CRANberries

CRANberries aggregates information about new and and updated packages from the
CRAN network for R available as this html version and a corresponding RSS feed.
Created and provided by Dirk Eddelbuettel.

Fri, 20 Aug 2010

Package mondate updated to version 0.9.08.19.02 with previous version 0.9.08.15 dated 2010-08-16

Title: Keep track of dates in terms of months
Description: Keep track of dates in month units. Perform date arithmetic in "months" (default), "years", and "days". Enable dates to have "shape" (non NULL dim). Allow "infinite" dates.
Author: Dan Murphy
Maintainer: Dan Murphy

Diff between mondate versions 0.9.08.15 dated 2010-08-16 and 0.9.08.19.02 dated 2010-08-20

 DESCRIPTION           |    8 +++----
 NAMESPACE             |    1 
 R/mondate.r           |   51 +++++++++++++++++++++++++++++++++++++++++++++-----
 man/diff.mondate.Rd   |only
 man/format.mondate.rd |    5 +++-
 man/year-methods.Rd   |   28 ++++++++++++++++++++-------
 6 files changed, 76 insertions(+), 17 deletions(-)

More information about mondate at CRAN
Path: /cran/updated | permanent link

Package magma updated to version 0.2.1-3 with previous version 0.2.1-2 dated 2010-08-13

Title: Matrix Algebra on GPU and Multicore Architectures
Description: Magma matrix classes and methods for parallel processing of matrix algebra operations. Operations are performed with algorithms developed by the MAGMA research project. MAGMA aims to achieve the fastest possible linear algebra libraries on hybrid multicore CPU and GPU architectures by exploiting their massive parallelism and minimizing communication latencies.
Author: Brian J Smith
Maintainer: Brian J Smith

Diff between magma versions 0.2.1-2 dated 2010-08-13 and 0.2.1-3 dated 2010-08-20

 ChangeLog          |   14 ++++++++++----
 DESCRIPTION        |    8 ++++----
 INSTALL            |    4 ++--
 R/Classes.r        |    4 ++--
 inst/CITATION      |    4 ++--
 man/backsolve.Rd   |    2 +-
 man/gpu.Rd         |   18 ++++++++++++++----
 man/magma-class.Rd |   17 ++++++++++++++---
 man/magma.Rd       |   14 +++++++++++---
 9 files changed, 60 insertions(+), 25 deletions(-)

More information about magma at CRAN
Path: /cran/updated | permanent link

Package ipw updated to version 1.0-6 with previous version 1.0-5 dated 2010-03-25

Title: Estimate inverse probability weights.
Description: Estimate inverse probability weights. These are typically used to perform inverse probability weighting (IPW) to fit a marginal structural model (MSM), to estimate causal effects from observational data. Both data from point treatment situations and longitudinal studies can be used.
Author: Willem M. van der Wal
Maintainer: Willem M. van der Wal

Diff between ipw versions 1.0-5 dated 2010-03-25 and 1.0-6 dated 2010-08-20

 DESCRIPTION |    6 +++---
 R/ipwtm.R   |   14 +++++++-------
 2 files changed, 10 insertions(+), 10 deletions(-)

More information about ipw at CRAN
Path: /cran/updated | permanent link

New package fmsb with initial version 0.11
Package: fmsb
Version: 0.11
Date: 2010/5/13
Title: Functions for medical statistics book with some demographic data
Author: Minato Nakazawa
Maintainer: Minato Nakazawa
Depends: R (>= 2.2.0)
Description: Several utility functions for the book entitled "Practices of Medical and Health Data Analysis using R" (Pearson Education Japan, 2007)
License: GPL (>= 2)
URL: http://phi.med.gunma-u.ac.jp/msb/
Packaged: 2010-05-13 02:13:57 UTC; nminato
Repository: CRAN
Date/Publication: 2010-08-20 20:29:48

More information about fmsb at CRAN
Path: /cran/new | permanent link

Package aspace updated to version 2.5 with previous version 2.4 dated 2010-08-19

Title: A collection of functions for estimating centrographic statistics and computational geometries for spatial point patterns
Description: A collection of functions for computing centrographic statistics (e.g., standard distance, standard deviation ellipse, standard deviation box), and minimum convex polygons (MCP) for observations taken at point locations. A tool is also provided for converting geometric objects associated with the centrographic statistics, and MCPs into ESRI Shapefiles. Separate plotting functions have been developed for each measure.
Author: Randy Bui, Ron N. Buliung, Tarmo K. Remmel
Maintainer: Ron N. Buliung

Diff between aspace versions 2.4 dated 2010-08-19 and 2.5 dated 2010-08-20

 DESCRIPTION           |    8 ++++----
 R/ellipse3.R          |    7 ++++---
 man/aspace.package.Rd |    4 ++--
 man/ellipse3.Rd       |    2 +-
 4 files changed, 11 insertions(+), 10 deletions(-)

More information about aspace at CRAN
Path: /cran/updated | permanent link

Package NMF updated to version 0.5 with previous version 0.4.8 dated 2010-06-28

Title: Algorithms and framework for Nonnegative Matrix Factorization (NMF).
Description: This package provides a framework to perform Non-negative Matrix Factorization (NMF). It implements a set of already published algorithms and seeding methods, and provides a framework to test, develop and plug new/custom algorithms. Most of the built-in algorithms have been optimized in C++, and the main interface function provides an easy way of performing parallel computations on multicore machines.
Author: Renaud Gaujoux
Maintainer: Renaud Gaujoux

Diff between NMF versions 0.4.8 dated 2010-06-28 and 0.5 dated 2010-08-20

 DESCRIPTION                    |   11 +-
 NAMESPACE                      |   19 +++--
 NEWS                           |   58 +++++++++++++++
 R/NMF-class.R                  |  109 +++++++++++++++++++++++------
 R/NMFSet-class.R               |   10 ++
 R/NMFStrategy-class.R          |    3 
 R/NMFStrategyIterative-class.R |    8 +-
 R/NMFfit-class.R               |   46 +++++-------
 R/nmf.R                        |  128 +++++++++++++++++++++++++++++-----
 R/nndsvd.R                     |    1 
 R/snmf.R                       |   61 +++++++++++++---
 R/utils.R                      |   13 +++
 inst/CITATION                  |only
 inst/doc/NMF-vignette.Rnw      |  150 +++++++++++++++++++++++++--------------
 inst/doc/NMF-vignette.pdf      |binary
 inst/matlab/brunet-run.m       |   19 +++--
 inst/matlab/brunet.R           |   50 +++++++++----
 inst/matlab/brunet.m           |   14 +++
 man/NMF-class.Rd               |   36 +++++----
 man/NMF-package.Rd             |   11 ++
 man/NMF-utils.Rd               |    2 
 man/NMFList.Rd                 |    2 
 man/NMF[-methods.Rd            |only
 man/NMFfit-class.Rd            |   36 +++++++--
 man/NMFfitXn.Rd                |    2 
 man/advanced.Rd                |  154 ++++++++++-------------------------------
 man/basis-methods.Rd           |    6 -
 man/dimnames-methods.Rd        |only
 man/fcnnls.Rd                  |only
 man/nmf-methods.Rd             |  102 +++++++++++++++++++++------
 man/nmfModel.Rd                |   28 +++++--
 man/options.Rd                 |only
 man/rmatrix.Rd                 |only
 33 files changed, 747 insertions(+), 332 deletions(-)

More information about NMF at CRAN
Path: /cran/updated | permanent link

Package HFWutils updated to version 0.9.4.2010.08.20 with previous version 0.9.3.2009.12.07 dated 2009-12-09

Title: csv import, csv export, garbage collection,string matching and passing by reference
Description: package containing functions for convenient csv import and export with a view of using R as a calculation back end to spreadsheet-like programs such as scalc in open office; string matching and passing by reference
Author: Felix Wittmann
Maintainer: Felix Wittmann

Diff between HFWutils versions 0.9.3.2009.12.07 dated 2009-12-09 and 0.9.4.2010.08.20 dated 2010-08-20

 DESCRIPTION             |   10 ++++----
 man/ByRef.Rd            |    1 
 man/Clean-methods.Rd    |    6 ++--
 man/ExcelDate.Rd        |    6 ++--
 man/Matches.Rd          |    8 +++---
 man/MatchesIndices.Rd   |    8 +++---
 man/align.Rd            |    8 +++---
 man/cleanTexts.Rd       |    6 ++--
 man/df2matrix.Rd        |   32 +++++++++++++-------------
 man/doReplace.Rd        |    6 ++--
 man/excelDate2Date.Rd   |    8 +++---
 man/export.R2X.Files.Rd |    4 +--
 man/extractFromList.Rd  |    8 +++---
 man/getFunctionName.Rd  |   10 ++++----
 man/import.X2R.Files.Rd |    8 +++---
 man/initReplaceBy.Rd    |    6 ++--
 man/largeDataframe.Rd   |    4 +--
 man/logDataframe.Rd     |   58 ++++++++++++++++++++++++------------------------
 man/logMessage.Rd       |    6 ++--
 man/matrix2df.Rd        |    6 ++--
 man/sourceRfiles.Rd     |    6 ++--
 21 files changed, 107 insertions(+), 108 deletions(-)

More information about HFWutils at CRAN
Path: /cran/updated | permanent link

Package vegan updated to version 1.17-4 with previous version 1.17-3 dated 2010-06-16

Title: Community Ecology Package
Description: Ordination methods, diversity analysis and other functions for community and vegetation ecologists.
Author: Jari Oksanen, F. Guillaume Blanchet, Roeland Kindt, Pierre Legendre, R. B. O'Hara, Gavin L. Simpson, Peter Solymos, M. Henry H. Stevens, Helene Wagner
Maintainer: Jari Oksanen

Diff between vegan versions 1.17-3 dated 2010-06-16 and 1.17-4 dated 2010-08-20

 DESCRIPTION                  |   10 ++--
 R/MOStest.R                  |only
 R/adonis.R                   |    1 
 R/confint.MOStest.R          |only
 R/decorana.R                 |    4 -
 R/fieller.MOStest.R          |only
 R/mrpp.R                     |   11 ++--
 R/msoplot.R                  |    2 
 R/ordiellipse.R              |   21 +++++---
 R/ordigrid.R                 |    9 ++-
 R/plot.MOStest.R             |only
 R/predict.cca.R              |    3 +
 R/predict.rda.R              |    4 +
 R/print.MOStest.R            |only
 R/print.adonis.R             |    2 
 R/profile.MOStest.R          |only
 R/summary.meandist.R         |    2 
 R/veganCovEllipse.R          |only
 R/vegdist.R                  |    2 
 inst/ChangeLog               |   41 ++++++++++++++++
 inst/NEWS                    |   35 ++++++++++++++
 inst/doc/FAQ-vegan.pdf       |binary
 inst/doc/FAQ-vegan.texi      |   32 +++++++++----
 inst/doc/decision-vegan.pdf  |binary
 inst/doc/decision-vegan.tex  |   16 +++---
 inst/doc/diversity-vegan.pdf |binary
 inst/doc/diversity-vegan.tex |   56 +++++++++++------------
 inst/doc/intro-vegan.Rnw     |   10 ++--
 inst/doc/intro-vegan.pdf     |binary
 inst/doc/intro-vegan.tex     |   72 +++++++++++++----------------
 man/MOStest.Rd               |only
 man/adipart.Rd               |    2 
 man/contribdiv.Rd            |    2 
 man/decostand.Rd             |   14 ++---
 man/dispindmorisita.Rd       |    2 
 man/mrpp.Rd                  |   80 ++++++++++++++++-----------------
 man/mso.Rd                   |    4 -
 man/multipart.Rd             |    4 -
 man/ordihull.Rd              |    5 +-
 man/permCheck.Rd             |    6 +-
 man/permatfull.Rd            |    3 -
 man/permuted.index2.Rd       |    4 -
 man/predict.cca.Rd           |   81 ++++++++++++++++++---------------
 man/radfit.Rd                |    5 +-
 man/specpool.Rd              |    4 -
 man/tsallis.Rd               |    2 
 man/vegan-internal.Rd        |    4 +
 man/vegdist.Rd               |  104 ++++++++++++++++++++++---------------------
 man/wcmdscale.Rd             |    4 -
 49 files changed, 392 insertions(+), 271 deletions(-)

More information about vegan at CRAN
Path: /cran/updated | permanent link

New package mutossGUI with initial version 0.1-2
Package: mutossGUI
Version: 0.1-2
Date: 2010-08-16
Title: A graphical user interface for the MuToss Project
Author: Kornelius Rohmeyer
Maintainer: Kornelius Rohmeyer
Description: A graphical user interface for the MuToss Project
Depends: R (>= 2.8.0), rJava (>= 0.8-0), JavaGD (>= 0.5-2), plotrix, mutoss (>= 0.1-0), multcomp
SystemRequirements: Java (>= 5.0)
License: GPL
Packaged: 2010-08-19 20:22:56 UTC; kornel
Repository: CRAN
Date/Publication: 2010-08-20 04:39:07

More information about mutossGUI at CRAN
Path: /cran/new | permanent link

Package lordif updated to version 0.1-6 with previous version 0.1-5 dated 2010-07-09

Title: Logistic Regression Differential Item Functioning using IRT
Description: Analysis of Differential Item Functioning (DIF) for dichotomous and polytomous items using an iterative hybrid of (ordinal) logistic regression and item response theory (IRT)
Author: Seung W. Choi, with contributions from Laura E. Gibbons and Paul K. Crane
Maintainer: Seung W. Choi

Diff between lordif versions 0.1-5 dated 2010-07-09 and 0.1-6 dated 2010-08-20

 DESCRIPTION           |    8 ++++----
 R/print.lordif.R      |    3 ++-
 man/lordif-package.Rd |    4 ++--
 man/lordif.Rd         |    6 +++++-
 4 files changed, 13 insertions(+), 8 deletions(-)

More information about lordif at CRAN
Path: /cran/updated | permanent link

Package futile.paradigm updated to version 1.0.2 with previous version 1.0.1 dated 2010-08-18

Title: A framework for working in a functional programming paradigm in R
Description: Provides dispatching implementations suitable for functional programming paradigms. The framework provides a mechanism for attaching guards to functions similar to Erlang, while also providing the safety of assertions reminiscent of Eiffel.
Author: Brian Lee Yung Rowe
Maintainer: Brian Lee Yung Rowe

Diff between futile.paradigm versions 1.0.1 dated 2010-08-18 and 1.0.2 dated 2010-08-20

 DESCRIPTION                    |    8 ++++----
 R/crud.R                       |    6 +++---
 R/functional.R                 |    6 +++++-
 inst/unitTests/runit.crud.R    |   23 +++++++++++++++++------
 man/crud.Rd                    |   27 ++++++++++++---------------
 man/futile.paradigm-package.Rd |    4 ++--
 man/guard.Rd                   |   14 +++++++++++---
 7 files changed, 54 insertions(+), 34 deletions(-)

More information about futile.paradigm at CRAN
Path: /cran/updated | permanent link

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