Title: Boruta -- a tool for finding significant attributes in
information systems
Diff between Boruta versions 1.2 dated 2010-05-08 and 1.3 dated 2010-09-02
Description: Boruta is a feature selection algorithm based on a
randomForest predictor. It selects the full set of all
important attributes by comparing original attributes
importance with datum importance of their randomised copies.
Author: Algorithm by Witold R. Rudnicki
Maintainer: Miron B. Kursa
DESCRIPTION | 8 ++++----
R/Boruta.R | 16 ++++++++--------
inst/CITATION |only
inst/NEWS | 6 +++++-
man/Boruta.Rd | 6 +++++-
5 files changed, 22 insertions(+), 14 deletions(-)
Title: Supervised Clustering of Predictor Variables such as Genes
Diff between supclust versions 1.0-5 dated 2005-05-18 and 1.0-6 dated 2010-09-02
Description: Methodology for supervised grouping aka "clustering" of
potentially many predictor variables, such as genes etc.
Author: Marcel Dettling
Maintainer: Martin Maechler
DESCRIPTION | 25 +++--
R/pelora-utils.R | 15 +--
R/pelora.R | 159 +++++++++++++++---------------------
man/coef.pelora.Rd | 17 ---
man/dlda.Rd | 17 ++-
man/fitted.pelora.Rd | 18 +---
man/fitted.wilma.Rd | 15 ---
man/margin.Rd | 2
man/pelora.Rd | 8 -
man/plot.pelora.Rd | 16 ---
man/plot.wilma.Rd | 25 +----
man/predict.pelora.Rd | 20 +---
man/predict.wilma.Rd | 24 ++---
man/print.pelora.Rd | 21 +---
man/print.wilma.Rd | 13 --
man/score.Rd | 2
man/sign.change.Rd | 2
man/signflip.Rd | 2
man/standardize.genes.Rd | 2
man/summary.pelora.Rd | 16 ---
man/summary.wilma.Rd | 13 --
man/wilma.Rd | 4
src/pelora.c | 6 -
src/wilma.c | 8 -
tests/pelora-ex.Rout.save | 138 +++++++++++++++----------------
tests/wilma-ex.Rout.save | 202 +++++-----------------------------------------
26 files changed, 268 insertions(+), 522 deletions(-)
Title: Functions for soil texture plot, classification and
transformation
Diff between soiltexture versions 1.0 dated 2010-08-18 and 1.01 dated 2010-09-02
Description: "The Soil Texture Wizard" is a set of R functions designed
to produce texture triangles (also called texture plots,
texture diagrams, texture ternary plots), classify and
transform soil textures data. These functions virtually allows
to plot any soil texture triangle / classification into any
triangle geometry (isosceles, right-angled triangles, etc.).
This set of function is expected to be useful to people using
soil textures data from different soil texture classification
or different particle size systems. Several texture triangles
are predefined: USDA; FAO (which is also the triangle for the
soil map of Europe); Aisne (France); GEPPA (France); German
triangle (Bodenkundliche Kartieranleitung 1994); Soil Survey of
England and Wales (UK); Australian triangle; Belgian triangle;
Canadian triangle; ISSS triangle; Romanian traingle. The Soil
Texture Wizard is initially develloped from the functions
'soil.texture()' from the package 'plotrix' by Jim Lemon et al.
Author: Julien MOEYS
Maintainer: Julien MOEYS
soiltexture-1.0/soiltexture/inst/doc2 |only
soiltexture-1.01/soiltexture/DESCRIPTION | 13 -
soiltexture-1.01/soiltexture/R/soiltexture.R | 129 +++++-----
soiltexture-1.01/soiltexture/inst/doc/CC-By-SA-nonported-88x31.PNG |only
soiltexture-1.01/soiltexture/inst/doc/Sweave.sty |only
soiltexture-1.01/soiltexture/inst/doc/TT.env.Rd |only
soiltexture-1.01/soiltexture/inst/doc/julienmoeysmailaddress-322-24.png |only
soiltexture-1.01/soiltexture/inst/doc/julienmoeysmailaddress-382-25.png |only
soiltexture-1.01/soiltexture/inst/doc/soiltexture_vignette.R |only
soiltexture-1.01/soiltexture/inst/doc/soiltexture_vignette.Rnw |only
soiltexture-1.01/soiltexture/inst/doc/soiltexture_vignette.bib |only
soiltexture-1.01/soiltexture/inst/doc/soiltexture_vignette.pdf |binary
soiltexture-1.01/soiltexture/inst/doc/transformations.R |only
soiltexture-1.01/soiltexture/inst/doc/transformations.Rnw |only
soiltexture-1.01/soiltexture/inst/doc/transformations.pdf |only
soiltexture-1.01/soiltexture/inst/doc/version.txt |only
soiltexture-1.01/soiltexture/man/TT.text.transf.Xm.Rd | 20 -
soiltexture-1.01/soiltexture/man/soiltexture-package.Rd | 4
18 files changed, 89 insertions(+), 77 deletions(-)
Title: Statistical Catch-at-Age Plotting Environment
Diff between scape versions 1.1-2 dated 2010-09-01 and 1.1-4 dated 2010-09-02
Description: Import and plot results from statistical catch-at-age
models, used in fisheries stock assessments.
Author: Arni Magnusson
Maintainer: Arni Magnusson
DESCRIPTION | 8 ++++----
NEWS | 4 ++--
data/x.cod.R | 2 +-
data/x.ling.R | 2 +-
data/x.oreo.R | 2 +-
data/x.sbw.R | 2 +-
inst/doc/Rplots.pdf | 4 ++--
inst/doc/dsc-vignette.pdf |binary
inst/doc/gallery.pdf |binary
inst/doc/mymodel.pdf |binary
man/plotB.Rd | 8 ++------
man/plotCA.Rd | 10 +++-------
man/plotCL.Rd | 8 ++------
man/plotIndex.Rd | 8 ++------
man/plotLA.Rd | 8 ++------
man/plotN.Rd | 8 ++------
man/plotSel.Rd | 6 +-----
17 files changed, 26 insertions(+), 54 deletions(-)
Title: Interface between R and GGobi
Diff between rggobi versions 2.1.14 dated 2009-05-10 and 2.1.16 dated 2010-09-02
Description: The rggobi package provides a command-line interface to
GGobi, an interactive and dynamic graphics package. Rggobi
complements GGobi's graphical user interface, providing a way
to fluidly transition between analysis and exploration, as well
as automating common tasks.
Author: Duncan Temple Lang
Maintainer: Hadley Wickham
rggobi-2.1.14/rggobi/man/as-data-frame-GGobiData-10.rd |only
rggobi-2.1.14/rggobi/man/check-versions-qe.rd |only
rggobi-2.1.14/rggobi/man/close-GGobi-jj.rd |only
rggobi-2.1.14/rggobi/man/close-GGobiDisplay-3v.rd |only
rggobi-2.1.14/rggobi/man/connecting-edges-cn.rd |only
rggobi-2.1.14/rggobi/man/dataset-GGobiDisplay-f1.rd |only
rggobi-2.1.14/rggobi/man/dataset-numeric-h2.rd |only
rggobi-2.1.14/rggobi/man/dataset-up.rd |only
rggobi-2.1.14/rggobi/man/dim-GGobiData-9t.rd |only
rggobi-2.1.14/rggobi/man/dimnames-GGobiData-ib.rd |only
rggobi-2.1.14/rggobi/man/display-GGobiData-iu.rd |only
rggobi-2.1.14/rggobi/man/displays-GGobi-4v.rd |only
rggobi-2.1.14/rggobi/man/edges---GGobi-b7.rd |only
rggobi-2.1.14/rggobi/man/edges---GGobiData-3u.rd |only
rggobi-2.1.14/rggobi/man/excluded-54.rd |only
rggobi-2.1.14/rggobi/man/excluded-GGobiData-5p.rd |only
rggobi-2.1.14/rggobi/man/ggobi-GGobiDisplay-zb.rd |only
rggobi-2.1.14/rggobi/man/ggobi-count-bo.rd |only
rggobi-2.1.14/rggobi/man/ggobi-data-add-variable-o9.rd |only
rggobi-2.1.14/rggobi/man/ggobi-data-remove-variable-36.rd |only
rggobi-2.1.14/rggobi/man/ggobi-display-get-tour-projection-ih.rd |only
rggobi-2.1.14/rggobi/man/ggobi-gtk-main-window-c4.rd |only
rggobi-2.1.14/rggobi/man/ggobi-set-data-frame-k0.rd |only
rggobi-2.1.14/rggobi/man/ggobi-symbol-34.rd |only
rggobi-2.1.14/rggobi/man/glyph-colour-GGobiData-fz.rd |only
rggobi-2.1.14/rggobi/man/glyph-size---GGobiData-c8.rd |only
rggobi-2.1.14/rggobi/man/glyph-type---GGobiData-2r.rd |only
rggobi-2.1.14/rggobi/man/glyph-type-GGobiData-2i.rd |only
rggobi-2.1.14/rggobi/man/ids-GGobiData-2v.rd |only
rggobi-2.1.14/rggobi/man/length-GGobiDisplay-a1.rd |only
rggobi-2.1.14/rggobi/man/mapGlyphType-5p.rd |only
rggobi-2.1.14/rggobi/man/names---GGobiData-ga.rd |only
rggobi-2.1.14/rggobi/man/names-GGobi-ol.rd |only
rggobi-2.1.14/rggobi/man/ncol-GGobiData-fi.rd |only
rggobi-2.1.14/rggobi/man/pmode-la.rd |only
rggobi-2.1.14/rggobi/man/print-GGobi-b6.rd |only
rggobi-2.1.14/rggobi/man/print-GGobiData-7s.rd |only
rggobi-2.1.14/rggobi/man/rownames---GGobiData-2d.rd |only
rggobi-2.1.14/rggobi/man/rownames-GGobiData-n8.rd |only
rggobi-2.1.14/rggobi/man/shadowed-GGobiData-8a.rd |only
rggobi-2.1.14/rggobi/man/summary-GGobiData-wb.rd |only
rggobi-2.1.14/rggobi/man/valid-ggobi-mk.rd |only
rggobi-2.1.14/rggobi/man/variables--hh.rd |only
rggobi-2.1.14/rggobi/man/variables-GGobiDisplay-zm.rd |only
rggobi-2.1.14/rggobi/man/variables-cf.rd |only
rggobi-2.1.16/rggobi/DESCRIPTION | 11 ++++------
rggobi-2.1.16/rggobi/R/data.r | 2 +
rggobi-2.1.16/rggobi/R/datasets.r | 6 +++--
rggobi-2.1.16/rggobi/R/display-tour.r | 5 ++--
rggobi-2.1.16/rggobi/R/display-variables.r | 3 +-
rggobi-2.1.16/rggobi/R/display.r | 1
rggobi-2.1.16/rggobi/R/edges.r | 2 +
rggobi-2.1.16/rggobi/R/ggobi.r | 5 +++-
rggobi-2.1.16/rggobi/aclocal.m4 | 4 +--
rggobi-2.1.16/rggobi/man/GGobiCall-n1.rd | 2 -
rggobi-2.1.16/rggobi/man/as-RGtkObject-8g.rd | 4 +--
rggobi-2.1.16/rggobi/man/as-data-frame-GGobiData-i6.rd |only
rggobi-2.1.16/rggobi/man/check-versions-xs.rd |only
rggobi-2.1.16/rggobi/man/clean-ggobi-bw.rd | 2 -
rggobi-2.1.16/rggobi/man/close-GGobi-kz.rd |only
rggobi-2.1.16/rggobi/man/close-GGobiDisplay-ke.rd |only
rggobi-2.1.16/rggobi/man/colorscheme-6n.rd | 2 -
rggobi-2.1.16/rggobi/man/connecting-edges-vf.rd |only
rggobi-2.1.16/rggobi/man/dataset-GGobiDisplay-gk.rd |only
rggobi-2.1.16/rggobi/man/dataset-mn.rd |only
rggobi-2.1.16/rggobi/man/dataset-numeric-gd.rd |only
rggobi-2.1.16/rggobi/man/dim-GGobiData-ok.rd |only
rggobi-2.1.16/rggobi/man/dimnames---GGobiData-ds.rd | 4 +--
rggobi-2.1.16/rggobi/man/dimnames-GGobiData-x0.rd |only
rggobi-2.1.16/rggobi/man/display-GGobiData-vz.rd |only
rggobi-2.1.16/rggobi/man/display-ce.rd | 4 +--
rggobi-2.1.16/rggobi/man/displays-GGobi-n2.rd |only
rggobi-2.1.16/rggobi/man/displays-kj.rd | 4 +--
rggobi-2.1.16/rggobi/man/edges---GGobi-m7.rd |only
rggobi-2.1.16/rggobi/man/edges---GGobiData-qe.rd |only
rggobi-2.1.16/rggobi/man/edges---GGobiDisplay-1y.rd | 2 -
rggobi-2.1.16/rggobi/man/edges--p8.rd | 4 +--
rggobi-2.1.16/rggobi/man/edges-lk.rd | 4 +--
rggobi-2.1.16/rggobi/man/excluded---GGobiData-3z.rd | 2 -
rggobi-2.1.16/rggobi/man/excluded-GGobiData-ic.rd |only
rggobi-2.1.16/rggobi/man/excluded-ec.rd |only
rggobi-2.1.16/rggobi/man/get--GGobi-7p.rd | 4 +--
rggobi-2.1.16/rggobi/man/get--GGobiData-9v.rd | 8 +++----
rggobi-2.1.16/rggobi/man/ggobi-GGobiDisplay-zh.rd |only
rggobi-2.1.16/rggobi/man/ggobi-check-structs-qq.rd | 4 ---
rggobi-2.1.16/rggobi/man/ggobi-count-u4.rd |only
rggobi-2.1.16/rggobi/man/ggobi-data-add-variable-xu.rd |only
rggobi-2.1.16/rggobi/man/ggobi-data-remove-variable-bv.rd |only
rggobi-2.1.16/rggobi/man/ggobi-data-set-variable-43.rd | 4 +--
rggobi-2.1.16/rggobi/man/ggobi-default-20.rd | 2 -
rggobi-2.1.16/rggobi/man/ggobi-display-get-tour-projection-p0.rd |only
rggobi-2.1.16/rggobi/man/ggobi-display-make-type-3r.rd | 4 +--
rggobi-2.1.16/rggobi/man/ggobi-display-set-tour-projection-2n.rd | 4 +--
rggobi-2.1.16/rggobi/man/ggobi-display-types-9g.rd | 4 +--
rggobi-2.1.16/rggobi/man/ggobi-find-file-fe.rd | 2 -
rggobi-2.1.16/rggobi/man/ggobi-get-2m.rd | 2 -
rggobi-2.1.16/rggobi/man/ggobi-gtk-main-window-l6.rd |only
rggobi-2.1.16/rggobi/man/ggobi-gtk-menu-bar-j4.rd | 2 -
rggobi-2.1.16/rggobi/man/ggobi-pcp-c7.rd | 2 -
rggobi-2.1.16/rggobi/man/ggobi-set-data-file-be.rd | 4 +--
rggobi-2.1.16/rggobi/man/ggobi-set-data-frame-vy.rd |only
rggobi-2.1.16/rggobi/man/ggobi-symbol-ec.rd |only
rggobi-2.1.16/rggobi/man/ggobi-version-ao.rd | 2 -
rggobi-2.1.16/rggobi/man/glyph-colour---GGobiData-u7.rd | 4 +--
rggobi-2.1.16/rggobi/man/glyph-colour-GGobiData-p2.rd |only
rggobi-2.1.16/rggobi/man/glyph-size---GGobiData-9w.rd |only
rggobi-2.1.16/rggobi/man/glyph-size-GGobiData-3t.rd | 2 -
rggobi-2.1.16/rggobi/man/glyph-type---GGobiData-r1.rd |only
rggobi-2.1.16/rggobi/man/glyph-type-GGobiData-og.rd |only
rggobi-2.1.16/rggobi/man/ids---GGobiData-mw.rd | 4 +--
rggobi-2.1.16/rggobi/man/ids-GGobiData-yu.rd |only
rggobi-2.1.16/rggobi/man/length-GGobiDisplay-gt.rd |only
rggobi-2.1.16/rggobi/man/mapGlyphType-t9.rd |only
rggobi-2.1.16/rggobi/man/names---GGobiData-p2.rd |only
rggobi-2.1.16/rggobi/man/names-GGobi-pt.rd |only
rggobi-2.1.16/rggobi/man/names-GGobiData-c0.rd | 4 +--
rggobi-2.1.16/rggobi/man/ncol-GGobiData-p3.rd |only
rggobi-2.1.16/rggobi/man/nrow-GGobiData-om.rd | 4 +--
rggobi-2.1.16/rggobi/man/pmode-ix.rd |only
rggobi-2.1.16/rggobi/man/pmodes-tc.rd | 2 -
rggobi-2.1.16/rggobi/man/print-GGobi-yo.rd |only
rggobi-2.1.16/rggobi/man/print-GGobiData-ja.rd |only
rggobi-2.1.16/rggobi/man/print-GGobiDisplay-o0.rd | 4 +--
rggobi-2.1.16/rggobi/man/rownames---GGobiData-rg.rd |only
rggobi-2.1.16/rggobi/man/rownames-GGobiData-pv.rd |only
rggobi-2.1.16/rggobi/man/selected-GGobiData-xv.rd | 4 +--
rggobi-2.1.16/rggobi/man/shadowed---GGobiData-h7.rd | 2 -
rggobi-2.1.16/rggobi/man/shadowed-GGobiData-8b.rd |only
rggobi-2.1.16/rggobi/man/summary-GGobi-c4.rd | 4 +--
rggobi-2.1.16/rggobi/man/summary-GGobiData-mm.rd |only
rggobi-2.1.16/rggobi/man/valid-ggobi-uv.rd |only
rggobi-2.1.16/rggobi/man/variable-index-h9.rd | 4 +--
rggobi-2.1.16/rggobi/man/variables--1i.rd |only
rggobi-2.1.16/rggobi/man/variables-2n.rd |only
rggobi-2.1.16/rggobi/man/variables-GGobiDisplay-si.rd |only
rggobi-2.1.16/rggobi/src/Makevars | 4 +--
rggobi-2.1.16/rggobi/src/RSGGobiEntryPoints.h | 4 +--
rggobi-2.1.16/rggobi/src/ggobi.c | 2 -
138 files changed, 88 insertions(+), 81 deletions(-)
Title: Low-level R to Java interface
Diff between rJava versions 0.8-4 dated 2010-04-29 and 0.8-5 dated 2010-09-02
Description: Low-level interface to Java VM very much like .C/.Call and
friends. Allows creation of objects, calling methods and
accessing fields.
Author: Simon Urbanek
Maintainer: Simon Urbanek
DESCRIPTION | 4 -
NEWS | 13 +++
inst/java/boot/RJavaClassLoader$RJavaObjectInputStream.class |binary
inst/java/boot/RJavaClassLoader.class |binary
inst/java/boot/RJavaClassLoader.java | 10 ++-
inst/javadoc/ArrayDimensionException.html | 4 -
inst/javadoc/ArrayWrapper.html | 4 -
inst/javadoc/ArrayWrapper_Test.html | 4 -
inst/javadoc/DummyPoint.html | 4 -
inst/javadoc/FlatException.html | 4 -
inst/javadoc/NotAnArrayException.html | 4 -
inst/javadoc/NotComparableException.html | 4 -
inst/javadoc/ObjectArrayException.html | 4 -
inst/javadoc/PrimitiveArrayException.html | 4 -
inst/javadoc/RJavaArrayIterator.html | 4 -
inst/javadoc/RJavaArrayTools.ArrayDimensionMismatchException.html | 4 -
inst/javadoc/RJavaArrayTools.html | 4 -
inst/javadoc/RJavaArrayTools_Test.html | 4 -
inst/javadoc/RJavaClassLoader.html | 4 -
inst/javadoc/RJavaComparator.html | 4 -
inst/javadoc/RJavaImport.html | 4 -
inst/javadoc/RJavaTools.html | 4 -
inst/javadoc/RJavaTools_Test.DummyNonStaticClass.html | 4 -
inst/javadoc/RJavaTools_Test.TestException.html | 4 -
inst/javadoc/RJavaTools_Test.html | 4 -
inst/javadoc/RectangularArrayBuilder.html | 4 -
inst/javadoc/RectangularArrayBuilder_Test.html | 4 -
inst/javadoc/RectangularArrayExamples.html | 4 -
inst/javadoc/RectangularArraySummary.html | 4 -
inst/javadoc/TestException.html | 4 -
inst/javadoc/allclasses-frame.html | 4 -
inst/javadoc/allclasses-noframe.html | 4 -
inst/javadoc/constant-values.html | 4 -
inst/javadoc/deprecated-list.html | 4 -
inst/javadoc/help-doc.html | 4 -
inst/javadoc/index-all.html | 4 -
inst/javadoc/index.html | 2
inst/javadoc/overview-tree.html | 4 -
inst/javadoc/package-frame.html | 4 -
inst/javadoc/package-summary.html | 4 -
inst/javadoc/package-tree.html | 4 -
inst/javadoc/serialized-form.html | 4 -
inst/jri/JRIEngine.jar |binary
inst/jri/REngine.jar |binary
jri/NEWS | 9 ++
jri/Rengine.java | 16 ++--
jri/src/Rengine.c | 33 ++++------
jri/src/jri.h | 8 +-
src/java/RJavaClassLoader$RJavaObjectInputStream.class |binary
src/java/RJavaClassLoader.class |binary
src/java/RJavaClassLoader.java | 10 ++-
src/rJava.h | 2
52 files changed, 144 insertions(+), 107 deletions(-)
Title: Toolkit implementation of the gWidgets API for use with web
pages
Diff between gWidgetsWWW versions 0.0-19 dated 2010-06-19 and 0.0-21 dated 2010-09-02
Description: Port of the gWidgets API to program dynamic websites. Can
be used with R's dynamic help web server to serve local files.
This provides a convenient means to make local GUIs for users
without concern for external GUI toolkits. Also, in combination
with RApache,
http://biostat.mc.vanderbilt.edu/rapache/index.html, this
framework can be used to make public websites powered by R. The
Ext JavaScript libararies (www.extjs.com) are used to create
and manipulate the widgets dynamically.
Author: John Verzani
Maintainer: John Verzani
gWidgetsWWW-0.0-19/gWidgetsWWW/R/gcodemirror.R |only
gWidgetsWWW-0.0-19/gWidgetsWWW/inst/basehtml/codemirror |only
gWidgetsWWW-0.0-21/gWidgetsWWW/ChangeLog | 9
gWidgetsWWW-0.0-21/gWidgetsWWW/DESCRIPTION | 23 -
gWidgetsWWW-0.0-21/gWidgetsWWW/NAMESPACE | 2
gWidgetsWWW-0.0-21/gWidgetsWWW/NEWS | 12
gWidgetsWWW-0.0-21/gWidgetsWWW/R/LocalVersion.R | 156 +++++++---
gWidgetsWWW-0.0-21/gWidgetsWWW/R/aaa.R | 1
gWidgetsWWW-0.0-21/gWidgetsWWW/R/common.R | 18 +
gWidgetsWWW-0.0-21/gWidgetsWWW/R/gcanvas.R | 4
gWidgetsWWW-0.0-21/gWidgetsWWW/R/gcommandline.R | 2
gWidgetsWWW-0.0-21/gWidgetsWWW/R/gdf.R | 8
gWidgetsWWW-0.0-21/gWidgetsWWW/R/ggooglemaps.R | 25 -
gWidgetsWWW-0.0-21/gWidgetsWWW/R/ggroup.R | 12
gWidgetsWWW-0.0-21/gWidgetsWWW/R/gsvg.R | 4
gWidgetsWWW-0.0-21/gWidgetsWWW/R/gtext.R | 5
gWidgetsWWW-0.0-21/gWidgetsWWW/R/gwebvis.R |only
gWidgetsWWW-0.0-21/gWidgetsWWW/R/gwindow.R | 57 ++-
gWidgetsWWW-0.0-21/gWidgetsWWW/TODO.txt | 1
gWidgetsWWW-0.0-21/gWidgetsWWW/inst/Examples/ex-clt.R | 10
gWidgetsWWW-0.0-21/gWidgetsWWW/inst/Examples/ex-widgets.R | 7
gWidgetsWWW-0.0-21/gWidgetsWWW/inst/doc/gWidgetsWWW.pdf |binary
gWidgetsWWW-0.0-21/gWidgetsWWW/man/gWidgetsWWW-undocumented.Rd | 1
gWidgetsWWW-0.0-21/gWidgetsWWW/man/gwebvis.Rd |only
gWidgetsWWW-0.0-21/gWidgetsWWW/man/localServerStart.Rd | 5
25 files changed, 245 insertions(+), 117 deletions(-)
Title: Binary R server
Diff between Rserve versions 0.6-1 dated 2010-05-25 and 0.6-2 dated 2010-09-02
Description: Rserve acts as a socket server (TCP/IP or local sockets)
which allows binary requests to be sent to R. Every connection
has a separate workspace and working directory. Client-side
implementations are available for popular languages such as
C/C++ and Java, allowing any application to use facilities of R
without the need of linking to R code. Rserve supports remote
connection, user authentication and file transfer. A simple R
client is included in this package as well.
Author: Simon Urbanek
Maintainer: Simon Urbanek
DESCRIPTION | 4
NEWS | 31 +
clients/cxx/Rconnection.cc | 62 +++
clients/cxx/Rconnection.h | 35 ++
clients/cxx/Rsrv.h | 6
clients/cxx/configure | 293 +++++++++---------
clients/java-new/Rserve/protocol/REXPFactory.java | 51 +--
clients/java-new/Rserve/test/test.java | 29 +
configure | 299 +++++++++----------
src/Makefile.win | 15
src/Rserv.c | 81 +++--
src/Rsrv.h | 6
src/client/cxx/Rconnection.cc | 62 +++
src/client/cxx/Rconnection.h | 35 ++
src/client/cxx/Rsrv.h | 6
src/client/cxx/configure | 293 +++++++++---------
src/client/java-new/Rserve/protocol/REXPFactory.java | 51 +--
src/client/java-new/Rserve/test/test.java | 29 +
src/winembed.c | 34 +-
19 files changed, 900 insertions(+), 522 deletions(-)
Title: SPArse Matrix
Diff between spam versions 0.22-0 dated 2010-06-09 and 0.23-0 dated 2010-09-02
Description: Set of function for sparse matrix algebra. Differences
with SparseM/Matrix are: (1) we only support (essentially) one
sparse matrix format, (2) based on transparent and simple
structure(s), (3) tailored for MCMC calculations within GMRF.
(4) S3 and S4 like-"compatible" ... and it is fast.
Author: Reinhard Furrer
Maintainer: Reinhard Furrer
DESCRIPTION | 8 ++++----
R/apply.R | 2 +-
R/definitions.R | 2 +-
R/dist.R | 2 +-
R/foreign.R | 2 +-
R/helper.R | 2 +-
R/kronecker.R | 2 +-
R/mle.R | 2 +-
R/permutation.R | 2 +-
R/plotting.R | 2 +-
R/profile.R | 2 +-
R/spam_solve.R | 2 +-
R/xybind.R | 2 +-
demo/article-jss-example1.R | 22 +++++++++++-----------
demo/article-jss-example2.R | 24 ++++++++++++------------
demo/article-jss.R | 14 +++++++-------
demo/cholesky.R | 2 +-
demo/spam.R | 2 +-
demo/timing.R | 2 +-
inst/CITATION |only
inst/NEWS | 9 +++++++++
man/Oral.Rd | 2 +-
man/SPAM.Rd | 11 +++++++----
man/UScounties.Rd | 4 ++--
man/USprecip.Rd | 2 +-
man/allequal.Rd | 2 +-
man/apply.Rd | 2 +-
man/bandwidth.Rd | 11 +++++------
man/bdiag.Rd | 2 +-
man/chol.Rd | 2 +-
man/complexity.Rd | 2 +-
man/det.Rd | 2 +-
man/diag.Rd | 2 +-
man/dim.Rd | 2 +-
man/display.Rd | 26 +++++++++++++-------------
man/foreign.Rd | 2 +-
man/germany.Rd | 4 ++--
man/history.spam.Rd | 5 +++--
man/image.Rd | 2 +-
man/import.Rd | 5 ++---
man/isSymmetric.Rd | 2 +-
man/kronecker.Rd | 10 +++++-----
man/lu.tri.Rd | 2 +-
man/math.Rd | 2 +-
man/math2.Rd | 2 +-
man/mle.Rd | 2 +-
man/nearestdist.Rd | 2 +-
man/operations.Rd | 2 +-
man/options.Rd | 2 +-
man/ordering.Rd | 2 +-
man/permutation.Rd | 2 +-
man/powerboost.Rd | 2 +-
man/print.Rd | 2 +-
man/rmvnorm.Rd | 2 +-
man/solve.Rd | 2 +-
man/spam-class.Rd | 2 +-
man/spam.chol.NgPeyton-class.Rd | 2 +-
man/spam.creation.Rd | 2 +-
man/spam.internal.Rd | 2 +-
man/summary.Rd | 2 +-
man/todo.Rd | 2 +-
man/triplet.Rd | 2 +-
man/version.Rd | 2 +-
man/xybind.Rd | 2 +-
tests/demo_article-jss-example1.R | 2 +-
tests/demo_article-jss-example1.Rout.save | 6 +++---
tests/demo_article-jss-example2.R | 2 +-
tests/demo_article-jss-example2.Rout.save | 11 ++++++-----
tests/demo_article-jss.R | 2 +-
tests/demo_article-jss.Rout.save | 6 +++---
tests/demo_cholesky.R | 2 +-
tests/demo_cholesky.Rout.save | 6 +++---
tests/demo_spam.R | 2 +-
tests/demo_spam.Rout.save | 6 +++---
tests/demo_timing.R | 2 +-
tests/demo_timing.Rout.save | 6 +++---
tests/displays.R | 2 +-
tests/displays.Rout.save | 6 +++---
tests/dist.R | 2 +-
tests/dist.Rout.save | 6 +++---
tests/foreign.R | 2 +-
tests/foreign.Rout.save | 4 ++--
tests/helper.R | 2 +-
tests/helper.Rout.save | 6 +++---
tests/kronecker.R | 2 +-
tests/kronecker.Rout.save | 6 +++---
tests/mle.R | 2 +-
tests/mle.Rout.save | 6 +++---
tests/overall.R | 2 +-
tests/overall.Rout.save | 6 +++---
tests/permutation.R | 2 +-
tests/permutation.Rout.save | 6 +++---
tests/solve.R | 2 +-
tests/solve.Rout.save | 6 +++---
tests/xybind.R | 2 +-
tests/xybind.Rout.save | 6 +++---
96 files changed, 198 insertions(+), 186 deletions(-)
Title: Read data from files readable by gnumeric
Diff between gnumeric versions 0.5-3 dated 2009-09-18 and 0.6-1 dated 2010-09-02
Description: Read data files readable by gnumeric into R. Can read
whole sheet or a range, from several file formats, including
the native format of gnumeric. Reading is done by using
ssconvert (a file converter utility included in the gnumeric
distribution http://projects.gnome.org/gnumeric/) to convert
the requested part to CSV. From gnumeric files (but not other
formats) can list sheet names and sheet sizes or read all
sheets.
Author: Karoly Antal
Maintainer: Karoly Antal
DESCRIPTION | 8 ++++----
R/read.gnumeric.R | 28 +++++++++++++++++++++++-----
changelog | 13 ++++++++++++-
man/read.gnumeric.sheet.Rd | 22 +++++++++++++---------
man/read.gnumeric.sheets.Rd | 13 ++++++++++---
5 files changed, 62 insertions(+), 22 deletions(-)
Title: Multidimensional Numerical Integration
Diff between R2Cuba versions 1.0-5 dated 2010-09-01 and 1.0-6 dated 2010-09-02
Description: R2Cuba implements four general-purpose multidimensional
integration algorithms: Vegas, Suave, Divonne and Cuhre
Author: The Cuba library has been written by Thomas Hahn
(http://wwwth.mppmu.mpg.de/members/hahn); Interface to R was
written by Annie Bouvier and Kiên Kiêu
Maintainer: Annie Bouvier
DESCRIPTION | 9 +++++----
man/R2Cuba-package.Rd | 7 ++++---
2 files changed, 9 insertions(+), 7 deletions(-)
Title: FISH Based Normalization and Copy Number inference of SNP
microarray data
Diff between FBN versions 1.4 dated 2010-02-03 and 1.5 dated 2010-09-02
Description: Normalizes the data from a file containing the raw values
of the SNP probes of microarrray data by using the FISH probes
and their corresponding CNs.
Author: Adrian Andronache
Maintainer: Adrian Andronache
DESCRIPTION | 8 ++++----
R/FBNormalization.R | 38 ++++++++++++++++++++++++++++++--------
man/FBN-package.Rd | 4 ++--
man/FBNormalization.Rd | 6 ++++--
4 files changed, 40 insertions(+), 16 deletions(-)
Title: Text Analysis Utilities
Diff between tau versions 0.0-9 dated 2010-08-10 and 0.0-10 dated 2010-09-02
Description: Utilities for text analysis
Author: Christian Buchta, Kurt Hornik, Ingo Feinerer, David Meyer
Maintainer: Kurt Hornik
DESCRIPTION | 9 +++++----
R/sysdata.rda |binary
2 files changed, 5 insertions(+), 4 deletions(-)
Title: Cluster ensembles
Diff between clue versions 0.3-34 dated 2010-04-27 and 0.3-35 dated 2010-09-02
Description: CLUster Ensembles
Author: Kurt Hornik, with contributions from Walter Boehm
Maintainer: Kurt Hornik
DESCRIPTION | 11 ++++++-----
R/dissimilarity.R | 14 ++++++++++++++
R/membership.R | 15 +++++++++++++--
R/objects.R | 2 +-
R/partition.R | 9 ++++++++-
R/pclust.R | 14 +++++++++-----
R/registration.R | 3 +++
inst/doc/clue.pdf |binary
man/cl_dissimilarity.Rd | 8 ++++++++
man/pclust.Rd | 4 ++--
10 files changed, 64 insertions(+), 16 deletions(-)
Title: Latent position and cluster models for statistical networks
Diff between latentnet versions 2.3-0 dated 2010-04-07 and 2.4-0 dated 2010-09-02
Description: A package to fit and simulate latent position and cluster
models for statistical networks.
Author: Pavel N. Krivitsky
Maintainer: Pavel N. Krivitsky
ChangeLog | 17 ++++++
DESCRIPTION | 12 ++--
R/bayesmbc.R | 12 ++--
R/ergmm.MCMC.C.R | 36 ++++++-------
R/ergmm.R | 9 +--
R/ergmm.get.model.R | 6 +-
R/ergmm.initvals.R | 121 ++++++++++++++++++++++++++++++---------------
R/ergmm.par.R | 10 +--
R/ergmm.statseval.R | 14 -----
R/ergmm.tuner.R | 35 ++++++++-----
R/gof.ergmm.R | 2
R/label.switching.R | 2
R/mcmc.diagnostics.ergmm.R | 6 +-
R/plot.ergmm.R | 2
R/summary.ergmm.R | 8 +-
R/utilities.R | 3 -
man/as.mcmc.list.ergmm.Rd | 13 ++--
man/ergmm.object.Rd | 5 -
man/latentnet-internal.Rd | 5 +
man/summary.ergmm.Rd | 42 ++++++++++++++-
20 files changed, 231 insertions(+), 129 deletions(-)
Title: Smoothed minimax concave penalization (SMCP) method for
genome-wide association studies.
Diff between SMCP versions 1.1.2 dated 2010-08-30 and 1.1.3 dated 2010-09-02
Description: A package containing functions for genome-wide association
studies.
Author: Jin (Gordon) Liu
Maintainer: Jin (Gordon) Liu
DESCRIPTION | 12 ++++++------
R/SMCP.R | 2 +-
man/SMCP.Rd | 15 +++++++--------
3 files changed, 14 insertions(+), 15 deletions(-)