Title: A Collection of functions for similarity analysis of vegetation
data
Diff between simba versions 0.3-1 dated 2010-07-25 and 0.3-2 dated 2010-08-27
Description: Besides functions for the calculation of similarity and
multiple plot similarity measures with binary data (for
instance presence/absence species data) the package contains
some simple wrapper functions for reshaping species lists into
matrices and vice versa and some other functions for further
processing of similarity data (Mantel-like permutation
procedures) as well as some other useful stuff for vegetation
analysis.
Author: Gerald Jurasinski
Maintainer: Gerald Jurasinski
simba-0.3-1/simba/inst/doc/simba_0.3-1_man.pdf |only
simba-0.3-2/simba/DESCRIPTION | 29 +++++++-------
simba-0.3-2/simba/R/rin.R | 25 ++++++++----
simba-0.3-2/simba/R/simbadocs.R | 2
simba-0.3-2/simba/R/zzz.R |only
simba-0.3-2/simba/inst/ChangeLog | 12 +++++
simba-0.3-2/simba/inst/doc/simba_0.3-2_man.pdf |only
simba-0.3-2/simba/man/abis.Rd | 6 +-
simba-0.3-2/simba/man/auc.Rd | 5 +-
simba-0.3-2/simba/man/bb2num.Rd | 3 -
simba-0.3-2/simba/man/bernina.Rd |only
simba-0.3-2/simba/man/com.sim.Rd | 2
simba-0.3-2/simba/man/dfcor.Rd | 3 -
simba-0.3-2/simba/man/diffmich.Rd | 5 +-
simba-0.3-2/simba/man/diffslope.Rd | 3 -
simba-0.3-2/simba/man/dist.tmp.Rd | 7 ++-
simba-0.3-2/simba/man/occ.time.Rd | 3 -
simba-0.3-2/simba/man/pcol.Rd | 10 ++--
simba-0.3-2/simba/man/rin.Rd | 51 +++++++++++++++----------
simba-0.3-2/simba/man/sim.Rd | 5 +-
simba-0.3-2/simba/man/sim.tmp.Rd | 2
simba-0.3-2/simba/man/simba-package.Rd | 5 +-
simba-0.3-2/simba/man/simbadocs.Rd | 2
23 files changed, 114 insertions(+), 66 deletions(-)
Title: Matrix Algebra on GPU and Multicore Architectures
Diff between magma versions 0.2.1-3 dated 2010-08-20 and 0.2.2-1 dated 2010-08-27
Description: Magma matrix classes and methods for parallel processing
of matrix algebra operations. Operations are performed with
algorithms developed by the MAGMA research project. MAGMA aims
to achieve the fastest possible linear algebra libraries on
hybrid multicore CPU and GPU architectures by exploiting their
massive parallelism and minimizing communication latencies.
Author: Brian J Smith
Maintainer: Brian J Smith
ChangeLog | 20 ++++++++++++++++++++
DESCRIPTION | 8 ++++----
INSTALL | 13 +++++++------
configure | 16 +++++++---------
configure.ac | 9 ++-------
inst/CITATION | 8 ++++----
src/magFactors.c | 28 ++++++++++++++++++----------
src/magSolvers.c | 12 ++++++++----
8 files changed, 70 insertions(+), 44 deletions(-)
Title: Interface between GMT Map-Making Software and R
Diff between gmt versions 1.1-4 dated 2010-02-17 and 1.1-6 dated 2010-08-27
Description: Interface between the GMT map-making software and R,
enabling the user to manipulate geographic data within R and
call GMT commands to draw and annotate maps in postscript
format. The 'gmt' package is about interactive data analysis,
rapidly visualizing subsets and summaries of geographic data,
while performing statistical analysis in the R console.
Author: Arni Magnusson
Maintainer: Arni Magnusson
gmt-1.1-4/gmt/INDEX |only
gmt-1.1-6/gmt/DESCRIPTION | 8 ++++----
gmt-1.1-6/gmt/NEWS | 9 +++++++++
gmt-1.1-6/gmt/R/psbar.R | 2 +-
4 files changed, 14 insertions(+), 5 deletions(-)
Title: Procedures to generate IRT adaptive tests (CAT)
Diff between catR versions 1.0 dated 2010-06-14 and 1.1 dated 2010-08-27
Description: The catR package allows the generation of response
patterns under computerized adaptive testing (CAT) framework,
with the choice of several starting rules, stopping rules and
ability estimators.
Author: David Magis (U Liege, Belgium), Gilles Raiche (UQAM, Canada)
Maintainer: David Magis
DESCRIPTION | 8 ++++----
NEWS |only
R/nextItem.R | 21 ++++++++++++++++++---
R/randomCAT.R | 12 +++++++-----
R/testList.R | 14 +++++++++-----
inst/doc/Rd2.pdf |binary
man/nextItem.Rd | 31 ++++++++++++++++++++++++++-----
man/randomCAT.Rd | 27 ++++++++++++++++++---------
man/testList.Rd | 9 ++++-----
9 files changed, 86 insertions(+), 36 deletions(-)
Title: Convenient Tools for Working with Oracle Databases
Diff between ROracleUI versions 1.0-0 dated 2010-01-23 and 1.1-3 dated 2010-08-27
Description: Easy-to-use functions to explore Oracle databases and
import data into R. User interface for the ROracle package.
Author: Arni Magnusson
Maintainer: Arni Magnusson
ROracleUI-1.0-0/ROracleUI/INDEX |only
ROracleUI-1.0-0/ROracleUI/inst |only
ROracleUI-1.1-3/ROracleUI/DESCRIPTION | 12 ++++++------
ROracleUI-1.1-3/ROracleUI/NEWS |only
ROracleUI-1.1-3/ROracleUI/man/ROracleUI-package.Rd | 2 +-
ROracleUI-1.1-3/ROracleUI/man/as.POSIXct.data.frame.Rd | 3 +--
ROracleUI-1.1-3/ROracleUI/man/desc.Rd | 5 ++---
ROracleUI-1.1-3/ROracleUI/man/sql.Rd | 3 +--
ROracleUI-1.1-3/ROracleUI/man/tables.Rd | 1 -
ROracleUI-1.1-3/ROracleUI/man/to_char.Rd | 1 -
ROracleUI-1.1-3/ROracleUI/man/views.Rd | 1 -
11 files changed, 11 insertions(+), 17 deletions(-)
Title: Hierarchical time series
Diff between hts versions 1.3 dated 2010-08-19 and 1.4 dated 2010-08-27
Description: Methods for analysing and forecasting hierarchical time
series.
Author: Rob J Hyndman, Roman A Ahmed, and Han Lin Shang
Maintainer: Han Lin Shang
hts-1.3/hts/ChangeLog.txt |only
hts-1.4/hts/CHANGELOG |only
hts-1.4/hts/DESCRIPTION | 8 ++++----
hts-1.4/hts/R/forecast.hts.R | 12 ++++++------
4 files changed, 10 insertions(+), 10 deletions(-)
Title: Bayesian spectral inference
Diff between bspec versions 1.1 dated 2008-04-29 and 1.2 dated 2010-08-27
Description: Bayesian inference on the (discrete) power spectrum of
time series.
Author: Christian Roever
Maintainer: Christian Roever
DESCRIPTION | 11 +++++++----
R/BayesSpecS3.R | 12 +++++++++---
inst/CITATION | 14 +++++++-------
man/acf.Rd | 2 +-
man/bspec.Rd | 2 +-
man/expectation.Rd | 2 +-
man/likelihood.Rd | 2 +-
man/onesided.Rd | 2 +-
man/ppsample.Rd | 2 +-
man/quantile.Rd | 2 +-
man/sample.Rd | 2 +-
man/temper.Rd | 2 +-
man/temperature.Rd | 2 +-
13 files changed, 33 insertions(+), 24 deletions(-)
Title: Power and Sample size based on two one-sided t-tests (TOST) for
bioequivalence studies
Diff between PowerTOST versions 0.7-1 dated 2010-08-12 and 0.7-2 dated 2010-08-27
Description: Contains functions to calculate power and sample size for
various study designs used for bioequivalence studies. See
function known.designs() for study designs covered. Moreover
the package contains functions for power and sample size based
on 'expected' power in case of uncertain (estimated)
variability. Added are functions for the power and sample size
for the ratio of two means with normally distributed data on
the original scale (based on Fieller's confidence ('fiducial')
interval).
Author: Detlew Labes
Maintainer: D. Labes
DESCRIPTION | 8 ++++----
NEWS | 3 +++
R/DesignHelpers.R | 6 +++++-
man/PowerTOST-package.Rd | 4 ++--
man/power.RatioF.Rd | 2 +-
man/sampleN.RatioF.Rd | 4 ++--
6 files changed, 17 insertions(+), 10 deletions(-)
Title: Read, write, format Excel 2007 (xlsx) files
Diff between xlsx versions 0.2.2 dated 2010-07-24 and 0.2.3 dated 2010-08-27
Description: Provide R functions to read/write/format Excel 2007 (xlsx)
file formats.
Author: Adrian A. Dragulescu
Maintainer: Adrian A. Dragulescu
DESCRIPTION | 8 ++++----
NEWS | 11 +++++++++++
R/Cell.R | 16 +++++++++++++---
R/CellStyle.R | 8 ++++----
inst/doc/xlsx.pdf |binary
inst/tests/test.formats.R | 7 ++++++-
inst/tests/test.import.R | 7 +++++--
inst/tests/test_import.xlsx |binary
man/xlsx-package.Rd | 4 ++--
other/make.package.R | 2 +-
10 files changed, 46 insertions(+), 17 deletions(-)
Title: VAR Modelling
Diff between vars versions 1.4-7 dated 2010-03-01 and 1.4-8 dated 2010-08-27
Description: Estimation, lag selection, diagnostic testing,
forecasting, causality analysis, forecast error variance
decomposition and impulse response functions of VAR models and
estimation of SVAR/SVEC models.
Author: Bernhard Pfaff
Maintainer: Bernhard Pfaff
DESCRIPTION | 10 +++++-----
R/internal.R | 3 ++-
inst/ChangeLog | 5 +++++
inst/doc/vars.pdf |binary
4 files changed, 12 insertions(+), 6 deletions(-)
Title: Tweedie exponential family models
Diff between tweedie versions 2.0.2 dated 2009-11-17 and 2.0.5 dated 2010-08-27
Description: Maximum likelihood computations for Tweedie families.
Author: Peter K Dunn
Maintainer: Peter K Dunn
tweedie-2.0.2/tweedie/CITATION |only
tweedie-2.0.5/tweedie/CHANGE.log | 15 +
tweedie-2.0.5/tweedie/DESCRIPTION | 10 -
tweedie-2.0.5/tweedie/R/tweedie.R | 214 ++++++++++++++++-----------
tweedie-2.0.5/tweedie/inst |only
tweedie-2.0.5/tweedie/man/tweedie-package.Rd | 4
tweedie-2.0.5/tweedie/man/tweedie.profile.Rd | 15 +
7 files changed, 165 insertions(+), 93 deletions(-)
Title: R version of GENetic Optimization Using Derivatives
Diff between rgenoud versions 5.6-7 dated 2010-06-01 and 5.7-1 dated 2010-08-27
Description: A genetic algorithm plus derivative optimizer
Author: Walter R. Mebane, Jr.
Maintainer: Jasjeet Singh Sekhon
ChangeLog | 23 ++++++++------
DESCRIPTION | 8 ++---
inst/doc/rgenoud.pdf |binary
src/evaluate.cpp | 12 +++----
src/genoud.h | 5 +--
src/operators.cpp | 80 +++++++++++++++++++++++++++++++++++++--------------
src/print_format.cpp | 6 +--
7 files changed, 88 insertions(+), 46 deletions(-)
Title: Routines for fitting kinetic models with one or more state
variables to chemical degradation data
Diff between mkin versions 0.7-6 dated 2010-06-09 and 0.7-8 dated 2010-08-27
Description: Calculation routines based on the FOCUS Kinetics Report
(2006). Includes a function for conveniently defining
differential equation models, choice of the optimisation
methods made available by the FME package (default is a
Levenberg-Marquardt variant). Please note that no warranty is
implied for correctness of results or fitness for a particular
purpose.
Author: Johannes Ranke
Maintainer: Johannes Ranke
mkin-0.7-6/mkin/TODO |only
mkin-0.7-6/mkin/test.R |only
mkin-0.7-8/mkin/DESCRIPTION | 16 +++++---
mkin-0.7-8/mkin/R/mkin_long_to_wide.R | 20 ++++++++++
mkin-0.7-8/mkin/R/mkin_wide_to_long.R | 20 ++++++++++
mkin-0.7-8/mkin/R/mkinerrmin.R | 20 ++++++++++
mkin-0.7-8/mkin/R/mkinfit.R | 46 +++++++++++++++++++++++--
mkin-0.7-8/mkin/R/mkinmod.R | 20 ++++++++++
mkin-0.7-8/mkin/inst/doc/mkin.Rnw | 1
mkin-0.7-8/mkin/inst/doc/mkin.pdf |binary
mkin-0.7-8/mkin/inst/unitTests/runit.mkinfit.R | 20 ++++++++++
mkin-0.7-8/mkin/inst/unitTests/runit.mkinmod.R | 20 ++++++++++
mkin-0.7-8/mkin/man/summary.mkinfit.Rd | 8 +++-
mkin-0.7-8/mkin/tests/doRUnit.R | 2 +
14 files changed, 183 insertions(+), 10 deletions(-)
Title: Tools for reading and handling spatial objects
Diff between maptools versions 0.7-36 dated 2010-08-12 and 0.7-37 dated 2010-08-27
Description: Set of tools for manipulating and reading geographic data,
in particular ESRI shapefiles; C code used from shapelib. It
includes binary access to GSHHS shoreline files. The package
also provides interface wrappers for exchanging spatial objects
with packages such as PBSmapping, spatstat, maps, RArcInfo,
Stata tmap, WinBUGS, Mondrian, and others.
Author: Nicholas J. Lewin-Koh and Roger Bivand, contributions by Edzer
J. Pebesma, Eric Archer, Adrian Baddeley, Hans-Jörg Bibiko,
Stéphane Dray, David Forrest, Michael Friendly, Patrick
Giraudoux, Duncan Golicher, Virgilio Gómez Rubio, Patrick
Hausmann, Thomas Jagger, Sebastian P. Luque, Don MacQueen,
Andrew Niccolai, Tom Short and Ben Stabler
Maintainer: Roger Bivand
DESCRIPTION | 8 ++++----
R/readGPS.R | 2 +-
2 files changed, 5 insertions(+), 5 deletions(-)
Title: Estimate a Log-Concave Probability Density from iid Observations
Diff between logcondens versions 1.3.5 dated 2009-12-07 and 2.0.0 dated 2010-08-27
Description: Given independent and identically distributed observations
X(1), ..., X(n), this package allows to compute the maximum
likelihood estimator (MLE) of a density as well as a smoothed
version of it under the assumption that the density is
log-concave, see Rufibach (2007) and Duembgen and Rufibach
(2009). The main function of the package is 'logConDens' that
allows computation of the log-concave MLE and its smoothed
version. In addition, we provide functions to compute (1) the
value of the density and distribution function estimates (MLE
and smoothed) at a given point (2) the characterizing functions
of the estimator, (3) to sample from the estimated
distribution, and (5) to compute a two-sample permutation test
based on log-concave densities. Finally, two datasets that have
been used to illustrate log-concave density estimation are made
available.
Author: Kaspar Rufibach
Maintainer: Kaspar Rufibach
logcondens-1.3.5/logcondens/R/logconSmoothed.R |only
logcondens-1.3.5/logcondens/man/logconSmoothed.Rd |only
logcondens-2.0.0/logcondens/CHANGES | 5
logcondens-2.0.0/logcondens/DESCRIPTION | 42 +++----
logcondens-2.0.0/logcondens/R/J00.R | 28 +++-
logcondens-2.0.0/logcondens/R/J10.R | 27 +++-
logcondens-2.0.0/logcondens/R/J11.R | 31 ++++-
logcondens-2.0.0/logcondens/R/J20.R | 30 ++++-
logcondens-2.0.0/logcondens/R/Lhat_eta.R | 4
logcondens-2.0.0/logcondens/R/LocalCoarsen.R | 10 -
logcondens-2.0.0/logcondens/R/LocalConvexity.R | 4
logcondens-2.0.0/logcondens/R/LocalExtend.R | 11 -
logcondens-2.0.0/logcondens/R/LocalF.R | 4
logcondens-2.0.0/logcondens/R/LocalMLE.R | 29 ++---
logcondens-2.0.0/logcondens/R/LocalNormalize.R | 4
logcondens-2.0.0/logcondens/R/LocalVariance.r |only
logcondens-2.0.0/logcondens/R/Local_LL.R | 4
logcondens-2.0.0/logcondens/R/Local_LL_all.R | 13 --
logcondens-2.0.0/logcondens/R/MLE.R | 64 ++++-------
logcondens-2.0.0/logcondens/R/Q00.R |only
logcondens-2.0.0/logcondens/R/activeSetLogCon.R | 45 ++-----
logcondens-2.0.0/logcondens/R/etaphi.R | 6 -
logcondens-2.0.0/logcondens/R/evaluateLogConDens.R | 88 +++++++++++----
logcondens-2.0.0/logcondens/R/icmaLogCon.R | 41 ++-----
logcondens-2.0.0/logcondens/R/intECDF.R | 16 +-
logcondens-2.0.0/logcondens/R/intF.R | 49 +++++---
logcondens-2.0.0/logcondens/R/isoMean.R | 17 +-
logcondens-2.0.0/logcondens/R/logConDens.r |only
logcondens-2.0.0/logcondens/R/logconTwoSample.r |only
logcondens-2.0.0/logcondens/R/maxDiffCDF.r |only
logcondens-2.0.0/logcondens/R/phieta.R | 6 -
logcondens-2.0.0/logcondens/R/plot.dlc.r |only
logcondens-2.0.0/logcondens/R/preProcess.r |only
logcondens-2.0.0/logcondens/R/qloglin.R | 29 +++--
logcondens-2.0.0/logcondens/R/quadDeriv.R | 20 +--
logcondens-2.0.0/logcondens/R/quantilesLogConDens.R | 46 ++++----
logcondens-2.0.0/logcondens/R/rlogcon.R | 69 +++++-------
logcondens-2.0.0/logcondens/R/robust.R | 17 +-
logcondens-2.0.0/logcondens/R/summary.dlc.r |only
logcondens-2.0.0/logcondens/R/vectorToString.r |only
logcondens-2.0.0/logcondens/inst/doc/logcondens.pdf |binary
logcondens-2.0.0/logcondens/man/Lhat_eta.Rd | 3
logcondens-2.0.0/logcondens/man/Local_LL.Rd | 3
logcondens-2.0.0/logcondens/man/Local_LL_all.Rd | 3
logcondens-2.0.0/logcondens/man/MLE.Rd | 5
logcondens-2.0.0/logcondens/man/Q00.Rd |only
logcondens-2.0.0/logcondens/man/activeSetLogCon.Rd | 66 ++++++-----
logcondens-2.0.0/logcondens/man/activeSetRoutines.Rd | 10 -
logcondens-2.0.0/logcondens/man/evaluateLogConDens.Rd | 47 ++++----
logcondens-2.0.0/logcondens/man/icmaLogCon.Rd | 51 +++++---
logcondens-2.0.0/logcondens/man/intECDF.Rd | 2
logcondens-2.0.0/logcondens/man/intF.Rd | 25 ++--
logcondens-2.0.0/logcondens/man/isoMean.Rd | 3
logcondens-2.0.0/logcondens/man/logConDens.Rd |only
logcondens-2.0.0/logcondens/man/logconTwoSample.Rd |only
logcondens-2.0.0/logcondens/man/logcondens-package.Rd | 97 +++++++++++------
logcondens-2.0.0/logcondens/man/maxDiffCDF.Rd |only
logcondens-2.0.0/logcondens/man/plot.dlc.Rd |only
logcondens-2.0.0/logcondens/man/preProcess.Rd |only
logcondens-2.0.0/logcondens/man/qloglin.Rd | 4
logcondens-2.0.0/logcondens/man/quantilesLogConDens.Rd | 26 ++--
logcondens-2.0.0/logcondens/man/reliability.Rd | 2
logcondens-2.0.0/logcondens/man/reparametrizations.Rd | 4
logcondens-2.0.0/logcondens/man/rlogcon.Rd | 7 -
logcondens-2.0.0/logcondens/man/robust.Rd | 3
logcondens-2.0.0/logcondens/man/summary.dlc.Rd |only
logcondens-2.0.0/logcondens/man/vectorToString.Rd |only
67 files changed, 603 insertions(+), 517 deletions(-)
Title: delftfews R extensions
Diff between delftfews versions 0.3-33 dated 2010-08-13 and 0.3-38 dated 2010-08-27
Description: a collection of timeseries sets handling functions used
here at work (Nelen en Schuurmans), initially for the Lizard
Scripter.
Author: Mario Frasca
Maintainer: Mario Frasca
DESCRIPTION | 10 +++----
R/augment.R | 4 +--
R/rezoo.R | 4 +--
R/select.R | 35 ++++++++++++++++++---------
R/timeseries-io.R | 17 ++++++-------
inst/RUnit/runit.select.R | 59 ++++++++++++++++++++++++++++++++++++++++++----
6 files changed, 95 insertions(+), 34 deletions(-)
Title: Calculate the consensus clustering result from re-sampled
clustering experiments with the option of using multiple
algorithms and parameter
Diff between clusterCons versions 0.5 dated 2010-08-25 and 0.6 dated 2010-08-27
Description: clusterCons is a package containing functions that
generate robustness measures for clusters and cluster
membership based on generating consensus matrices from
bootstrapped clustering experiments in which a random
proportion of rows of the data set are used in each individual
clustering. This allows the user to prioritise clusters and the
members of clusters based on their consistency in this regime.
The functions allow the user to select several algorithms to
use in the re-sampling scheme and with any of the parameters
that the algorithm would normally take.
Author: Dr. T. Ian Simpson, University of Edinburgh
Maintainer: Dr. T. Ian Simpson
DESCRIPTION | 8 ++++----
R/algorithms.R | 18 +++++++++++-------
R/functions.R | 2 +-
man/clusterCons-package.Rd | 4 ++--
4 files changed, 18 insertions(+), 14 deletions(-)
Title: Tools for caching and distributing statistical analyses
Diff between cacher versions 1.1 dated 2009-06-24 and 1.1-1 dated 2010-08-27
Description: This package provides tools for caching statistical
analyses in key-value databases which can subsequently be
distributed over the web.
Author: Roger D. Peng
Maintainer: Roger D. Peng
DESCRIPTION | 12 ++++++------
R/utils.R | 3 ++-
inst/doc/cacher.pdf |binary
3 files changed, 8 insertions(+), 7 deletions(-)
Title: Tools for microarray data analysis
Diff between anapuce versions 2.1 dated 2009-02-18 and 2.2 dated 2010-08-27
Description: This package contains functions for
normalisation,differentially analysis of microarray data and
others functions implementing recent methods developed by the
Statistic and Genom Team from UMR 518 AgroParisTech/INRA Appl.
Math. Comput. Sc.
Author: J. Aubert (INRA)
Maintainer: J. Aubert
DESCRIPTION | 28 +++++++++++++++++-----------
R/DiffAnalysis.R | 4 ++--
R/DiffAnalysis.unpaired.R | 6 +++---
R/FileChoice.R | 2 +-
R/Intensity.Norm.R | 2 +-
R/LBI.R | 4 ++--
R/LocalFDR.R | 2 +-
R/MeanBySpot.R | 8 ++++----
R/est.varmixt.R | 2 +-
R/fdr.estimate.eta0.R | 2 +-
R/filterByDefault.R | 2 +-
R/fonctionMobile.R | 2 +-
R/lissageMM.R | 2 +-
R/mixgamma.R | 2 +-
R/normalisation.R | 2 +-
R/rowVars.R | 2 +-
data |only
man/DiffAnalysis.Rd | 14 +++++++++++++-
man/DiffAnalysis.unpaired.Rd | 13 +++++++++++--
man/FileChoice.Rd | 3 +--
man/Intensity.Norm.Rd | 6 +++---
man/LBI.Rd | 3 ++-
man/LocalFDR.Rd | 3 ++-
man/MeanBySpot.Rd | 9 ++++-----
man/anapuce-package.Rd | 14 +++++++-------
man/apo.Rd |only
man/est.varmixt.Rd | 2 --
man/fdr.estimate.eta0.Rd | 10 +++++-----
man/filterByDefault.Rd | 4 +++-
man/fonctionMobile.Rd | 6 ------
man/mixgamma.Rd | 11 ++---------
man/normalisation.Rd | 5 ++++-
man/rowVars.Rd | 2 +-
man/spleen.Rd |only
34 files changed, 97 insertions(+), 80 deletions(-)
Title: Automates the creation of new R statistical analysis projects
Diff between ProjectTemplate versions 0.1-1 dated 2010-08-25 and 0.1-2 dated 2010-08-27
More information about ProjectTemplate at CRAN
Description: The ProjectTemplate package provides a function,
create.project(), that automatically builds a directory for a
new R project with a clean sub-directory structure and
automatic data and library loading tools. The hope is that
standardized data loading, automatic importing of best practice
packages, integrated unit testing and useful nudges towards
keeping a cleanly organized codebase will improve the quality
of R coding.
Author: John Myles White
Maintainer: John Myles White
ProjectTemplate-0.1-1/ProjectTemplate/inst/defaults/boot.R |only
ProjectTemplate-0.1-1/ProjectTemplate/inst/defaults/load_data.R |only
ProjectTemplate-0.1-1/ProjectTemplate/inst/defaults/load_libraries.R |only
ProjectTemplate-0.1-1/ProjectTemplate/inst/defaults/utilities.R |only
ProjectTemplate-0.1-2/ProjectTemplate/ChangeLog |only
ProjectTemplate-0.1-2/ProjectTemplate/DESCRIPTION | 24 ++--
ProjectTemplate-0.1-2/ProjectTemplate/R/create.project.R | 35 ++-----
ProjectTemplate-0.1-2/ProjectTemplate/R/load.project.R |only
ProjectTemplate-0.1-2/ProjectTemplate/R/run.tests.R |only
ProjectTemplate-0.1-2/ProjectTemplate/README.markdown | 49 +++++++++-
ProjectTemplate-0.1-2/ProjectTemplate/TODO | 3
ProjectTemplate-0.1-2/ProjectTemplate/build_script.sh | 4
ProjectTemplate-0.1-2/ProjectTemplate/inst/defaults/README |only
ProjectTemplate-0.1-2/ProjectTemplate/inst/defaults/TODO |only
ProjectTemplate-0.1-2/ProjectTemplate/inst/defaults/data |only
ProjectTemplate-0.1-2/ProjectTemplate/inst/defaults/diagnostics |only
ProjectTemplate-0.1-2/ProjectTemplate/inst/defaults/doc |only
ProjectTemplate-0.1-2/ProjectTemplate/inst/defaults/graphs |only
ProjectTemplate-0.1-2/ProjectTemplate/inst/defaults/lib |only
ProjectTemplate-0.1-2/ProjectTemplate/inst/defaults/profiling |only
ProjectTemplate-0.1-2/ProjectTemplate/inst/defaults/reports |only
ProjectTemplate-0.1-2/ProjectTemplate/inst/defaults/tests |only
ProjectTemplate-0.1-2/ProjectTemplate/man/ProjectTemplate-package.Rd | 20 ++--
ProjectTemplate-0.1-2/ProjectTemplate/man/create.project.Rd | 6 -
ProjectTemplate-0.1-2/ProjectTemplate/man/load.project.Rd |only
ProjectTemplate-0.1-2/ProjectTemplate/man/run.tests.Rd |only
ProjectTemplate-0.1-2/ProjectTemplate/tests/1.R | 8 +
27 files changed, 97 insertions(+), 52 deletions(-)
Permanent link
Title: Extension to ggplot2.
Diff between GGally versions 0.2.1 dated 2010-07-30 and 0.2.2 dated 2010-08-27
Description: Package contains templates for different plots to be
combined into a plot matrix.
Author: Barret Schloerke
Maintainer: Barret Schloerke
DESCRIPTION | 8 ++--
NAMESPACE | 1
R/find-combo.r | 3 -
R/gg-plots.r | 16 ++++++++-
R/ggpairs.r | 67 ++++++++++++++++++++++++++--------------
man/Not-Documented |only
man/addAndOverwriteAes.Rd | 6 ++-
man/eval_ggpair.Rd | 22 ++++++++-----
man/find_plot_type.Rd | 14 +++++---
man/getPlot.Rd | 14 +++++---
man/get_plot_type.Rd | 12 ++++---
man/ggally_barDiag.Rd | 15 +++++---
man/ggally_blank.Rd | 15 ++++++--
man/ggally_box.Rd | 14 +++++---
man/ggally_cor.Rd | 15 +++++---
man/ggally_density.Rd | 21 ++++++++----
man/ggally_densityDiag.Rd | 15 +++++---
man/ggally_denstrip.Rd | 14 +++++---
man/ggally_dot.Rd | 14 +++++---
man/ggally_dotAndBox.Rd | 17 ++++++----
man/ggally_facetdensity.Rd | 15 +++++---
man/ggally_facetdensitystrip.Rd | 17 ++++++----
man/ggally_facethist.Rd | 15 +++++---
man/ggally_points.Rd | 14 +++++---
man/ggally_ratio.Rd | 15 ++++++--
man/ggally_smooth.Rd | 15 +++++---
man/ggally_text.Rd | 24 ++++++++------
man/ggfluctuation2.Rd | 23 +++++++++----
man/ggpairs.Rd | 64 +++++++++++++++++++++-----------------
man/is_blank_plot.Rd | 6 ++-
man/make_ggpair_text.Rd |only
man/plot_types.Rd | 13 +++++--
man/print.ggpairs.Rd | 12 ++++---
man/putPlot.Rd | 18 ++++++----
man/vplayout.Rd | 12 ++++---
35 files changed, 370 insertions(+), 196 deletions(-)