Tue, 27 Dec 2011

Package topicmodels updated to version 0.1-4 with previous version 0.1-3 dated 2011-10-23

Title: Topic models
Description: Provides an interface to the C code for Latent Dirichlet Allocation (LDA) models and Correlated Topics Models (CTM) by David M. Blei and co-authors and the C++ code for fitting LDA models using Gibbs sampling by Xuan-Hieu Phan and co-authors.
Author: Bettina Grün and Kurt Hornik
Maintainer: Bettina Grün

Diff between topicmodels versions 0.1-3 dated 2011-10-23 and 0.1-4 dated 2011-12-27

 DESCRIPTION              |   17 +++++++++--------
 MD5                      |    8 ++++----
 NEWS                     |    5 +++++
 inst/NEWS                |    5 +++++
 inst/doc/topicmodels.pdf |binary
 5 files changed, 23 insertions(+), 12 deletions(-)

More information about topicmodels at CRAN
Permanent link

Package textir updated to version 1.7-3 with previous version 1.7-2 dated 2011-12-01

Title: Inverse Regression for Text Analysis
Description: A suite of tools for text and sentiment mining. This includes the `mnlm' function, for sparse multinomial logistic regression, `pls', a concise partial least squares routine, and the `topics' function, for efficient estimation and dimension selection in latent topic models.
Author: Matt Taddy
Maintainer: Matt Taddy

Diff between textir versions 1.7-2 dated 2011-12-01 and 1.7-3 dated 2011-12-27

 ChangeLog     |    5 +++++
 DESCRIPTION   |    8 ++++----
 MD5           |   10 +++++-----
 R/topics.R    |    2 ++
 R/tpx.R       |   24 ++++++++++++++++++------
 src/mnlogit.c |   13 +++++++------
 6 files changed, 41 insertions(+), 21 deletions(-)

More information about textir at CRAN
Permanent link

Package Rsymphony updated to version 0.1-14 with previous version 0.1-12 dated 2010-10-12

Title: Symphony in R
Description: An R interface to the SYMPHONY MILP solver (version 5.4.3).
Author: Reinhard Harter [aut], Kurt Hornik [aut, cre], Stefan Theussl [aut]
Maintainer: Kurt Hornik

Diff between Rsymphony versions 0.1-12 dated 2010-10-12 and 0.1-14 dated 2011-12-27

 Rsymphony-0.1-12/Rsymphony/src/SYMPHONY/Cgl/MSVisualStudio/v6                                                      |only
 Rsymphony-0.1-12/Rsymphony/src/SYMPHONY/Cgl/MSVisualStudio/v7                                                      |only
 Rsymphony-0.1-12/Rsymphony/src/SYMPHONY/Cgl/MSVisualStudio/v8                                                      |only
 Rsymphony-0.1-12/Rsymphony/src/SYMPHONY/Cgl/cgl_addlibs.txt.in                                                     |only
 Rsymphony-0.1-12/Rsymphony/src/SYMPHONY/Cgl/inc                                                                    |only
 Rsymphony-0.1-12/Rsymphony/src/SYMPHONY/Clp/MSVisualStudio/v6                                                      |only
 Rsymphony-0.1-12/Rsymphony/src/SYMPHONY/Clp/MSVisualStudio/v7                                                      |only
 Rsymphony-0.1-12/Rsymphony/src/SYMPHONY/Clp/MSVisualStudio/v8                                                      |only
 Rsymphony-0.1-12/Rsymphony/src/SYMPHONY/Clp/clp_addlibs.txt.in                                                     |only
 Rsymphony-0.1-12/Rsymphony/src/SYMPHONY/Clp/inc                                                                    |only
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 Rsymphony-0.1-12/Rsymphony/src/SYMPHONY/CoinUtils/inc                                                              |only
 Rsymphony-0.1-12/Rsymphony/src/SYMPHONY/Externals                                                                  |only
 Rsymphony-0.1-12/Rsymphony/src/SYMPHONY/FlopC++                                                                    |only
 Rsymphony-0.1-12/Rsymphony/src/SYMPHONY/Osi/MSVisualStudio/v6                                                      |only
 Rsymphony-0.1-12/Rsymphony/src/SYMPHONY/Osi/MSVisualStudio/v7                                                      |only
 Rsymphony-0.1-12/Rsymphony/src/SYMPHONY/Osi/MSVisualStudio/v8                                                      |only
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 Rsymphony-0.1-12/Rsymphony/src/SYMPHONY/Osi/examples/specific.cpp                                                  |only
 Rsymphony-0.1-12/Rsymphony/src/SYMPHONY/Osi/inc                                                                    |only
 Rsymphony-0.1-12/Rsymphony/src/SYMPHONY/Osi/m4                                                                     |only
 Rsymphony-0.1-12/Rsymphony/src/SYMPHONY/Osi/osi_addlibs.txt.in                                                     |only
 Rsymphony-0.1-12/Rsymphony/src/SYMPHONY/Osi/src/Makefile.am                                                        |only
 Rsymphony-0.1-12/Rsymphony/src/SYMPHONY/Osi/src/Makefile.in                                                        |only
 Rsymphony-0.1-12/Rsymphony/src/SYMPHONY/Osi/src/OsiAuxInfo.cpp                                                     |only
 Rsymphony-0.1-12/Rsymphony/src/SYMPHONY/Osi/src/OsiAuxInfo.hpp                                                     |only
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 Rsymphony-0.1-12/Rsymphony/src/SYMPHONY/Osi/src/OsiCbc                                                             |only
 Rsymphony-0.1-12/Rsymphony/src/SYMPHONY/Osi/src/OsiChooseVariable.cpp                                              |only
 Rsymphony-0.1-12/Rsymphony/src/SYMPHONY/Osi/src/OsiChooseVariable.hpp                                              |only
 Rsymphony-0.1-12/Rsymphony/src/SYMPHONY/Osi/src/OsiClp                                                             |only
 Rsymphony-0.1-12/Rsymphony/src/SYMPHONY/Osi/src/OsiColCut.cpp                                                      |only
 Rsymphony-0.1-12/Rsymphony/src/SYMPHONY/Osi/src/OsiColCut.hpp                                                      |only
 Rsymphony-0.1-12/Rsymphony/src/SYMPHONY/Osi/src/OsiCollections.hpp                                                 |only
 Rsymphony-0.1-12/Rsymphony/src/SYMPHONY/Osi/src/OsiConfig.h                                                        |only
 Rsymphony-0.1-12/Rsymphony/src/SYMPHONY/Osi/src/OsiCut.cpp                                                         |only
 Rsymphony-0.1-12/Rsymphony/src/SYMPHONY/Osi/src/OsiCut.hpp                                                         |only
 Rsymphony-0.1-12/Rsymphony/src/SYMPHONY/Osi/src/OsiCuts.cpp                                                        |only
 Rsymphony-0.1-12/Rsymphony/src/SYMPHONY/Osi/src/OsiCuts.hpp                                                        |only
 Rsymphony-0.1-12/Rsymphony/src/SYMPHONY/Osi/src/OsiDylp                                                            |only
 Rsymphony-0.1-12/Rsymphony/src/SYMPHONY/Osi/src/OsiFmp                                                             |only
 Rsymphony-0.1-12/Rsymphony/src/SYMPHONY/Osi/src/OsiNames.cpp                                                       |only
 Rsymphony-0.1-12/Rsymphony/src/SYMPHONY/Osi/src/OsiOpbdpSolve.cpp                                                  |only
 Rsymphony-0.1-12/Rsymphony/src/SYMPHONY/Osi/src/OsiOpbdpSolve.hpp                                                  |only
 Rsymphony-0.1-12/Rsymphony/src/SYMPHONY/Osi/src/OsiOsl                                                             |only
 Rsymphony-0.1-12/Rsymphony/src/SYMPHONY/Osi/src/OsiPresolve.cpp                                                    |only
 Rsymphony-0.1-12/Rsymphony/src/SYMPHONY/Osi/src/OsiPresolve.hpp                                                    |only
 Rsymphony-0.1-12/Rsymphony/src/SYMPHONY/Osi/src/OsiRowCut.cpp                                                      |only
 Rsymphony-0.1-12/Rsymphony/src/SYMPHONY/Osi/src/OsiRowCut.hpp                                                      |only
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 Rsymphony-0.1-12/Rsymphony/src/SYMPHONY/Osi/src/OsiSym                                                             |only
 Rsymphony-0.1-12/Rsymphony/src/SYMPHONY/Osi/src/OsiVol                                                             |only
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 Rsymphony-0.1-14/Rsymphony/DESCRIPTION                                                                             |   23 
 Rsymphony-0.1-14/Rsymphony/MD5                                                                                     |only
 Rsymphony-0.1-14/Rsymphony/configure                                                                               |    1 
 Rsymphony-0.1-14/Rsymphony/src/SYMPHONY/BuildTools/MSVisualStudio                                                  |only
 Rsymphony-0.1-14/Rsymphony/src/SYMPHONY/BuildTools/Makemain.inc                                                    |   22 
 Rsymphony-0.1-14/Rsymphony/src/SYMPHONY/BuildTools/coin-functions                                                  |only
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 Rsymphony-0.1-14/Rsymphony/src/SYMPHONY/BuildTools/share/config.site                                               |   14 
 Rsymphony-0.1-14/Rsymphony/src/SYMPHONY/Cgl/LICENSE                                                                |  365 
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 Rsymphony-0.1-14/Rsymphony/src/SYMPHONY/Cgl/README                                                                 |    2 
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 Rsymphony-0.1-14/Rsymphony/src/SYMPHONY/Cgl/examples/cgl1.cpp                                                      |   12 
 Rsymphony-0.1-14/Rsymphony/src/SYMPHONY/Cgl/examples/cgl_data_test.cpp                                             |    6 
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 Rsymphony-0.1-14/Rsymphony/src/SYMPHONY/Cgl/src/CglClique/CglClique.cpp                                            |   36 
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 Rsymphony-0.1-14/Rsymphony/src/SYMPHONY/Cgl/src/CglClique/CglCliqueHelper.cpp                                      |   24 
 Rsymphony-0.1-14/Rsymphony/src/SYMPHONY/Cgl/src/CglClique/CglCliqueTest.cpp                                        |    2 
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 Rsymphony-0.1-14/Rsymphony/src/SYMPHONY/Cgl/src/CglConfig.h                                                        |   67 
 Rsymphony-0.1-14/Rsymphony/src/SYMPHONY/Cgl/src/CglCutGenerator.cpp                                                |    3 
 Rsymphony-0.1-14/Rsymphony/src/SYMPHONY/Cgl/src/CglCutGenerator.hpp                                                |    2 
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 Rsymphony-0.1-14/Rsymphony/src/SYMPHONY/Cgl/src/CglMessage.cpp                                                     |    2 
 Rsymphony-0.1-14/Rsymphony/src/SYMPHONY/Cgl/src/CglMessage.hpp                                                     |    3 
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 Rsymphony-0.1-14/Rsymphony/src/SYMPHONY/Cgl/src/CglOddHole/CglOddHole.cpp                                          |   13 
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 Rsymphony-0.1-14/Rsymphony/src/SYMPHONY/Cgl/src/CglParam.cpp                                                       |    4 
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 Rsymphony-0.1-14/Rsymphony/src/SYMPHONY/Clp/LICENSE                                                                |  365 
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 Rsymphony-0.1-14/Rsymphony/src/SYMPHONY/Clp/examples/hello.cpp                                                     |   93 
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 Rsymphony-0.1-14/Rsymphony/src/SYMPHONY/Clp/examples/pdco.cpp                                                      |  106 
 Rsymphony-0.1-14/Rsymphony/src/SYMPHONY/Clp/examples/piece.cpp                                                     |  520 
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 Rsymphony-0.1-14/Rsymphony/src/SYMPHONY/Clp/src/ClpGubMatrix.hpp                                                   |  664 
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 Rsymphony-0.1-14/Rsymphony/src/SYMPHONY/Clp/src/ClpInterior.cpp                                                    | 2214 
 Rsymphony-0.1-14/Rsymphony/src/SYMPHONY/Clp/src/ClpInterior.hpp                                                    |  986 
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 Rsymphony-0.1-14/Rsymphony/src/SYMPHONY/Clp/src/ClpMain.cpp                                                        | 6224 -
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 Rsymphony-0.1-14/Rsymphony/src/SYMPHONY/Clp/src/ClpModel.cpp                                                       | 7507 +-
 Rsymphony-0.1-14/Rsymphony/src/SYMPHONY/Clp/src/ClpModel.hpp                                                       | 2212 
 Rsymphony-0.1-14/Rsymphony/src/SYMPHONY/Clp/src/ClpNetworkBasis.cpp                                                | 2143 
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 Rsymphony-0.1-14/Rsymphony/src/SYMPHONY/Clp/src/ClpNode.cpp                                                        | 2142 
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 Rsymphony-0.1-14/Rsymphony/src/SYMPHONY/Clp/src/ClpObjective.cpp                                                   |   55 
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 Rsymphony-0.1-14/Rsymphony/src/SYMPHONY/Clp/src/ClpPdco.cpp                                                        | 1608 
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 Rsymphony-0.1-14/Rsymphony/src/SYMPHONY/Clp/src/ClpSimplex.cpp                                                     |21415 ++---
 Rsymphony-0.1-14/Rsymphony/src/SYMPHONY/Clp/src/ClpSimplex.hpp                                                     | 2826 
 Rsymphony-0.1-14/Rsymphony/src/SYMPHONY/Clp/src/ClpSimplexDual.cpp                                                 |13309 +--
 Rsymphony-0.1-14/Rsymphony/src/SYMPHONY/Clp/src/ClpSimplexDual.hpp                                                 |  558 
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 Rsymphony-0.1-14/Rsymphony/src/SYMPHONY/Clp/src/ClpSolve.cpp                                                       | 8821 +-
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 Rsymphony-0.1-14/Rsymphony/src/SYMPHONY/README                                                                     |    2 
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More information about Rsymphony at CRAN
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Package Rknots updated to version 1.2 with previous version 1.1 dated 2011-09-06

Title: Rknots
Description: The Rknots package contains functions for the topological analysis of polymers, with a major focus on proteins.
Author: Federico Comoglio and Maurizio Rinaldi
Maintainer: Federico Comoglio

Diff between Rknots versions 1.1 dated 2011-09-06 and 1.2 dated 2011-12-27

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More information about Rknots at CRAN
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Package oro.nifti updated to version 0.2.9 with previous version 0.2.8 dated 2011-10-19

Title: Rigorous - NIfTI+ANALYZE+AFNI Input / Output
Description: Functions for the input/output and visualization of medical imaging data that follow either the ANALYZE, NIfTI or AFNI formats. This package is part of the Rigorous Analytics bundle.
Author: Brandon Whitcher, Volker Schmid and Andrew Thornton, with contributions by Karsten Tabelow
Maintainer: Brandon Whitcher

Diff between oro.nifti versions 0.2.8 dated 2011-10-19 and 0.2.9 dated 2011-12-27

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More information about oro.nifti at CRAN
Permanent link

Package oro.dicom updated to version 0.3.3 with previous version 0.3.1 dated 2011-10-19

Title: Rigorous - DICOM Input / Output
Description: Data input/output functions for data that conform to the Digital Imaging and Communications in Medicine (DICOM) standard, part of the Rigorous Analytics bundle.
Author: Brandon Whitcher
Maintainer: Brandon Whitcher

Diff between oro.dicom versions 0.3.1 dated 2011-10-19 and 0.3.3 dated 2011-12-27

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Package mritc updated to version 0.3-5 with previous version 0.3-4 dated 2011-10-24

Title: MRI tissue classification.
Description: Various methods for MRI tissue classification.
Author: Dai Feng and Luke Tierney
Maintainer: Dai Feng

Diff between mritc versions 0.3-4 dated 2011-10-24 and 0.3-5 dated 2011-12-27

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More information about mritc at CRAN
Permanent link

Package modelfree updated to version 1.0-2 with previous version 1.0 dated 2010-10-20

Title: Model-free estimation of a psychometric function
Description: Local linear estimation of psychometric functions. Provides functions for nonparametric estimation of a psychometric function and for estimation of a derived threshold and slope, and their standard deviations and confidence intervals
Author: Ivan Marin-Franch , Kamila Zychaluk , and David H. Foster
Maintainer: Kamila Zychaluk , David H. Foster , Ivan Marin-Franch

Diff between modelfree versions 1.0 dated 2010-10-20 and 1.0-2 dated 2011-12-27

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Package bios2mds updated to version 1.2 with previous version 1.1 dated 2011-07-23

Title: From BIOlogical Sequences to MultiDimensional Scaling
Description: Bios2mds is primarily dedicated to the analysis of biological sequences by metric MultiDimensional Scaling with projection of supplementary data. It contains functions for reading multiple sequence alignment files, calculating distance matrices, performing metric multidimensional scaling and visualizing results.
Author: Julien Pele with Jean-Michel Becu, Herve Abdi, and Marie Chabbert
Maintainer: Marie Chabbert

Diff between bios2mds versions 1.1 dated 2011-07-23 and 1.2 dated 2011-12-27

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Package USPS updated to version 1.2-1 with previous version 1.2-0 dated 2009-02-15

Title: Unsupervised and Supervised methods of Propensity Score Adjustment for Bias
Description: Unsupervised methods: Define Local Treatment Differences (LTDs) and Local Average Outcomes (LAOs) within Clusters of well-matched patients and display their distributions across Clusters. This form of Nonparametric Preprocessing of observational data is also called Local Control because it uses post-hoc blocking to implement nested ANOVA (treatment within cluster.) Supervised methods: Estimate and Validate Propensity Scores and use them to either sub-group or smooth observed patient outcomes over the common support of alternative treatment cohorts.
Author: Bob Obenchain
Maintainer: Bob Obenchain

Diff between USPS versions 1.2-0 dated 2009-02-15 and 1.2-1 dated 2011-12-27

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Package untb updated to version 1.6-9 with previous version 1.6-8 dated 2011-08-11

Title: ecological drift under the UNTB
Description: A collection of utilities for biodiversity data. Includes the simulation of ecological drift under Hubbell's Unified Neutral Theory of Biodiversity, and the calculation of various diagnostics such as Preston curves. Now includes functionality provided by Francois Munoz and Andrea Manica.
Author: Robin K. S. Hankin
Maintainer: Robin K. S. Hankin

Diff between untb versions 1.6-8 dated 2011-08-11 and 1.6-9 dated 2011-12-27

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Package tmvtnorm updated to version 1.4-1 with previous version 1.3-1 dated 2011-12-02

Title: Truncated Multivariate Normal and Student t Distribution
Description: Random number generation for the truncated multivariate normal and Student t distribution. Computes probabilities, quantiles and densities, including one-dimensional and bivariate marginal densities. Computes first and second moments (i.e. mean and covariance matrix) for the double-truncated multinormal case.
Author: Stefan Wilhelm with contributions from Manjunath B G
Maintainer: Stefan Wilhelm

Diff between tmvtnorm versions 1.3-1 dated 2011-12-02 and 1.4-1 dated 2011-12-27

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Package Synth updated to version 1.1-2 with previous version 1.1-1 dated 2011-09-28

Title: Synthetic Control Group Method for Comparative Case Studies
Description: Implements the synthetic control group method for comparative case studies developed in Abadie and Gardeazabal (2003) and Abadie, Diamond, and Hainmueller (2010). The synthetic control method allows for effect estimation in settings where a single unit (a state, country, firm, etc.) is exposed to an event or intervention. It provides a data-driven procedure to construct synthetic control units based on a weighted combination of comparison units that approximates the characteristics of the unit that is exposed to the intervention. A combination of comparison units often provides a better comparison for the unit exposed to the intervention than any comparison unit alone.
Author: Jens Hainmueller and Alexis Diamond
Maintainer: Jens Hainmueller

Diff between Synth versions 1.1-1 dated 2011-09-28 and 1.1-2 dated 2011-12-27

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Package spider updated to version 1.1-1 with previous version 1.1-0 dated 2011-11-12

Title: Species Identity and Evolution in R
Description: A package for the analysis of species limits and DNA barcoding data
Author: Samuel Brown, Rupert Collins, Stephane Boyer, Marie-Caroline Lefort, Jagoba Malumbres-Olarte, Cor Vink, Rob Cruickshank
Maintainer: Samuel Brown

Diff between spider versions 1.1-0 dated 2011-11-12 and 1.1-1 dated 2011-12-27

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Package RXshrink updated to version 1.0-7 with previous version 1.0-6 dated 2010-10-01

Title: Maximum Likelihood Shrinkage via Generalized Ridge or Least Angle Regression
Description: Identify and display TRACEs for a specified shrinkage path and determine the extent of shrinkage most likely, under normal distribution theory, to produce an optimal reduction in MSE Risk in estimates of regression (beta) coefficients.
Author: Bob Obenchain
Maintainer: Bob Obenchain

Diff between RXshrink versions 1.0-6 dated 2010-10-01 and 1.0-7 dated 2011-12-27

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Package RQDA updated to version 0.2-2 with previous version 0.2-1 dated 2011-09-11

Title: R-based Qualitative Data Analysis
Description: R package for Qualitative Data Analysis. Current version only supports plain text.
Author: HUANG Ronggui
Maintainer: HUANG Ronggui

Diff between RQDA versions 0.2-1 dated 2011-09-11 and 0.2-2 dated 2011-12-27

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Package RHmm updated to version 1.5.5 with previous version 1.5.0 dated 2011-05-21

Title: Hidden Markov Models simulations and estimations
Description: Discrete, univariate or multivariate gaussian, mixture of univariate or multivariate gaussian HMM functions for simulation and estimation.
Author: Ollivier TARAMASCO, Sebastian Bauer
Maintainer: Ollivier TARAMASCO , Sebastian Bauer

Diff between RHmm versions 1.5.0 dated 2011-05-21 and 1.5.5 dated 2011-12-27

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Package Rcpp updated to version 0.9.9 with previous version 0.9.8 dated 2011-12-22

Title: Seamless R and C++ Integration
Description: The Rcpp package provides a C++ library which facilitates the integration of R and C++. R data types (SEXP) are matched to C++ objects in a class hierarchy. All R types are supported (vectors, functions, environment, etc ...) and each type is mapped to a dedicated class. For example, numeric vectors are represented as instances of the Rcpp::NumericVector class, environments are represented as instances of Rcpp::Environment, functions are represented as Rcpp::Function, etc ... The "Rcpp-introduction" vignette provides a good entry point to Rcpp. Conversion from C++ to R and back is driven by the templates Rcpp::wrap and Rcpp::as which are highly flexible and extensible, as documented in the "Rcpp-extending" vignette. Rcpp also provides Rcpp modules, a framework that allows exposing C++ functions and classes to the R level. The "Rcpp-modules" vignette details the current set of features of Rcpp-modules. Rcpp includes a concept called Rcpp sugar that brings many R functions into C++. Sugar takes advantage of lazy evaluation and expression templates to achieve great performance while exposing a syntax that is much nicer to use than the equivalent low-level loop code. The "Rcpp-sugar" vignette gives an overview of the feature. Several examples are included, and more than 750 unit tests in over 330 unit test functions provide additional usage examples. An earlier version of Rcpp, containing what we now call the 'classic Rcpp API' was written during 2005 and 2006 by Dominick Samperi. This code has been factored out of Rcpp into the package RcppClassic, and it is still available for code relying on the older interface. New development, however, should use the Rcpp package instead.
Author: Dirk Eddelbuettel and Romain Francois, with contributions by Douglas Bates and John Chambers
Maintainer: Dirk Eddelbuettel and Romain Francois

Diff between Rcpp versions 0.9.8 dated 2011-12-22 and 0.9.9 dated 2011-12-27

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Package Rcmdr updated to version 1.8-1 with previous version 1.7-3 dated 2011-11-20

Title: R Commander
Description: A platform-independent basic-statistics GUI (graphical user interface) for R, based on the tcltk package.
Author: John Fox [aut, cre], Liviu Andronic [ctb], Michael Ash [ctb], Milan Bouchet-Valat [ctb], Theophilius Boye [ctb], Stefano Calza [ctb], Andy Chang [ctb], Philippe Grosjean [ctb], Richard Heiberger [ctb], Kosar Karimi Pour [ctb], G. Jay Kerns [ctb], Renaud Lancelot [ctb], Matthieu Lesnoff [ctb], Uwe Ligges [ctb], Samir Messad [ctb], Martin Maechler [ctb], Robert Muenchen [ctb], Duncan Murdoch [ctb], Erich Neuwirth [ctb], Dan Putler [ctb], Brian Ripley [ctb], Miroslav Ristic [ctb], Peter Wolf [ctb]
Maintainer: John Fox

Diff between Rcmdr versions 1.7-3 dated 2011-11-20 and 1.8-1 dated 2011-12-27

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Package pedigree updated to version 1.3.2 with previous version 1.3.1 dated 2010-06-21

Title: Pedigree functions
Description: Pedigree related functions
Author: Albart Coster
Maintainer:

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Package pcaPP updated to version 1.9-45 with previous version 1.9-44 dated 2011-09-13

Title: Robust PCA by Projection Pursuit
Description: Robust PCA by Projection Pursuit
Author: Peter Filzmoser, Heinrich Fritz, Klaudius Kalcher
Maintainer: Heinrich Fritz

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Package partitions updated to version 1.9-12 with previous version 1.9-10 dated 2011-08-11

Title: Additive partitions of integers
Description: Additive partitions of integers. Enumerates the partitions, unequal partitions, and restricted partitions of an integer; the three corresponding partition functions are also given. Set partitions are now included.
Author: Robin K. S. Hankin
Maintainer: Robin K. S. Hankin

Diff between partitions versions 1.9-10 dated 2011-08-11 and 1.9-12 dated 2011-12-27

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Package onion updated to version 1.2-4 with previous version 1.2-3 dated 2009-10-15

Title: octonions and quaternions
Description: A collection of routines to manipulate and visualize quaternions and octonions.
Author: Robin K. S. Hankin
Maintainer: Robin K. S. Hankin

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New package Ohmage with initial version 2.9
Package: Ohmage
Type: Package
Title: R Client for Mobilize/Andwellness server
Version: 2.9
Date: 2011-09-28
Author: Jeroen Ooms
Maintainer: Jeroen Ooms
Description: R Client for Mobilize and Andwellness server. Implements basic R functions to call and process data.
License: GPL
Depends: RCurl, opencpu.encode, XML
Collate: 'increment.curlcount.R' 'loadtest.R' 'multifactor.R' 'oh.auth_token.R' 'oh.call.R' 'oh.campaign.create.R' 'oh.campaign.delete.R' 'oh.campaign.read.R' 'oh.class.create.R' 'oh.class.delete.R' 'oh.class.read.R' 'oh.class.update.R' 'oh.image.read.R' 'oh.login.R' 'oh.survey_response.read.R' 'oh.survey.upload.R' 'oh.user.auth.R' 'oh.user.create.R' 'oh.user.delete.R' 'oh.user.read.R' 'oh.user_stat.read.R' 'parse.date.R' 'parse.item.R' 'parse.prompt.R' 'parsevector.R' 'print.param.list.R' 'renewCurl.R' 'oh.logout.R' 'onAttach.R'
Packaged: 2011-12-27 06:26:32 UTC; jeroen
Repository: CRAN
Date/Publication: 2011-12-27 10:05:52

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New package Mobilize with initial version 2.9
Package: Mobilize
Type: Package
Title: Mobilize plots and functions
Version: 2.9
Date: 2011-09-28
Author: Jeroen Ooms
Maintainer: Jeroen Ooms
Description: Some canned plots and functions designed for the mobilize project. Designed to be called remotely.
License: GPL
Depends: Ohmage, ggplot2, reshape
Collate: 'bin.by.date.R' 'biplot.R' 'campaigndata.R' 'distributionplot.R' 'getpicture.R' 'geturl.R' 'gmapdata.R' 'keepalive.R' 'responseplot.R' 'scatterplot.R' 'sharedplot.R' 'sharedtimeplot.R' 'test.mobilze.R' 'timeplot.R' 'userplot.R'
Packaged: 2011-12-27 06:26:30 UTC; jeroen
Repository: CRAN
Date/Publication: 2011-12-27 10:05:51

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Package magic updated to version 1.5-1 with previous version 1.4-6 dated 2009-10-16

Title: create and investigate magic squares
Description: a collection of efficient, vectorized algorithms for the creation and investigation of magic squares and hypercubes, including a variety of functions for the manipulation and analysis of arbitrarily dimensioned arrays. The package includes methods for creating normal magic squares of any order greater than 2. The ultimate intention is for the package to be a computerized embodiment all magic square knowledge, including direct numerical verification of properties of magic squares (such as recent results on the determinant of odd-ordered semimagic squares). Some antimagic functionality is included. The package also serves as a rebuttal to the often-heard comment "I thought R was just for statistics".
Author: Robin K. S. Hankin
Maintainer: Robin K. S. Hankin

Diff between magic versions 1.4-6 dated 2009-10-16 and 1.5-1 dated 2011-12-27

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Package KRLS updated to version 0.2 with previous version 0.1 dated 2011-09-30

Title: Kernel-based Regularized Least Squares (KRLS)
Description: Package implements Kernel-based Regularized Least Squares (KRLS), a machine learning method that can be used to fit multidimensional functions for regression and classification problems without relying on linearity or additivity assumptions. This package is currently in alpha phase (feedback is appreciated).
Author: Jens Hainmueller (MIT) Chad Hazlett (MIT)
Maintainer: Jens Hainmueller

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Package ICEinfer updated to version 1.0-0 with previous version 0.2-0 dated 2009-02-15

Title: Incremental Cost-Effectiveness (ICE) Statistical Inference from Two Unbiased Samples
Description: Given two unbiased samples of patient level data on cost and effectiveness for a pair of treatments, make head-to-head treatment comparisons by (i) generating the bivariate bootstrap resampling distribution of ICE uncertainty for a specified value of the shadow price of health, lambda, (ii) form the wedge-shaped ICE confidence region with specified confidence fraction within [0.50, 0.99] that is equivariant with respect to changes in lambda, (iii) color the bootstrap outcomes within the above confidence wedge with economic preferences from an ICE map with specified values of lambda, beta and gamma parameters, (iv) display VAGR and ALICE acceptability curves, and (v) illustrate variation in ICE preferences by displaying potentially non-linear indifference(iso-preference) curves from an ICE map with specified values of lambda, beta and gamma or eta parameters.
Author: Bob Obenchain
Maintainer: Bob Obenchain

Diff between ICEinfer versions 0.2-0 dated 2009-02-15 and 1.0-0 dated 2011-12-27

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Package hyperdirichlet updated to version 1.4-6 with previous version 1.4-5 dated 2011-03-27

Title: A generalization of the Dirichlet distribution
Description: A suite of routines for the hyperdirichlet distribution
Author: Robin K.S. Hankin
Maintainer:

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Package GrapheR updated to version 1.9-71 with previous version 1.9-70 dated 2011-12-23

Title: A multiplatform GUI for drawing customizable graphs in R
Description: GrapheR is a multiplatform user interface for drawing highly customizable graphs in R. It aims to be a valuable help to quickly draw publishable graphs without any knowledge of R commands. Six kinds of graph are available: histogram, box-and-whisker plot, bar plot, pie chart, curve and scatter plot.
Author: Maxime Herv
Maintainer: Maxime Herv

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Package emulator updated to version 1.2-9 with previous version 1.2-8 dated 2011-08-11

Title: Bayesian emulation of computer programs
Description: This package allows one to estimate the output of a computer program, as a function of the input parameters, without actually running it. The computer program is assumed to be a Gaussian process, whose parameters are estimated using Bayesian techniqes that give a PDF of expected program output. This PDF is conditional on a ``training set'' of runs, each consisting of a point in parameter space and the model output at that point. The emphasis is on complex codes that take weeks or months to run, and that have a large number of undetermined input parameters; many climate prediction models fall into this class. The emulator essentially determines Bayesian a-postiori estimates of the PDF of the output of a model, conditioned on results from previous runs and a user-specified prior linear model. A working example is given in the help page for function `interpolant()', which should be the first point of reference.
Author: Robin K. S. Hankin
Maintainer: Robin K. S. Hankin

Diff between emulator versions 1.2-8 dated 2011-08-11 and 1.2-9 dated 2011-12-27

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Package elliptic updated to version 1.2-9 with previous version 1.2-8 dated 2011-08-12

Title: elliptic functions
Description: A suite of elliptic and related functions including Weierstrass and Jacobi forms. Also includes various tools for manipulating and visualizing complex functions.
Author: Robin K. S. Hankin
Maintainer: Robin K. S. Hankin

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Package ebal updated to version 0.1-2 with previous version 0.1-1 dated 2011-07-27

Title: Entropy reweighting to create balanced samples
Description: Package implements entropy balancing, a data preprocessing procedure that allows users to reweight a dataset such that the covariate distributions in the reweighted data satisfy a set of user specified moment conditions. This can be useful to create balanced samples in observational studies with a binary treatment where the control group data can be reweighted to match the covariate moments in the treatment group. Entropy balancing can also be used to reweight a survey sample to known characteristics from a target population. This package is currently in alpha phase (feedback is appreciated).
Author: Jens Hainmueller
Maintainer: Jens Hainmueller

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 R/zzz.r     |    8 ++++----
 5 files changed, 9 insertions(+), 18 deletions(-)

More information about ebal at CRAN
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Package aqp updated to version 0.99-9 with previous version 0.99-8.56 dated 2011-12-19

Title: Algorithms for Quantitative Pedology
Description: A collection of algorithms related to modeling of soil resources, soil classification, soil profile aggregation, and visualization.
Author: Dylan Beaudette , Pierre Roudier
Maintainer: Dylan Beaudette , Pierre Roudier

Diff between aqp versions 0.99-8.56 dated 2011-12-19 and 0.99-9 dated 2011-12-27

 aqp-0.99-8.56/aqp/man/SPC-slice_slab_aggregate.Rd      |only
 aqp-0.99-8.56/aqp/man/soil.slot.multiple-methods.Rd    |only
 aqp-0.99-9/aqp/DESCRIPTION                             |   10 
 aqp-0.99-9/aqp/MD5                                     |   59 -
 aqp-0.99-9/aqp/NEWS                                    |   13 
 aqp-0.99-9/aqp/R/NASIS_functions.R                     |only
 aqp-0.99-9/aqp/R/SoilProfileCollection-coercion.R      |   16 
 aqp-0.99-9/aqp/R/SoilProfileCollection-methods.R       |    2 
 aqp-0.99-9/aqp/R/SoilProfileCollection-slice-methods.R |  156 +--
 aqp-0.99-9/aqp/R/munsell2rgb.R                         |    2 
 aqp-0.99-9/aqp/R/pedonPC_functions.R                   |    3 
 aqp-0.99-9/aqp/R/setters.R                             |    9 
 aqp-0.99-9/aqp/R/soil_slotting.R                       |   24 
 aqp-0.99-9/aqp/TODO                                    |   14 
 aqp-0.99-9/aqp/data/sp1.rda                            |binary
 aqp-0.99-9/aqp/data/sp2.rda                            |binary
 aqp-0.99-9/aqp/data/sp3.rda                            |binary
 aqp-0.99-9/aqp/demo/aqp.R                              |    2 
 aqp-0.99-9/aqp/inst/doc/aqp-intro.Rnw                  |    2 
 aqp-0.99-9/aqp/inst/doc/aqp-intro.pdf                  |binary
 aqp-0.99-9/aqp/inst/doc/aqp-vignette.pdf               |binary
 aqp-0.99-9/aqp/man/SPC-slab-methods.Rd                 |only
 aqp-0.99-9/aqp/man/SPC-slice-methods.Rd                |only
 aqp-0.99-9/aqp/man/SoilProfileCollection-class.Rd      |    2 
 aqp-0.99-9/aqp/man/ca630.Rd                            |   20 
 aqp-0.99-9/aqp/man/munsell.Rd                          |    8 
 aqp-0.99-9/aqp/man/munsell2rgb.Rd                      |   10 
 aqp-0.99-9/aqp/man/panel.depth_function.Rd             |    2 
 aqp-0.99-9/aqp/man/random_profile.Rd                   |    2 
 aqp-0.99-9/aqp/man/soil.slot.Rd                        |  674 ++++++++---------
 aqp-0.99-9/aqp/man/sp1.Rd                              |   16 
 aqp-0.99-9/aqp/man/sp3.Rd                              |    2 
 aqp-0.99-9/aqp/man/test_hz_logic.Rd                    |   23 
 33 files changed, 534 insertions(+), 537 deletions(-)

More information about aqp at CRAN
Permanent link


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