CRANberries

CRANberries aggregates information about new and and updated packages from the
CRAN network for R available as this html version and a corresponding RSS feed.
Created and provided by Dirk Eddelbuettel.

Thu, 26 Aug 2010

Package pscl updated to version 1.03.6 with previous version 1.03.5 dated 2010-04-13

Title: Political Science Computational Laboratory, Stanford University
Description: Bayesian analysis of item-response theory (IRT) models, roll call analysis; computing highest density regions; maximum likelihood estimation of zero-inflated and hurdle models for count data; goodness-of-fit measures for GLMs; data sets used in writing and teaching at the Political Science Computational Laboratory; seats-votes curves.
Author: Simon Jackman, with contributions from Alex Tahk, Achim Zeileis, Christina Maimone and Jim Fearon
Maintainer: Simon Jackman

Diff between pscl versions 1.03.5 dated 2010-04-13 and 1.03.6 dated 2010-08-26

 DESCRIPTION           |   10 +++++-----
 NEWS                  |    3 +++
 R/hurdle.R            |    4 ++--
 R/zeroinfl.R          |    2 +-
 inst/doc/auto         |only
 inst/doc/countreg.Rnw |   22 +++++++++++-----------
 inst/doc/countreg.pdf |binary
 man/hurdletest.Rd     |    8 ++++----
 man/zeroinfl.Rd       |    3 ++-
 9 files changed, 28 insertions(+), 24 deletions(-)

More information about pscl at CRAN
Path: /cran/updated | permanent link

Package muRL updated to version 0.1-5 with previous version 0.1-4 dated 2009-10-29

Title: Mailmerge using R, LaTeX, and the Web
Description: Provides mailmerge methods for reading spreadsheets of addresses and other relevant information to create standardized but customizable letters. Provides a method for mapping US ZIP codes, including those of letter recipients. Provides a method for parsing and processing html code from online job postings of the American Political Science Association.
Author: Ryan T. Moore and Andrew Reeves
Maintainer: Ryan T. Moore

Diff between muRL versions 0.1-4 dated 2009-10-29 and 0.1-5 dated 2010-08-26

 CHANGELOG           |    5 +++++
 DESCRIPTION         |    8 ++++----
 LICENSE             |    2 +-
 R/apsahtml2csv.R    |    7 +++++--
 man/murl-package.Rd |    4 ++--
 5 files changed, 17 insertions(+), 9 deletions(-)

More information about muRL at CRAN
Path: /cran/updated | permanent link

Package caret updated to version 4.57 with previous version 4.54 dated 2010-08-18

Title: Classification and Regression Training
Description: Misc functions for training and plotting classification and regression models
Author: Max Kuhn. Contributions from Jed Wing, Steve Weston, Andre Williams, Chris Keefer and Allan Engelhardt
Maintainer: Max Kuhn

Diff between caret versions 4.54 dated 2010-08-18 and 4.57 dated 2010-08-26

 DESCRIPTION                 |    8 
 NAMESPACE                   |    5 
 R/createGrid.R              |   14 
 R/createModel.R             |   19 
 R/earthVarImp.R             |    6 
 R/misc.R                    |  981 ++++++--------------------------------------
 R/modelLookup.R             |only
 R/plsVarImp.R               |    2 
 R/predictionFunction.R      |  318 ++++++--------
 R/print.varImp.train.R      |    2 
 R/resampleHist.R            |   63 +-
 R/train.default.R           |   81 +--
 inst/NEWS                   |   45 +-
 inst/doc/caretMisc.pdf      |binary
 inst/doc/caretSelection.pdf |binary
 inst/doc/caretTrain.R       |    2 
 inst/doc/caretTrain.pdf     |binary
 inst/doc/caretVarImp.pdf    |binary
 man/modelLookup.Rd          |only
 man/varImp.Rd               |    4 
 20 files changed, 457 insertions(+), 1093 deletions(-)

More information about caret at CRAN
Path: /cran/updated | permanent link

Package WGCNA updated to version 0.93 with previous version 0.92-3 dated 2010-07-26

Title: Weighted Gene Co-Expression Network Analysis
Description: Functions necessary to perform Weighted Gene Co-Expression Network Analysis
Author: Peter Langfelder and Steve Horvath with contributions by Jun Dong, Jeremy Miller, Lin Song, Andy Yip, and Bin Zhang
Maintainer: Peter Langfelder

Diff between WGCNA versions 0.92-3 dated 2010-07-26 and 0.93 dated 2010-08-26

 WGCNA-0.92-3/WGCNA/list.txt                 |only
 WGCNA-0.92-3/WGCNA/notes                    |only
 WGCNA-0.92-3/WGCNA/support                  |only
 WGCNA-0.93/WGCNA/Changelog                  |    8 +
 WGCNA-0.93/WGCNA/DESCRIPTION                |   14 +--
 WGCNA-0.93/WGCNA/R/AUV2predicted.R          |only
 WGCNA-0.93/WGCNA/R/modulePreservation.R     |  126 ++++++++++++++++++++++------
 WGCNA-0.93/WGCNA/R/mutualInfoAdjacency.R    |only
 WGCNA-0.93/WGCNA/man/AUV2predicted.Rd       |only
 WGCNA-0.93/WGCNA/man/WGCNA-package.Rd       |   20 ++--
 WGCNA-0.93/WGCNA/man/labeledHeatmap.Rd      |    3 
 WGCNA-0.93/WGCNA/man/mutualInfoAdjacency.Rd |only
 12 files changed, 131 insertions(+), 40 deletions(-)

More information about WGCNA at CRAN
Path: /cran/updated | permanent link

Package RSAGA updated to version 0.91-1 with previous version 0.9-7 dated 2010-06-02

Title: SAGA Geoprocessing and Terrain Analysis in R
Description: RSAGA provides access to geocomputing and terrain analysis functions of SAGA from within R by running the command line version of SAGA. In addition, several R functions for handling and manipulating ASCII grids are provided, including a flexible framework for applying local functions (including predict methods of fitted models) or focal functions to multiple grids. SAGA is available under GPL via http://sourceforge.net/projects/saga-gis/.
Author: Alexander Brenning
Maintainer: Alexander Brenning

Diff between RSAGA versions 0.9-7 dated 2010-06-02 and 0.91-1 dated 2010-08-26

 DESCRIPTION                   |    8 -
 R/RSAGA-core.R                |   40 ++----
 R/RSAGA-modules.R             |  259 +++++++++++++++++++++++++++++-------------
 man/RSAGA-package.Rd          |   10 -
 man/rsaga.geoprocessor.Rd     |    5 
 man/rsaga.grid.calculus.Rd    |    9 +
 man/rsaga.grid.to.points.Rd   |    3 
 man/rsaga.import.gdal.Rd      |    6 
 man/rsaga.insolation.Rd       |    4 
 man/rsaga.inverse.distance.Rd |   17 ++
 man/rsaga.solar.radiation.Rd  |    6 
 man/rsaga.target.Rd           |    4 
 12 files changed, 247 insertions(+), 124 deletions(-)

More information about RSAGA at CRAN
Path: /cran/updated | permanent link

New package SMCP with initial version 1.1.1
Package: SMCP
Type: Package
Title: The fit for marglinalized linear model with SMCP penalties.
Version: 1.1.1
Date: 2010-04-28
Author: Jin (Gordon) Liu
Maintainer: Jin (Gordon) Liu
Description: A package containing functions that generate microarray data, fit the marginalized linear model with MCP and QA penalties and conduct cross-validation to select the tuning parameter.
License: GPL
Packaged: 2010-08-25 16:16:29 UTC; jliu20
Repository: CRAN
Date/Publication: 2010-08-26 06:42:48

More information about SMCP at CRAN
Path: /cran/new | permanent link

Package CHNOSZ updated to version 0.9-2 with previous version 0.9-1 dated 2010-07-24

Title: Chemical Thermodynamics and Activity Diagrams
Description: Calculation of the standard molal thermodynamic properties and chemical affinities of reactions between and among minerals, inorganic, organic, and/or biomolecular aqueous and crystalline species. Incorporation of an extensive database of thermodynamic properties of species and algorithms for computing the standard thermodynamic properties of neutral and ionized proteins from amino acid group contributions. Generation of chemical speciation and predominance diagrams for stable and metastable equilibrium in open systems as a function of temperature, pressure, and chemical activities or fugacities of basis species.
Author: Jeffrey M. Dick
Maintainer: Jeffrey M. Dick

Diff between CHNOSZ versions 0.9-1 dated 2010-07-24 and 0.9-2 dated 2010-08-26

 DESCRIPTION |    8 ++++----
 inst/NEWS   |    3 +++
 man/data.Rd |    1 +
 man/info.Rd |    1 +
 4 files changed, 9 insertions(+), 4 deletions(-)

More information about CHNOSZ at CRAN
Path: /cran/updated | permanent link

New package QuACN with initial version 1.0
Package: QuACN
Type: Package
Title: What the package does (short line)
Version: 1.0
Date: 2010-05-27
Author: Laurin Mueller
Maintainer: Laurin Mueller
Description: Quantitative Analysis of Complex Networks. This package offers a set of topological network measures to analyze complex Networks structurally.
License: LGPL
LazyLoad: yes
Depends: graph, RBGL, igraph, combinat, Rgraphviz
Packaged: 2010-08-25 14:40:23 UTC; laurin
Repository: CRAN
Date/Publication: 2010-08-26 06:42:34

More information about QuACN at CRAN
Path: /cran/new | permanent link

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