Sun, 29 Aug 2010

Package modeest updated to version 1.14 with previous version 1.09 dated 2009-05-24

Title: Mode Estimation
Description: This package provides estimators of the mode of univariate unimodal data or univariate unimodal distributions
Author: P. PONCET
Maintainer: P. PONCET

Diff between modeest versions 1.09 dated 2009-05-24 and 1.14 dated 2010-08-29

 DESCRIPTION            |   15 ++---
 R/asselin.R            |    2 
 R/mlv.R                |    7 ++
 R/parzen.R             |   10 +++
 R/vieu.R               |only
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 man/asselin.Rd         |    8 --
 man/discrete.Rd        |    2 
 man/distribMode.Rd     |  146 +++++++++++++++++++++++++++++++++++++------------
 man/grenander.Rd       |    2 
 man/hsm.Rd             |    2 
 man/mlv.Rd             |    6 +-
 man/modeest-package.Rd |   14 ++--
 man/naive.Rd           |    2 
 man/parzen.Rd          |    2 
 man/skewness.Rd        |    6 +-
 man/tsybakov.Rd        |    2 
 man/venter.Rd          |    2 
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 19 files changed, 162 insertions(+), 68 deletions(-)

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Package ris updated to version 1.1 with previous version 1.0 dated 2010-02-21

Title: RIS package for bibliographic analysis
Description: Importing RIS-formatted file into a list of Bibtex-like references; checking for duplications; converting references to citEntry objects
Author: Stephanie Kovalchik
Maintainer: Stephanie Kovalchik

Diff between ris versions 1.0 dated 2010-02-21 and 1.1 dated 2010-08-29

 DESCRIPTION  |    8 ++++----
 R/read.ris.R |    2 +-
 2 files changed, 5 insertions(+), 5 deletions(-)

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Package raster updated to version 1.4-10 with previous version 1.3-11 dated 2010-08-12

Title: Geographic analysis and modeling with raster data
Description: Reading, writing, manipulating, analyzing and modeling of gridded spatial data. The package implements basic and high-level functons, as well as map algebra. Processing of very large files is supported.
Author: Robert J. Hijmans & Jacob van Etten
Maintainer: Robert J. Hijmans

Diff between raster versions 1.3-11 dated 2010-08-12 and 1.4-10 dated 2010-08-29

 raster-1.3-11/raster/R/calcStackMultFunctions.R |only
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 raster-1.4-10/raster/DESCRIPTION                |   18 -
 raster-1.4-10/raster/NAMESPACE                  |    4 
 raster-1.4-10/raster/R/AAAClasses.R             |   26 +-
 raster-1.4-10/raster/R/area.R                   |  145 ++++++++++-
 raster-1.4-10/raster/R/artith.R                 |   87 +++++-
 raster-1.4-10/raster/R/as.logical.R             |   21 +
 raster-1.4-10/raster/R/calcLayers.R             |only
 raster-1.4-10/raster/R/calcStack.R              |   13 -
 raster-1.4-10/raster/R/cellStats.R              |   89 ++++--
 raster-1.4-10/raster/R/cellValues.R             |   27 --
 raster-1.4-10/raster/R/clump.R                  |  308 +++++++-----------------
 raster-1.4-10/raster/R/coercion.R               |    9 
 raster-1.4-10/raster/R/compare_Logical.R        |   89 +++++-
 raster-1.4-10/raster/R/crop.R                   |    2 
 raster-1.4-10/raster/R/dataProperties.R         |   28 +-
 raster-1.4-10/raster/R/dropLayer.R              |   53 +++-
 raster-1.4-10/raster/R/ext.R                    |   10 
 raster-1.4-10/raster/R/extension.R              |    8 
 raster-1.4-10/raster/R/focalNA.R                |   12 
 raster-1.4-10/raster/R/getData.R                |    7 
 raster-1.4-10/raster/R/getOptions.R             |   12 
 raster-1.4-10/raster/R/getValuesBlock.R         |   20 -
 raster-1.4-10/raster/R/gridDistance.R           |  138 +++++-----
 raster-1.4-10/raster/R/interpolate.R            |    6 
 raster-1.4-10/raster/R/is.na.R                  |   37 ++
 raster-1.4-10/raster/R/mask.R                   |  110 ++++++++
 raster-1.4-10/raster/R/math.R                   |   30 +-
 raster-1.4-10/raster/R/naValue.R                |   19 +
 raster-1.4-10/raster/R/netCDFread.R             |   60 +++-
 raster-1.4-10/raster/R/netCDFreadCells.R        |    2 
 raster-1.4-10/raster/R/netCDFtoRasterCD.R       |   20 -
 raster-1.4-10/raster/R/netCDFwriteCD.R          |    1 
 raster-1.4-10/raster/R/netCDFwriteRST.R         |    1 
 raster-1.4-10/raster/R/plot.R                   |   19 -
 raster-1.4-10/raster/R/plotCT.R                 |    8 
 raster-1.4-10/raster/R/plotRGB.R                |   58 ++++
 raster-1.4-10/raster/R/polygonToRaster.R        |   12 
 raster-1.4-10/raster/R/raster.R                 |    4 
 raster-1.4-10/raster/R/rasterFromRasterFile.R   |    2 
 raster-1.4-10/raster/R/rasterTmpFile.R          |    8 
 raster-1.4-10/raster/R/rasterToPoints.R         |    6 
 raster-1.4-10/raster/R/readCells.R              |  107 ++++----
 raster-1.4-10/raster/R/readRasterBrick.R        |   24 -
 raster-1.4-10/raster/R/readRasterLayer.R        |   23 -
 raster-1.4-10/raster/R/saveOptions.R            |   21 -
 raster-1.4-10/raster/R/setOptions.R             |    7 
 raster-1.4-10/raster/R/setValues.R              |   42 ---
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 raster-1.4-10/raster/R/writeGDAL.R              |   18 +
 raster-1.4-10/raster/R/writeGDALrow.R           |   11 
 raster-1.4-10/raster/R/writeHdrRaster.R         |    5 
 raster-1.4-10/raster/R/xyValues.R               |   14 -
 raster-1.4-10/raster/inst/doc/Raster.pdf        |binary
 raster-1.4-10/raster/inst/doc/functions.pdf     |binary
 raster-1.4-10/raster/inst/doc/rasterfile.pdf    |binary
 raster-1.4-10/raster/man/Arith-methods.Rd       |   34 ++
 raster-1.4-10/raster/man/Logic-methods.Rd       |   19 -
 raster-1.4-10/raster/man/Math-methods.Rd        |   14 -
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 raster-1.4-10/raster/man/area.Rd                |   15 -
 raster-1.4-10/raster/man/as.logical-methods.Rd  |    5 
 raster-1.4-10/raster/man/calc.Rd                |   73 +----
 raster-1.4-10/raster/man/cellStats.Rd           |   10 
 raster-1.4-10/raster/man/changeStack.Rd         |    8 
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 raster-1.4-10/raster/man/extension.Rd           |    9 
 raster-1.4-10/raster/man/gridDistance.Rd        |   17 -
 raster-1.4-10/raster/man/interpolate.Rd         |    2 
 raster-1.4-10/raster/man/mask.Rd                |    8 
 raster-1.4-10/raster/man/plot.Rd                |   24 +
 raster-1.4-10/raster/man/plot3d.Rd              |   13 -
 raster-1.4-10/raster/man/pointsToRaster.Rd      |   10 
 raster-1.4-10/raster/man/projectRaster.Rd       |   25 +
 raster-1.4-10/raster/man/raster-package.Rd      |   67 ++---
 raster-1.4-10/raster/man/raster.Rd              |    4 
 raster-1.4-10/raster/man/rasterOptions.Rd       |    3 
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 88 files changed, 1353 insertions(+), 875 deletions(-)

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Package pgirmess updated to version 1.4.8 with previous version 1.4.7 dated 2010-07-24

Title: Data analysis in ecology
Description: Miscellaneous functions for analysis and display of ecological and spatial data
Author: Patrick Giraudoux
Maintainer: Patrick Giraudoux

Diff between pgirmess versions 1.4.7 dated 2010-07-24 and 1.4.8 dated 2010-08-29

 DESCRIPTION         |    8 ++++----
 R/rwhatbufCat.r     |    2 +-
 R/rwhatbufCat2.r    |only
 R/rwhatbufNum.r     |    2 +-
 man/kruskalmc.rd    |    4 ++--
 man/rwhatbufCat.rd  |    6 +++---
 man/rwhatbufCat2.rd |only
 man/selMod.Rd       |    4 +++-
 8 files changed, 14 insertions(+), 12 deletions(-)

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Package earth updated to version 2.4-2 with previous version 2.4-1 dated 2010-08-28

Title: Multivariate Adaptive Regression Spline Models
Description: Build regression models using the techniques in Friedman's papers "Fast MARS" and "Multivariate Adaptive Regression Splines". (The term "MARS" is copyrighted and thus not used in the name of the package.)
Author: Stephen Milborrow derived from mda:mars by Trevor Hastie and Rob Tibshirani.
Maintainer: Stephen Milborrow

Diff between earth versions 2.4-1 dated 2010-08-28 and 2.4-2 dated 2010-08-29

 DESCRIPTION  |    6 +++---
 NEWS         |    2 +-
 man/earth.Rd |    2 +-
 3 files changed, 5 insertions(+), 5 deletions(-)

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New package ipdmeta with initial version 1.0
Package: ipdmeta
Type: Package
Title: Mixed models for complete and partial IPD survival meta-analysis
Version: 1.0
Date: 2010-08-24
Author: S. Kovalchik
Maintainer: S. Kovalchik
Depends: survival, coxme, Matrix, phmm, metafor
Description: Mixed effects IPD meta-analysis, mixed data meta-analysis with patient level data and mulivariate survival estimates for aggregate studies
License: GPL-2
LazyLoad: yes
Packaged: 2010-08-28 07:53:45 UTC; skoval
Repository: CRAN
Date/Publication: 2010-08-29 07:13:12

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Package caret updated to version 4.58 with previous version 4.57 dated 2010-08-26

Title: Classification and Regression Training
Description: Misc functions for training and plotting classification and regression models
Author: Max Kuhn. Contributions from Jed Wing, Steve Weston, Andre Williams, Chris Keefer and Allan Engelhardt
Maintainer: Max Kuhn

Diff between caret versions 4.57 dated 2010-08-26 and 4.58 dated 2010-08-29

 DESCRIPTION                 |    8 
 NAMESPACE                   |    3 
 R/misc.R                    |   53 +-
 R/modelLookup.R             |    4 
 R/predictionFunction.R      |   28 -
 R/probFunction.R            |  160 +++++-
 R/resamples.R               |   66 +-
 R/train.default.R           |   16 
 R/trainControl.R            |    2 
 inst/NEWS                   |   10 
 inst/doc/caretMisc.pdf      |binary
 inst/doc/caretSelection.Rnw |    2 
 inst/doc/caretSelection.pdf |binary
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 inst/doc/caretTrain.pdf     |binary
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 man/postResample.Rd         |    8 
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 20 files changed, 1323 insertions(+), 311 deletions(-)

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Package bestglm updated to version 0.30 with previous version 0.20 dated 2009-11-01

Title: Best Subset GLM
Description: Best subset glm using AIC, BIC, EBIC, BICq or Cross-Validation. For the normal case, the 'leaps' is used. Otherwise, a slower exhaustive search. The 'xtable' package is needed for vignette 'SimExperimentBICq.Rnw' accompanying this package.
Author: A.I. McLeod and Changjiang Xu
Maintainer: A.I. McLeod

Diff between bestglm versions 0.20 dated 2009-11-01 and 0.30 dated 2010-08-29

 bestglm-0.20/bestglm/R/oneSd.R                      |only
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 bestglm-0.30/bestglm/inst/doc/SimExperimentBICq.pdf |binary
 bestglm-0.30/bestglm/inst/doc/bestglm.bib           |    6 
 bestglm-0.30/bestglm/inst/doc/bestglm.pdf           |  983 ++++++++++----------
 bestglm-0.30/bestglm/man/bestglm-package.Rd         |    7 
 bestglm-0.30/bestglm/man/bestglm.Rd                 |    4 
 14 files changed, 524 insertions(+), 514 deletions(-)

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