Tue, 17 Aug 2010

Package rbounds updated to version 0.5 with previous version 0.4 dated 2009-10-23

Title: Perform Rosenbaum bounds sensitivity tests for matched data.
Description: Takes matched data and calculates Rosenbaum bounds for the treatment effect. Calculates bounds for binary data, Hodges-Lehmann point estimates, Wilcoxon signed-rank test, and for data with multiple matched controls. Is designed to work with the Matching package and operate on Match() objects.
Author: Luke J. Keele
Maintainer: Luke J. Keele

Diff between rbounds versions 0.4 dated 2009-10-23 and 0.5 dated 2010-08-17

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Package r4ss updated to version 1.10 with previous version 1.08 dated 2010-08-11

Title: R code for Stock Synthesis
Description: Functions for reading output, plotting, exploring and manipulating input files for Richard Methot's Stock Synthesis fisheries stock assessment modeling platform.
Author: Ian Taylor, Ian Stewart, Tommy Garrison, Andre Punt, John Wallace, and other contributors
Maintainer: Ian Taylor

Diff between r4ss versions 1.08 dated 2010-08-11 and 1.10 dated 2010-08-17

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Package nleqslv updated to version 1.7 with previous version 1.6.1 dated 2010-04-04

Title: Solve systems of non linear equations
Description: Solve a system of non linear equations using a Broyden or a Newton method with a choice of global strategies such as linesearch and trust region. There are options for using a numerical or an analytical jacobian and fixed or automatic scaling of parameters.
Author: Berend Hasselman
Maintainer: Berend Hasselman

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New package mritc with initial version 0.3-1
Package: mritc
Title: MRI tissue classification.
Version: 0.3-1
Author: Dai Feng and Luke Tierney
Description: Various methods for MRI tissue classification.
Maintainer: Dai Feng
Depends: R (>= 2.11.1), fmri (>= 1.3), AnalyzeFMRI (>= 1.1-10), misc3d (>= 0.7-0), lattice (>= 0.18-8)
License: GPL
Packaged: 2010-08-17 13:25:36 UTC; fengd
Repository: CRAN
Date/Publication: 2010-08-17 18:47:24

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Package caret updated to version 4.53 with previous version 4.51 dated 2010-08-11

Title: Classification and Regression Training
Description: Misc functions for training and plotting classification and regression models
Author: Max Kuhn. Contributions from Jed Wing, Steve Weston, Andre Williams, Chris Keefer and Allan Engelhardt
Maintainer: Max Kuhn

Diff between caret versions 4.51 dated 2010-08-11 and 4.53 dated 2010-08-17

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Package simFrame updated to version 0.3.2 with previous version 0.3.1 dated 2010-08-16

Title: Simulation framework
Description: A general framework for statistical simulation.
Author: Andreas Alfons
Maintainer: Andreas Alfons

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Package sdcMicro updated to version 2.6.5 with previous version 2.6.4 dated 2009-12-01

Title: Statistical Disclosure Control methods for the generation of public- and scientific-use files.
Description: Data from statistical agencies and other institutions are mostly confidential. This package can be used for the generation of save (micro)data, i.e. for the generation of public- and scientific-use files. The package includes also a graphical user interface.
Author: Matthias Templ
Maintainer: Matthias Templ

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Package qualityTools updated to version 1.01 with previous version 1.0 dated 2010-06-15

Title: Statistical Methods for Quality Science
Description: This is a package for teaching statistical methods in the field of Quality Science. It covers distribution fitting, process capability, Gage R&R, factorial, fractional factorial design as well as response surface methods including the use of desirability functions.
Author: Thomas Roth
Maintainer: Thomas Roth

Diff between qualityTools versions 1.0 dated 2010-06-15 and 1.01 dated 2010-08-17

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Package gRapHD updated to version 0.1.7 with previous version 0.1.6 dated 2010-03-05

Title: Efficient selection of undirected graphical models for high-dimensional datasets
Description: gRapHD is designed for efficient selection of high-dimensional undirected graphical models. The package provides tools for selecting trees, forests and decomposable models minimizing information criteria such as AIC or BIC, and for displaying the independence graphs of the models. It has also some useful tools for analysing graphical structures. It supports the use of discrete, continuous, or both types of variables.
Author: Gabriel Coelho Goncalves de Abreu , Rodrigo Labouriau , David Edwards .
Maintainer: Gabriel Coelho Goncalves de Abreu

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Package TraMineR updated to version 1.6-1 with previous version 1.6 dated 2010-04-02

Title: Sequences and trajectories mining for social scientists
Description: This package is a toolbox for sequence manipulation, description, rendering and more generally sequence data mining in the field of social sciences. Though it is primarily intended for analyzing state or event sequences that describe life courses such as family formation histories or professional careers its features apply indeed also to many other kinds of categorical sequence data. It accepts as input many different sequence representations and provides tools for translating sequences from one format to another. It offers several statistical functions for describing and rendering sequences, for computing distances between sequences with different metrics among which optimal matching, the longest common prefix and the longest common subsequence, and simple functions for extracting the most frequent subsequences and identifying the most discriminating ones among them. A user's guide can be found on TraMineR's web page.
Author: Alexis Gabadinho , Matthias Studer , Nicolas S. Muller , Gilbert Ritschard .
Maintainer: Alexis Gabadinho

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Package RcmdrPlugin.HH updated to version 1.1-26 with previous version 1.1-25 dated 2009-10-11

Title: Rcmdr support for the HH package
Description: Rcmdr menu support for many of the functions in the HH package. The focus is on menu items for functions we use in our introductory courses.
Author: Richard M. Heiberger, with contributions from Burt Holland.
Maintainer: Richard M. Heiberger

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Package nlt updated to version 2.1-1 with previous version 1.0.1 dated 2009-02-23

Title: A nondecimated lifting transform for signal denoising
Description: Uses a modified lifting algorithm on which it builds the nondecimated lifting transform. It has applications in wavelet shrinkage.
Author: Marina Knight, Matt Nunes
Maintainer: Matt Nunes

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New package isva with initial version 1.0
Package: isva
Type: Package
Title: Independent Surrogate Variable Analysis
Version: 1.0
Date: 2010-08-14
Author: Andrew E Teschendorff
Maintainer:
Depends: qvalue, fastICA
Description: Independent Surrogate Variable Analysis is a general algorithm for feature selection in the presence of potentially confounding factors.
License: GPL-2
LazyLoad: yes
Packaged: Mon Aug 16 22:56:38 2010; aet21
Repository: CRAN
Date/Publication: 2010-08-17 05:06:03

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Package constrainedKriging updated to version 0.1.2 with previous version 0.1.1 dated 2010-08-09

Title: Constrained, covariance-matching constrained and universal point or block kriging
Description: The constrainedKriging package provides functions for efficient computations of nonlinear spatial predictions with local change of support. The package supplies functions for tow-dimensional spatial interpolation by constrained, covariance-matching constrained and universal (external drift) kriging for points or block of any shape for data with a nonstationary mean function and an isotropic weakly stationary variogram. The linear spatial interpolation methods, constrained and covariance-matching constrained kriging, provide approximately unbiased prediction for nonlinear target values under change of support. The constrainedKriging package extends the range of geostatistical tools available in R and provides a veritable alternative to conditional simulation for nonlinear spatial prediction problems with local change of support.
Author: Christoph Hofer
Maintainer: Christoph Hofer

Diff between constrainedKriging versions 0.1.1 dated 2010-08-09 and 0.1.2 dated 2010-08-17

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Package adlift updated to version 1.2-3 with previous version 0.9-6 dated 2009-01-26

Title: An adaptive lifting scheme algorithm
Description: Adaptive Wavelet transforms for signal denoising
Author: Matt Nunes Marina Knight
Maintainer: Matt Nunes

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 adlift-1.2-3/adlift/R/Amatdual2.R             |only
 adlift-1.2-3/adlift/R/CubicPred.R             |  172 +++------
 adlift-1.2-3/adlift/R/CubicPredmp.R           |  286 +++++++--------
 adlift-1.2-3/adlift/R/LinearPred.R            |   84 +---
 adlift-1.2-3/adlift/R/LinearPredmp.R          |  146 +++----
 adlift-1.2-3/adlift/R/PointsUpdate.R          |  142 +++----
 adlift-1.2-3/adlift/R/PointsUpdate2.R         |only
 adlift-1.2-3/adlift/R/PointsUpdatemp.R        |  160 ++++----
 adlift-1.2-3/adlift/R/QuadPred.R              |  133 +++----
 adlift-1.2-3/adlift/R/QuadPredmp.R            |  228 ++++++------
 adlift-1.2-3/adlift/R/Rmatsolve.R             |   30 -
 adlift-1.2-3/adlift/R/UndoPointsUpdate.R      |   54 +-
 adlift-1.2-3/adlift/R/UndoPointsUpdatemp.R    |   68 +--
 adlift-1.2-3/adlift/R/adjustx.R               |  112 +++---
 adlift-1.2-3/adlift/R/artlev.R                |only
 adlift-1.2-3/adlift/R/as.column.R             |   34 -
 adlift-1.2-3/adlift/R/as.row.R                |   32 -
 adlift-1.2-3/adlift/R/basisfns.R              |  340 +++++++++---------
 adlift-1.2-3/adlift/R/condno.R                |   72 +--
 adlift-1.2-3/adlift/R/denoise.R               |  128 +++---
 adlift-1.2-3/adlift/R/denoise2.R              |only
 adlift-1.2-3/adlift/R/denoisehetero.R         |  213 +++++------
 adlift-1.2-3/adlift/R/denoisehetero2.R        |only
 adlift-1.2-3/adlift/R/denoiseheteromp.R       |  278 +++++++--------
 adlift-1.2-3/adlift/R/denoiseheteroprop.R     |  138 +++----
 adlift-1.2-3/adlift/R/denoiseheteroprop2.R    |only
 adlift-1.2-3/adlift/R/dojitter.R              |   24 -
 adlift-1.2-3/adlift/R/findadds.R              |only
 adlift-1.2-3/adlift/R/fwtnp.R                 |  274 +++++---------
 adlift-1.2-3/adlift/R/fwtnp2.R                |only
 adlift-1.2-3/adlift/R/fwtnpmp.R               |  478 +++++++++++++-------------
 adlift-1.2-3/adlift/R/getnbrs.R               |  171 +++------
 adlift-1.2-3/adlift/R/heterovar.R             |  113 ++----
 adlift-1.2-3/adlift/R/intervals.R             |   60 +--
 adlift-1.2-3/adlift/R/invtnp.R                |  209 +++++------
 adlift-1.2-3/adlift/R/invtnp2.R               |only
 adlift-1.2-3/adlift/R/invtnpmp.R              |  274 +++++++-------
 adlift-1.2-3/adlift/R/lengthintervals.R       |   85 +---
 adlift-1.2-3/adlift/R/make.signal2.R          |  188 +++++-----
 adlift-1.2-3/adlift/R/matcond.R               |   28 -
 adlift-1.2-3/adlift/R/modjitter.R             |   40 +-
 adlift-1.2-3/adlift/R/postmean.cauchy.R       |   40 +-
 adlift-1.2-3/adlift/R/pts.R                   |   55 +-
 adlift-1.2-3/adlift/R/transmatdual.R          |  119 ++----
 adlift-1.2-3/adlift/R/transmatdual2.R         |only
 adlift-1.2-3/adlift/R/zzz.R                   |   14 
 adlift-1.2-3/adlift/man/AdaptNeigh.Rd         |  378 ++++++++++----------
 adlift-1.2-3/adlift/man/AdaptNeighmp.Rd       |  184 +++++-----
 adlift-1.2-3/adlift/man/AdaptPred.Rd          |  161 ++++----
 adlift-1.2-3/adlift/man/AdaptPredmp.Rd        |  178 ++++-----
 adlift-1.2-3/adlift/man/Amatdual.Rd           |   93 ++---
 adlift-1.2-3/adlift/man/CubicPred.Rd          |  134 +++----
 adlift-1.2-3/adlift/man/CubicPredmp.Rd        |  158 ++++----
 adlift-1.2-3/adlift/man/LinearPred.Rd         |  130 +++----
 adlift-1.2-3/adlift/man/LinearPredmp.Rd       |  158 ++++----
 adlift-1.2-3/adlift/man/PointsUpdate.Rd       |  132 +++----
 adlift-1.2-3/adlift/man/PointsUpdatemp.Rd     |  205 +++++------
 adlift-1.2-3/adlift/man/QuadPred.Rd           |  116 +++---
 adlift-1.2-3/adlift/man/QuadPredmp.Rd         |  158 ++++----
 adlift-1.2-3/adlift/man/Rmatsolve.Rd          |   76 ++--
 adlift-1.2-3/adlift/man/UndoPointsUpdate.Rd   |  146 +++----
 adlift-1.2-3/adlift/man/UndoPointsUpdatemp.Rd |  211 +++++------
 adlift-1.2-3/adlift/man/adjustx.Rd            |  114 +++---
 adlift-1.2-3/adlift/man/artlev.Rd             |only
 adlift-1.2-3/adlift/man/as.column.Rd          |  106 ++---
 adlift-1.2-3/adlift/man/as.row.Rd             |   88 ++--
 adlift-1.2-3/adlift/man/basisfns.Rd           |  112 +++---
 adlift-1.2-3/adlift/man/condno.Rd             |   94 ++---
 adlift-1.2-3/adlift/man/denoise.Rd            |  113 +++---
 adlift-1.2-3/adlift/man/denoisehetero.Rd      |  111 +++---
 adlift-1.2-3/adlift/man/denoiseheteromp.Rd    |  124 +++---
 adlift-1.2-3/adlift/man/denoiseheteroprop.Rd  |  113 +++---
 adlift-1.2-3/adlift/man/dojitter.Rd           |   84 ++--
 adlift-1.2-3/adlift/man/findadds.Rd           |only
 adlift-1.2-3/adlift/man/fwtnp.Rd              |  179 ++++-----
 adlift-1.2-3/adlift/man/fwtnpmp.Rd            |  189 +++++-----
 adlift-1.2-3/adlift/man/getnbrs.Rd            |  110 ++---
 adlift-1.2-3/adlift/man/heterovar.Rd          |  114 +++---
 adlift-1.2-3/adlift/man/intervals.Rd          |   75 ++--
 adlift-1.2-3/adlift/man/invtnp.Rd             |  174 ++++-----
 adlift-1.2-3/adlift/man/invtnpmp.Rd           |  175 ++++-----
 adlift-1.2-3/adlift/man/lengthintervals.Rd    |  107 ++---
 adlift-1.2-3/adlift/man/make.signal2.Rd       |   83 ++--
 adlift-1.2-3/adlift/man/matcond.Rd            |  104 ++---
 adlift-1.2-3/adlift/man/modjitter.Rd          |   80 ++--
 adlift-1.2-3/adlift/man/motorcycledata.Rd     |   26 -
 adlift-1.2-3/adlift/man/postmean.cauchy.Rd    |   50 +-
 adlift-1.2-3/adlift/man/pts.Rd                |   87 ++--
 adlift-1.2-3/adlift/man/transmatdual.Rd       |   99 ++---
 adlift-1.2-3/adlift/src                       |only
 98 files changed, 5429 insertions(+), 5788 deletions(-)

More information about adlift at CRAN
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Package TGUITeaching updated to version 0.9.12 with previous version 0.9.10 dated 2010-05-10

Title: Teaching GUI - prototype
Description: Teaching-GUI prototype, for creating TGUI content to enhance classroom teaching supported by TGUI. A Graphical User Interface to enhance and support modern teaching methods in an interactive way.
Author: Matthias Templ, Gerlinde Dinges, Alexander Kowarik, Bernhard Meindl
Maintainer: Bernhard Meindl

Diff between TGUITeaching versions 0.9.10 dated 2010-05-10 and 0.9.12 dated 2010-08-17

 DESCRIPTION                     |    8 ++++----
 R/ex_animationMeanMedian.r      |    2 ++
 R/ex_boxplots.r                 |    1 +
 R/ex_clt.r                      |    1 +
 R/ex_dataCollection.r           |    1 +
 R/ex_eda.r                      |    1 +
 R/ex_errors.r                   |    1 +
 R/ex_feedback.r                 |    1 +
 R/ex_interactivePlotBinom.r     |    1 +
 R/ex_interactivePlotHistogram.r |    4 +++-
 R/ex_interactivePlotQQ.r        |    1 +
 R/ex_praesident.r               |    1 +
 R/ex_timeseries.r               |    1 +
 man/interactive_examples.Rd     |   14 +++++++-------
 man/simple_examples.Rd          |    5 +++--
 15 files changed, 29 insertions(+), 14 deletions(-)

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Package LDheatmap updated to version 0.2-9 with previous version 0.2-8 dated 2010-01-12

Title: Graphical display of pairwise linkage disequilibria between SNPs
Description: Produces a graphical display, as a heat map, of measures of pairwise linkage disequilibria between SNPs. Users may optionally include the physical locations or genetic map distances of each SNP on the plot.
Author: Ji-Hyung Shin , Sigal Blay , Nicholas Lewin-Koh , Brad McNeney , Jinko Graham
Maintainer: Ji-Hyung Shin

Diff between LDheatmap versions 0.2-8 dated 2010-01-12 and 0.2-9 dated 2010-08-17

 DESCRIPTION            |    8 ++++----
 data/datalist          |   14 ++------------
 inst/ChangeLog         |    4 ++++
 inst/doc/LDheatmap.pdf |binary
 4 files changed, 10 insertions(+), 16 deletions(-)

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New package IniStatR with initial version 1.0.0
Package: IniStatR
Version: 1.0.0
Date: 2010-08-17
Depends: R (>= 2.8.0)
Imports:
Enhances:
Suggests:
Title: Initiation à la Statistique avec R
Author: Frederic Bertrand , Myriam Maumy-Bertrand .
Maintainer: Frederic Bertrand
LazyLoad: yes
LazyData: yes
Description: This packages provides datasets for the book "Initiation à la Statistique avec R", Dunod, 2010.
License: GPL-3
Encoding: latin1
URL: http://www-irma.u-strasbg.fr/~fbertran/
Classification/MSC:
Packaged: 2010-08-17 01:11:52 UTC; Bertrand
Repository: CRAN
Date/Publication: 2010-08-17 05:05:34

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Package BioStatR updated to version 1.0.2 with previous version 1.0.1 dated 2010-07-29

Title: Initiation à la Statistique avec R
Description: This packages provides datasets for the book "Initiation à la Statistique avec R", Dunod, 2010.
Author: Frederic Bertrand , Myriam Maumy-Bertrand .
Maintainer: Frederic Bertrand

Diff between BioStatR versions 1.0.1 dated 2010-07-29 and 1.0.2 dated 2010-08-17

 DESCRIPTION           |    8 ++++----
 NAMESPACE             |    9 ---------
 NEWS                  |    1 +
 R/plotcdf2.R          |   28 +++++++++++++++++++++++-----
 inst/CITATION         |   20 +++++++++++++++++---
 man/Europe.Rd         |    2 +-
 man/Extrait_Taille.Rd |    3 +--
 man/Mesures.Rd        |    1 -
 man/Mesures5.Rd       |    1 -
 man/Quetelet.Rd       |    2 +-
 man/plotcdf2.Rd       |    8 ++++++--
 11 files changed, 54 insertions(+), 29 deletions(-)

More information about BioStatR at CRAN
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