct
method) and several approximate methods (Explicit tau-leap,
Binomial tau-leap, and Optimized tau-leap). The package also
contains a library of template models that can be run as demo
models and can easily be customized and extended. Currently the
following models are included, decaying-dimerization reaction
set, linear chain system, logistic growth model, Lotka
predator-prey model, Rosenzweig-MacArthur predator-prey model,
Kermack-McKendrick SIR model, and a metapopulation SIRS model.
Author: Mario Pineda-Krch
Maintainer: Mario Pineda-Krch
DESCRIPTION | 36 +++++++++++++++++++++++++-----------
R/ssa.R | 17 ++++++++++++++++-
R/ssa.btl.R | 17 ++++++++++++++++-
R/ssa.btl.diag.R | 17 ++++++++++++++++-
R/ssa.check.args.R | 17 ++++++++++++++++-
R/ssa.check.method.R | 17 ++++++++++++++++-
R/ssa.d.R | 17 ++++++++++++++++-
R/ssa.d.diag.R | 17 ++++++++++++++++-
R/ssa.etl.R | 17 ++++++++++++++++-
R/ssa.etl.diag.R | 17 ++++++++++++++++-
R/ssa.nutiling.R | 17 ++++++++++++++++-
R/ssa.otl.R | 17 ++++++++++++++++-
R/ssa.otl.diag.R | 17 ++++++++++++++++-
R/ssa.plot.R | 17 ++++++++++++++++-
R/ssa.run.R | 18 +++++++++++++++++-
R/ssa.terminate.R | 19 ++++++++++++++++++-
demo/GillespieSSA.R | 2 +-
demo/epiChain.R | 4 ++--
demo/rma.R | 2 +-
inst |only
man/GillespieSSA-package.Rd | 25 +++++++++++--------------
man/ssa.Rd | 5 ++---
man/ssa.btl.Rd | 1 -
man/ssa.btl.diag.Rd | 1 -
man/ssa.check.args.Rd | 3 +--
man/ssa.check.method.Rd | 1 -
man/ssa.d.Rd | 1 -
man/ssa.d.diag.Rd | 1 -
man/ssa.etl.Rd | 3 +--
man/ssa.etl.diag.Rd | 3 +--
man/ssa.nutiling.Rd | 3 +--
man/ssa.otl.Rd | 1 -
man/ssa.otl.diag.Rd | 1 -
man/ssa.plot.Rd | 7 +++----
man/ssa.run.Rd | 5 ++---
man/ssa.terminate.Rd | 3 +--
36 files changed, 295 insertions(+), 71 deletions(-)
Title: GEV conditonal density estimation network
Diff between GEVcdn versions 1.0.1 dated 2010-07-30 and 1.0.2 dated 2010-08-16
Description: A flexible nonlinear modelling framework for nonstationary
generalized extreme value analysis in hydroclimatology
Author: Alex J. Cannon
Maintainer: Alex J. Cannon
DESCRIPTION | 8 ++++----
man/GEVcdn-package.Rd | 10 ----------
man/gevcdn.bag.Rd | 4 ++--
man/gevcdn.bootstrap.Rd | 6 +++---
man/gevcdn.fit.Rd | 4 +---
5 files changed, 10 insertions(+), 22 deletions(-)
Title: Subset AR Model Fitting
Diff between FitAR versions 1.79 dated 2009-10-13 and 1.80 dated 2010-08-16
Description: Comprehensive model building function for identification,
estimation and diagnostic checking for AR and subset AR models.
Two types of subset AR models are supported. One family of
subset AR models, denoted by ARp, is formed by taking subet of
the original AR coefficients and in the other, denoted by ARz,
subsets of the partial autocorrelations are used. The main
advantage of the ARz model is its applicability to very large
order models.
Author: A.I. McLeod and Ying Zhang
Maintainer: A.I. McLeod
FitAR-1.79/FitAR/inst/doc/Updates.txt |only
FitAR-1.80/FitAR/DESCRIPTION | 15 ++++++++++-----
FitAR-1.80/FitAR/NAMESPACE |only
FitAR-1.80/FitAR/inst/doc/JSSv28i02.pdf |only
FitAR-1.80/FitAR/inst/doc/NEWS |only
FitAR-1.80/FitAR/inst/doc/index.html |only
FitAR-1.80/FitAR/inst/doc/index_files |only
FitAR-1.80/FitAR/inst/doc/v28i02-figures.R |only
FitAR-1.80/FitAR/inst/doc/v28i02-tables.R |only
FitAR-1.80/FitAR/man/Boot.FitAR.Rd | 4 +++-
FitAR-1.80/FitAR/man/Boot.Rd | 1 -
FitAR-1.80/FitAR/man/Boot.ts.Rd | 1 -
FitAR-1.80/FitAR/man/BoxCox.Arima.Rd | 3 ++-
FitAR-1.80/FitAR/man/BoxCox.FitAR.Rd | 3 ++-
FitAR-1.80/FitAR/man/BoxCox.Rd | 2 ++
FitAR-1.80/FitAR/man/BoxCox.numeric.Rd | 4 ++--
FitAR-1.80/FitAR/man/BoxCox.ts.Rd | 3 ++-
FitAR-1.80/FitAR/man/Commodities.Rd | 4 +++-
FitAR-1.80/FitAR/man/FXRates.Rd | 1 -
FitAR-1.80/FitAR/man/FastLoglikelihoodAR.Rd | 1 -
FitAR-1.80/FitAR/man/FitAR-package.Rd | 9 +++++----
FitAR-1.80/FitAR/man/FitAR.Rd | 2 ++
FitAR-1.80/FitAR/man/FitARp.Rd | 2 ++
FitAR-1.80/FitAR/man/FitARz.Rd | 2 ++
FitAR-1.80/FitAR/man/GetARMeanMLE.Rd | 3 +++
FitAR-1.80/FitAR/man/GetFitAR.Rd | 2 +-
FitAR-1.80/FitAR/man/GetFitARpLS.Rd | 1 -
FitAR-1.80/FitAR/man/LBQPlot.Rd | 1 -
FitAR-1.80/FitAR/man/LoglikelihoodAR.Rd | 1 -
FitAR-1.80/FitAR/man/Ninemile.Rd | 1 -
FitAR-1.80/FitAR/man/PacfDL.Rd | 1 -
FitAR-1.80/FitAR/man/SelectModel.Rd | 3 ++-
FitAR-1.80/FitAR/man/UnitRootTest.Rd | 2 ++
FitAR-1.80/FitAR/man/coef.FitAR.Rd | 1 -
FitAR-1.80/FitAR/man/fitted.FitAR.Rd | 1 -
FitAR-1.80/FitAR/man/plot.FitAR.Rd | 1 -
FitAR-1.80/FitAR/man/plot.Selectmodel.Rd | 4 +++-
FitAR-1.80/FitAR/man/predict.FitAR.Rd | 2 ++
FitAR-1.80/FitAR/man/residuals.FitAR.Rd | 1 -
FitAR-1.80/FitAR/man/sdfplot.Arima.Rd | 1 -
FitAR-1.80/FitAR/man/sdfplot.FitAR.Rd | 1 -
FitAR-1.80/FitAR/man/sdfplot.Rd | 1 -
42 files changed, 50 insertions(+), 35 deletions(-)
Title: Model selection and multimodel inference based on (Q)AIC(c)
Diff between AICcmodavg versions 1.07 dated 2010-06-01 and 1.08 dated 2010-08-16
Description: This package includes functions to create model selection
tables based on Akaike's information criterion (AIC) and the
second-order AIC (AICc), as well as their quasi-likelihood
counterparts (QAIC, QAICc). Tables are printed with delta AIC
and Akaike weights. The package also includes functions to
conduct model averaging (multimodel inference) for a given
parameter of interest or predicted values. Other handy
functions enable the computation of relative variable
importance, evidence ratios, and confidence sets for the best
model. The present version works with linear models ('lm'
class), generalized linear models ('glm' class), linear models
fit by generalized least squares ('gls' class), linear mixed
models ('lme' class), generalized linear mixed models ('mer'
class), multinomial and ordinal logistic regressions
('multinom' and 'polr' classes).
Author: Marc J. Mazerolle
Maintainer: Marc J. Mazerolle
AICcmodavg-1.07/AICcmodavg/013645.html |only
AICcmodavg-1.08/AICcmodavg/DESCRIPTION | 10 +++++-----
AICcmodavg-1.08/AICcmodavg/inst/NEWS | 4 ++++
AICcmodavg-1.08/AICcmodavg/man/AICcmodavg-package.Rd | 4 ++--
4 files changed, 11 insertions(+), 7 deletions(-)
Title: An interface for creating GUIs modeled in part after traits UI
module for python.
Diff between traitr versions 0.9 dated 2010-07-24 and 0.10 dated 2010-08-16
Description: An interface for creating GUIs modeled in part after the
traits UI module for python. The basic design takes advantage
of the model-view-controller design pattern. The interface
makes basic dialogs quite easy to produce.
Author: John Verzani
Maintainer: John Verzani
DESCRIPTION | 9 ++++++---
NEWS | 3 +++
R/container.R | 38 +++++++++++++++++++-------------------
R/dialog.R | 11 ++++++-----
R/editor.R | 4 ++--
R/itemgroup.R | 18 ++++++++++++++++++
R/items.R | 3 +--
TODO.txt | 1 +
inst/doc/traitr.pdf |binary
man/aDialog.Rd | 3 ++-
man/anItemGroup.Rd | 18 ++++++++++++++++++
man/dialogMaker.Rd | 1 -
man/variableSelectorItem.Rd | 3 +--
13 files changed, 77 insertions(+), 35 deletions(-)
Title: Inference in Generalized Linear Models
Diff between glmperm versions 1.0-2 dated 2010-04-02 and 1.0-3 dated 2010-08-16
Description: A permutation test is used for inference in generalized
linear models (glm). The procedure is useful when parameter
estimates in ordinary glm fail to converge or are unreliable
due to small sample size.
Author: Wiebke Werft and Douglas M. Potter
Maintainer: Wiebke Werft
DESCRIPTION | 9 +++++----
1 file changed, 5 insertions(+), 4 deletions(-)
Title: GUI for clustering data with spatial information
Diff between clustTool versions 1.6.4 dated 2009-09-29 and 1.6.5 dated 2010-08-16
Description: This package can be used for clustering data with spatial
information. Try function GUIspatClust() to run the clustTool
GUI.
Author: Matthias Templ
Maintainer: Matthias Templ
DESCRIPTION | 12 ++--
R/clust.R | 157 +++++++++++++++++++++++++++++++++++++++++++++++++++++
man/print.clust.Rd | 2
3 files changed, 164 insertions(+), 7 deletions(-)
Title: Visualization and Imputation of Missing Values
Diff between VIM versions 1.4 dated 2010-01-18 and 1.4.1 dated 2010-08-16
Description: This package introduces new tools for the visualization of
missing values in R, which can be used for exploring the data
and the structure of the missing values. Depending on this
structure, they may help to identify the mechanism generating
the missings. A graphical user interface allows an easy
handling of the implemented plot methods.
Author: Matthias Templ, Andreas Alfons, Alexander Kowarik
Maintainer: Matthias Templ
VIM-1.4.1/VIM/.project |only
VIM-1.4.1/VIM/DESCRIPTION | 8 ++++----
VIM-1.4.1/VIM/inst/doc/VIM-EU-SILC.Rnw | 29 +++++++++++++++--------------
VIM-1.4.1/VIM/inst/doc/VIM-EU-SILC.dvi |only
VIM-1.4.1/VIM/inst/doc/VIM-EU-SILC.pdf |binary
VIM-1.4.1/VIM/inst/doc/fig-aggr.eps |only
VIM-1.4.1/VIM/inst/doc/fig-margin.eps |only
VIM-1.4.1/VIM/inst/doc/fig-matrix.eps |only
VIM-1.4.1/VIM/inst/doc/fig-parallel.eps |only
VIM-1.4.1/VIM/inst/doc/fig-spine.eps |only
VIM-1.4.1/VIM/inst/doc/screenshot1.eps |only
VIM-1.4.1/VIM/inst/doc/screenshot1.pdf |only
VIM-1.4.1/VIM/inst/doc/screenshot2.eps |only
VIM-1.4.1/VIM/inst/doc/screenshot2.pdf |only
VIM-1.4.1/VIM/inst/doc/screenshot3.eps |only
VIM-1.4.1/VIM/inst/doc/screenshot3.pdf |only
VIM-1.4.1/VIM/inst/doc/screenshot4.eps |only
VIM-1.4.1/VIM/inst/doc/screenshot4.pdf |only
VIM-1.4.1/VIM/inst/doc/screenshot5.eps |only
VIM-1.4.1/VIM/inst/doc/screenshot5.pdf |only
VIM-1.4.1/VIM/inst/doc/screenshot6.eps |only
VIM-1.4.1/VIM/inst/doc/screenshot6.pdf |only
VIM-1.4.1/VIM/inst/doc/screenshot7.eps |only
VIM-1.4.1/VIM/inst/doc/screenshot7.pdf |only
VIM-1.4.1/VIM/inst/doc/screenshot8.eps |only
VIM-1.4.1/VIM/inst/doc/screenshot8.pdf |only
VIM-1.4.1/VIM/man/matrixplot.Rd | 4 ++--
VIM-1.4/VIM/inst/doc/screenshot1.png |only
VIM-1.4/VIM/inst/doc/screenshot2.png |only
VIM-1.4/VIM/inst/doc/screenshot3.png |only
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35 files changed, 21 insertions(+), 20 deletions(-)
Title: Seismic Time Series Analysis Tools
Diff between RSEIS versions 2.4-1 dated 2010-07-24 and 2.4-4 dated 2010-08-16
Description: Multiple interactive codes to analyze seismic data, via,
spectrum analysis, wavelet transforms, particle motion,
hodograms.
Author: Jonathan M. Lees
Maintainer: Jonathan M. Lees
RSEIS-2.4-1/RSEIS/R/Gcols.R |only
RSEIS-2.4-1/RSEIS/R/HOZscale.R |only
RSEIS-2.4-1/RSEIS/R/RESCALE.R |only
RSEIS-2.4-1/RSEIS/R/circle.R |only
RSEIS-2.4-1/RSEIS/R/getmem.R |only
RSEIS-2.4-1/RSEIS/R/ilocator.R |only
RSEIS-2.4-1/RSEIS/R/itoxyz.R |only
RSEIS-2.4-1/RSEIS/R/jpostscript.R |only
RSEIS-2.4-1/RSEIS/R/local.file.R |only
RSEIS-2.4-1/RSEIS/R/meshgrid.R |only
RSEIS-2.4-1/RSEIS/R/shade.col.R |only
RSEIS-2.4-1/RSEIS/R/textrect.R |only
RSEIS-2.4-1/RSEIS/R/ymarginfo.R |only
RSEIS-2.4-1/RSEIS/man/Gcols.Rd |only
RSEIS-2.4-1/RSEIS/man/HOZscale.Rd |only
RSEIS-2.4-1/RSEIS/man/RESCALE.Rd |only
RSEIS-2.4-1/RSEIS/man/circle.Rd |only
RSEIS-2.4-1/RSEIS/man/getmem.Rd |only
RSEIS-2.4-1/RSEIS/man/ilocator.Rd |only
RSEIS-2.4-1/RSEIS/man/itoxyz.Rd |only
RSEIS-2.4-1/RSEIS/man/jpostscript.Rd |only
RSEIS-2.4-1/RSEIS/man/local.file.Rd |only
RSEIS-2.4-1/RSEIS/man/meshgrid.Rd |only
RSEIS-2.4-1/RSEIS/man/shade.col.Rd |only
RSEIS-2.4-1/RSEIS/man/textrect.Rd |only
RSEIS-2.4-1/RSEIS/man/ymarginfo.Rd |only
RSEIS-2.4-4/RSEIS/DESCRIPTION | 10 -
RSEIS-2.4-4/RSEIS/R/PICK.DOC.R | 169 +++++++++++++++++++++++----------
RSEIS-2.4-4/RSEIS/R/PICK.GEN.R | 74 +++++++++-----
RSEIS-2.4-4/RSEIS/R/PLOT.ALLPX.R | 10 -
RSEIS-2.4-4/RSEIS/inst/doc/hodo.pdf |binary
RSEIS-2.4-4/RSEIS/inst/doc/rseis.pdf |binary
RSEIS-2.4-4/RSEIS/man/PICK.GEN.Rd | 6 -
RSEIS-2.4-4/RSEIS/man/RSEIS-package.Rd | 4
34 files changed, 184 insertions(+), 89 deletions(-)
Title: Graphical User Interface (GUI) for interactive R analysis
sessions
Diff between RPMG versions 1.0-2 dated 2008-06-26 and 2.0-0 dated 2010-08-16
Description: Poor Man's Gui: create interactive R analysis sessions
Author: Jonathan M. Lees
Maintainer: Jonathan M. Lees
DESCRIPTION | 11 +++++++----
R/Gcols.R |only
R/HOZscale.R |only
R/RESCALE.R |only
R/SHOWPAL.R |only
R/butdoc.R |only
R/chooser.R |only
R/circle.R |only
R/fmod.R |only
R/getmem.R |only
R/ilocator.R |only
R/itoxyz.R |only
R/jpostscript.R |only
R/label.it.R |only
R/local.file.R |only
R/meshgrid.R |only
R/pastel.colors.R |only
R/shade.col.R |only
R/textrect.R |only
R/ymarginfo.R |only
man/Gcols.Rd |only
man/HOZscale.Rd |only
man/RESCALE.Rd |only
man/RPMG-package.Rd | 4 ++--
man/SHOWPAL.Rd |only
man/XSECDEM.Rd | 2 +-
man/butdoc.Rd |only
man/chooser.Rd |only
man/circle.Rd |only
man/fmod.Rd |only
man/getmem.Rd |only
man/ilocator.Rd |only
man/itoxyz.Rd |only
man/jpostscript.Rd |only
man/label.it.Rd |only
man/local.file.Rd |only
man/meshgrid.Rd |only
man/pastel.colors.Rd |only
man/shade.col.Rd |only
man/textrect.Rd |only
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41 files changed, 10 insertions(+), 7 deletions(-)
Title: Topographic and Geologic Mapping
Diff between GEOmap versions 1.5-8 dated 2010-07-24 and 1.5-9 dated 2010-08-16
Description: Set of routines for making Map Projections (forward and
inverse), Topographic Maps, Perspective plots, Geological Maps,
geological map symbols, geological databases, interactive
plotting and selection of focus regions.
Author: Jonathan M. Lees
Maintainer: Jonathan M. Lees
GEOmap-1.5-8/GEOmap/R/Gcols.R |only
GEOmap-1.5-8/GEOmap/R/HOZscale.R |only
GEOmap-1.5-8/GEOmap/R/RESCALE.R |only
GEOmap-1.5-8/GEOmap/R/circle.R |only
GEOmap-1.5-8/GEOmap/R/fmod.R |only
GEOmap-1.5-8/GEOmap/R/getmem.R |only
GEOmap-1.5-8/GEOmap/R/ilocator.R |only
GEOmap-1.5-8/GEOmap/R/itoxyz.R |only
GEOmap-1.5-8/GEOmap/R/jpostscript.R |only
GEOmap-1.5-8/GEOmap/R/local.file.R |only
GEOmap-1.5-8/GEOmap/R/meshgrid.R |only
GEOmap-1.5-8/GEOmap/R/shade.col.R |only
GEOmap-1.5-8/GEOmap/R/textrect.R |only
GEOmap-1.5-8/GEOmap/man/Gcols.Rd |only
GEOmap-1.5-8/GEOmap/man/HOZscale.Rd |only
GEOmap-1.5-8/GEOmap/man/RESCALE.Rd |only
GEOmap-1.5-8/GEOmap/man/circle.Rd |only
GEOmap-1.5-8/GEOmap/man/fmod.Rd |only
GEOmap-1.5-8/GEOmap/man/getmem.Rd |only
GEOmap-1.5-8/GEOmap/man/ilocator.Rd |only
GEOmap-1.5-8/GEOmap/man/itoxyz.Rd |only
GEOmap-1.5-8/GEOmap/man/jpostscript.Rd |only
GEOmap-1.5-8/GEOmap/man/local.file.Rd |only
GEOmap-1.5-8/GEOmap/man/meshgrid.Rd |only
GEOmap-1.5-8/GEOmap/man/shade.col.Rd |only
GEOmap-1.5-8/GEOmap/man/textrect.Rd |only
GEOmap-1.5-9/GEOmap/DESCRIPTION | 7 ++++---
GEOmap-1.5-9/GEOmap/inst/doc/GEOmap.pdf |binary
GEOmap-1.5-9/GEOmap/man/GEOmap-package.Rd | 2 +-
29 files changed, 5 insertions(+), 4 deletions(-)
Title: Modelling and analysis of real-time PCR data
Diff between qpcR versions 1.2-9 dated 2010-07-26 and 1.3-0 dated 2010-08-16
Description: Model fitting, optimal model selection and calculation of
various features that are essential in the analysis of
quantitative real-time polymerase chain reaction (qPCR).
Author: Andrej-Nikolai Spiess
Maintainer: Andrej-Nikolai Spiess
DESCRIPTION | 8 ++--
NAMESPACE | 4 +-
NEWS | 14 ++++++++
R/KOD.r | 93 ++++++++++++++++++++++--------------------------------
R/SOD.r |only
R/expcomp.R | 7 +---
R/expfit.R | 6 +--
R/is.outlier.r | 23 ++++---------
R/maxRatio.r | 2 -
R/pcrbatch.r | 19 +----------
R/plot.pcrfit.r | 24 ++++++-------
R/ratiobatch.r | 1
R/rep2mod.r |only
R/replist.r | 8 ++--
man/KOD.rd | 10 ++---
man/SOD.rd |only
man/is.outlier.rd | 24 +++++++++----
man/rep2mod.rd |only
man/replist.rd | 7 ++--
19 files changed, 117 insertions(+), 133 deletions(-)
Title: Inferences for ratios of coefficients in the general linear
model
Diff between mratios versions 1.3.11 dated 2009-10-14 and 1.3.13 dated 2010-08-16
Description: With this package, it is possible to perform
(simultaneous) inferences for ratios of linear combinations of
coefficients in the general linear model. In particular, tests
and confidence interval estimations for ratios of treatment
means in the normal one-way layout and confidence interval
estimations like in (multiple) slope ratio and parallel line
assays can be carried out. Moreover, it is possible to
calculate the sample sizes required in comparisons with a
control based on relative margins. For the simple two-sample
problem, functions for a t-test for ratio-formatted hypotheses
and the corresponding Fieller-type confidence interval are
provided assuming homogeneous or heterogeneous group variances.
Author: Gemechis Dilba Djira, Mario Hasler, Daniel Gerhard, Frank
Schaarschmidt
Maintainer: Frank Schaarschmidt
DESCRIPTION | 12 ++++++------
man/print.sci.ratio.Rd | 6 ++++++
man/print.simtest.ratio.Rd | 6 ++++++
man/sci.ratio.gen.Rd | 16 ++++------------
man/summary.sci.ratio.Rd | 9 ++++++++-
man/summary.simtest.ratio.Rd | 6 ++++++
man/t.test.ratio.Rd | 4 ++--
7 files changed, 38 insertions(+), 21 deletions(-)
Title: Laeken indicators for measuring social cohesion
Diff between laeken versions 0.1.2 dated 2010-08-09 and 0.1.3 dated 2010-08-16
Description: Calculate Laeken indicators for measuring social cohesion
and apply Pareto tail modeling to empirical income
distributions (including graphical tools).
Author: Andreas Alfons, Josef Holzer and Matthias Templ
Maintainer: Andreas Alfons
DESCRIPTION | 8 ++++----
NEWS | 5 +++++
man/calibWeights.Rd | 10 +++++-----
man/laeken-package.Rd | 4 ++--
4 files changed, 16 insertions(+), 11 deletions(-)
Title: GAMLSS Data.
Diff between gamlss.data versions 4.0-0 dated 2010-05-25 and 4.0-1 dated 2010-08-16
Description: Data for GAMLSS models.
Author: Mikis Stasinopoulos
Maintainer: Mikis Stasinopoulos
DESCRIPTION | 8 ++++----
man/acidity.Rd |only
2 files changed, 4 insertions(+), 4 deletions(-)
Title: GAMLSS Additive.
Diff between gamlss.add versions 4.0-0 dated 2010-05-22 and 4.0-1 dated 2010-08-16
Description: Extra additive terms for GAMLSS models.
Author: Mikis Stasinopoulos
Maintainer: Mikis Stasinopoulos
DESCRIPTION | 10 +++++-----
1 file changed, 5 insertions(+), 5 deletions(-)
Title: Generalized Additive Models for Location Scale and Shape.
Diff between gamlss versions 4.0-0 dated 2010-05-25 and 4.0-3 dated 2010-08-16
Description: The library for fitting GAMLSS models.
Author: Mikis Stasinopoulos
Maintainer: Mikis Stasinopoulos
gamlss-4.0-0/gamlss/R/stepGAIC.R |only
gamlss-4.0-3/gamlss/DESCRIPTION | 8 ++---
gamlss-4.0-3/gamlss/NAMESPACE | 5 +--
gamlss-4.0-3/gamlss/R/centilesFan.R |only
gamlss-4.0-3/gamlss/R/centilesPLOT.R | 20 ++++++++++--
gamlss-4.0-3/gamlss/R/stepGAIC-19-06-10..R |only
gamlss-4.0-3/gamlss/R/stepGAICAll-B.R |only
gamlss-4.0-3/gamlss/R/stepGAICall-18-03-10.R | 2 -
gamlss-4.0-3/gamlss/R/update.R | 31 +++++++++++++++++--
gamlss-4.0-3/gamlss/inst/doc/NEWS.txt | 22 +++++++++++++
gamlss-4.0-3/gamlss/man/centiles.Rd | 21 +++++++++++--
gamlss-4.0-3/gamlss/man/stepGAIC.Rd | 43 +++++++++++++++++++--------
gamlss-4.0-3/gamlss/man/update.gamlss.Rd | 8 +++--
13 files changed, 129 insertions(+), 31 deletions(-)
Title: Teaching GUI - Core functionality
Diff between TGUICore versions 0.9.10 dated 2010-05-10 and 0.9.12 dated 2010-08-16
Description: Teaching GUI (A Graphical User Interface to enhance and
support modern teaching methods in an interactive way.) - basic
framework. Providing a student and a trainer interface,
containing all facilities needed to create interactive
examples, checks or ask for student feedback.
Author: Matthias Templ, Gerlinde Dinges, Alexander Kowarik, Bernhard
Meindl
Maintainer: Alexander Kowarik
DESCRIPTION | 8 ++++----
R/adminGUI.R | 2 +-
man/Tassign.Rd | 10 +++++-----
man/aTassign.Rd | 8 ++++----
man/adminGUI.Rd | 2 +-
5 files changed, 15 insertions(+), 15 deletions(-)
Title: Various programming utilities
Diff between R.utils versions 1.4.4 dated 2010-07-26 and 1.5.0 dated 2010-08-16
Description: This package provides utility classes and methods useful
when programming in R and developing R packages.
Author: Henrik Bengtsson
Maintainer: Henrik Bengtsson
DESCRIPTION | 10 +++++-----
R/stext.R |only
inst/NEWS | 4 ++++
man/stext.Rd |only
4 files changed, 9 insertions(+), 5 deletions(-)
Title: Calculation of Gst and D values characterizing the genetic
differentiation between populations.
Diff between DEMEtics versions 0.8.0 dated 2010-02-11 and 0.8.1 dated 2010-08-16
Description: Out of a table comprising allelic data of at least one
locus for several individuals and from at least two
populations, measurements of genetic differentiation (i.e. D,
Dest, Dest.Chao, Gst and Gst.est (Jost, 2008)) can be
calculated. P-values and 95% confidence intervals are
calculated according to Manly (1997) using a bootstrap method.
Thereby, for each locus, alleles are reallocated over
populations if they are all in Hardy Weinberg Equilibrium
(HWE). If not, the genotypes are reallocated, since alleles can
not be assumed to be inherited independently from each other
(Goudet, 1996). The p-values state how much the empirical found
allocation of alleles over populations differs from an
allocation that could arise by chance alone. In the case that
more than two populations are compared pairwise, the p-values
are adjusted besides using bonferroni correction in several
other ways due to the multiple comparison from one data set.
Author: Alexander Jueterbock, Philipp Kraemer, Gabriele Gerlach and
Jana Deppermann
Maintainer: Alexander Jueterbock,
DESCRIPTION | 6 +++---
man/DEMEtics.Rd | 2 +-
man/Dest.Chao.Rd | 2 --
3 files changed, 4 insertions(+), 6 deletions(-)
Title: Simulation framework
Diff between simFrame versions 0.3 dated 2010-08-10 and 0.3.1 dated 2010-08-16
Description: A general framework for statistical simulation.
Author: Andreas Alfons
Maintainer: Andreas Alfons
DESCRIPTION | 8 +-
NEWS | 6 +
R/clusterSetup.R | 120 ++++++++++++++++++++----------------
inst/doc/figures-eusilc/fig-006.pdf | 4 -
inst/doc/figures-eusilc/fig-009.pdf | 4 -
inst/doc/figures-eusilc/fig-012.pdf | 4 -
inst/doc/figures-eusilc/fig-015.pdf | 4 -
inst/doc/figures-eusilc/fig-018.pdf | 4 -
inst/doc/figures-eusilc/fig-021.pdf | 4 -
inst/doc/figures-eusilc/fig-024.pdf | 4 -
inst/doc/figures-intro/fig-013.pdf | 4 -
inst/doc/figures-intro/fig-014.pdf | 4 -
inst/doc/figures-intro/fig-022.pdf | 4 -
inst/doc/figures-intro/fig-029.pdf | 4 -
inst/doc/figures-intro/fig-030.pdf | 4 -
inst/doc/figures-intro/fig-039.pdf | 4 -
inst/doc/figures-intro/fig-040.pdf | 4 -
inst/doc/simFrame-eusilc.pdf |binary
inst/doc/simFrame-intro.pdf |binary
man/simFrame-package.Rd | 4 -
20 files changed, 108 insertions(+), 86 deletions(-)
Title: Interface to lp_solve 5.5.2.0
Diff between lpSolveAPI versions 5.5.0.15-1 dated 2009-11-27 and 5.5.2.0 dated 2010-08-16
Description: The lpSolveAPI package provides an R interface to the
lp_solve library API - lp_solve is a Mixed Integer Linear
Programming (MILP) solver with support for pure linear, (mixed)
integer/binary, semi-continuous and special ordered sets (SOS)
models.
Author: lp_solve
Maintainer: Kjell Konis
DESCRIPTION | 14 ++--
inst/doc/lpSolveAPI.pdf |binary
inst/include/lp_lib.h | 4 -
inst/include/lp_types.h | 4 -
src/lp_LUSOL.c | 4 -
src/lp_MPS.c | 2
src/lp_lib.c | 151 +++++++++++++++++++++++++++++++++++++++---------
src/lp_matrix.c | 21 ++++--
src/lp_price.c | 4 -
src/lp_scale.c | 2
src/lp_simplex.c | 2
src/lusol.c | 10 ++-
12 files changed, 166 insertions(+), 52 deletions(-)
Title: Permutation tests for linear models
Diff between lmPerm versions 1.1-0 dated 2010-02-12 and 1.1-2 dated 2010-08-16
Description: Linear model functions using permutation tests.
Author: Bob Wheeler
Maintainer: Bob Wheeler
DESCRIPTION | 8 ++++----
inst/doc/lmPerm.pdf |binary
man/Alfalfa.Rd |only
3 files changed, 4 insertions(+), 4 deletions(-)
Title: Plot publication-grade gene and genome maps
Diff between genoPlotR versions 0.5 dated 2010-06-24 and 0.5.1 dated 2010-08-16
Description: genoPlotR draws gene or genome maps and comparisons
between these, in a publication-grade manner. Starting from
simple, common files, it will draw postscript or pdf files that
can be sent as such to journals
Author: Lionel Guy
Maintainer: Lionel Guy
DESCRIPTION | 8 ++++----
inst/doc/genoPlotR.pdf |binary
man/mauve_bbone.Rd | 1 +
man/three_genes.Rd | 2 ++
4 files changed, 7 insertions(+), 4 deletions(-)
Title: Runiversal - Package for converting R objects to Java variables
and XML.
Diff between Runiversal versions 1.0 dated 2010-07-30 and 1.0.1 dated 2010-08-16
Description: This package contains some functions for converting R
objects to Java style variables and XML. Generated Java code is
interpretable by dynamic Java libraries such as Beanshell.
Calling R externally and handling the Java or XML output is an
other way to call R from other languages without native
interfaces. For a Java implemantion of this approach visit
http://www.mhsatman.com/rcaller.php
Author: Mehmet Hakan Satman
Maintainer: Mehmet Hakan Satman
DESCRIPTION | 13 +++++++------
man/Runiversal-package.Rd | 2 +-
man/cleanNames.Rd | 2 --
man/concat.Rd | 4 +---
man/makejava.Rd | 2 +-
man/makevectorjava.Rd | 2 +-
man/makevectorxml.Rd | 2 +-
man/makexml.Rd | 2 +-
8 files changed, 13 insertions(+), 16 deletions(-)
Title: Objective Bayesian Testing for the Hardy-Weinberg Equilibrium
Problem
Diff between HWEintrinsic versions 1.1 dated 2010-07-24 and 1.1.1 dated 2010-08-16
Description: This package implements the general (multiallelic)
Hardy-Weinberg equilibrium problem from an objective Bayesian
testing standpoint. This aim is achieved through the
identification of a class of priors specifically designed for
this testing problem. A class of intrinsic priors under the
full model is considered. This class is indexed by a tuning
quantity, the training sample size, as discussed in Consonni,
Moreno and Venturini (2010). These priors are objective,
satisfy Savage's continuity condition and have proved to behave
extremely well for many statistical testing problems.
Author: Sergio Venturini
Maintainer: Sergio Venturini
DESCRIPTION | 8 ++++----
man/Lindley.Rd | 4 ++++
man/simdata.Rd | 4 ++++
3 files changed, 12 insertions(+), 4 deletions(-)